40S ribosomal protein S17

Overview
Name40S ribosomal protein S17
Smed IDSMED30002369
Length (bp)498
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 40S ribosomal protein S17 (SMED30002369) t-SNE clustered cells

Violin plots show distribution of expression levels for 40S ribosomal protein S17 (SMED30002369) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 40S ribosomal protein S17 (SMED30002369) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 40S ribosomal protein S17 (SMED30002369) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30002369

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 29

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30002369h1SMcG0022626 Contig1157GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
Smed sexual biotypeSMED30002369h1SMcG0022626 Contig54554newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30002369h1SMcG0022626 Contig54554uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
protonephridiaSMED30002369h1SMcG0022626 dd_Smed_v4_407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30002369h1SMcG0022626 dd_Smed_v4_407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30002369h1SMcG0022626 dd_Smed_v4_407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30002369h1SMcG0022626 dd_Smed_v4_407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30002369h1SMcG0022626 dd_Smed_v4_407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30002369h1SMcG0022626 dd_Smed_v4_407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30002369h1SMcG0022626 dd_Smed_v4_407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30002369h1SMcG0022626 dd_Smed_v4_407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30002369h1SMcG0022626 dd_Smed_v4_195_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30002369h1SMcG0022626 dd_Smed_v4_195_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30002369h1SMcG0022626 dd_Smed_v4_195_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30002369h1SMcG0022626 dd_Smed_v4_195_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30002369h1SMcG0022626 dd_Smed_v4_195_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30002369h1SMcG0022626 dd_Smed_v4_195_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30002369h1SMcG0022626 dd_Smed_v4_195_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30002369h1SMcG0022626 dd_Smed_v4_195_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30002369h1SMcG0022626 dd_Smed_v4_195_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30002369h1SMcG0022626 dd_Smed_v4_195_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30002369h1SMcG0022626 dd_Smed_v4_195_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30002369h1SMcG0022626 dd_Smed_v4_195_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30002369h1SMcG0022626 dd_Smed_v6_195_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30002369h1SMcG0022626 dd_Smed_v6_407_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30002369h1SMcG0022626 dd_Smed_v6_407_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
oocyteSMED30002369h1SMcG0022626 Contig1157GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30002369h1SMcG0022626 Contig1157GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
epidermisSMED30002369h1SMcG0022626 dd_Smed_v4_407_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Human
Match: RPS17 (ribosomal protein S17 [Source:HGNC Symbol;Acc:HGNC:10397])

HSP 1 Score: 172.555 bits (436), Expect = 1.770e-55
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTAST 458
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK  +   + N + VT  T
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDPDTKEMLKLLDFGSLSN-LQVTQPT 123
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Human
Match: RPS17 (ribosomal protein S17 [Source:HGNC Symbol;Acc:HGNC:10397])

HSP 1 Score: 172.555 bits (436), Expect = 1.770e-55
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTAST 458
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK  +   + N + VT  T
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDPDTKEMLKLLDFGSLSN-LQVTQPT 123
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Human
Match: RPS17 (ribosomal protein S17 [Source:HGNC Symbol;Acc:HGNC:10397])

HSP 1 Score: 171.785 bits (434), Expect = 2.957e-55
Identity = 85/108 (78.70%), Postives = 95/108 (87.96%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLK 407
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDPDTKEMLK 107
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Human
Match: RPS17 (ribosomal protein S17 [Source:HGNC Symbol;Acc:HGNC:10397])

HSP 1 Score: 171.785 bits (434), Expect = 2.957e-55
Identity = 85/108 (78.70%), Postives = 95/108 (87.96%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLK 407
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDPDTKEMLK 107
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Human
Match: RPS17 (ribosomal protein S17 [Source:HGNC Symbol;Acc:HGNC:10397])

HSP 1 Score: 172.17 bits (435), Expect = 1.477e-54
Identity = 85/108 (78.70%), Postives = 95/108 (87.96%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLK 407
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDPDTKEMLK 107
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Celegans
Match: rps-17 (40S ribosomal protein S17 [Source:UniProtKB/Swiss-Prot;Acc:O01692])

HSP 1 Score: 150.214 bits (378), Expect = 3.783e-47
Identity = 73/116 (62.93%), Postives = 90/116 (77.59%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGI--LDVDITTQEMLKAAESNL 425
            M RVRTKTVKKA+R +IE YY ++  DFH NK+V DE+A+I S  LRNK+AG+ THLM+RI+ GPVRGISIKLQEEERERRDNY+PE+S +    +  + VD  T +MLKAA  NL
Sbjct:    1 MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFNL 116
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Celegans
Match: rps-17 (40S ribosomal protein S17 [Source:UniProtKB/Swiss-Prot;Acc:O01692])

HSP 1 Score: 150.214 bits (378), Expect = 3.783e-47
Identity = 73/116 (62.93%), Postives = 90/116 (77.59%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGI--LDVDITTQEMLKAAESNL 425
            M RVRTKTVKKA+R +IE YY ++  DFH NK+V DE+A+I S  LRNK+AG+ THLM+RI+ GPVRGISIKLQEEERERRDNY+PE+S +    +  + VD  T +MLKAA  NL
Sbjct:    1 MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFNL 116
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Fly
Match: RpS17 (gene:FBgn0005533 transcript:FBtr0076479)

HSP 1 Score: 149.443 bits (376), Expect = 8.008e-47
Identity = 74/108 (68.52%), Postives = 89/108 (82.41%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLK 407
            MGRVRTKTVKKAA+ IIE YY +L  DFHTNK++ +E+A+IP+  LRNK+AG+ THLM R++   VRGISIKLQEEERERRDNYVP VSAL  D I++VD  T+EMLK
Sbjct:    1 MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQD-IIEVDADTKEMLK 107
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Zebrafish
Match: zgc:114188 (zgc:114188 [Source:ZFIN;Acc:ZDB-GENE-050320-15])

HSP 1 Score: 172.555 bits (436), Expect = 9.673e-56
Identity = 86/118 (72.88%), Postives = 99/118 (83.90%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNV 437
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK  +   + N+
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDTDTKEMLKLLDFGSLSNL 117
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Zebrafish
Match: rps17 (ribosomal protein S17 [Source:ZFIN;Acc:ZDB-GENE-040426-1852])

HSP 1 Score: 166.777 bits (421), Expect = 2.079e-53
Identity = 82/109 (75.23%), Postives = 94/109 (86.24%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKA 410
            MGRVRTKTVKKAAR +IE YY +LG DFH NK+V +EIA+IPS  LRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK+
Sbjct:    1 MGRVRTKTVKKAARVVIEKYYTRLGNDFHINKRVCEEIAIIPSKPLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDPDTKEMLKS 108
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Xenopus
Match: tsen34 (tRNA splicing endonuclease subunit 34 [Source:Xenbase;Acc:XB-GENE-5932624])

HSP 1 Score: 172.555 bits (436), Expect = 1.733e-55
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTAST 458
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK  +   + N + VT  T
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDPDTKEMLKLLDFGSLSN-LQVTQPT 123
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Xenopus
Match: tsen34 (tRNA splicing endonuclease subunit 34 [Source:Xenbase;Acc:XB-GENE-5932624])

HSP 1 Score: 162.155 bits (409), Expect = 1.737e-51
Identity = 84/120 (70.00%), Postives = 97/120 (80.83%), Query Frame = 3 
Query:   99 TKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTAST 458
            TKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK  +   + N + VT  T
Sbjct:    2 TKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDPDTKEMLKLLDFGSLSN-LQVTQPT 119
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Mouse
Match: Rps17 (ribosomal protein S17 [Source:MGI Symbol;Acc:MGI:1309526])

HSP 1 Score: 172.555 bits (436), Expect = 1.312e-55
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTAST 458
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK  +   + N + VT  T
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDPDTKEMLKLLDFGSLSN-LQVTQPT 123
[Close]
BLAST of 40S ribosomal protein S17 vs. UniProt/SwissProt
Match: sp|P08708|RS17_HUMAN (40S ribosomal protein S17 OS=Homo sapiens OX=9606 GN=RPS17 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 8.502e-55
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTAST 458
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK  +   + N + VT  T
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDPDTKEMLKLLDFGSLSN-LQVTQPT 123
[Close]
BLAST of 40S ribosomal protein S17 vs. UniProt/SwissProt
Match: sp|Q6QAP7|RS17_PIG (40S ribosomal protein S17 OS=Sus scrofa OX=9823 GN=RPS17 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 9.178e-55
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTAST 458
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK  +   + N + VT  T
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDPDTKEMLKLLDFGSLSN-LQVTQPT 123
[Close]
BLAST of 40S ribosomal protein S17 vs. UniProt/SwissProt
Match: sp|P63276|RS17_MOUSE (40S ribosomal protein S17 OS=Mus musculus OX=10090 GN=Rps17 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 9.178e-55
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTAST 458
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK  +   + N + VT  T
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDPDTKEMLKLLDFGSLSN-LQVTQPT 123
[Close]
BLAST of 40S ribosomal protein S17 vs. UniProt/SwissProt
Match: sp|P63275|RS17_FELCA (40S ribosomal protein S17 OS=Felis catus OX=9685 GN=RPS17 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 9.178e-55
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTAST 458
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK  +   + N + VT  T
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDPDTKEMLKLLDFGSLSN-LQVTQPT 123
[Close]
BLAST of 40S ribosomal protein S17 vs. UniProt/SwissProt
Match: sp|P63274|RS17_CRIGR (40S ribosomal protein S17 OS=Cricetulus griseus OX=10029 GN=RPS17 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 9.178e-55
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTAST 458
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK  +   + N + VT  T
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDPDTKEMLKLLDFGSLSN-LQVTQPT 123
[Close]
BLAST of 40S ribosomal protein S17 vs. TrEMBL
Match: A8E6B9 (Putative 40S ribosomal protein S17 isoform 1 OS=Spadella cephaloptera OX=52888 GN=rps17.1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.454e-53
Identity = 82/128 (64.06%), Postives = 104/128 (81.25%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTASTKRN 467
            MGRVRTKTVKKAAR I+E YY +LG DFHTNK++ +E+A+IPS +LRN++AGF THLMKRIQ GPVRGISIKLQEEERERRDNYVPE+S +    +++VD  T+EMLK+ +   I N+  VT +++ N
Sbjct:    1 MGRVRTKTVKKAARVIVEKYYTRLGSDFHTNKRIAEEVAIIPSKRLRNQIAGFMTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEISYIDAQDVIEVDPDTKEMLKSLDMAGISNLQVVTQTSQAN 128
[Close]
BLAST of 40S ribosomal protein S17 vs. TrEMBL
Match: A0A5B7EAH2 (40S ribosomal protein S17 OS=Portunus trituberculatus OX=210409 GN=RPS17 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.446e-53
Identity = 85/108 (78.70%), Postives = 94/108 (87.04%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLK 407
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK++ +EIA+IPS  LRNK+AGF THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL   GI++VD  T+EMLK
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGSDFHTNKRICEEIAIIPSKPLRNKIAGFVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALE-QGIIEVDADTKEMLK 107
[Close]
BLAST of 40S ribosomal protein S17 vs. TrEMBL
Match: A0A0P4WHH0 (Uncharacterized protein OS=Scylla olivacea OX=85551 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.446e-53
Identity = 85/108 (78.70%), Postives = 94/108 (87.04%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLK 407
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK++ +EIA+IPS  LRNK+AGF THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL   GI++VD  T+EMLK
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGSDFHTNKRICEEIAIIPSKPLRNKIAGFVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALE-QGIIEVDADTKEMLK 107
[Close]
BLAST of 40S ribosomal protein S17 vs. TrEMBL
Match: A0A3Q3GJ52 (Uncharacterized protein OS=Kryptolebias marmoratus OX=37003 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.176e-53
Identity = 87/124 (70.16%), Postives = 103/124 (83.06%), Query Frame = 3 
Query:   87 GRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTAST 458
            GRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + +++VD  T+EMLK   +++  NV D+T + 
Sbjct:    4 GRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-LIEVDPDTKEMLKLLTNSVPENVSDLTQAC 126
[Close]
BLAST of 40S ribosomal protein S17 vs. TrEMBL
Match: A0A0L8GMY6 (Uncharacterized protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22031151mg PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.303e-53
Identity = 84/109 (77.06%), Postives = 94/109 (86.24%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKA 410
            MG VRTKTVKKAAR IIE YY ++  DFHTNKK+ DEIA+IPS  LRNK+AGF THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSA+  +GI++VD  T+EMLKA
Sbjct:    1 MGAVRTKTVKKAARVIIEKYYTRMTLDFHTNKKICDEIAIIPSKTLRNKIAGFVTHLMKRIQKGPVRGISIKLQEEERERRDNYVPEVSAIEQNGIIEVDPDTKEMLKA 109
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Cavefish
Match: RPS17 (40S ribosomal protein S17 [Source:NCBI gene;Acc:103042467])

HSP 1 Score: 171.785 bits (434), Expect = 1.688e-55
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTAST 458
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK  +   + N + VT  T
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDPDTKEMLKLLDFGNLSN-LQVTQPT 123
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Cavefish
Match: RPS17 (40S ribosomal protein S17 [Source:NCBI gene;Acc:103042467])

HSP 1 Score: 171.785 bits (434), Expect = 1.688e-55
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTAST 458
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EMLK  +   + N + VT  T
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDPDTKEMLKLLDFGNLSN-LQVTQPT 123
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Cavefish
Match: rps17 (40S ribosomal protein S17-like [Source:NCBI gene;Acc:103024674])

HSP 1 Score: 167.162 bits (422), Expect = 9.880e-54
Identity = 86/125 (68.80%), Postives = 100/125 (80.00%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTAST 458
            MGRVRTKTVKKAAR IIE YY +LG DFH NK+V +EIA+IPS  LRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EML+  +   + N + VT  T
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHVNKRVCEEIAIIPSKPLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDTDTKEMLRMLDFGNLPN-LQVTQPT 123
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Cavefish
Match: rps17 (40S ribosomal protein S17-like [Source:NCBI gene;Acc:103024674])

HSP 1 Score: 155.221 bits (391), Expect = 4.833e-49
Identity = 80/119 (67.23%), Postives = 94/119 (78.99%), Query Frame = 3 
Query:  102 KTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTAST 458
            KTVKKAAR IIE YY +LG DFH NK+V +EIA+IPS  LRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + I++VD  T+EML+  +   + N + VT  T
Sbjct:    2 KTVKKAARVIIEKYYTRLGNDFHVNKRVCEEIAIIPSKPLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-IIEVDTDTKEMLRMLDFGNLPN-LQVTQPT 118
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005689.1 (pep scaffold:Pmarinus_7.0:GL483481:18947:23992:-1 gene:ENSPMAG00000005145.1 transcript:ENSPMAT00000005689.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 168.318 bits (425), Expect = 9.220e-55
Identity = 83/118 (70.34%), Postives = 98/118 (83.05%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNV 437
            MGRVRTKT+KKAAR IIE YY +LG DFHTNK+V +EIA+IPS  LRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + +++VD  T+EMLK  +   + N+
Sbjct:    1 MGRVRTKTIKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKPLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDHE-VIEVDPDTKEMLKVLDFGNLPNL 117
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Yeast
Match: RPS17B (Ribosomal protein 51 (rp51) of the small (40s) subunit; homologous to mammalian ribosomal protein S17, no bacterial homolog; RPS17B has a paralog, RPS17A, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000002855])

HSP 1 Score: 160.614 bits (405), Expect = 6.422e-52
Identity = 78/130 (60.00%), Postives = 102/130 (78.46%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAI---DGILDVDITTQEMLKAAESNLIVNVVDVTASTKR 464
            MGRVRTKTVK+A++++IE YY KL  DF TNK++ DEIA I S +LRNK+AG+ THLMKRIQ GPVRGIS KLQEEERER+D YVPEVSAL +   +G+L+VD  T +++K+    L ++V++V+A   R
Sbjct:    1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLKLPLSVINVSAQRDR 130
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Yeast
Match: RPS17A (Ribosomal protein 51 (rp51) of the small (40s) subunit; homologous to mammalian ribosomal protein S17, no bacterial homolog; RPS17A has a paralog, RPS17B, that arose from the whole genome duplication [Source:SGD;Acc:S000004486])

HSP 1 Score: 160.614 bits (405), Expect = 6.422e-52
Identity = 78/130 (60.00%), Postives = 102/130 (78.46%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAI---DGILDVDITTQEMLKAAESNLIVNVVDVTASTKR 464
            MGRVRTKTVK+A++++IE YY KL  DF TNK++ DEIA I S +LRNK+AG+ THLMKRIQ GPVRGIS KLQEEERER+D YVPEVSAL +   +G+L+VD  T +++K+    L ++V++V+A   R
Sbjct:    1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLKLPLSVINVSAQRDR 130
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Nematostella
Match: EDO34295 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SPQ4])

HSP 1 Score: 167.162 bits (422), Expect = 3.981e-54
Identity = 85/118 (72.03%), Postives = 97/118 (82.20%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNV 437
            MGRVRTKTVKKAAR IIE YY +L  DFHTNK+V +EIA+IPS KLRNK+AGF THLMKRIQ G VRGISIKLQEEERERRDNYVPEVSAL  + +++VD  T+EMLK  +   I N+
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLTLDFHTNKRVCEEIAIIPSKKLRNKIAGFVTHLMKRIQKGAVRGISIKLQEEERERRDNYVPEVSALEQE-LIEVDPETKEMLKVLDFGGIPNL 117
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Medaka
Match: RPS17 (ribosomal protein S17 [Source:NCBI gene;Acc:101161724])

HSP 1 Score: 171.4 bits (433), Expect = 2.598e-55
Identity = 88/125 (70.40%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTAST 458
            MGRVRTKTVKKAAR IIE YY +LG DFHTNK+V +EIA+IPS KLRNK+AG+ THLMKRIQ GPVRGISIKLQEEERERRDNYVPEVSAL  + +++VD  T+EMLK  +   + N + VT  T
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQE-LIEVDPDTKEMLKLLDFGSLSN-LQVTQPT 123
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Medaka
Match: ENSORLT00000034379.1 (40S ribosomal protein S17-like [Source:NCBI gene;Acc:111947053])

HSP 1 Score: 164.081 bits (414), Expect = 1.798e-52
Identity = 80/108 (74.07%), Postives = 94/108 (87.04%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLK 407
            MGRVRTKTVKKAA+ IIE YY +LG DFHTNK+V +EI++IPS  LRNK+AG+ THLMKRIQ GPVRGISIKLQE+ERERRDNYVPEVSAL  + +++VD  T+EMLK
Sbjct:    1 MGRVRTKTVKKAAKVIIEKYYTRLGNDFHTNKRVCEEISIIPSKPLRNKIAGYVTHLMKRIQRGPVRGISIKLQEDERERRDNYVPEVSALDQE-VIEVDPDTKEMLK 107
[Close]
BLAST of 40S ribosomal protein S17 vs. Ensembl Medaka
Match: ENSORLT00000001873.2 (40S ribosomal protein S17-like [Source:NCBI gene;Acc:111947053])

HSP 1 Score: 150.214 bits (378), Expect = 4.744e-47
Identity = 74/104 (71.15%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:   96 RTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLK 407
            R  TVKKAA+ IIE YY +LG DFHTNK+V +EI++IPS  LRNK+AG+ THLMKRIQ GPVRGISIKLQE+ERERRDNYVPEVSAL  + +++VD  T+EMLK
Sbjct:    3 RGFTVKKAAKVIIEKYYTRLGNDFHTNKRVCEEISIIPSKPLRNKIAGYVTHLMKRIQRGPVRGISIKLQEDERERRDNYVPEVSALDQE-VIEVDPDTKEMLK 105
[Close]
BLAST of 40S ribosomal protein S17 vs. Planmine SMEST
Match: SMESG000037102.1 (SMESG000037102.1)

HSP 1 Score: 260.381 bits (664), Expect = 9.174e-91
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 3 
Query:   84 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTASTKRN 467
            MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTASTKRN
Sbjct:    1 MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKVAGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVDITTQEMLKAAESNLIVNVVDVTASTKRN 128
The following BLAST results are available for this feature:
BLAST of 40S ribosomal protein S17 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RPS171.770e-5571.20ribosomal protein S17 [Source:HGNC Symbol;Acc:HGNC... [more]
RPS171.770e-5571.20ribosomal protein S17 [Source:HGNC Symbol;Acc:HGNC... [more]
RPS172.957e-5578.70ribosomal protein S17 [Source:HGNC Symbol;Acc:HGNC... [more]
RPS172.957e-5578.70ribosomal protein S17 [Source:HGNC Symbol;Acc:HGNC... [more]
RPS171.477e-5478.70ribosomal protein S17 [Source:HGNC Symbol;Acc:HGNC... [more]
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BLAST of 40S ribosomal protein S17 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rps-173.783e-4762.9340S ribosomal protein S17 [Source:UniProtKB/Swiss... [more]
rps-173.783e-4762.9340S ribosomal protein S17 [Source:UniProtKB/Swiss... [more]
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BLAST of 40S ribosomal protein S17 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
RpS178.008e-4768.52gene:FBgn0005533 transcript:FBtr0076479[more]
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BLAST of 40S ribosomal protein S17 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
zgc:1141889.673e-5672.88zgc:114188 [Source:ZFIN;Acc:ZDB-GENE-050320-15][more]
rps172.079e-5375.23ribosomal protein S17 [Source:ZFIN;Acc:ZDB-GENE-04... [more]
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BLAST of 40S ribosomal protein S17 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
tsen341.733e-5571.20tRNA splicing endonuclease subunit 34 [Source:Xenb... [more]
tsen341.737e-5170.00tRNA splicing endonuclease subunit 34 [Source:Xenb... [more]
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BLAST of 40S ribosomal protein S17 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Rps171.312e-5571.20ribosomal protein S17 [Source:MGI Symbol;Acc:MGI:1... [more]
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BLAST of 40S ribosomal protein S17 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P08708|RS17_HUMAN8.502e-5571.2040S ribosomal protein S17 OS=Homo sapiens OX=9606 ... [more]
sp|Q6QAP7|RS17_PIG9.178e-5571.2040S ribosomal protein S17 OS=Sus scrofa OX=9823 GN... [more]
sp|P63276|RS17_MOUSE9.178e-5571.2040S ribosomal protein S17 OS=Mus musculus OX=10090... [more]
sp|P63275|RS17_FELCA9.178e-5571.2040S ribosomal protein S17 OS=Felis catus OX=9685 G... [more]
sp|P63274|RS17_CRIGR9.178e-5571.2040S ribosomal protein S17 OS=Cricetulus griseus OX... [more]
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BLAST of 40S ribosomal protein S17 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A8E6B95.454e-5364.06Putative 40S ribosomal protein S17 isoform 1 OS=Sp... [more]
A0A5B7EAH26.446e-5378.7040S ribosomal protein S17 OS=Portunus tritubercula... [more]
A0A0P4WHH06.446e-5378.70Uncharacterized protein OS=Scylla olivacea OX=8555... [more]
A0A3Q3GJ528.176e-5370.16Uncharacterized protein OS=Kryptolebias marmoratus... [more]
A0A0L8GMY69.303e-5377.06Uncharacterized protein OS=Octopus bimaculoides OX... [more]
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BLAST of 40S ribosomal protein S17 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
RPS171.688e-5571.2040S ribosomal protein S17 [Source:NCBI gene;Acc:10... [more]
RPS171.688e-5571.2040S ribosomal protein S17 [Source:NCBI gene;Acc:10... [more]
rps179.880e-5468.8040S ribosomal protein S17-like [Source:NCBI gene;A... [more]
rps174.833e-4967.2340S ribosomal protein S17-like [Source:NCBI gene;A... [more]
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BLAST of 40S ribosomal protein S17 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSPMAT00000005689.19.220e-5570.34pep scaffold:Pmarinus_7.0:GL483481:18947:23992:-1 ... [more]
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BLAST of 40S ribosomal protein S17 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
RPS17B6.422e-5260.00Ribosomal protein 51 (rp51) of the small (40s) sub... [more]
RPS17A6.422e-5260.00Ribosomal protein 51 (rp51) of the small (40s) sub... [more]
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BLAST of 40S ribosomal protein S17 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO342953.981e-5472.03Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of 40S ribosomal protein S17 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
RPS172.598e-5570.40ribosomal protein S17 [Source:NCBI gene;Acc:101161... [more]
ENSORLT00000034379.11.798e-5274.0740S ribosomal protein S17-like [Source:NCBI gene;A... [more]
ENSORLT00000001873.24.744e-4771.1540S ribosomal protein S17-like [Source:NCBI gene;A... [more]
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BLAST of 40S ribosomal protein S17 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000037102.19.174e-91100.00SMESG000037102.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30002369 ID=SMED30002369|Name=40S ribosomal protein S17|organism=Schmidtea mediterranea sexual|type=transcript|length=498bp
AAAAAATTTGCATTAATAAATTGCAAAGTTAATTTGTTTAAATTTCTGAT
ATTATTAATATATAATTATTTTAAACTTTTATAATGGGAAGAGTTCGTAC
TAAAACTGTTAAGAAAGCAGCACGTTCAATTATTGAACTTTACTATGCAA
AATTAGGCCGTGACTTCCACACCAACAAAAAAGTTATGGATGAAATTGCA
CTCATTCCATCTCATAAATTACGAAACAAAGTTGCTGGATTTGCCACACA
TTTAATGAAAAGAATTCAAGCTGGCCCAGTTCGTGGAATTAGTATAAAAT
TACAAGAAGAAGAACGAGAAAGACGTGATAACTATGTCCCAGAAGTTTCA
GCTCTTGCAATTGATGGAATTCTTGATGTTGACATCACTACTCAAGAAAT
GTTGAAAGCAGCTGAAAGCAATTTGATAGTCAATGTTGTTGATGTTACTG
CGTCTACTAAACGCAACTAATTTCTGCTAAATAAATTTGGAAATGCTT
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protein sequence of SMED30002369-orf-1

>SMED30002369-orf-1 ID=SMED30002369-orf-1|Name=SMED30002369-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=129bp
MGRVRTKTVKKAARSIIELYYAKLGRDFHTNKKVMDEIALIPSHKLRNKV
AGFATHLMKRIQAGPVRGISIKLQEEERERRDNYVPEVSALAIDGILDVD
ITTQEMLKAAESNLIVNVVDVTASTKRN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000429neoblast
PLANA:0002032epidermal cell
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR036401RPS17e-like_sf
IPR001210Ribosomal_S17e
Vocabulary: cellular component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0022627cytosolic small ribosomal subunit
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: biological process
TermDefinition
GO:0006412translation
GO:0000028ribosomal small subunit assembly
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001210Ribosomal protein S17ePFAMPF00833Ribosomal_S17ecoord: 1..118
e-value: 1.6E-55
score: 186.2
IPR001210Ribosomal protein S17ePANTHERPTHR1073240S RIBOSOMAL PROTEIN S17coord: 1..121
IPR036401Ribosomal protein S17e-like superfamilyGENE3DG3DSA:1.10.60.20coord: 1..62
e-value: 1.2E-31
score: 110.1
IPR036401Ribosomal protein S17e-like superfamilySUPERFAMILYSSF116820Rps17e-likecoord: 1..62