DNA-binding protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30002377 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9
Homology
BLAST of DNA-binding protein vs. Ensembl Human
Match: MEOX1 (mesenchyme homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7013]) HSP 1 Score: 105.145 bits (261), Expect = 5.633e-27 Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K Q+ ELE EF+ HNYLTRLRRYE+AV L+L+ERQ+KVWFQNRRMK KR KG Sbjct: 54 SKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKG 116
BLAST of DNA-binding protein vs. Ensembl Human
Match: MEOX1 (mesenchyme homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7013]) HSP 1 Score: 105.531 bits (262), Expect = 6.049e-26 Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K Q+ ELE EF+ HNYLTRLRRYE+AV L+L+ERQ+KVWFQNRRMK KR KG Sbjct: 169 SKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKG 231
BLAST of DNA-binding protein vs. Ensembl Human
Match: MEOX2 (mesenchyme homeobox 2 [Source:HGNC Symbol;Acc:HGNC:7014]) HSP 1 Score: 105.531 bits (262), Expect = 1.632e-25 Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K QI ELE EF+ HNYLTRLRRYE+AV L+L ERQ+KVWFQNRRMK KR KG Sbjct: 185 SKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKG 247
BLAST of DNA-binding protein vs. Ensembl Human
Match: AC004080.3 (HOXA10-HOXA9 readthrough) HSP 1 Score: 77.7962 bits (190), Expect = 3.954e-17 Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 3 Query: 837 RKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 RK+R ++K Q LELEKEF + YLTR RRYE+A LNL ERQ+K+WFQNRRMK K+ Sbjct: 47 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 103
BLAST of DNA-binding protein vs. Ensembl Human
Match: MNX1 (motor neuron and pancreas homeobox 1 [Source:HGNC Symbol;Acc:HGNC:4979]) HSP 1 Score: 79.7221 bits (195), Expect = 4.805e-17 Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 3 Query: 825 FSKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSK 1013 K R+ RTAF+ Q+LELE +F ++ YL+R +R+E+A +L L E Q+K+WFQNRRMK KRSK Sbjct: 26 LGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSK 88
BLAST of DNA-binding protein vs. Ensembl Celegans
Match: lin-39 (Homeobox protein lin-39 [Source:UniProtKB/Swiss-Prot;Acc:P34684]) HSP 1 Score: 85.5001 bits (210), Expect = 5.478e-19 Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = 3 Query: 834 QRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 ++++RTA+++ Q+LELEKEF H YLTR RR E+A +L L ERQ+K+WFQNRRMK K+ Sbjct: 165 EKRQRTAYTRNQVLELEKEFHTHKYLTRKRRIEVAHSLMLTERQVKIWFQNRRMKHKK 222
BLAST of DNA-binding protein vs. Ensembl Celegans
Match: lin-39 (Homeobox protein lin-39 [Source:UniProtKB/Swiss-Prot;Acc:P34684]) HSP 1 Score: 85.5001 bits (210), Expect = 5.478e-19 Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = 3 Query: 834 QRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 ++++RTA+++ Q+LELEKEF H YLTR RR E+A +L L ERQ+K+WFQNRRMK K+ Sbjct: 165 EKRQRTAYTRNQVLELEKEFHTHKYLTRKRRIEVAHSLMLTERQVKIWFQNRRMKHKK 222
BLAST of DNA-binding protein vs. Ensembl Celegans
Match: ceh-12 (Homeobox protein ceh-12 [Source:UniProtKB/Swiss-Prot;Acc:P17487]) HSP 1 Score: 81.2629 bits (199), Expect = 4.492e-18 Identity = 37/61 (60.66%), Postives = 49/61 (80.33%), Query Frame = 3 Query: 825 FSKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 + K R+ RTAFS Q+++LEK+FS + YL+R RRY+LA L+L+E QIK+WFQNRRMK KR Sbjct: 107 WGKMRRPRTAFSSEQLVQLEKQFSDNRYLSRPRRYQLAQQLSLSETQIKIWFQNRRMKNKR 167
BLAST of DNA-binding protein vs. Ensembl Celegans
Match: ceh-12 (Homeobox protein ceh-12 [Source:UniProtKB/Swiss-Prot;Acc:P17487]) HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-17 Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 3 Query: 837 RKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 R+ RTAFS Q+++LEK+FS + YL+R RRY+LA L+L+E QIK+WFQNRRMK KR Sbjct: 2 RRPRTAFSSEQLVQLEKQFSDNRYLSRPRRYQLAQQLSLSETQIKIWFQNRRMKNKR 58
BLAST of DNA-binding protein vs. Ensembl Celegans
Match: mab-5 (Homeobox protein mab-5 [Source:UniProtKB/Swiss-Prot;Acc:P10038]) HSP 1 Score: 78.1814 bits (191), Expect = 7.655e-17 Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 3 Query: 837 RKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR-SKGQ 1019 ++ R +S+ Q LELEKEF H YLTR RR E++ L+L ERQ+K+WFQNRRMK K+ +KG+ Sbjct: 118 KRTRQTYSRSQTLELEKEFHYHKYLTRKRRQEISETLHLTERQVKIWFQNRRMKHKKEAKGE 179
BLAST of DNA-binding protein vs. Ensembl Fly
Match: btn (gene:FBgn0014949 transcript:FBtr0084278) HSP 1 Score: 101.293 bits (251), Expect = 1.216e-25 Identity = 47/63 (74.60%), Postives = 51/63 (80.95%), Query Frame = 3 Query: 825 FSKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSK 1013 S RKERTAFSK Q+ +LE EF NYLTRLRRYE+AVAL L ERQ+KVWFQNRRMKCKR K Sbjct: 83 ISSNRKERTAFSKTQLKQLEAEFCYSNYLTRLRRYEIAVALELTERQVKVWFQNRRMKCKRIK 145
BLAST of DNA-binding protein vs. Ensembl Fly
Match: exex (gene:FBgn0041156 transcript:FBtr0076751) HSP 1 Score: 85.8853 bits (211), Expect = 4.438e-18 Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 3 Query: 825 FSKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSK 1013 K R+ RTAF+ Q+LELEK+F + YL+R +R+E+A L L+E Q+K+WFQNRRMK KRSK Sbjct: 436 LGKTRRPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKRSK 498
BLAST of DNA-binding protein vs. Ensembl Fly
Match: pb (gene:FBgn0051481 transcript:FBtr0089279) HSP 1 Score: 83.5741 bits (205), Expect = 3.224e-17 Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 3 Query: 837 RKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 R+ RTA++ Q+LELEKEF + YL R RR E+A +L+L ERQ+KVWFQNRRMK KR Sbjct: 189 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKR 245
BLAST of DNA-binding protein vs. Ensembl Fly
Match: pb (gene:FBgn0051481 transcript:FBtr0089278) HSP 1 Score: 83.5741 bits (205), Expect = 3.354e-17 Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 3 Query: 837 RKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 R+ RTA++ Q+LELEKEF + YL R RR E+A +L+L ERQ+KVWFQNRRMK KR Sbjct: 194 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKR 250
BLAST of DNA-binding protein vs. Ensembl Fly
Match: pb (gene:FBgn0051481 transcript:FBtr0089277) HSP 1 Score: 83.5741 bits (205), Expect = 3.385e-17 Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 3 Query: 837 RKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 R+ RTA++ Q+LELEKEF + YL R RR E+A +L+L ERQ+KVWFQNRRMK KR Sbjct: 194 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKR 250
BLAST of DNA-binding protein vs. Ensembl Zebrafish
Match: meox2a (mesenchyme homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-080613-1]) HSP 1 Score: 105.145 bits (261), Expect = 1.317e-25 Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K QI ELE EF+ HNYLTRLRRYE+AV L+L ERQ+KVWFQNRRMK KR KG Sbjct: 185 SKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKG 247
BLAST of DNA-binding protein vs. Ensembl Zebrafish
Match: meox2a (mesenchyme homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-080613-1]) HSP 1 Score: 105.145 bits (261), Expect = 1.317e-25 Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K QI ELE EF+ HNYLTRLRRYE+AV L+L ERQ+KVWFQNRRMK KR KG Sbjct: 185 SKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKG 247
BLAST of DNA-binding protein vs. Ensembl Zebrafish
Match: meox2b (mesenchyme homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-060503-853]) HSP 1 Score: 104.76 bits (260), Expect = 1.530e-25 Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K QI ELE EF+ HNYLTRLRRYE+AV L+L ERQ+KVWFQNRRMK KR KG Sbjct: 171 SKPRKERTAFTKEQIRELESEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKG 233
BLAST of DNA-binding protein vs. Ensembl Zebrafish
Match: meox2b (mesenchyme homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-060503-853]) HSP 1 Score: 104.76 bits (260), Expect = 1.530e-25 Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K QI ELE EF+ HNYLTRLRRYE+AV L+L ERQ+KVWFQNRRMK KR KG Sbjct: 171 SKPRKERTAFTKEQIRELESEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKG 233
BLAST of DNA-binding protein vs. Ensembl Zebrafish
Match: meox1 (mesenchyme homeobox 1 [Source:NCBI gene;Acc:436723]) HSP 1 Score: 102.834 bits (255), Expect = 4.089e-25 Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 3 Query: 831 KQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 K RKERTAF+K Q+ ELE EF+ HNYLTRLRRYE+AV L+L ERQ+KVWFQNRRMK KR KG Sbjct: 169 KARKERTAFTKEQLRELEAEFTHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKG 230
BLAST of DNA-binding protein vs. Ensembl Xenopus
Match: meox2 (mesenchyme homeobox 2 [Source:NCBI gene;Acc:100144655]) HSP 1 Score: 105.145 bits (261), Expect = 1.925e-25 Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K QI ELE EF+ HNYLTRLRRYE+AV L+L ERQ+KVWFQNRRMK KR KG Sbjct: 181 SKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKG 243
BLAST of DNA-binding protein vs. Ensembl Xenopus
Match: ENSXETT00000012532.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:6:32900780:32902234:1 gene:ENSXETG00000005181.1 transcript:ENSXETT00000012532.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 82.0333 bits (201), Expect = 2.261e-17 Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 3 Query: 837 RKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 RK+R ++K Q LELEKEF + YLTR RRYE+A LNL ERQ+K+WFQNRRMK K+ Sbjct: 196 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 252
BLAST of DNA-binding protein vs. Ensembl Xenopus
Match: hnf4b (hepatocyte nuclear factor 4, beta [Source:Xenbase;Acc:XB-GENE-485826]) HSP 1 Score: 81.6481 bits (200), Expect = 3.927e-17 Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 3 Query: 837 RKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSK 1013 ++ RTA+++ Q+LELEKEF + Y++R RR ELAV LNL ER IK+WFQNRRMK K+ + Sbjct: 148 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 206
BLAST of DNA-binding protein vs. Ensembl Xenopus
Match: HOXD4 (homeobox D4 [Source:HGNC Symbol;Acc:HGNC:5138]) HSP 1 Score: 80.4925 bits (197), Expect = 4.983e-17 Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 3 Query: 837 RKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 ++ RTA+++ Q+LELEKEF + YLTR RR E+A +L L+ERQIK+WFQNRRMK K+ Sbjct: 148 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK 204
BLAST of DNA-binding protein vs. Ensembl Xenopus
Match: ppm1j (protein phosphatase, Mg2+/Mn2+ dependent 1J [Source:Xenbase;Acc:XB-GENE-941439]) HSP 1 Score: 80.8777 bits (198), Expect = 5.523e-17 Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 + ++ RTA+++ Q+LELEKEF + YLTR RR E+A L L+ERQIK+WFQNRRMK K+ Sbjct: 168 GEAKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHTLRLSERQIKIWFQNRRMKWKK 227
BLAST of DNA-binding protein vs. Ensembl Mouse
Match: Meox1 (mesenchyme homeobox 1 [Source:MGI Symbol;Acc:MGI:103220]) HSP 1 Score: 104.76 bits (260), Expect = 8.416e-26 Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K Q+ ELE EF+ HNYLTRLRRYE+AV L+L+ERQ+KVWFQNRRMK KR KG Sbjct: 168 SKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKG 230
BLAST of DNA-binding protein vs. Ensembl Mouse
Match: Meox2 (mesenchyme homeobox 2 [Source:MGI Symbol;Acc:MGI:103219]) HSP 1 Score: 105.145 bits (261), Expect = 1.404e-25 Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K QI ELE EF+ HNYLTRLRRYE+AV L+L ERQ+KVWFQNRRMK KR KG Sbjct: 184 SKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKG 246
BLAST of DNA-binding protein vs. Ensembl Mouse
Match: Pdx1 (pancreatic and duodenal homeobox 1 [Source:MGI Symbol;Acc:MGI:102851]) HSP 1 Score: 81.2629 bits (199), Expect = 3.969e-17 Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 3 Query: 837 RKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSK 1013 ++ RTA+++ Q+LELEKEF + Y++R RR ELAV LNL ER IK+WFQNRRMK K+ + Sbjct: 148 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 206
BLAST of DNA-binding protein vs. Ensembl Mouse
Match: Hoxa5 (homeobox A5 [Source:MGI Symbol;Acc:MGI:96177]) HSP 1 Score: 80.8777 bits (198), Expect = 5.067e-17 Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 3 Query: 831 KQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 + ++ RTA+++ Q LELEKEF + YLTR RR E+A AL L+ERQIK+WFQNRRMK K+ Sbjct: 194 EGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 252
BLAST of DNA-binding protein vs. Ensembl Mouse
Match: Hoxb4 (homeobox B4 [Source:MGI Symbol;Acc:MGI:96185]) HSP 1 Score: 80.1073 bits (196), Expect = 6.349e-17 Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 3 Query: 837 RKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 ++ RTA+++ Q+LELEKEF + YLTR RR E+A AL L+ERQIK+WFQNRRMK K+ Sbjct: 162 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKK 218
BLAST of DNA-binding protein vs. UniProt/SwissProt
Match: sp|P50221|MEOX1_HUMAN (Homeobox protein MOX-1 OS=Homo sapiens OX=9606 GN=MEOX1 PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.905e-25 Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K Q+ ELE EF+ HNYLTRLRRYE+AV L+L+ERQ+KVWFQNRRMK KR KG Sbjct: 169 SKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKG 231
BLAST of DNA-binding protein vs. UniProt/SwissProt
Match: sp|A2T779|MEOX1_PANTR (Homeobox protein MOX-1 OS=Pan troglodytes OX=9598 GN=MEOX1 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.935e-25 Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K Q+ ELE EF+ HNYLTRLRRYE+AV L+L+ERQ+KVWFQNRRMK KR KG Sbjct: 169 SKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKG 231
BLAST of DNA-binding protein vs. UniProt/SwissProt
Match: sp|A1YGA4|MEOX1_PANPA (Homeobox protein MOX-1 OS=Pan paniscus OX=9597 GN=MEOX1 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.089e-25 Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K Q+ ELE EF+ HNYLTRLRRYE+AV L+L+ERQ+KVWFQNRRMK KR KG Sbjct: 169 SKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKG 231
BLAST of DNA-binding protein vs. UniProt/SwissProt
Match: sp|A2T7T2|MEOX1_PONPY (Homeobox protein MOX-1 OS=Pongo pygmaeus OX=9600 GN=MEOX1 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.032e-25 Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K Q+ ELE EF+ HNYLTRLRRYE+AV L+L+ERQ+KVWFQNRRMK KR KG Sbjct: 169 SKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKG 231
BLAST of DNA-binding protein vs. UniProt/SwissProt
Match: sp|P32442|MEOX1_MOUSE (Homeobox protein MOX-1 OS=Mus musculus OX=10090 GN=Meox1 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.887e-25 Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K Q+ ELE EF+ HNYLTRLRRYE+AV L+L+ERQ+KVWFQNRRMK KR KG Sbjct: 168 SKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKG 230
BLAST of DNA-binding protein vs. TrEMBL
Match: Q24682 (DNA-binding protein (Fragment) OS=Girardia tigrina OX=6162 PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.011e-38 Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 3 Query: 732 NKINEEXXXXXXXXXXXXXXXXXXXXXXXXXFSKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKGQF 1022 NKINEEQIDIQSKKSSSINNNNDTDSNDDISFSKQRKERTAFSKGQILELEKEF+VHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKGQF Sbjct: 19 NKINEEQIDIQSKKSSSINNNNDTDSNDDISFSKQRKERTAFSKGQILELEKEFAVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKGQF 115
BLAST of DNA-binding protein vs. TrEMBL
Match: V4AZ98 (Homeobox domain-containing protein (Fragment) OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_59048 PE=4 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.743e-26 Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAFSK QI +LEKEFSVHNYLTRLRRYE+AVALNL ERQ+KVWFQNRRMK KR KG Sbjct: 2 SKPRKERTAFSKHQIRDLEKEFSVHNYLTRLRRYEIAVALNLTERQVKVWFQNRRMKWKRVKG 64
BLAST of DNA-binding protein vs. TrEMBL
Match: A0A0D4RFK8 (Mesoderm homeobox OS=Terebratalia transversa OX=34513 GN=Mox PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.513e-26 Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K QI ELEKEFSVHNYLTRLRRYE+AV+L+L ERQ+KVWFQNRRMK KR+KG Sbjct: 159 SKPRKERTAFTKHQIKELEKEFSVHNYLTRLRRYEIAVSLDLTERQVKVWFQNRRMKWKRTKG 221
BLAST of DNA-binding protein vs. TrEMBL
Match: A0A2T7PV38 (Homeobox domain-containing protein OS=Pomacea canaliculata OX=400727 GN=C0Q70_04257 PE=4 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 4.793e-26 Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 +K RKERTAF+K QI ELEKEF++HNYLTRLRRYE+AVALNL ERQ+KVWFQNRRMK KR KG Sbjct: 52 AKPRKERTAFTKHQIRELEKEFALHNYLTRLRRYEIAVALNLTERQVKVWFQNRRMKWKRVKG 114
BLAST of DNA-binding protein vs. TrEMBL
Match: A0A3S1AX36 (Homeobox domain-containing protein OS=Elysia chlorotica OX=188477 GN=EGW08_022697 PE=4 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 5.423e-26 Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 3 Query: 831 KQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 K RKERTAF+K QI ELEKEFS+HNYLTRLRRYELAVAL+L ERQ+KVWFQNRRMK KR KG Sbjct: 53 KPRKERTAFTKHQIQELEKEFSLHNYLTRLRRYELAVALDLTERQVKVWFQNRRMKWKRVKG 114
BLAST of DNA-binding protein vs. Ensembl Cavefish
Match: meox2a (mesenchyme homeobox 2 [Source:NCBI gene;Acc:103024054]) HSP 1 Score: 105.916 bits (263), Expect = 4.820e-26 Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K QI ELE EF+ HNYLTRLRRYE+AV L+L ERQ+KVWFQNRRMK KR KG Sbjct: 174 SKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKG 236
BLAST of DNA-binding protein vs. Ensembl Cavefish
Match: meox2b (homeobox protein MOX-2-like [Source:NCBI gene;Acc:103041353]) HSP 1 Score: 105.531 bits (262), Expect = 8.532e-26 Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 SK RKERTAF+K QI ELE EF+ HNYLTRLRRYE+AV L+L ERQ+KVWFQNRRMK KR KG Sbjct: 181 SKPRKERTAFTKEQIRELESEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKG 243
BLAST of DNA-binding protein vs. Ensembl Cavefish
Match: meox1 (mesenchyme homeobox 1 [Source:NCBI gene;Acc:103035291]) HSP 1 Score: 103.219 bits (256), Expect = 2.883e-25 Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 3 Query: 831 KQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 K RKERTAF+K Q+ ELE EF+ HNYLTRLRRYE+AV L+L ERQ+KVWFQNRRMK KR KG Sbjct: 169 KARKERTAFTKEQLRELEAEFTHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKG 230
BLAST of DNA-binding protein vs. Ensembl Cavefish
Match: ENSAMXT00000005320.2 (homeobox protein Hox-A9a-like [Source:NCBI gene;Acc:103022020]) HSP 1 Score: 84.7297 bits (208), Expect = 1.471e-18 Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 S RK+R ++K QILELEKEF + YLTR RRYE+A LNL ERQ+K+WFQNRRMK K+ Sbjct: 189 SSTRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 248
BLAST of DNA-binding protein vs. Ensembl Cavefish
Match: ENSAMXT00000045941.1 (pancreas/duodenum homeobox protein 1-like [Source:NCBI gene;Acc:103022002]) HSP 1 Score: 83.5741 bits (205), Expect = 1.506e-18 Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 3 Query: 831 KQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKGQ 1019 + ++ RTA+S+ Q+LELEKEF + Y++R RRYELA +LNL ER IK+WFQNRRMK K+ + + Sbjct: 134 EHKRSRTAYSRAQLLELEKEFLFNRYISRPRRYELATSLNLTERHIKIWFQNRRMKWKKEEAK 196
BLAST of DNA-binding protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011242.1 (pep scaffold:Pmarinus_7.0:GL476758:607601:607780:-1 gene:ENSPMAG00000010215.1 transcript:ENSPMAT00000011242.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 81.2629 bits (199), Expect = 4.789e-20 Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 3 Query: 837 RKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSK 1013 RK+R +SK Q LELEKEF + YLTR RRYE+A LNL ERQ+K+WFQNRRMK K+ K Sbjct: 2 RKKRCPYSKQQTLELEKEFLFNMYLTRDRRYEVARGLNLTERQVKIWFQNRRMKLKKMK 60
BLAST of DNA-binding protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011060.1 (pep scaffold:Pmarinus_7.0:GL482503:5543:5722:1 gene:ENSPMAG00000010033.1 transcript:ENSPMAT00000011060.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 81.2629 bits (199), Expect = 4.789e-20 Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 3 Query: 837 RKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSK 1013 RK+R +SK Q LELEKEF + YLTR RRYE+A LNL ERQ+K+WFQNRRMK K+ K Sbjct: 2 RKKRCPYSKQQTLELEKEFLFNMYLTRDRRYEVARGLNLTERQVKIWFQNRRMKLKKMK 60
BLAST of DNA-binding protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001141.1 (pep scaffold:Pmarinus_7.0:GL478075:36995:38394:-1 gene:ENSPMAG00000001023.1 transcript:ENSPMAT00000001141.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 79.337 bits (194), Expect = 7.693e-19 Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 K R+ RTAFS Q+LELE+ FS YL+R +R+++A AL L E Q+K+WFQNRRMK KR KG Sbjct: 1 GKCRRPRTAFSSQQLLELERHFSRQRYLSRPQRFQVASALMLTETQVKIWFQNRRMKWKRGKG 63
BLAST of DNA-binding protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000986.1 (pep scaffold:Pmarinus_7.0:GL477479:36520:39429:-1 gene:ENSPMAG00000000894.1 transcript:ENSPMAT00000000986.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 78.1814 bits (191), Expect = 2.776e-18 Identity = 34/60 (56.67%), Postives = 48/60 (80.00%), Query Frame = 3 Query: 834 QRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSK 1013 +++ RTAFS GQ+L LE+EFS YL+RLRR +A L L+E+Q+K+WFQNRR+K K+S+ Sbjct: 2 EKRARTAFSSGQLLALEREFSASRYLSRLRRIHVAARLRLSEKQVKIWFQNRRVKQKKSE 61
BLAST of DNA-binding protein vs. Ensembl Sea Lamprey
Match: hoxd4a (homeobox D4a [Source:NCBI gene;Acc:30329]) HSP 1 Score: 75.8702 bits (185), Expect = 8.466e-18 Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 3 Query: 837 RKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 ++ RTA+++ Q+LELEKEF + YLTR RR E+A +L L+ERQIK+WFQNRRMK K+ Sbjct: 3 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK 59
BLAST of DNA-binding protein vs. Ensembl Nematostella
Match: MOXB (MoxB; Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SR28]) HSP 1 Score: 101.293 bits (251), Expect = 1.073e-26 Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 3 Query: 825 FSKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKGQ 1019 K+RKERTAF+K QI ELE EF +NYLTRLRRYE+AV+L+L ERQ+KVWFQNRRMK KR KG+ Sbjct: 13 LGKKRKERTAFTKHQIQELENEFQRNNYLTRLRRYEIAVSLDLTERQVKVWFQNRRMKWKRVKGK 77
BLAST of DNA-binding protein vs. Ensembl Nematostella
Match: MOXC (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SR27]) HSP 1 Score: 99.3673 bits (246), Expect = 3.018e-26 Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 S++RKERT FSK Q+ ELE+EF +NYLTRLRRYE+AV+L+L ERQ+KVWFQNRRMK KR +G Sbjct: 12 SRKRKERTVFSKYQLTELEREFCRNNYLTRLRRYEIAVSLDLGERQVKVWFQNRRMKWKRGRG 74
BLAST of DNA-binding protein vs. Ensembl Nematostella
Match: MOX1 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SR25]) HSP 1 Score: 82.8037 bits (203), Expect = 6.065e-20 Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 3 Query: 867 QILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKGQ 1019 Q+ ELE EF+ +NYLTRLRRYE+AV+L+L ERQ+KVWFQNRRMK KR KG+ Sbjct: 3 QLRELENEFTRNNYLTRLRRYEIAVSLDLTERQVKVWFQNRRMKWKRVKGE 53
BLAST of DNA-binding protein vs. Ensembl Nematostella
Match: EDO42243 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S290]) HSP 1 Score: 78.5666 bits (192), Expect = 1.047e-18 Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 + R+ RTAFS Q+L LE++F +H YLTR +RYELA +L L E Q+K+WFQNRRMK KR Sbjct: 5 GRHRRPRTAFSSHQLLALERQFQLHKYLTRPQRYELATSLMLTETQVKIWFQNRRMKWKR 64
BLAST of DNA-binding protein vs. Ensembl Nematostella
Match: EDO33847 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SR26]) HSP 1 Score: 77.411 bits (189), Expect = 2.855e-18 Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 3 Query: 867 QILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 Q+ ELE EF +NYLTRLRRYE+AV+L+L ERQ+KVWFQNRRMK KR KG Sbjct: 2 QLQELENEFIRNNYLTRLRRYEIAVSLDLTERQVKVWFQNRRMKWKRVKG 51
BLAST of DNA-binding protein vs. Ensembl Medaka
Match: meox2a (mesenchyme homeobox 2 [Source:NCBI gene;Acc:101169883]) HSP 1 Score: 105.531 bits (262), Expect = 1.016e-25 Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 K RKERTAF+K QI ELE EF+ HNYLTRLRRYE+AV L+L ERQ+KVWFQNRRMK KR KG Sbjct: 198 GKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKG 260
BLAST of DNA-binding protein vs. Ensembl Medaka
Match: meox1 (mesenchyme homeobox 1 [Source:NCBI gene;Acc:101173748]) HSP 1 Score: 102.834 bits (255), Expect = 4.397e-25 Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 3 Query: 831 KQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKG 1016 K RKERTAF+K Q+ ELE EF+ HNYLTRLRRYE+AV L+L ERQ+KVWFQNRRMK KR KG Sbjct: 180 KARKERTAFTKEQLRELEAEFTHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKG 241
BLAST of DNA-binding protein vs. Ensembl Medaka
Match: hoxa9 (homeobox A9 [Source:NCBI gene;Acc:100049208]) HSP 1 Score: 86.2705 bits (212), Expect = 4.635e-19 Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKGQF*YNKD 1037 S RK+R ++K QILELEKEF + YLTR RRYE+A LNL ERQ+K+WFQNRRMK K+ +NKD Sbjct: 194 SATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK------FNKD 257
BLAST of DNA-binding protein vs. Ensembl Medaka
Match: hoxb9a (homeobox B9 [Source:NCBI gene;Acc:100049206]) HSP 1 Score: 82.4185 bits (202), Expect = 1.553e-17 Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 3 Query: 837 RKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 RK+R ++K Q LELEKEF + YLTR RR+E+A ALNL ERQ+K+WFQNRRMK K+ Sbjct: 218 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARALNLTERQVKIWFQNRRMKMKK 274
BLAST of DNA-binding protein vs. Ensembl Medaka
Match: ENSORLT00000022856.2 (pep primary_assembly:ASM223467v1:21:28760997:28766425:-1 gene:ENSORLG00000018251.2 transcript:ENSORLT00000022856.2 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 78.5666 bits (192), Expect = 1.861e-17 Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 3 Query: 825 FSKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSK 1013 K R+ RTAF+ Q+LELE +F V+ YL+R +R+E+A +L L E Q+K+WFQNRRMK KRS+ Sbjct: 17 LGKCRRPRTAFTSQQLLELENQFKVNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSR 79
BLAST of DNA-binding protein vs. Planmine SMEST
Match: SMESG000062714.1 (SMESG000062714.1) HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0 Identity = 291/293 (99.32%), Postives = 291/293 (99.32%), Query Frame = 3 Query: 144 MNINNKSAGKFYSKLGAIPNQSYHHLPQSLYHDYLPGYSTQNKTYPYHHQNNYNPPLINLHPSHMYYQSPYPALSVDYPDFNSNVSSRDFIKSQNYSFNYYNSQHKPNSILTPTAMNLSINNIVIPSVCGKFGFDNSYNSPTTLPFNVHYSNSINFCNNTTIENSPSVSENATVPISGNISSSTDNKLPINQSQYPNKINEEXXXXXXXXXXXXXXXXXXXXXXXXXFSKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKGQF 1022 MNINNKSAGKFYSKLGAIPNQSYHHLPQSLYHDYLPGYSTQNKTYPYHHQNNYNP LINLHPSHMYYQSPYPALSVDYPDFNSNVSSRDFIKSQNYSFNYYNSQHKPNSILTPTAMNLSINNIVIPSVCGKFGFDNSYNSPTTLPFNVHYSNSINFCNNTTIENSPSVSENATVPIS NISSSTDNKLPINQSQYPNKINEEQIDIQSKKSSSINNNNDTDSNDDISFSKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKGQF Sbjct: 1 MNINNKSAGKFYSKLGAIPNQSYHHLPQSLYHDYLPGYSTQNKTYPYHHQNNYNPSLINLHPSHMYYQSPYPALSVDYPDFNSNVSSRDFIKSQNYSFNYYNSQHKPNSILTPTAMNLSINNIVIPSVCGKFGFDNSYNSPTTLPFNVHYSNSINFCNNTTIENSPSVSENATVPISRNISSSTDNKLPINQSQYPNKINEEQIDIQSKKSSSINNNNDTDSNDDISFSKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKGQF 293
BLAST of DNA-binding protein vs. Planmine SMEST
Match: SMESG000071019.1 (SMESG000071019.1) HSP 1 Score: 83.5741 bits (205), Expect = 9.306e-18 Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 3 Query: 825 FSKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 S ++ RTA+++ QILELEKEF + YLTR RR E+A +L L+ERQ+K+WFQNRRMK K+ Sbjct: 222 LSDSKRNRTAYTRQQILELEKEFHFNKYLTRKRRIEIAQSLQLSERQVKIWFQNRRMKWKK 282
BLAST of DNA-binding protein vs. Planmine SMEST
Match: SMESG000043155.1 (SMESG000043155.1) HSP 1 Score: 79.7221 bits (195), Expect = 1.848e-16 Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 3 Query: 831 KQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKRSKGQF 1022 ++R+ R +S+ Q LELEKEF ++YLTR RR E+A L L+ERQIK+WFQNRRMK K+ + Q Sbjct: 250 QKRRGRQTYSRHQTLELEKEFQFNHYLTRRRRIEIAHNLCLSERQIKIWFQNRRMKLKKERQQI 313
BLAST of DNA-binding protein vs. Planmine SMEST
Match: SMESG000044469.1 (SMESG000044469.1) HSP 1 Score: 75.485 bits (184), Expect = 3.631e-16 Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 3 Query: 837 RKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 ++ R A+S+ Q LELEKEF + YLTR RR E+A ++ L+ERQIK+WFQNRRMK K+ Sbjct: 106 KRSRQAYSRQQTLELEKEFYYNQYLTRRRRIEIANSVCLSERQIKIWFQNRRMKYKK 162
BLAST of DNA-binding protein vs. Planmine SMEST
Match: SMESG000079807.1 (SMESG000079807.1) HSP 1 Score: 78.1814 bits (191), Expect = 4.944e-16 Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 3 Query: 828 SKQRKERTAFSKGQILELEKEFSVHNYLTRLRRYELAVALNLNERQIKVWFQNRRMKCKR 1007 S ++ R +++ Q LELEKEF + YLTR RR E+A AL+L ERQIK+WFQNRRMK K+ Sbjct: 211 SDHKRSRQTYTRYQTLELEKEFHFNKYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 270 The following BLAST results are available for this feature:
BLAST of DNA-binding protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of DNA-binding protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of DNA-binding protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of DNA-binding protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of DNA-binding protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of DNA-binding protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of DNA-binding protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of DNA-binding protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of DNA-binding protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of DNA-binding protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of DNA-binding protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of DNA-binding protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of DNA-binding protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of DNA-binding protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30002377 ID=SMED30002377|Name=DNA-binding protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1037bpback to top protein sequence of SMED30002377-orf-1 >SMED30002377-orf-1 ID=SMED30002377-orf-1|Name=SMED30002377-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=294bp MNINNKSAGKFYSKLGAIPNQSYHHLPQSLYHDYLPGYSTQNKTYPYHHQback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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