TNF receptor associated factor-2
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30002156 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 5
Homology
BLAST of TNF receptor associated factor-2 vs. Ensembl Zebrafish
Match: traf3 (TNF receptor-associated factor 3 [Source:ZFIN;Acc:ZDB-GENE-040801-257]) HSP 1 Score: 46.9802 bits (110), Expect = 4.478e-7 Identity = 66/293 (22.53%), Postives = 115/293 (39.25%), Query Frame = 1 Query: 145 VNCPRQNCEFNDELQM-IENHMRTCDKRSISCPFNAIGCGMNEIRNEEMKSHLNEEIYCHSKXXXXXXXXXXXXMESMKSE---------------------NTEMRNENKQFKQQIDNIERQFINQQQKMCEMEAXXXXXXXXXXXXXXXXXXXXXXNRASQDEMIELMNEIIQSKQQIKNIEKPIETSETKSERQIDAFKQNFEQQQNIKVIYRND*ICDSDSK*NGEMRL*NPV------DSNKFWKCRIYKFRNFDWQIDKLSQLKRRKMIYIKPFYCRIIGYKMCLTV 939 V CP +C F+ L+ + +H C K ++C F GC + N+EM+ H + H +++ L ++E +KSE EMR +N+Q +Q++ +++ + +K+ E+E + +E RA ++E+ L + + + +++ S + S + EQQ + R+D + EM L V + WK R YK R + + K L Y +PFY GYKMC V Sbjct: 204 VACP-NHCSFSSILRSELSSHQHDCPKAQVTCSFIRYGCSYKGL-NQEMREHESSFASEHLRMMAVRNTTLEAKVEDVKSELMERYKVLPSLSSRLAEVERQYEEMREKNRQLEQKLVSMQMLMSSHSEKLLEVEMELRELRPL---------------RAMREEVETLRGSVESMRSMVSSLDSSCVNSASGSHTL-----ASLEQQ-----LTRHDDLMSVHDVRLAEMDLKLQVLETASFNGTLIWKIRDYKRRKQEAVVSKTLSL------YSQPFYTGYFGYKMCARV 463 HSP 2 Score: 27.335 bits (59), Expect = 4.478e-7 Identity = 12/40 (30.00%), Postives = 21/40 (52.50%), Query Frame = 3 Query: 936 GVKFGLLYL-MCGESDDRLEWPFKYELNIYLINPADGNDY 1052 G L ++ M GE D L+WPFK ++ + L++ + Sbjct: 473 GTHLSLFFVVMRGEYDALLQWPFKQKVTLMLMDQGPARKH 512
BLAST of TNF receptor associated factor-2 vs. TrEMBL
Match: A0A0F7GWW3 (TNF receptor associated factor 4 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.015e-14 Identity = 46/136 (33.82%), Postives = 85/136 (62.50%), Query Frame = 1 Query: 97 DIAIDWPINIRISEIVVNCPRQNCEFNDELQMIENHMRTCDKRSISCPFNAIGCGMNEIRNEEMKSHLNEEIYCHSKXXXXXXXXXXXXMESMKSENTEMRNENKQFKQQIDNIE------RQFINQQQKMCEMEA 486 +I +D+P+N++I+++ V C ++C++ DEL+ +E+H RTC RS++CP++ IGC I +++ HL EI+ H+KLL++ + N NEME +K+ N + N+ + +I+ ++ R I Q+ C +A Sbjct: 15 NICVDYPMNMKIAKLQVKCKEKSCDYVDELRKMEDHSRTCKYRSVACPYSNIGCDKCNISQDKVTDHLQSEIFVHTKLLMDFVVNFNNEMEMLKANNNGLSPVNELLRNEINELKLDGDRRRVEIGDLQRKCANQA 150
BLAST of TNF receptor associated factor-2 vs. TrEMBL
Match: I1ZID8 (TNF receptor associated factor-2 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 5.201e-12 Identity = 41/157 (26.11%), Postives = 83/157 (52.87%), Query Frame = 1 Query: 1 CSDCIEHYLDGSDKFCPGTARYCQNRMINYANDIAIDWPINIRISEIVVNCPRQNCEFNDELQMIENHMRTCDKRSISCPFNAIGCGMNEIRNEEMKSHLNEEIYCHSKXXXXXXXXXXXXMESMKSENTEMRNENKQFKQQIDNIERQFINQQQKM 471 CS CI Y+ + +CPG C+ + ++I D+ +N +I+++ V CP + C+ EL IE H+R C +S +CPF +GC ++ +++ +HL + HSK + + + +M+++ + + + ++ I+ I+ F +Q + M Sbjct: 47 CSKCIMEYVSRGNLYCPGGTSECKEENLTICSNIHTDYRVNRKIAKMRVKCPEETCKVYCELVDIEEHLRLCTMKSQNCPFFVLGCNQPKMVIQDLTNHLQNGTFQHSK-------LIIDIISNMRNDFFGLTTKEVELREDINLIKNHFQSQNEIM 196
BLAST of TNF receptor associated factor-2 vs. TrEMBL
Match: T1E101 (TRAF-6 OS=Dendrocoelum lacteum OX=27895 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 9.156e-11 Identity = 35/109 (32.11%), Postives = 55/109 (50.46%), Query Frame = 1 Query: 1 CSDCIEHYLDGSDKFCPGTARYCQNRMINYANDIAIDWPINIRISEIVVNCPRQNCEFNDELQMIENHMRTCDKRSISCPFNAIGCGMNEIRNEEMKSHLNEEIYCHSK 327 C CI YL + +CPG C+ +N D+ + ++ RIS IVV CP C + EL ++ H+ C S+ CP IGC + +EM HL +++ H++ Sbjct: 51 CYTCIRIYLSQNHNYCPGDKTECKEDYLNLEGDVFRNIRLSTRISRIVVKCPNIRCNYTSELLRLKEHLDKCTPESVECPCVTIGCEEEPLLKDEMAKHLTDQVLRHTQ 159
BLAST of TNF receptor associated factor-2 vs. Planmine SMEST
Match: SMESG000000393.1 (SMESG000000393.1) HSP 1 Score: 373.244 bits (957), Expect = 4.001e-122 Identity = 254/418 (60.77%), Postives = 280/418 (66.99%), Query Frame = 1 Query: 1 CSDCIEHYLDGSDKFCPGTARYCQNRMINYANDIAIDWPINIRISEIVVNCPRQNCEFNDELQMIENHMRTCDKRSISCPFNAIGCGMNEIRNEEMKSHLNEEIYCHSKXXXXXXXXXXXXMESMKSENTEMRNENKQFKQQIDNIERQFINQQQKMCEMEAXXXXXXXXXXXXXXXXXXXXXXNRASQDEMIELMNEIIQSKQQIKNIEKPIETSETKSERQIDAFKQNFE---QQQNIKVIYRND*ICDSDSK*NGEMRL*NPVDSNKFWKCRIYKFRNFDWQIDKLSQLKRRKMIYIKPFYCRIIGYKMCLTV---*NLGCFI*CVANPMTDWNGHSNMN*TYI**TRQMEMI-MINNR*NTMTALMMPDWVGQL----------ERNIPIYCKYDFNDLSDIKNDKLLLQCRIK 1203 CSDCIEHYLDG DKFCPGTARYCQNRMINYANDIAI WPINIRISEIVVNCPRQNCEFNDELQMIENH RTC + ISCPFNAIGCGMNEIRNEEMKSHLNEEIYCHSKLLIELINNLRNEMESMKSEN E+RNENKQFKQQ I+RQ N QQKMCEMEA + EI +++ AV ENRA QD+MIEL EI QSKQQI+NIEKPIETSETKSER+IDAFKQN E QQNIK I + K E+R P+ + KF F DW IDKLSQL+R K IY +PFY GYKMCL V + G C D + Y + +++I N + PD +RN PIY Y LS +KNDKLLL+CRIK Sbjct: 46 CSDCIEHYLDGKDKFCPGTARYCQNRMINYANDIAIHWPINIRISEIVVNCPRQNCEFNDELQMIENHTRTCGNQPISCPFNAIGCGMNEIRNEEMKSHLNEEIYCHSKLLIELINNLRNEMESMKSENIELRNENKQFKQQ---IKRQLANHQQKMCEMEA---KERENRGEINKKMAAVNNENRALQDKMIELRREISQSKQQIENIEKPIETSETKSEREIDAFKQNCEQQQLQQNIK-------IQNEMEKCANEIR---PIQT-KFGNAEFKNFGILDWHIDKLSQLERDKSIYSEPFYSWPGGYKMCLAVAIRGDFGVIWVCFHLMRGDCDAGLEWPFKY---SVTLDVINPANGNFYRSISEKCPDSRAGAAAARWGRPASDRNDPIY-NY-ITKLSKVKNDKLLLKCRIK 441
BLAST of TNF receptor associated factor-2 vs. Planmine SMEST
Match: SMESG000000493.1 (SMESG000000493.1) HSP 1 Score: 354.369 bits (908), Expect = 1.013e-114 Identity = 254/432 (58.80%), Postives = 282/432 (65.28%), Query Frame = 1 Query: 1 CSDCIEHYLDGSDKFCPGTARYCQNRMINYANDIAIDWPINIRISEIVVNCPRQNCEFNDELQMIENHMRTCDKRSISCPFNAIGCGMNEIRNEEMKSHLNEEIYCHSKXXXXXXXXXXXXMESMKSENTEM-------RNENKQFKQQIDNIERQFINQQQKMCEMEAXXXXXXXXXXXXXXXXXXXXXXNRASQDEMIELMNEIIQSKQQIKNIEKPIETSETKSERQIDAFKQNFE---QQQNIKVIYRND*ICDSDSK*NGEMRL*NPVDSNKFWKCRIYKFRNFDWQIDKLSQLKRRKMIYIKPFYCRIIGYKMCLTV----------*NLGCFI*CVANPMTDWNGHSNMN*TYI**TRQMEMIMINNR*NTMTALMMPD----------WVGQLE-RNIPIYCKYDFNDLSDIKNDKLLLQCRIK 1203 CSDCI+H+LDG+DKFCPGT+RYCQNRMINYANDIAIDWP NIRISEIVVNCPRQNCEFNDELQMIENHMRTCDK+SI+CPFNAIGCGMNEIRNEEMKSHLNEEIYCHSKLLIELINNLRNEMESMKSENTEM RN NKQFKQQIDNIERQFINQQQKMCEMEAKEQENTGEIEE+ EE+ +K NRA QDEMIEL EI QSKQ QIDAFKQN E QQNIK+ + I + E+RL KF F DWQIDKLSQL+R K IY +PFY GYK+CL V +LG CV + + + + + + + N ++ PD W RN I F LSDIKNDKLLL+CRI+ Sbjct: 46 CSDCIQHHLDGNDKFCPGTSRYCQNRMINYANDIAIDWPCNIRISEIVVNCPRQNCEFNDELQMIENHMRTCDKQSINCPFNAIGCGMNEIRNEEMKSHLNEEIYCHSKLLIELINNLRNEMESMKSENTEMRNYNIELRNANKQFKQQIDNIERQFINQQQKMCEMEAKEQENTGEIEELNEEMVVIKNANRALQDEMIELRREISQSKQ------------------QIDAFKQNGEQQQLQQNIKIQNEMEKIAN-------EIRL----IPTKFGNAEFINFGILDWQIDKLSQLRRDKWIYSEPFYSGPGGYKICLAVFIEYWWDDIRDDLGAI--CVGFYLMCGDCDAGLEWPFKYSVKVDAINPANGNVYCSQSVKCPDCPAATAAAANWGRPASYRNYAICFNNHFTKLSDIKNDKLLLKCRIE 446 HSP 2 Score: 58.5362 bits (140), Expect = 1.089e-8 Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 3 Query: 918 VQDVLDGVKFGLLYLMCGESDDRLEWPFKYELNIYLINPADGNDYDKQSMKYYDC----SDDARLGRPA 1112 ++D L + G YLMCG+ D LEWPFKY + + INPA+GN Y QS+K DC + A GRPA Sbjct: 348 IRDDLGAICVGF-YLMCGDCDAGLEWPFKYSVKVDAINPANGNVYCSQSVKCPDCPAATAAAANWGRPA 415
BLAST of TNF receptor associated factor-2 vs. Planmine SMEST
Match: SMESG000000559.1 (SMESG000000559.1) HSP 1 Score: 353.984 bits (907), Expect = 1.091e-113 Identity = 263/482 (54.56%), Postives = 292/482 (60.58%), Query Frame = 1 Query: 1 CSDCIEHYLDGSDKFCPGTARYCQNRMINYANDIAIDWPINIRISEIVVNCPRQNCEFNDELQMIENHMRTCDKRSISCPFNAIGCGMNEIRNEEMKSHLNEEIYCHSKXXXXXXXXXXXXMESMKSENTEMRN--------------ENKQFKQQIDNIERQFINQQQKMCEMEAXXXXXXXXXXXXXXXXXXXXXXNRASQDEMIELMN-------EIIQSKQQIKNIEKPIETSE------------------------------------------TKSERQIDAFKQNFEQ---QQNIKVIYRND*ICDSDSK*NGEMRL*NPVDSNKFWKCRIYKFRNFDWQIDKLSQLKRRKMIYIKPFYCRIIGYKMCLT--V*NLGCFI*CVANPM-TDWNGHSNMN*TYI**TRQMEMIMINNR*NTMTA---LMMPD---------WVGQL-ERNIPIYCKYDFNDLSDIKNDKLLLQCRI 1200 CSDCI+HYLDG+DKFCPGT RYCQNRMINYANDIAIDWP NIRISEIVVNCPRQNCEFNDELQMIENH RTCDKRSISCPFNAIGCGMNEIRNEEMKSHLNEEIYCHSKLLIELINNLRNEMESMK ENTEMRN N+QFKQQIDNIERQFINQQQKMCEMEAKEQENT EIE++ EE+ +K NRA QDEMIEL N EI QSKQQ +NIE + + +K ++QIDAFKQ EQ QQNIK I + K E+RL KF F DWQIDKLSQL+R+K IY KPFY GYKMCL + + G I + M D + Y +++ IN + + + PD W +RN PI C Y LS IKNDKLLL+CRI Sbjct: 46 CSDCIQHYLDGNDKFCPGTTRYCQNRMINYANDIAIDWPFNIRISEIVVNCPRQNCEFNDELQMIENHTRTCDKRSISCPFNAIGCGMNEIRNEEMKSHLNEEIYCHSKLLIELINNLRNEMESMKRENTEMRNYNIELRNDIIELRNANEQFKQQIDNIERQFINQQQKMCEMEAKEQENTAEIEQLNEEMVVIKNANRALQDEMIELRNDNIQLKREISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGEINEEIAAVNNANRALQNEMIELRREISKFKQQIDAFKQISEQHQLQQNIK-------IQNEMEKCANEIRL----IQTKFGNAEFINFGILDWQIDKLSQLERKKSIYSKPFYSGPGGYKMCLAVIIRDFGGAILVYFHLMRGDCDAGLEWPFKY-----AVKVDAINPADGNVYSSQSVKCPDSPAAAAAAGWGRPARDRNDPI-CYY-ITKLSAIKNDKLLLKCRI 509 HSP 2 Score: 53.5286 bits (127), Expect = 5.162e-7 Identity = 30/65 (46.15%), Postives = 37/65 (56.92%), Query Frame = 3 Query: 936 GVKFGLLYLMCGESDDRLEWPFKYELNIYLINPADGNDYDKQSMKYYDCSDDARL---GRPAREK 1121 G +LM G+ D LEWPFKY + + INPADGN Y QS+K D A GRPAR++ Sbjct: 420 GAILVYFHLMRGDCDAGLEWPFKYAVKVDAINPADGNVYSSQSVKCPDSPAAAAAAGWGRPARDR 484
BLAST of TNF receptor associated factor-2 vs. Planmine SMEST
Match: SMESG000000421.1 (SMESG000000421.1) HSP 1 Score: 344.354 bits (882), Expect = 8.995e-113 Identity = 215/236 (91.10%), Postives = 219/236 (92.80%), Query Frame = 1 Query: 1 CSDCIEHYLDGSDKFCPGTARYCQNRMINYANDIAIDWPINIRISEIVVNCPRQNCEFNDELQMIENHMRTCDKRSISCPFNAIGCGMNEIRNEEMKSHLNEEIYCHSKXXXXXXXXXXXXMESMKSENTEM-------RNENKQFKQQIDNIERQFINQQQKMCEMEAXXXXXXXXXXXXXXXXXXXXXXNRASQDEMIELMNEIIQSKQQIKNIEKPIETSETKSERQIDAFKQ 687 CSDCIEHYLDG +KFCPGT RYCQNRMINYANDIAID PINIRISEIVVNCPRQNCEFNDELQMIENHMRTCDK+SISCPFNAIGC MNEIRNEEMKSHLN+EIYCHSK+LIELINNLRNEMESMKSENTEM RNENKQFKQQ IERQ N QQKMCEMEAKEQENTGEIEEIKEEIKAVKIENRASQDEMIELMNEIIQSKQQIKNIEKPIETSETKSERQIDAFKQ Sbjct: 46 CSDCIEHYLDGKNKFCPGTTRYCQNRMINYANDIAIDRPINIRISEIVVNCPRQNCEFNDELQMIENHMRTCDKQSISCPFNAIGCEMNEIRNEEMKSHLNQEIYCHSKMLIELINNLRNEMESMKSENTEMRNDNIELRNENKQFKQQ---IERQIANHQQKMCEMEAKEQENTGEIEEIKEEIKAVKIENRASQDEMIELMNEIIQSKQQIKNIEKPIETSETKSERQIDAFKQ 278
BLAST of TNF receptor associated factor-2 vs. Planmine SMEST
Match: SMESG000000294.1 (SMESG000000294.1) HSP 1 Score: 345.895 bits (886), Expect = 2.342e-111 Identity = 234/379 (61.74%), Postives = 251/379 (66.23%), Query Frame = 1 Query: 1 CSDCIEHYLDGSDKFCPGTARYCQNRMINYANDIAIDWPINIRISEIVVNCPRQNCEFNDELQMIENHMRTCDKRSISCPFNAIGCGMNEIRNEEMKSHLNEEIYCHSKXXXXXXXXXXXXMESMKSENTEM--------------RNENKQFKQQIDNIERQFINQQQKMCEMEAXXXXXXXXXXXXXXXXXXXXXXNRASQDEMIELMNE-------IIQSKQQIKNIEKPIETSETK------------------------------------------SERQIDAFKQNFE---QQQNIKVIYRND*ICDSDSK*NGEMRL*NPVDSNKFWKCRIYKFRNFDWQIDKLSQLKRRKMIYIKPFYCRIIGYKMCLTV 939 CSDCI+H+LDG+DKFCPGT+RYCQNRMINYANDI IDWP NIRISEIVVNCPRQNCEFNDELQMIENHMRTCDKRSISCPFNAIGCGMNEIRNEEMKSHLNEEIYCHSKLLIELINNLRNEMESMKSENTEM RN NKQFKQQIDNIERQFINQQQKMCEMEAKEQENT EIE + EE+ +K NRA QDEMIEL N+ I QSKQQ +NIE + + K S++QIDAFKQ E QQNIK I + K E+RL KF F DWQIDKLSQL+R K IY +PFY GYKMCL V Sbjct: 46 CSDCIQHHLDGNDKFCPGTSRYCQNRMINYANDIGIDWPFNIRISEIVVNCPRQNCEFNDELQMIENHMRTCDKRSISCPFNAIGCGMNEIRNEEMKSHLNEEIYCHSKLLIELINNLRNEMESMKSENTEMRNYNIELRNDIIELRNANKQFKQQIDNIERQFINQQQKMCEMEAKEQENTAEIELLNEEMVVIKNANRALQDEMIELRNDNIQLKRQISQSKQQNQNIELQLTNQQQKMCEMEAKEQENRGEINGEIAAVNNANRSLQNEMIELRKEISQSKQQIDAFKQISEQQQLQQNIK-------IQNEMEKCANEIRL----IQTKFGNAEFINFGILDWQIDKLSQLERGKSIYSEPFYSGPGGYKMCLKV 413 HSP 2 Score: 53.9138 bits (128), Expect = 2.778e-7 Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 2 Query: 743 IQIQNEMEKCAYEIQSIQTNFGNAEFISFGIL 838 I+IQNEMEKCA EI+ IQT FGNAEFI+FGIL Sbjct: 348 IKIQNEMEKCANEIRLIQTKFGNAEFINFGIL 379 The following BLAST results are available for this feature:
BLAST of TNF receptor associated factor-2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of TNF receptor associated factor-2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 3
BLAST of TNF receptor associated factor-2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of TNF receptor associated factor-2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30002156 ID=SMED30002156|Name=TNF receptor associated factor-2|organism=Schmidtea mediterranea sexual|type=transcript|length=2230bpback to top protein sequence of SMED30002156-orf-1 >SMED30002156-orf-1 ID=SMED30002156-orf-1|Name=SMED30002156-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=245bp CSDCIEHYLDGSDKFCPGTARYCQNRMINYANDIAIDWPINIRISEIVVNback to top protein sequence of SMED30002156-orf-2 >SMED30002156-orf-2 ID=SMED30002156-orf-2|Name=SMED30002156-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=109bp MILTIYQTLKTTNCCCSAESKIVKDFIKYFNKSFDLFSQFASTQQINLCKback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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