SMED30002282
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppSub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30002282 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Alignments
SMED30002282 aligns in the following genomic locations:
Homology
BLAST of SMED30002282 vs. TrEMBL
Match: A0A1S3JYU6 (C5a anaphylatoxin chemotactic receptor 1 OS=Lingula unguis OX=7574 GN=LOC106177380 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.351e-26 Identity = 87/293 (29.69%), Postives = 158/293 (53.92%), Query Frame = -3 Query: 149 FIILSRKSISSGSLAVYFRVLAICDSLALITGLIPVFIYQISDFNMTTINDWSCRIQRFVNFFFGDVACWILILVSFERFIAVVYPLKLKSWSTKSKAILFTFLLFIPSCLKNFMAFVSLELKVITSKDEVGNQSSSEIKFCR-GKKEYFLYENVVRPMISLIGFYFLTALAIFVTNAIISCRMRERLKTMREDTIGIXXXXXXXXXXXXXXXXXLFVG--ILFLVFFTPSISIWTTMSLFTFYNVDINPN---LMGFLYALTDILSYLQYSTNFFIYVISGRRFRKELINLI 1009 +++ KS+ S ++Y R LAI D+ L+ G+ PV+I ++ ++T ++ W+C++ + + GD A W+++ V+ +RF++V +P K K W TK +A++ SC+ + FV+L +K G Q + C +KE+ +E V+R I I + F+ L+I + N++I+ + + + R++ G SSS + + + + + + F+V TPSI T+ L + Y V + P+ L L A+TD L Y +S NFF+Y ++G+ FR+E LI Sbjct: 52 LLVMRGKSLRPSSASIYLRYLAIADTSTLVLGVFPVWIRALTTVDVTALHPWTCKLHVYFLYSAGDCAVWVIVAVTVDRFLSVTFPFKAKLWCTKRRALI--------SCV--VITFVALLVKNSHLLWTRGFQYDATGAVCGVARKEFAFFETVIRSWIGFILYAFIPILSIIILNSLIAFGL-HKAQHQRQNLFGSSSSQAVTETANFRSSTYMLLALSLAFVVLVTPSI----TVLLLSPYWV-VTPHDRALEELLQAITDSLVYTNHSINFFLYCLTGKGFRREFFLLI 328
BLAST of SMED30002282 vs. TrEMBL
Match: A0A0K0PVM1 (Orphan G-protein coupled receptor 1 OS=Platynereis dumerilii OX=6359 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.132e-21 Identity = 79/291 (27.15%), Postives = 141/291 (48.45%), Query Frame = -3 Query: 143 IILSRKSISSGSLAVYFRVLAICDSLALITGLIPVFIYQISDFNMTTINDWSCRIQRFVNFFFGDVACWILILVSFERFIAVVYPLKLKSWSTKSKAILFTFLLFIPSCLKNFMAFVSLELKVITSKDEVGNQSSSEIKFCR-GKKEYFLYENVVRPMISLIGFYFLTALAIFVTNAIISCRM--RERLKTMREDTIGIXXXXXXXXXXXXXXXXXLFVGILFLVFFTPSISIWTTMSLFTFYNVDINPNLMGFLYALTDILSYLQYSTNFFIYVISGRRFRKELINLIHC 1006 I++SR + + A+Y VLAI D+ AL +G+IP ++ + ++ +CR ++ + + D A WIL+ + +RFIAV +P + W T KAI+ + L + + +KN + V ++ +++ + IK C + EY +E VRP + + + L I N I ++ R+K + + + M + V LFL+ TPS+ ++ S + + D A+T++L YL +S NFF+Y +SG+RFR+E + C Sbjct: 61 IVMSRNKMRGNTTAIYLPVLAIADAFALFSGIIPEWMEACNIIKFKELSPGTCRFEKIIFYTSADTAIWILVAFTCDRFIAVCFPFRKSRWCTSRKAIIISASLLVAAFIKN--------MHVFWTRGAQYDENGTFIKNCGYPRPEYKNFERNVRPWLVFVLVNLIPFLVILSCNLAIVYKLLAATRIKDISKPN----------SKYSQTTLMCVGVSFLFLLTTTPSVVMYIGRSEWDKSHTD----AYEVAKAVTNVLVYLNHSLNFFVYCMSGKRFRREFLMFCCC 329
BLAST of SMED30002282 vs. TrEMBL
Match: A0A0K0PUJ9 (Orphan G-protein coupled receptor 49 OS=Platynereis dumerilii OX=6359 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.077e-19 Identity = 76/289 (26.30%), Postives = 143/289 (49.48%), Query Frame = -3 Query: 143 FIILSRKSISSGSLAVYFRVLAICDSLALITGLIPVFIYQISDFNMTTINDWSCRIQRFVNFFFGDVACWILILVSFERFIAVVYPLKLKSWSTKSKAILFTFLLFIPSCLKNFMAFVSLELKVITSKDEVGNQSSSEIKFCRGKKEYFLYENVVRPMISLIGFYFLTALAIFVTNAIISCRMRERLKTMREDTIGIXXXXXXXXXXXXXXXXXLFVGILFLVFFTPSISIWTTMSLFTFYNVDINPNLMGFLYALTDILSYLQYSTNFFIYVISGRRFRKELINLIHC 1009 I++ R+ + +Y R++A+ D L LI G++P ++ ++ +C++++F+ + GDV+ WIL+ + +RFIAV +P ++ +A + F++ + + KN F + + E N S + C + + +E ++RP I L L I + N +I +R +++ R T G ++ K + M L FLVF TPSI + +++ D + ++ A+ + L+Y+ +S NFF+Y +SG RFRKEL+ + C Sbjct: 63 LIVMMRRKFQGTTTCIYLRLMALADLLVLIIGMVPEWLSANDIVIFKEVHPVTCKLEKFLQYTTGDVSIWILMCFTVDRFIAVCFPFSKTNFCKPGRARFYGFIVLLAAIFKNLCVFWT--RGPVYHSSEGDNSSLVLVSNCGRPQPFTYFEKLIRPWIVFALISVLPFLVIVICNVMI---IRALIES-RVVTSGNKIQSNMEKTYMQMTLMCLSASFAFLVFITPSIVLLIGKP---YWDNDSDSYIIA--KAVNNQLTYVNHSINFFLYCLSGARFRKELVRTLIC 340
BLAST of SMED30002282 vs. TrEMBL
Match: R7U5J6 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_198894 PE=4 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.486e-18 Identity = 71/292 (24.32%), Postives = 140/292 (47.95%), Query Frame = -3 Query: 161 FIILSRKSISSGSLAVYFRVLAICDSLALITGLIPVFIYQISDFNMTTINDWSCRIQRFVNFFFGDVACWILILVSFERFIAVVYPLKLKSWSTKSKAILFTFLLFIPSCLKNFMAFVSLELKVITSKDEVGNQSSSEIKFCRGKKEYFLYENVVRP-----MISLIGFYFLTALAIFVTNAIISCRMRE----RLKTMREDTIGIXXXXXXXXXXXXXXXXXLFVGILFLVFFTPSISIWTTMSLFTFYNVDINPNLMGFLYALTDILSYLQYSTNFFIYVISGRRFRKEL 1009 F+ L+R+ + +YFR L I DS AL+ GL+P++ ++ +++T + C+++ F+ F D + W++ + +R +AVV+PLK KS+ T+ A++ +++ + LKN ++ ++ E N S K + ++ YE +RP ++ I F F+TA I + + + + + R++++ + IS ++ V F+V +PSI I +T + + + ++ Y + NF +Y+ SGR FR+EL Sbjct: 39 FVTLARQILRHRVSTIYFRALCIADSGALLFGLLPIWPLYLAGYDVTAQHAVICKLRNFLFITFSDASIWLICAFTLDRLVAVVFPLKRKSYCTRRHALIAITVIWAVATLKNVPMLITWGIR------ETHNYSHHVSKCGVPEPDHAFYEEYIRPWLVFTTVTFIPFIFITACNIIIVHHVQRMGLSQATIARVRSITRQSSEISVASMSRMCLA--------VSFTFVVLVSPSIVILVGKPYWT--KTEQSEAKFHLARSFGNLCQYTNNAINFLLYLSSGREFRREL 314
BLAST of SMED30002282 vs. TrEMBL
Match: R7UUD3 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_169933 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.279e-17 Identity = 83/293 (28.33%), Postives = 145/293 (49.49%), Query Frame = -3 Query: 149 FIILSRKSISSGSLAVYFRVLAICDSLALITGLIPVFIYQISDFNMTTINDWSCRIQRFVNFFFGDVACWILILVSFERFIAVVYPLKLKSWSTKSKAILFTFLLFIPSCLKNFMAFVSLELKVITSKDEVGNQSSSEIKFCRGKKEYFLYENVVRPMISLIGFYFLTALAIFVTNAIISCRMRERLKTMREDTIGIXXXXXXXXXXXXXXXXXLFVGILFLVFFTPSI------SIWTTMSLFTFYNVDINPNLMGFLYALTDILSYLQYSTNFFIYVISGRRFRKELINLI 1009 +++++K + + +VY R++A D LITG+IP ++ Q I+ +C++++F + D A WIL++ + +RFIAV +PL+ K + S++ F + + KNF F + + IT V N + + R E+ +E VRP I+ L I V N I R +K +R + +S+S+ Q+ Q + + F FLV TPSI WT + + DI+ +++ L Y+ +S NFF+Y ++G+RFR L++L+ Sbjct: 63 LLVMAKKRMRGTTTSVYLRLMAFADLCVLITGMIPEWLEQADILVFKYIHPATCKLEKFTFYTSADTAIWILVIFTVDRFIAVCFPLEKKDYCLPSRSKYFATGALLLAVTKNFHVFWTRGAEYIT----VDNSTVLKSNCGRPTPEFKYFEFYVRPWIAFTTVNALPFCVILVCNIFI-IRALIAVKKLRSEQAIVSNSDRQLFQMSLMCLSASFS---FLVCITPSIILLIGRPHWTGSTAY-----DIS-------KGISNQLVYVNHSINFFLYCVTGKRFRVVLVHLL 335
BLAST of SMED30002282 vs. Planmine SMEST
Match: SMESG000011554.1 (SMESG000011554.1) HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0 Identity = 315/330 (95.45%), Postives = 320/330 (96.97%), Query Frame = -3 Query: 140 DGQFYFFTL*LKMLNDISNFINKYXXXXXXXXXXXXXXXSFIILSRKSISSGSLAVYFRVLAICDSLALITGLIPVFIYQISDFNMTTINDWSCRIQRFVNFFFGDVACWILILVSFERFIAVVYPLKLKSWSTKSKAILFTFLLFIPSCLKNFMAFVSLELKVITSKDEVGNQSSSEIKFCRGKKEYFLYENVVRPMISLIGFYFLTALAIFVTNAIISCRMRERLKTMREDTIGIXXXXXXXXXXXXXXXXXLFVGILFLVFFTPSISIWTTMSLFTFYNVDINPNLMGFLYALTDILSYLQYSTNFFIYVISGRRFRKELINLIHCR 1129 +G F + L+++ NFINKYCLSLLLIIGCLGNGLSFIILSRKSISSGSLAVYFRVLAICDSLALITGLIPVFIYQISDFNMTTINDWSCRIQRFVNFFFGDVACWILILVSFERFIAVVYPLKLKSWSTKSKAILFTFLLFIPSCLKNFMAFVSLELKVITSKDEVGNQSSSEIKFCRGKKEYFLYENVVRPMISLIGFYFLTALAIFVTNAIISCRMRERLKTMREDTIGISSSNSQVKQSKSLLKMSLFVGILFLVFFTPSISIWTTMSLFTFYNVDINPNLMGFLYALTDILSYLQYSTNFFIYVISGRRFRKELINLIHCR Sbjct: 7 NGILLIFKVHLEIIRLTDNFINKYCLSLLLIIGCLGNGLSFIILSRKSISSGSLAVYFRVLAICDSLALITGLIPVFIYQISDFNMTTINDWSCRIQRFVNFFFGDVACWILILVSFERFIAVVYPLKLKSWSTKSKAILFTFLLFIPSCLKNFMAFVSLELKVITSKDEVGNQSSSEIKFCRGKKEYFLYENVVRPMISLIGFYFLTALAIFVTNAIISCRMRERLKTMREDTIGISSSNSQVKQSKSLLKMSLFVGILFLVFFTPSISIWTTMSLFTFYNVDINPNLMGFLYALTDILSYLQYSTNFFIYVISGRRFRKELINLIHCR 336 HSP 2 Score: 50.447 bits (119), Expect = 2.614e-6 Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = -2 Query: 1269 MRLIINNGILLIFKVHLEIIRLTESVIN 1352 MRLIINNGILLIFKVHLEIIRLT++ IN Sbjct: 1 MRLIINNGILLIFKVHLEIIRLTDNFIN 28
BLAST of SMED30002282 vs. Planmine SMEST
Match: SMESG000011555.1 (SMESG000011555.1) HSP 1 Score: 317.39 bits (812), Expect = 2.250e-103 Identity = 182/323 (56.35%), Postives = 242/323 (74.92%), Query Frame = -3 Query: 140 MLNDISNFINKYXXXXXXXXXXXXXXXSFIILSRKSISSGSLAVYFRVLAICDSLALITGLIPVFIYQISDFNMTTINDWSCRIQRFVNFFFGDVACWILILVSFERFIAVVYPLKLKSWSTKSKAILFTFLLFIPSCLKNFMAFVSLELKV--ITSKDEVGNQSSSEIKFCRGKKEYFLYENVVRPMISLIGFYFLTALAIFVTNAIISCRMRERLKTMR---EDTIGIXXXXXXXXXXXXXXXXXLFVGILFLVFFTPSISIWTTMSLFTFYNVDINPNLMGFLYALTDILSYLQYSTNFFIYVISGRRFRKELINLIHCR 1093 M + IS INK+ L ++L +G +GN LSFI+ R SIS SL++YFRVLA DSL LITGL+P F+YQI F +TTI+DWSCRIQR++ F GDVACW LILVS ER IAVV+PLK + W TKS+A+ + LFIP+ +KNFM F++LELK I D N + +EI+ C K +YF YEN+VRP +SL +YF+TA IF+TN +IS M+ RLK+MR ++ + S SQ QSKSLLKMSLF+GIL+LVF TPS++IWTT+++FT+Y V+I+ ++ FL+++TDIL+YLQYSTNFF+YVISG+RFR E+ NL+ + Sbjct: 1 MFSQISGTINKFILPIILAVGLVGNILSFIVFCRNSISKSSLSIYFRVLATFDSLTLITGLVPGFLYQICSFKITTISDWSCRIQRYLVFSSGDVACWTLILVSLERMIAVVFPLKAREWCTKSRALTLSLFLFIPASIKNFMTFLTLELKTFFIVGAD---NNTLTEIRQCISKTKYFYYENLVRPFLSLTLYYFVTAAIIFITNGVISLAMKSRLKSMRYITQEAVKADSGKSQKTQSKSLLKMSLFIGILYLVFLTPSMTIWTTINMFTYYQVEISGEMIDFLFSVTDILAYLQYSTNFFVYVISGKRFRLEIKNLLRIK 320
BLAST of SMED30002282 vs. Planmine SMEST
Match: SMESG000079764.1 (SMESG000079764.1) HSP 1 Score: 135.961 bits (341), Expect = 5.022e-35 Identity = 95/290 (32.76%), Postives = 155/290 (53.45%), Query Frame = -3 Query: 158 FIILSRKSISSGSLAVYFRVLAICDSLALITGLIPVFIYQISDFNMTTINDWS--CRIQRFVNFFFGDVACWILILVSFERFIAVVYPLKLKSWSTKSKAILFTFLLFIPSCLKNFMAFVSLELKVITSKDEVGNQSSSEIKFCRGKKEYFLYENVVRPMISLIGFYFLTALAIFVTNAIISCRMRERLKTMR----EDTIGIXXXXXXXXXXXXXXXXXLFVGILFLVFFTPSISIWTTMSLFTFYNVDINPNLMGFLYALTDILSYLQYSTNFFIYVISGRRFRKELI 1009 F I RK+ + ++ +Y R+LA+ DS+ L+ +P IY+ +M I+ S C IQR + F GD++ W L ++ +R +AVVYP + W + + ++F S LKNF F +L +S C + + +YE+ VRP+ISLI +Y + + + V +I MR+ + +R + +S+ + SKSL KMS+ + ILF V TPSI+IWT MS Y DIN + + Y +T+IL + +S NF+++ +G RFR+E++ Sbjct: 30 FAIFLRKNFRTSTITIYIRILAVADSVLLLAAAVPN-IYRGFHGDMGEIDRTSVACVIQRLIMFIAGDISVWTLTAITIDRLVAVVYPHQNSFWKSNKNTLFVLIVIFALSLLKNFPVFFTL--------------ASINGTRCAARTSFEIYEDSVRPIISLILYYLIPTITMTVCTVMILKEMRKIVGKIRAMSNPNRNSVSADYMKNHYSKSLTKMSIAINILFFVLITPSITIWTLMS----YAKDINADAIALCYDITNILVFSHHSLNFYLFFFTGPRFRREVL 300
BLAST of SMED30002282 vs. Planmine SMEST
Match: SMESG000079764.1 (SMESG000079764.1) HSP 1 Score: 135.576 bits (340), Expect = 5.046e-35 Identity = 95/290 (32.76%), Postives = 155/290 (53.45%), Query Frame = -3 Query: 158 FIILSRKSISSGSLAVYFRVLAICDSLALITGLIPVFIYQISDFNMTTINDWS--CRIQRFVNFFFGDVACWILILVSFERFIAVVYPLKLKSWSTKSKAILFTFLLFIPSCLKNFMAFVSLELKVITSKDEVGNQSSSEIKFCRGKKEYFLYENVVRPMISLIGFYFLTALAIFVTNAIISCRMRERLKTMR----EDTIGIXXXXXXXXXXXXXXXXXLFVGILFLVFFTPSISIWTTMSLFTFYNVDINPNLMGFLYALTDILSYLQYSTNFFIYVISGRRFRKELI 1009 F I RK+ + ++ +Y R+LA+ DS+ L+ +P IY+ +M I+ S C IQR + F GD++ W L ++ +R +AVVYP + W + + ++F S LKNF F +L +S C + + +YE+ VRP+ISLI +Y + + + V +I MR+ + +R + +S+ + SKSL KMS+ + ILF V TPSI+IWT MS Y DIN + + Y +T+IL + +S NF+++ +G RFR+E++ Sbjct: 23 FAIFLRKNFRTSTITIYIRILAVADSVLLLAAAVPN-IYRGFHGDMGEIDRTSVACVIQRLIMFIAGDISVWTLTAITIDRLVAVVYPHQNSFWKSNKNTLFVLIVIFALSLLKNFPVFFTL--------------ASINGTRCAARTSFEIYEDSVRPIISLILYYLIPTITMTVCTVMILKEMRKIVGKIRAMSNPNRNSVSADYMKNHYSKSLTKMSIAINILFFVLITPSITIWTLMS----YAKDINADAIALCYDITNILVFSHHSLNFYLFFFTGPRFRREVL 293
BLAST of SMED30002282 vs. Planmine SMEST
Match: SMESG000079761.1 (SMESG000079761.1) HSP 1 Score: 134.035 bits (336), Expect = 2.805e-34 Identity = 84/294 (28.57%), Postives = 156/294 (53.06%), Query Frame = -3 Query: 152 FIILSRKSISSGSLAVYFRVLAICDSLALITGLIPVFIYQISDFNMTTINDWSCRIQRFVNFFFGDVACWILILVSFERFIAVVYPLKLKSWSTKSKAILFTFLLFIPSCLKNFMAFVSLELKVITSKDEVGNQSSSEIKFCRGKKEYFLYENVVRPMISLIGFYFLTALAIFVTNAIISCRMRERLKTM-------REDTIGIXXXXXXXXXXXXXXXXXLF-VGILFLVFFTPSISIWTTMSLFTFYNVDINPNLMGFLYALTDILSYLQYSTNFFIYVISGRRFRKELINL 1009 F I R + S S+ Y R+LA+ D++ + G++P + ++ +D C +QRF+ FF GD++ WILI ++ +R +AVV+P++ +W ++ +I+ ++F S +KNF F +L + V N + + +FC ++ + YE +RP ISL+ +Y + + + + +I +M K + R ++ I++ N L + ILF++ +PSI IWT +S ++ I + LY T+IL + +S NF+++ +SG RFRKE++ + Sbjct: 30 FYIFLRPNFKSSSITKYMRILAVTDTILIFVGIVPNVYEGFNRKSLLIRSDAGCILQRFIMFFIGDISVWILIAITIDRLVAVVFPIQNTTWKSQKNSIVILIVVFSLSLIKNFPIFFTLSV--------VTNTNGT--RFCDTRERFAFYERKIRPFISLMMYYLIPTIIMTICTVVIILKMNRVAKKLDVMTNPKRRISMEINNVNFIRPHYSKSLTQMSIAINILFVLLLSPSIFIWTIIS---YWPASIQSEKISILYDSTNILVFSHHSLNFYLFFLSGPRFRKEVLQI 310 The following BLAST results are available for this feature:
BLAST of SMED30002282 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30002282 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30002282 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30002282 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30002282 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30002282 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30002282 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30002282 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30002282 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30002282 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30002282 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30002282 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30002282 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30002282 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30002282 ID=SMED30002282|Name=SMED30002282|organism=Schmidtea mediterranea sexual|type=transcript|length=1956bpback to top protein sequence of SMED30002282-orf-1 >SMED30002282-orf-1 ID=SMED30002282-orf-1|Name=SMED30002282-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=319bp MLNDISNFINKYCLSLLLIIGCLGNGLSFIILSRKSISSGSLAVYFRVLAback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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