Histone H2A

Overview


Name	Histone H2A
Smed ID	SMED30002436
Length (bp)	565

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Histone H2A (SMED30002436) t-SNE clustered cells

Violin plots show distribution of expression levels for Histone H2A (SMED30002436) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Histone H2A (SMED30002436) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Histone H2A (SMED30002436) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30002436

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 11

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
prepharyngeal region	SMED30002436	h1SMcG0005750	SmedASXL_002319	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
X1 cell	SMED30002436	h1SMcG0005750	SmedASXL_002319	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30002436	h1SMcG0005750	SmedASXL_002319	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
Smed sexual biotype	SMED30002436	h1SMcG0005750	Contig37830	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30002436	h1SMcG0005750	Contig37830	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30002436	h1SMcG0005750	dd_Smed_v4_2787_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30002436	h1SMcG0005750	dd_Smed_v4_2787_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parapharyngeal region	SMED30002436	h1SMcG0005750	dd_Smed_v6_2787_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
zeta neoblast	SMED30002436	h1SMcG0005750	dd_Smed_v4_2787_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
neoblast	SMED30002436	h1SMcG0005750	SMED_04153_V2_1	GPL14150_gene_models	PMID:22385657 Wagner et al., 2012
neoblast	SMED30002436	h1SMcG0005750	SMED_04153_V2_1	GPL14150	PMID:22385657 Wagner et al., 2012

Note: Hover over icons to view figure legend

Homology

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BLAST of Histone H2A vs. Ensembl Human
Match: H2AJ (H2A.J histone [Source:HGNC Symbol;Acc:HGNC:14456])

HSP 1 Score: 174.096 bits (440), Expect = 6.710e-56
Identity = 83/111 (74.77%), Postives = 96/111 (86.49%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            GKV+    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK
Sbjct:    9 GKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119

[Close]

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            GKV+    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK
Sbjct:    9 GKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119

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BLAST of Histone H2A vs. Ensembl Human
Match: H2AC20 (H2A clustered histone 20 [Source:HGNC Symbol;Acc:HGNC:4738])

HSP 1 Score: 173.711 bits (439), Expect = 1.122e-55
Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            GK +    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVYM+A+LEYLTAEILELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK
Sbjct:    9 GKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119

[Close]

BLAST of Histone H2A vs. Ensembl Human
Match: H2AC19 (H2A clustered histone 19 [Source:HGNC Symbol;Acc:HGNC:29668])

HSP 1 Score: 173.326 bits (438), Expect = 1.473e-55
Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            GK +    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVYM+A+LEYLTAEILELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK
Sbjct:    9 GKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119

[Close]

BLAST of Histone H2A vs. Ensembl Human
Match: H2AC18 (H2A clustered histone 18 [Source:HGNC Symbol;Acc:HGNC:4736])

HSP 1 Score: 173.326 bits (438), Expect = 1.473e-55
Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            GK +    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVYM+A+LEYLTAEILELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK
Sbjct:    9 GKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119

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BLAST of Histone H2A vs. Ensembl Celegans
Match: his-35 (Histone H2A [Source:UniProtKB/TrEMBL;Acc:Q27485])

HSP 1 Score: 165.622 bits (418), Expect = 5.155e-53
Identity = 78/113 (69.03%), Postives = 96/113 (84.96%), Query Frame = 1

Query:   91 SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKE 429
            SRSSRAGL FPVGR+HR+LRKG + +R+G GAPVY++A+LEYL AE+LELAGNAARDNKK+RIAPRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   K   +KE
Sbjct:   18 SRSSRAGLQFPVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPK---KTAGDKE 127

[Close]

Query:   91 SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKE 429
            SRSSRAGL FPVGR+HR+LRKG + +R+G GAPVY++A+LEYL AE+LELAGNAARDNKK+RIAPRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   K   +KE
Sbjct:   18 SRSSRAGLQFPVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPK---KTAGDKE 127

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BLAST of Histone H2A vs. Ensembl Celegans
Match: his-68 (Histone H2A [Source:UniProtKB/Swiss-Prot;Acc:P09588])

HSP 1 Score: 165.236 bits (417), Expect = 7.638e-53
Identity = 75/103 (72.82%), Postives = 92/103 (89.32%), Query Frame = 1

Query:   91 SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            SRSSRAGL FPVGR+HR+LRKG + +R+G GAPVY++A+LEYL AE+LELAGNAARDNKK+RIAPRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK
Sbjct:   18 SRSSRAGLQFPVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPK 120

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BLAST of Histone H2A vs. Ensembl Celegans
Match: his-65 (Histone H2A [Source:UniProtKB/Swiss-Prot;Acc:P09588])

HSP 1 Score: 165.236 bits (417), Expect = 7.638e-53
Identity = 75/103 (72.82%), Postives = 92/103 (89.32%), Query Frame = 1

Query:   91 SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            SRSSRAGL FPVGR+HR+LRKG + +R+G GAPVY++A+LEYL AE+LELAGNAARDNKK+RIAPRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK
Sbjct:   18 SRSSRAGLQFPVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPK 120

[Close]

BLAST of Histone H2A vs. Ensembl Celegans
Match: his-61 (Histone H2A [Source:UniProtKB/Swiss-Prot;Acc:P09588])

HSP 1 Score: 165.236 bits (417), Expect = 7.638e-53
Identity = 75/103 (72.82%), Postives = 92/103 (89.32%), Query Frame = 1

Query:   91 SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            SRSSRAGL FPVGR+HR+LRKG + +R+G GAPVY++A+LEYL AE+LELAGNAARDNKK+RIAPRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK
Sbjct:   18 SRSSRAGLQFPVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPK 120

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BLAST of Histone H2A vs. Ensembl Fly
Match: His2A:CG33853 (gene:FBgn0053853 transcript:FBtr0091857)

HSP 1 Score: 166.007 bits (419), Expect = 5.635e-53
Identity = 76/107 (71.03%), Postives = 91/107 (85.05%), Query Frame = 1

Query:   91 SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNK 411
            SRS RAGL FPVGR+HRLLRKG + ER+G GAPVY++A++EYL AE+LELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK   K
Sbjct:   16 SRSDRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122

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BLAST of Histone H2A vs. Ensembl Fly
Match: His2A:CG33859 (gene:FBgn0053859 transcript:FBtr0091863)

HSP 1 Score: 166.007 bits (419), Expect = 5.635e-53
Identity = 76/107 (71.03%), Postives = 91/107 (85.05%), Query Frame = 1

Query:   91 SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNK 411
            SRS RAGL FPVGR+HRLLRKG + ER+G GAPVY++A++EYL AE+LELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK   K
Sbjct:   16 SRSDRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122

[Close]

BLAST of Histone H2A vs. Ensembl Fly
Match: His2A:CG33856 (gene:FBgn0053856 transcript:FBtr0091860)

HSP 1 Score: 166.007 bits (419), Expect = 5.635e-53
Identity = 76/107 (71.03%), Postives = 91/107 (85.05%), Query Frame = 1

Query:   91 SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNK 411
            SRS RAGL FPVGR+HRLLRKG + ER+G GAPVY++A++EYL AE+LELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK   K
Sbjct:   16 SRSDRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122

[Close]

BLAST of Histone H2A vs. Ensembl Fly
Match: His2A:CG33850 (gene:FBgn0053850 transcript:FBtr0091854)

HSP 1 Score: 166.007 bits (419), Expect = 5.697e-53
Identity = 76/107 (71.03%), Postives = 92/107 (85.98%), Query Frame = 1

Query:   91 SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNK 411
            SRS+RAGL FPVGR+HRLLRKG + ER+G GAPVY++A++EYL AE+LELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK   K
Sbjct:   16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122

[Close]

BLAST of Histone H2A vs. Ensembl Fly
Match: His2A:CG33847 (gene:FBgn0053847 transcript:FBtr0091851)

HSP 1 Score: 166.007 bits (419), Expect = 5.697e-53
Identity = 76/107 (71.03%), Postives = 92/107 (85.98%), Query Frame = 1

Query:   91 SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNK 411
            SRS+RAGL FPVGR+HRLLRKG + ER+G GAPVY++A++EYL AE+LELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK   K
Sbjct:   16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122

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BLAST of Histone H2A vs. Ensembl Zebrafish
Match: h2ax1 (H2A.X variant histone family member 1 [Source:ZFIN;Acc:ZDB-GENE-041010-42])

HSP 1 Score: 176.407 bits (446), Expect = 6.309e-57
Identity = 84/120 (70.00%), Postives = 99/120 (82.50%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANK 426
            GK +    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   KP  +K
Sbjct:    9 GKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKPAKSK 128

[Close]

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANK 426
            GK +    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   KP  +K
Sbjct:    9 GKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKPAKSK 128

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BLAST of Histone H2A vs. Ensembl Zebrafish
Match: si:ch211-113a14.19 (si:ch211-113a14.19 [Source:ZFIN;Acc:ZDB-GENE-121214-198])

HSP 1 Score: 172.555 bits (436), Expect = 2.300e-55
Identity = 82/120 (68.33%), Postives = 97/120 (80.83%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANK 426
            GK +    +RSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   K    K
Sbjct:    9 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKAAKGK 128

[Close]

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANK 426
            GK +    +RSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   K    K
Sbjct:    9 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKAAKGK 128

[Close]

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANK 426
            GK +    +RSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   K    K
Sbjct:    9 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKAAKGK 128

[Close]

BLAST of Histone H2A vs. Ensembl Xenopus
Match: h2ac1 (H2A clustered histone 1 [Source:NCBI gene;Acc:594915])

HSP 1 Score: 177.178 bits (448), Expect = 5.947e-57
Identity = 87/139 (62.59%), Postives = 109/139 (78.42%), Query Frame = 1

Query:   67 GKVKKLQ------NSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENRAPKVIESQEF 465
            G+ KK+Q      +SRS++AGL FPVGR+HRLLRKG + ERIG G+ +Y++A LEYL AE+LELAGNAARDNKKSRI PRHI LA++ND EL++L   VTI+ GGV+PNIQ+ LLPK  +K  A++E   PKV ESQEF
Sbjct:    3 GRGKKVQKAASGKSSRSAKAGLQFPVGRIHRLLRKGNYAERIGSGSAIYLAATLEYLCAEVLELAGNAARDNKKSRILPRHIQLAVRNDDELAKLFDGVTIADGGVLPNIQSALLPKKTSKGSASQE---PKVAESQEF 138

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BLAST of Histone H2A vs. Ensembl Xenopus
Match: ENSXETT00000000447.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:124390910:124391717:1 gene:ENSXETG00000000090.1 transcript:ENSXETT00000000447.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 176.792 bits (447), Expect = 7.788e-57
Identity = 85/131 (64.89%), Postives = 102/131 (77.86%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENRAPKVIESQ 459
            GK +    +RSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ+ LLPK      A K N +     SQ
Sbjct:    9 GKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTESTKAAKSNGSSATCCSQ 139

[Close]

BLAST of Histone H2A vs. Ensembl Xenopus
Match: lyl1 (lymphoblastic leukemia associated hematopoiesis regulator 1 [Source:Xenbase;Acc:XB-GENE-940268])

HSP 1 Score: 174.866 bits (442), Expect = 5.119e-56
Identity = 85/139 (61.15%), Postives = 107/139 (76.98%), Query Frame = 1

Query:   67 GKVKKLQ------NSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENRAPKVIESQEF 465
            G+ KK+Q      +SRS++AGL FPVGR+HRLLRKG + ERIG G+ +Y++A LEYL AE+LELAGNAARDNKKSRI PRHI LA++ND EL++L   VTI+ GGV+PNIQ+ LLPK   K V    ++ PK +ESQEF
Sbjct:    3 GRGKKVQKAASGKSSRSAKAGLQFPVGRIHRLLRKGNYAERIGSGSAIYLAATLEYLCAEVLELAGNAARDNKKSRILPRHIQLAVRNDDELAKLFDGVTIADGGVLPNIQSALLPK---KTVKGSSSQEPKAVESQEF 138

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BLAST of Histone H2A vs. Ensembl Xenopus
Match: lyl1 (lymphoblastic leukemia associated hematopoiesis regulator 1 [Source:Xenbase;Acc:XB-GENE-940268])

HSP 1 Score: 175.252 bits (443), Expect = 6.123e-56
Identity = 85/139 (61.15%), Postives = 107/139 (76.98%), Query Frame = 1

Query:   67 GKVKKLQ------NSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENRAPKVIESQEF 465
            G+ KK+Q      +SRS++AGL FPVGR+HRLLRKG + ERIG G+ +Y++A LEYL AE+LELAGNAARDNKKSRI PRHI LA++ND EL++L   VTI+ GGV+PNIQ+ LLPK   K V    ++ PK +ESQEF
Sbjct:   21 GRGKKVQKAASGKSSRSAKAGLQFPVGRIHRLLRKGNYAERIGSGSAIYLAATLEYLCAEVLELAGNAARDNKKSRILPRHIQLAVRNDDELAKLFDGVTIADGGVLPNIQSALLPK---KTVKGSSSQEPKAVESQEF 156

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BLAST of Histone H2A vs. Ensembl Xenopus
Match: trps1 (transcriptional repressor GATA binding 1 [Source:Xenbase;Acc:XB-GENE-1013667])

HSP 1 Score: 173.711 bits (439), Expect = 1.121e-55
Identity = 83/120 (69.17%), Postives = 99/120 (82.50%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANK 426
            GKV+    +RSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ+ LLPK      A K
Sbjct:    9 GKVRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTESSKAAK 128

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BLAST of Histone H2A vs. Ensembl Mouse
Match: H2ac21 (H2A clustered histone 21 [Source:MGI Symbol;Acc:MGI:2448314])

HSP 1 Score: 174.096 bits (440), Expect = 5.918e-56
Identity = 86/122 (70.49%), Postives = 100/122 (81.97%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK--TPNKPVANK 426
            GK +    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVYM+A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK    +KP  NK
Sbjct:    9 GKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTESHKPGKNK 130

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BLAST of Histone H2A vs. Ensembl Mouse
Match: H2aj (H2J.A histone [Source:MGI Symbol;Acc:MGI:3606192])

HSP 1 Score: 173.711 bits (439), Expect = 6.395e-56
Identity = 86/121 (71.07%), Postives = 102/121 (84.30%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLP-KTPNKPVANK 426
            GKV+    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLP KT ++ V +K
Sbjct:    9 GKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESQKVKSK 129

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BLAST of Histone H2A vs. Ensembl Mouse
Match: H2aj (H2J.A histone [Source:MGI Symbol;Acc:MGI:3606192])

HSP 1 Score: 173.711 bits (439), Expect = 7.640e-56
Identity = 83/111 (74.77%), Postives = 96/111 (86.49%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            GKV+    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK
Sbjct:    9 GKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK 119

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BLAST of Histone H2A vs. Ensembl Mouse
Match: H2ac20 (H2A clustered histone 20 [Source:MGI Symbol;Acc:MGI:2448316])

HSP 1 Score: 173.711 bits (439), Expect = 7.700e-56
Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            GK +    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVYM+A+LEYLTAEILELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK
Sbjct:    9 GKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119

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BLAST of Histone H2A vs. Ensembl Mouse
Match: H2ac18 (H2A clustered histone 18 [Source:MGI Symbol;Acc:MGI:96097])

HSP 1 Score: 173.326 bits (438), Expect = 1.011e-55
Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            GK +    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVYM+A+LEYLTAEILELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK
Sbjct:    9 GKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119

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BLAST of Histone H2A vs. UniProt/SwissProt
Match: sp|P70082|H2AJ_CHICK (Histone H2A.J OS=Gallus gallus OX=9031 GN=H2A-IX PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.080e-55
Identity = 84/111 (75.68%), Postives = 96/111 (86.49%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            GKV+    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVYM+A+LEYLTAEILELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK
Sbjct:    9 GKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119

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BLAST of Histone H2A vs. UniProt/SwissProt
Match: sp|Q9BTM1|H2AJ_HUMAN (Histone H2A.J OS=Homo sapiens OX=9606 GN=H2AJ PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.223e-55
Identity = 83/111 (74.77%), Postives = 96/111 (86.49%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            GKV+    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK
Sbjct:    9 GKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119

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BLAST of Histone H2A vs. UniProt/SwissProt
Match: sp|Q3ZBX9|H2AJ_BOVIN (Histone H2A.J OS=Bos taurus OX=9913 GN=H2AJ PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.223e-55
Identity = 83/111 (74.77%), Postives = 96/111 (86.49%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            GKV+    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK
Sbjct:    9 GKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119

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BLAST of Histone H2A vs. UniProt/SwissProt
Match: sp|Q4R3X5|H2AJ_MACFA (Histone H2A.J OS=Macaca fascicularis OX=9541 GN=H2AJ PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.294e-55
Identity = 83/111 (74.77%), Postives = 96/111 (86.49%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            GKV+    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK
Sbjct:    9 GKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 119

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BLAST of Histone H2A vs. UniProt/SwissProt
Match: sp|Q64522|H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus OX=10090 GN=H2ac21 PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 4.139e-55
Identity = 86/122 (70.49%), Postives = 100/122 (81.97%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK--TPNKPVANK 426
            GK +    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVYM+A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK    +KP  NK
Sbjct:    9 GKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTESHKPGKNK 130

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BLAST of Histone H2A vs. TrEMBL
Match: A0A3B4XIT1 (Histone H2A OS=Seriola lalandi dorsalis OX=1841481 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.357e-55
Identity = 87/131 (66.41%), Postives = 103/131 (78.63%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENRAPKVIESQ 459
            GK +    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   KP  + E R  K +  Q
Sbjct:    9 GKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKPAGDDEGRGKKHVLDQ 139

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BLAST of Histone H2A vs. TrEMBL
Match: A0A3B4VF88 (Histone H2A OS=Seriola dumerili OX=41447 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.357e-55
Identity = 87/131 (66.41%), Postives = 103/131 (78.63%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENRAPKVIESQ 459
            GK +    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   KP  + E R  K +  Q
Sbjct:    9 GKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKPAGDDEGRGKKHVLDQ 139

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BLAST of Histone H2A vs. TrEMBL
Match: I3JF64 (Histone H2A OS=Oreochromis niloticus OX=8128 GN=LOC100704896 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.654e-55
Identity = 88/125 (70.40%), Postives = 106/125 (84.80%), Query Frame = 1

Query:   91 SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENRAPKVIESQEF 465
            SRSSRAG+TFPVGR+HRLLRKG + +RIG GA VYMS++LEYL AEILELAGNA+RDNKKSRIAPRHILLA+KND EL++LL  VTIS GGV+PNIQ +LLPK   K   +K++ + K ++SQEF
Sbjct:   17 SRSSRAGITFPVGRIHRLLRKGNYAKRIGVGASVYMSSVLEYLCAEILELAGNASRDNKKSRIAPRHILLAVKNDDELNKLLAGVTISDGGVIPNIQASLLPK---KTKTSKDDNSAKDVQSQEF 138

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BLAST of Histone H2A vs. TrEMBL
Match: A0A3Q1IF10 (Histone H2A OS=Anabas testudineus OX=64144 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.127e-55
Identity = 87/125 (69.60%), Postives = 105/125 (84.00%), Query Frame = 1

Query:   91 SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENRAPKVIESQEF 465
            SRSSRAG+TFPVGR+HRLLRKG + ER+G GA VY+SA+LEYL AEILELAGNA+RDNKK RIAPRHILLA+KND EL++LL  VTIS+GGV+PNIQ +LLPK    P   K++ + K ++SQEF
Sbjct:   17 SRSSRAGITFPVGRIHRLLRKGNYAERVGTGAAVYLSAVLEYLCAEILELAGNASRDNKKHRIAPRHILLAVKNDEELNKLLAGVTISEGGVIPNIQASLLPKKTKAP---KDDSSAKDVQSQEF 138

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BLAST of Histone H2A vs. TrEMBL
Match: A0A3B3Z2X9 (Histone H2A OS=Poecilia mexicana OX=48701 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.622e-55
Identity = 85/128 (66.41%), Postives = 104/128 (81.25%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENRAPKVI 450
            GK +    +RSSRAGL FPVGRVHRLLRKG +GER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   KP   K+ +  K++
Sbjct:    9 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYGERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKPAKAKQEQTQKIL 136

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BLAST of Histone H2A vs. Ensembl Cavefish
Match: ENSAMXT00000040985.1 (pep primary_assembly:Astyanax_mexicanus-2.0:20:27523804:27524807:1 gene:ENSAMXG00000035879.1 transcript:ENSAMXT00000040985.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 174.866 bits (442), Expect = 1.856e-56
Identity = 84/123 (68.29%), Postives = 99/123 (80.49%), Query Frame = 1

Query:   58 GAHGKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANK 426
            G   K +    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   KP  +K
Sbjct:    8 GFSSKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKPAKSK 130

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BLAST of Histone H2A vs. Ensembl Cavefish
Match: ENSAMXT00000025817.2 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000522.1:47764:48404:-1 gene:ENSAMXG00000025091.2 transcript:ENSAMXT00000025817.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 174.096 bits (440), Expect = 5.072e-56
Identity = 83/120 (69.17%), Postives = 98/120 (81.67%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANK 426
            GK +    +RSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   K V  K
Sbjct:   11 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKAVKAK 130

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BLAST of Histone H2A vs. Ensembl Cavefish
Match: ENSAMXT00000050088.1 (pep primary_assembly:Astyanax_mexicanus-2.0:21:10166233:10171033:1 gene:ENSAMXG00000038836.1 transcript:ENSAMXT00000050088.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 173.326 bits (438), Expect = 9.042e-56
Identity = 83/120 (69.17%), Postives = 98/120 (81.67%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANK 426
            GK +    +RSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   K V  K
Sbjct:   12 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKAVKAK 131

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BLAST of Histone H2A vs. Ensembl Cavefish
Match: ENSAMXT00000026274.2 (pep primary_assembly:Astyanax_mexicanus-2.0:21:10145526:10150789:1 gene:ENSAMXG00000025549.2 transcript:ENSAMXT00000026274.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 171.785 bits (434), Expect = 4.898e-55
Identity = 81/115 (70.43%), Postives = 96/115 (83.48%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNK 411
            GK +    +RSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   K
Sbjct:    9 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEK 123

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BLAST of Histone H2A vs. Ensembl Cavefish
Match: h2ax (H2A.X variant histone [Source:NCBI gene;Acc:394048])

HSP 1 Score: 170.629 bits (431), Expect = 1.270e-54
Identity = 80/111 (72.07%), Postives = 95/111 (85.59%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            GK +    +RSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK
Sbjct:    9 GKARAKSKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK 119

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BLAST of Histone H2A vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011253.1 (pep scaffold:Pmarinus_7.0:GL479154:926813:927238:-1 gene:ENSPMAG00000010226.1 transcript:ENSPMAT00000011253.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 177.948 bits (450), Expect = 3.674e-58
Identity = 85/133 (63.91%), Postives = 104/133 (78.20%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENRAPKVIESQEF 465
            GK +    SRSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYL+AEILELAGNAARDNKK+RI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ  LLPK   +  ++      K  +SQE+
Sbjct:    9 GKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLSAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGQAASSGGKAGKKSSQSQEY 141

[Close]

BLAST of Histone H2A vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002388.1 (pep scaffold:Pmarinus_7.0:GL476925:193851:194294:1 gene:ENSPMAG00000002177.1 transcript:ENSPMAT00000002388.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 170.244 bits (430), Expect = 3.251e-55
Identity = 82/122 (67.21%), Postives = 101/122 (82.79%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK--TPNKPVANK 426
            GK +    SRSSRAGL FPVGRVHRLLRKG + +R+G GAPVY++A+LEYL+AEILELAGNAARDNKK+RI PRH+ LA++ND EL++L+  VTI+QGGV+PNIQ  LLPK  + N P+A K
Sbjct:    9 GKSRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLSAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLMGGVTIAQGGVLPNIQAVLLPKKTSQNHPLACK 130

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BLAST of Histone H2A vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005338.1 (pep scaffold:Pmarinus_7.0:GL476820:708214:709027:-1 gene:ENSPMAG00000004859.1 transcript:ENSPMAT00000005338.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 167.933 bits (424), Expect = 2.224e-54
Identity = 78/111 (70.27%), Postives = 95/111 (85.59%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            GK +    SRSSRAGL FPVGRVHRLLRKG + +R+G GAPVY++A+LEYL+AEILELAGNAARDNKK+RI PRH+ LA++ND EL++L+  VTI+QGGV+PNIQ  LLPK
Sbjct:    9 GKSRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLSAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLMGGVTIAQGGVLPNIQAVLLPK 119

[Close]

BLAST of Histone H2A vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011166.1 (pep scaffold:Pmarinus_7.0:GL476820:1027708:1028088:1 gene:ENSPMAG00000010139.1 transcript:ENSPMAT00000011166.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 164.851 bits (416), Expect = 3.142e-53
Identity = 77/111 (69.37%), Postives = 94/111 (84.68%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            GK +    SRSSRAGL FPVGRVHRLL KG + +R+G GAPVY++A+LEYL+AEILELAGNAARDNKK+RI PRH+ LA++ND EL++L+  VTI+QGGV+PNIQ  LLPK
Sbjct:    9 GKSRAKAKSRSSRAGLQFPVGRVHRLLCKGNYAQRVGAGAPVYLAAVLEYLSAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLMGGVTIAQGGVLPNIQAVLLPK 119

[Close]

BLAST of Histone H2A vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011165.1 (pep scaffold:Pmarinus_7.0:GL476820:1017376:1017756:1 gene:ENSPMAG00000010138.1 transcript:ENSPMAT00000011165.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 162.54 bits (410), Expect = 2.823e-52
Identity = 76/111 (68.47%), Postives = 93/111 (83.78%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            GK +    SRSSRAGL FPVGRVHRLLRKG + +R+  G PVY++A+LEYL+AEILELAGNAARDNKK+RI PRH+ LA++ND EL++L+  VTI+QGGV+PNIQ  LLPK
Sbjct:    9 GKSRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAQRVVAGTPVYLAAVLEYLSAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLMGGVTIAQGGVLPNIQAVLLPK 119

[Close]

BLAST of Histone H2A vs. Ensembl Yeast
Match: HTA2 (Histone H2A; core histone protein required for chromatin assembly and chromosome function; one of two nearly identical (see also HTA1) subtypes; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p [Source:SGD;Acc:S000000099])

HSP 1 Score: 165.236 bits (417), Expect = 1.888e-53
Identity = 77/107 (71.96%), Postives = 93/107 (86.92%), Query Frame = 1

Query:   91 SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNK 411
            SRS++AGLTFPVGRVHRLLR+G + +RIG GAPVY++A+LEYL AEILELAGNAARDNKK+RI PRH+ LAI+ND EL++LL +VTI+QGGV+PNI   LLPK   K
Sbjct:   18 SRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK 124

[Close]

BLAST of Histone H2A vs. Ensembl Yeast
Match: HTA1 (Histone H2A; core histone protein required for chromatin assembly and chromosome function; one of two nearly identical subtypes (see also HTA2); DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p; N-terminally propionylated in vivo [Source:SGD;Acc:S000002633])

HSP 1 Score: 165.236 bits (417), Expect = 1.888e-53
Identity = 77/107 (71.96%), Postives = 93/107 (86.92%), Query Frame = 1

Query:   91 SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNK 411
            SRS++AGLTFPVGRVHRLLR+G + +RIG GAPVY++A+LEYL AEILELAGNAARDNKK+RI PRH+ LAI+ND EL++LL +VTI+QGGV+PNI   LLPK   K
Sbjct:   18 SRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK 124

[Close]

BLAST of Histone H2A vs. Ensembl Yeast
Match: HTZ1 (Histone variant H2AZ; exchanged for histone H2A in nucleosomes by the SWR1 complex; involved in transcriptional regulation through prevention of the spread of silent heterochromatin; Htz1p-containing nucleosomes facilitate RNA Pol II passage by affecting correct assembly and modification status of RNA Pol II elongation complexes and by favoring efficient nucleosome remodeling [Source:SGD;Acc:S000005372])

HSP 1 Score: 113.62 bits (283), Expect = 4.018e-33
Identity = 57/105 (54.29%), Postives = 76/105 (72.38%), Query Frame = 1

Query:  100 SRAGLTFPVGRVHRLLRKGKFGE-RIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNK 411
            +RAGL FPVGR+ R L++   G  R+G  A +Y++A+LEYLTAE+LELAGNAA+D K  RI PRH+ LAI+ D EL  L+++ TI+ GGV+P+I   LL K   K
Sbjct:   27 ARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIRA-TIASGGVLPHINKALLLKVEKK 130

[Close]

BLAST of Histone H2A vs. Ensembl Nematostella
Match: EDO49641 (Histone H2A [Source:UniProtKB/TrEMBL;Acc:A7RFQ0])

HSP 1 Score: 178.333 bits (451), Expect = 4.092e-58
Identity = 86/134 (64.18%), Postives = 106/134 (79.10%), Query Frame = 1

Query:   67 GKVKKLQ-NSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENRAPKVIESQEF 465
            GK+ K +  +RSSRAGL FPVGR+HR LRKG + ER+G GAPVYM+A+LEYLTAEILELAGNAARDNKKSRI PRH+ LA++ND EL++LL+ VTI+QGGV+PNIQ  LLPK  N   + K  +     +SQE+
Sbjct:    7 GKINKSKVKTRSSRAGLQFPVGRIHRFLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIVPRHLQLAVRNDEELNKLLQGVTIAQGGVLPNIQAVLLPKKSNTGGSGKSKKGLGSSQSQEY 140

[Close]

BLAST of Histone H2A vs. Ensembl Nematostella
Match: EDO48283 (Histone H2A [Source:UniProtKB/TrEMBL;Acc:A7RJL4])

HSP 1 Score: 170.244 bits (430), Expect = 5.155e-55
Identity = 81/116 (69.83%), Postives = 98/116 (84.48%), Query Frame = 1

Query:   67 GKVKKLQN-SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNK 411
            GK K  ++ +RSSRAGL FPVGR+HRLLRKG + ER+G GAPVYM+A+LEYL+AEILELAGNAARDNKK+RI PRH+ LA++ND EL+ LL  VTI+QGGV+PNIQ+ LLPK   K
Sbjct:    7 GKAKGTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNRLLSGVTIAQGGVLPNIQSVLLPKKTEK 122

[Close]

BLAST of Histone H2A vs. Ensembl Nematostella
Match: EDO31130 (Histone H2A [Source:UniProtKB/TrEMBL;Acc:A7SYT5])

HSP 1 Score: 169.859 bits (429), Expect = 7.321e-55
Identity = 81/118 (68.64%), Postives = 96/118 (81.36%), Query Frame = 1

Query:   58 GAHGKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNK 411
            G  GK +    SRS+RAGL FPVGRVHR LRKG + ER+G GAPVYM+A+LEYL+AEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   K
Sbjct:    5 GKGGKSRAKGKSRSARAGLQFPVGRVHRFLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKRSEK 122

[Close]

BLAST of Histone H2A vs. Ensembl Nematostella
Match: EDO34611 (Histone H2A [Source:UniProtKB/TrEMBL;Acc:A7SNV0])

HSP 1 Score: 169.088 bits (427), Expect = 1.197e-54
Identity = 81/118 (68.64%), Postives = 95/118 (80.51%), Query Frame = 1

Query:   58 GAHGKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNK 411
            G  GK +    SRS+RAGL FPVGRVHR LRKG + ER+G GAPVYM+A+LEYL+AEILELAGNAARDNKK+RI PRH+ LA++ND EL+ LL  VTI+QGGV+PNIQ  LLPK   K
Sbjct:    5 GKGGKSRAKGKSRSARAGLQFPVGRVHRFLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNRLLHGVTIAQGGVLPNIQAVLLPKKSEK 122

[Close]

BLAST of Histone H2A vs. Ensembl Nematostella
Match: EDO46356 (Histone H2A [Source:UniProtKB/TrEMBL;Acc:A7RQF5])

HSP 1 Score: 166.777 bits (421), Expect = 9.649e-54
Identity = 80/118 (67.80%), Postives = 95/118 (80.51%), Query Frame = 1

Query:   58 GAHGKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNK 411
            G  GK +    SRS++AGL FPVGRVHR LRKG + +R+G GAPVYM+A+LEYL+AEILELAGNAARDNKK+RI PRH+ LA++ND EL+ LL  VTISQGGV+PNIQ  LLPK   K
Sbjct:    5 GKGGKSRAKGKSRSAKAGLQFPVGRVHRFLRKGNYAKRVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNRLLHGVTISQGGVLPNIQAVLLPKKSEK 122

[Close]

BLAST of Histone H2A vs. Ensembl Medaka
Match: ENSORLT00000027984.1 (pep primary_assembly:ASM223467v1:1:8921530:8926502:-1 gene:ENSORLG00000030081.1 transcript:ENSORLT00000027984.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 178.333 bits (451), Expect = 1.181e-57
Identity = 84/123 (68.29%), Postives = 100/123 (81.30%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENR 435
            GK +    +RSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   KP   K+ R
Sbjct:    9 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKPAKTKQGR 131

[Close]

BLAST of Histone H2A vs. Ensembl Medaka
Match: ENSORLT00000000203.2 (pep primary_assembly:ASM223467v1:1:3742590:3747233:-1 gene:ENSORLG00000024975.1 transcript:ENSORLT00000000203.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 177.948 bits (450), Expect = 1.514e-57
Identity = 86/128 (67.19%), Postives = 102/128 (79.69%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENRAPKVI 450
            GK +    +RSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   KP   K NR  + I
Sbjct:    9 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKPNGKKTNRQQRNI 136

[Close]

BLAST of Histone H2A vs. Ensembl Medaka
Match: ENSORLT00000042228.1 (pep primary_assembly:ASM223467v1:23:22958305:22963215:1 gene:ENSORLG00000027073.1 transcript:ENSORLT00000042228.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 177.178 bits (448), Expect = 3.592e-57
Identity = 84/120 (70.00%), Postives = 100/120 (83.33%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANK 426
            GK +    +RSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   KPV +K
Sbjct:    9 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKPVKSK 128

[Close]

BLAST of Histone H2A vs. Ensembl Medaka
Match: ENSORLT00000034627.1 (pep primary_assembly:ASM223467v1:1:1239146:1240518:-1 gene:ENSORLG00000022956.1 transcript:ENSORLT00000034627.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 175.637 bits (444), Expect = 1.146e-56
Identity = 83/121 (68.60%), Postives = 99/121 (81.82%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKE 429
            GK +    +RSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   KP   K+
Sbjct:    9 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKPAKTKK 129

[Close]

BLAST of Histone H2A vs. Ensembl Medaka
Match: ENSORLT00000042751.1 (pep primary_assembly:ASM223467v1:1:3319702:3323229:-1 gene:ENSORLG00000023254.1 transcript:ENSORLT00000042751.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 175.252 bits (443), Expect = 2.582e-56
Identity = 83/122 (68.03%), Postives = 99/122 (81.15%), Query Frame = 1

Query:   67 GKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKEN 432
            GK +    +RSSRAGL FPVGRVHRLLRKG + ER+G GAPVY++A+LEYLTAEILELAGNAARDNKK+RI PRH+ LA++ND EL++LL  VTI+QGGV+PNIQ  LLPK   KP    +N
Sbjct:    9 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKPKTTGKN 130

[Close]

BLAST of Histone H2A vs. Planmine SMEST
Match: SMESG000072071.1 (SMESG000072071.1)

HSP 1 Score: 289.271 bits (739), Expect = 1.657e-101
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1

Query:   37 MTKKENIGAHGKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENRAPKVIESQEF 465
            MTKKENIGAHGKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENRAPKVIESQEF
Sbjct:    1 MTKKENIGAHGKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENRAPKVIESQEF 143

[Close]

BLAST of Histone H2A vs. Planmine SMEST
Match: SMESG000006040.1 (SMESG000006040.1)

HSP 1 Score: 170.244 bits (430), Expect = 1.281e-54
Identity = 84/127 (66.14%), Postives = 102/127 (80.31%), Query Frame = 1

Query:   58 GAHGKVKKLQN-SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPKTPNKPVANKENR 435
            G  GK  K Q+ +RSSRAGL FPVGR+HR LRKG F ER+G GAPVY++A+LEYL AE+LELAGNAARDNKKSRI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ +LLPK   +   + E+R
Sbjct:    5 GKAGKTTKSQSKTRSSRAGLQFPVGRIHRKLRKGNFAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQISLLPKKAEEKKRDLEDR 131

[Close]

BLAST of Histone H2A vs. Planmine SMEST
Match: SMESG000067932.1 (SMESG000067932.1)

HSP 1 Score: 169.859 bits (429), Expect = 1.344e-54
Identity = 85/122 (69.67%), Postives = 100/122 (81.97%), Query Frame = 1

Query:   58 GAHGKVKKLQN-SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLP-KTPNKPV 417
            G  GK  + Q+ +RSSRAGL FPVGR+HR LRKG F ER+G GAPVY++A+LEYL AE+LELAGNAARDNKKSRI PRH+ LAI+ND EL++LL  VTISQGGV+PNIQ+ LLP KT  KP 
Sbjct:    6 GKAGKTSRNQSKTRSSRAGLQFPVGRIHRKLRKGNFAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGGVTISQGGVIPNIQSALLPKKTEEKPA 127

[Close]

BLAST of Histone H2A vs. Planmine SMEST
Match: SMESG000018807.1 (SMESG000018807.1)

HSP 1 Score: 168.703 bits (426), Expect = 3.261e-54
Identity = 79/114 (69.30%), Postives = 96/114 (84.21%), Query Frame = 1

Query:   58 GAHGKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            G  GK +    SRS RAGL FPVGR+HR+LRKG + ER+G GAPVY++A+LEYL AE+LELAGNAARDNKK+RI PRH+ LAI+ND EL++LL SVTI+QGGV+PNIQ+ LLPK
Sbjct:    5 GKGGKSRNKAKSRSVRAGLQFPVGRIHRMLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGSVTIAQGGVLPNIQSVLLPK 118

[Close]

BLAST of Histone H2A vs. Planmine SMEST
Match: SMESG000006040.1 (SMESG000006040.1)

HSP 1 Score: 168.703 bits (426), Expect = 3.568e-54
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 1

Query:   58 GAHGKVKKLQN-SRSSRAGLTFPVGRVHRLLRKGKFGERIGHGAPVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELLKSVTISQGGVMPNIQNTLLPK 399
            G  GK  K Q+ +RSSRAGL FPVGR+HR LRKG F ER+G GAPVY++A+LEYL AE+LELAGNAARDNKKSRI PRH+ LAI+ND EL++LL  VTI+QGGV+PNIQ +LLPK
Sbjct:    5 GKAGKTTKSQSKTRSSRAGLQFPVGRIHRKLRKGNFAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQISLLPK 119

The following BLAST results are available for this feature:

BLAST of Histone H2A vs. Ensembl Human
BLAST of Histone H2A vs. Ensembl Celegans
BLAST of Histone H2A vs. Ensembl Fly
BLAST of Histone H2A vs. Ensembl Zebrafish
BLAST of Histone H2A vs. Ensembl Xenopus
BLAST of Histone H2A vs. Ensembl Mouse
BLAST of Histone H2A vs. UniProt/SwissProt
BLAST of Histone H2A vs. TrEMBL
BLAST of Histone H2A vs. Ensembl Cavefish
BLAST of Histone H2A vs. Ensembl Sea Lamprey
BLAST of Histone H2A vs. Ensembl Yeast
BLAST of Histone H2A vs. Ensembl Nematostella
BLAST of Histone H2A vs. Ensembl Medaka
BLAST of Histone H2A vs. Planmine SMEST

BLAST of Histone H2A vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
H2AJ	6.710e-56	74.77	H2A.J histone [Source:HGNC Symbol;Acc:HGNC:14456]	[more]
H2AJ	6.710e-56	74.77	H2A.J histone [Source:HGNC Symbol;Acc:HGNC:14456]	[more]
H2AC20	1.122e-55	74.77	H2A clustered histone 20 [Source:HGNC Symbol;Acc:H...	[more]
H2AC19	1.473e-55	74.77	H2A clustered histone 19 [Source:HGNC Symbol;Acc:H...	[more]
H2AC18	1.473e-55	74.77	H2A clustered histone 18 [Source:HGNC Symbol;Acc:H...	[more]

BLAST of Histone H2A vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
his-35	5.155e-53	69.03	Histone H2A [Source:UniProtKB/TrEMBL;Acc:Q27485]	[more]
his-35	5.155e-53	69.03	Histone H2A [Source:UniProtKB/TrEMBL;Acc:Q27485]	[more]
his-68	7.638e-53	72.82	Histone H2A [Source:UniProtKB/Swiss-Prot;Acc:P095...	[more]
his-65	7.638e-53	72.82	Histone H2A [Source:UniProtKB/Swiss-Prot;Acc:P095...	[more]
his-61	7.638e-53	72.82	Histone H2A [Source:UniProtKB/Swiss-Prot;Acc:P095...	[more]

BLAST of Histone H2A vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
His2A:CG33853	5.635e-53	71.03	gene:FBgn0053853 transcript:FBtr0091857	[more]
His2A:CG33859	5.635e-53	71.03	gene:FBgn0053859 transcript:FBtr0091863	[more]
His2A:CG33856	5.635e-53	71.03	gene:FBgn0053856 transcript:FBtr0091860	[more]
His2A:CG33850	5.697e-53	71.03	gene:FBgn0053850 transcript:FBtr0091854	[more]
His2A:CG33847	5.697e-53	71.03	gene:FBgn0053847 transcript:FBtr0091851	[more]

BLAST of Histone H2A vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
h2ax1	6.309e-57	70.00	H2A.X variant histone family member 1 [Source:ZFIN...	[more]
h2ax1	6.309e-57	70.00	H2A.X variant histone family member 1 [Source:ZFIN...	[more]
si:ch211-113a14.19	2.300e-55	68.33	si:ch211-113a14.19 [Source:ZFIN;Acc:ZDB-GENE-12121...	[more]
si:ch211-113a14.19	2.300e-55	68.33	si:ch211-113a14.19 [Source:ZFIN;Acc:ZDB-GENE-12121...	[more]
si:ch211-113a14.19	2.300e-55	68.33	si:ch211-113a14.19 [Source:ZFIN;Acc:ZDB-GENE-12121...	[more]

BLAST of Histone H2A vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
h2ac1	5.947e-57	62.59	H2A clustered histone 1 [Source:NCBI gene;Acc:5949...	[more]
ENSXETT00000000447.1	7.788e-57	64.89	pep primary_assembly:Xenopus_tropicalis_v9.1:3:124...	[more]
lyl1	5.119e-56	61.15	lymphoblastic leukemia associated hematopoiesis re...	[more]
lyl1	6.123e-56	61.15	lymphoblastic leukemia associated hematopoiesis re...	[more]
trps1	1.121e-55	69.17	transcriptional repressor GATA binding 1 [Source:X...	[more]

BLAST of Histone H2A vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
H2ac21	5.918e-56	70.49	H2A clustered histone 21 [Source:MGI Symbol;Acc:MG...	[more]
H2aj	6.395e-56	71.07	H2J.A histone [Source:MGI Symbol;Acc:MGI:3606192]	[more]
H2aj	7.640e-56	74.77	H2J.A histone [Source:MGI Symbol;Acc:MGI:3606192]	[more]
H2ac20	7.700e-56	74.77	H2A clustered histone 20 [Source:MGI Symbol;Acc:MG...	[more]
H2ac18	1.011e-55	74.77	H2A clustered histone 18 [Source:MGI Symbol;Acc:MG...	[more]

BLAST of Histone H2A vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P70082\|H2AJ_CHICK	1.080e-55	75.68	Histone H2A.J OS=Gallus gallus OX=9031 GN=H2A-IX P...	[more]
sp\|Q9BTM1\|H2AJ_HUMAN	3.223e-55	74.77	Histone H2A.J OS=Homo sapiens OX=9606 GN=H2AJ PE=1...	[more]
sp\|Q3ZBX9\|H2AJ_BOVIN	3.223e-55	74.77	Histone H2A.J OS=Bos taurus OX=9913 GN=H2AJ PE=2 S...	[more]
sp\|Q4R3X5\|H2AJ_MACFA	3.294e-55	74.77	Histone H2A.J OS=Macaca fascicularis OX=9541 GN=H2...	[more]
sp\|Q64522\|H2A2B_MOUSE	4.139e-55	70.49	Histone H2A type 2-B OS=Mus musculus OX=10090 GN=H...	[more]

BLAST of Histone H2A vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A3B4XIT1	1.357e-55	66.41	Histone H2A OS=Seriola lalandi dorsalis OX=1841481...	[more]
A0A3B4VF88	1.357e-55	66.41	Histone H2A OS=Seriola dumerili OX=41447 PE=3 SV=1	[more]
I3JF64	1.654e-55	70.40	Histone H2A OS=Oreochromis niloticus OX=8128 GN=LO...	[more]
A0A3Q1IF10	2.127e-55	69.60	Histone H2A OS=Anabas testudineus OX=64144 PE=3 SV...	[more]
A0A3B3Z2X9	2.622e-55	66.41	Histone H2A OS=Poecilia mexicana OX=48701 PE=3 SV=...	[more]

BLAST of Histone H2A vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSAMXT00000040985.1	1.856e-56	68.29	pep primary_assembly:Astyanax_mexicanus-2.0:20:275...	[more]
ENSAMXT00000025817.2	5.072e-56	69.17	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
ENSAMXT00000050088.1	9.042e-56	69.17	pep primary_assembly:Astyanax_mexicanus-2.0:21:101...	[more]
ENSAMXT00000026274.2	4.898e-55	70.43	pep primary_assembly:Astyanax_mexicanus-2.0:21:101...	[more]
h2ax	1.270e-54	72.07	H2A.X variant histone [Source:NCBI gene;Acc:394048...	[more]

BLAST of Histone H2A vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSPMAT00000011253.1	3.674e-58	63.91	pep scaffold:Pmarinus_7.0:GL479154:926813:927238:-...	[more]
ENSPMAT00000002388.1	3.251e-55	67.21	pep scaffold:Pmarinus_7.0:GL476925:193851:194294:1...	[more]
ENSPMAT00000005338.1	2.224e-54	70.27	pep scaffold:Pmarinus_7.0:GL476820:708214:709027:-...	[more]
ENSPMAT00000011166.1	3.142e-53	69.37	pep scaffold:Pmarinus_7.0:GL476820:1027708:1028088...	[more]
ENSPMAT00000011165.1	2.823e-52	68.47	pep scaffold:Pmarinus_7.0:GL476820:1017376:1017756...	[more]

BLAST of Histone H2A vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 3


Match Name	E-value	Identity	Description
HTA2	1.888e-53	71.96	Histone H2A; core histone protein required for chr...	[more]
HTA1	1.888e-53	71.96	Histone H2A; core histone protein required for chr...	[more]
HTZ1	4.018e-33	54.29	Histone variant H2AZ; exchanged for histone H2A in...	[more]

BLAST of Histone H2A vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO49641	4.092e-58	64.18	Histone H2A [Source:UniProtKB/TrEMBL;Acc:A7RFQ0]	[more]
EDO48283	5.155e-55	69.83	Histone H2A [Source:UniProtKB/TrEMBL;Acc:A7RJL4]	[more]
EDO31130	7.321e-55	68.64	Histone H2A [Source:UniProtKB/TrEMBL;Acc:A7SYT5]	[more]
EDO34611	1.197e-54	68.64	Histone H2A [Source:UniProtKB/TrEMBL;Acc:A7SNV0]	[more]
EDO46356	9.649e-54	67.80	Histone H2A [Source:UniProtKB/TrEMBL;Acc:A7RQF5]	[more]

BLAST of Histone H2A vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSORLT00000027984.1	1.181e-57	68.29	pep primary_assembly:ASM223467v1:1:8921530:8926502...	[more]
ENSORLT00000000203.2	1.514e-57	67.19	pep primary_assembly:ASM223467v1:1:3742590:3747233...	[more]
ENSORLT00000042228.1	3.592e-57	70.00	pep primary_assembly:ASM223467v1:23:22958305:22963...	[more]
ENSORLT00000034627.1	1.146e-56	68.60	pep primary_assembly:ASM223467v1:1:1239146:1240518...	[more]
ENSORLT00000042751.1	2.582e-56	68.03	pep primary_assembly:ASM223467v1:1:3319702:3323229...	[more]

BLAST of Histone H2A vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000072071.1	1.657e-101	100.00	SMESG000072071.1	[more]
SMESG000006040.1	1.281e-54	66.14	SMESG000006040.1	[more]
SMESG000067932.1	1.344e-54	69.67	SMESG000067932.1	[more]
SMESG000018807.1	3.261e-54	69.30	SMESG000018807.1	[more]
SMESG000006040.1	3.568e-54	71.30	SMESG000006040.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30002436 ID=SMED30002436|Name=Histone H2A|organism=Schmidtea mediterranea sexual|type=transcript|length=565bp
TATATCGCAATTTGTTTATCATTTTAAAATTTGAATATGACAAAGAAAGA
AAATATTGGTGCTCATGGAAAAGTCAAGAAGCTACAAAATTCTCGATCTT
CTCGTGCTGGACTAACTTTTCCAGTTGGCCGCGTTCACCGTTTGTTACGA
AAAGGAAAGTTTGGTGAAAGAATTGGACATGGTGCGCCAGTCTATATGTC
AGCTATTCTTGAATATTTAACTGCTGAAATTTTGGAGTTGGCTGGAAACG
CGGCAAGAGATAATAAGAAATCAAGAATTGCTCCTCGTCATATTTTATTG
GCTATTAAAAATGATTCTGAATTGAGCGAGTTGCTGAAATCTGTTACTAT
TTCTCAAGGTGGAGTTATGCCAAATATCCAAAATACTTTGCTACCAAAAA
CACCGAATAAGCCAGTTGCGAACAAAGAGAATCGAGCACCTAAAGTAATC
GAGTCTCAAGAATTTTGAATATTTCATAGATTTTGTAATAGATGTGCTAG
ATTTTGTATGCTACTATTTGGGTTAGCTAGAATAGAATATATGTTTTTTT
GATGTTGAAAAAAAA

protein sequence of SMED30002436-orf-1

>SMED30002436-orf-1 ID=SMED30002436-orf-1|Name=SMED30002436-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=144bp
MTKKENIGAHGKVKKLQNSRSSRAGLTFPVGRVHRLLRKGKFGERIGHGA
PVYMSAILEYLTAEILELAGNAARDNKKSRIAPRHILLAIKNDSELSELL
KSVTISQGGVMPNIQNTLLPKTPNKPVANKENRAPKVIESQEF*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **biological process**
Term	Definition
GO:0042742	defense response to bacterium

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000014	zeta neoblast
PLANA:0000419	prepharyngeal region
PLANA:0000420	parapharyngeal region
PLANA:0000429	neoblast
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR032454	Histone_H2A_C
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR032458	Histone_H2A_CS

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus
GO:0000786	nucleosome
GO:0005694	chromosome

Vocabulary: **molecular function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 60..73 score: 90.95 coord: 45..60 score: 68.63 coord: 74..88 score: 71.62 coord: 102..120 score: 64.91 coord: 16..38 score: 67.74
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 6..125 e-value: 2.9E-68 score: 242.8
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 11..121 e-value: 2.03382E-62 score: 185.231
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 95..125 e-value: 1.0E-14 score: 53.9
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 6..130 e-value: 1.4E-56 score: 191.7
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 10..128
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 15..91 e-value: 1.1E-15 score: 58.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 11..129
None	No IPR available	PANTHER	PTHR23430:SF20	CORE HISTONE MACRO-H2A.1	coord: 11..129
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 24..30