SMED30002123
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30002123 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Alignments
SMED30002123 aligns in the following genomic locations:
Homology
BLAST of SMED30002123 vs. Ensembl Human
Match: GTF2IRD2 (GTF2I repeat domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30775]) HSP 1 Score: 77.0258 bits (188), Expect = 3.865e-14 Identity = 47/153 (30.72%), Postives = 81/153 (52.94%), Query Frame = -2 Query: 322 YYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFH---------CIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 753 + ++VS+A+ G +M + G+ + L R+ F CIIH E LC QK ++ VM++V+K +N I + L + L E++SQY +LL + +++WLSR VL+RF L +I +F + + +L W++ L F+ Sbjct: 610 WSKLVSVASTGTPAMVDANNGL----VTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMD--HVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFL 756 HSP 2 Score: 21.557 bits (44), Expect = 3.865e-14 Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = -1 Query: 272 DITKKLNELNVKLKGN 319 D+T LN LN+ L+G+ Sbjct: 758 DMTMHLNALNISLQGH 773
BLAST of SMED30002123 vs. Ensembl Human
Match: GTF2IRD2 (GTF2I repeat domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30775]) HSP 1 Score: 76.6406 bits (187), Expect = 4.840e-14 Identity = 47/153 (30.72%), Postives = 81/153 (52.94%), Query Frame = -2 Query: 322 YYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFH---------CIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 753 + ++VS+A+ G +M + G+ + L R+ F CIIH E LC QK ++ VM++V+K +N I + L + L E++SQY +LL + +++WLSR VL+RF L +I +F + + +L W++ L F+ Sbjct: 772 WSKLVSVASTGTPAMVDANNGL----VTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMD--HVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFL 918 HSP 2 Score: 21.557 bits (44), Expect = 4.840e-14 Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = -1 Query: 272 DITKKLNELNVKLKGN 319 D+T LN LN+ L+G+ Sbjct: 920 DMTMHLNALNISLQGH 935
BLAST of SMED30002123 vs. Ensembl Human
Match: GTF2IRD2B (GTF2I repeat domain containing 2B [Source:HGNC Symbol;Acc:HGNC:33125]) HSP 1 Score: 76.6406 bits (187), Expect = 5.061e-14 Identity = 47/150 (31.33%), Postives = 79/150 (52.67%), Query Frame = -2 Query: 322 MVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFH---------CIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 744 +VS+A+ G +M + G+ + L R+ F CIIH E LC QK ++ VM++V+K +N I + L + L E++SQY +LL + +++WLSR VL+RF L +I +F + + +L W++ L F+ Sbjct: 613 LVSVASTGTPAMVDANNGL----VTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMD--HVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFL 756 HSP 2 Score: 21.557 bits (44), Expect = 5.061e-14 Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = -1 Query: 272 DITKKLNELNVKLKGN 319 D+T LN LN+ L+G+ Sbjct: 758 DMTMHLNALNISLQGH 773
BLAST of SMED30002123 vs. Ensembl Human
Match: GTF2IRD2B (GTF2I repeat domain containing 2B [Source:HGNC Symbol;Acc:HGNC:33125]) HSP 1 Score: 76.2554 bits (186), Expect = 6.336e-14 Identity = 47/150 (31.33%), Postives = 79/150 (52.67%), Query Frame = -2 Query: 322 MVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFH---------CIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 744 +VS+A+ G +M + G+ + L R+ F CIIH E LC QK ++ VM++V+K +N I + L + L E++SQY +LL + +++WLSR VL+RF L +I +F + + +L W++ L F+ Sbjct: 780 LVSVASTGTPAMVDANNGL----VTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMD--HVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFL 923 HSP 2 Score: 21.557 bits (44), Expect = 6.336e-14 Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = -1 Query: 272 DITKKLNELNVKLKGN 319 D+T LN LN+ L+G+ Sbjct: 925 DMTMHLNALNISLQGH 940
BLAST of SMED30002123 vs. Ensembl Human
Match: FAM200B (family with sequence similarity 200 member B [Source:HGNC Symbol;Acc:HGNC:27740]) HSP 1 Score: 73.9442 bits (180), Expect = 3.944e-13 Identity = 43/140 (30.71%), Postives = 77/140 (55.00%), Query Frame = -2 Query: 322 SIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNE-KTIVRHELKEDKWLKKLNFI 738 I +DG +MTG H + +L+ N+ HC IH+E L ++ P ++EV+ +K++N I ++L L+ F EI + + +LL H K++WLS+ +L R ++I F E K+ + ++D W+ KL ++ Sbjct: 293 GITSDGTATMTGKHSRVIKKLLEVTNNGAVWNHCFIHREGLASREIPQNLMEVLKNAVKVVNFIKGSSLNSRLLETFCSEIGTNHTHLLYHTKIRWLSQGKILSRVYELRNEIHFFLIEKKSHLASIFEDDTWVTKLAYL 432
BLAST of SMED30002123 vs. Ensembl Zebrafish
Match: CR392001.3 (pep chromosome:GRCz11:8:38963323:38965260:-1 gene:ENSDARG00000117159.1 transcript:ENSDART00000181495.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR392001.3) HSP 1 Score: 160.614 bits (405), Expect = 9.339e-42 Identity = 109/299 (36.45%), Postives = 160/299 (53.51%), Query Frame = -2 Query: 322 NDANLTSLTISVQITKRGK*FIDCEYFKDCFISRAEELFSNFKNKKS--------NICHYMLK*YKIEL*HN-TT*HV*LIRXXXXXXXAMDESCNIEDTYTLLFSLG-------ICRLKAQKKN*E--SAALKANSWRR*HKRCAKMRGRL*NPYYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 1164 N S + +I KRGK F D +Y K+ FI+ +E LFS+FKNK + +K I++ N T + I A A S+A DESC+ + S G + LK Q + + A LK C G N ++S+ATDGA SM G +G ++ + L+ + FHCI+HQE LC Q FP E + VMNLVI+++N I+ L Q + L E++S+Y +LLLHNKV+WLS+ VL RF +CL +KTF K ++ +L++ +WL+KL+F+ Sbjct: 99 NSTTAASFVATREIIKRGKPFTDGDYMKESFINISEHLFSDFKNKTEIIQKIKDMPLSAKTVKERAIKMAGNITEQQIKDINSAPAYSIACDESCDTALLCRYVNSDGPQEEIIKLIPLKGQTRGEDICEAVLK----------CLNENGINTN---HLISVATDGAPSMRGSKRGFVTLLQKALDRNLLAFHCILHQEALCAQTFPSECMVVMNLVIEMVNKIIAKALNHRQFRALLDEVDSEYSDLLLHNKVRWLSKDEVLRRFVACLEHVKTFLKSKDLIYPQLEDTEWLEKLHFM 384 HSP 2 Score: 50.8322 bits (120), Expect = 3.683e-6 Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = -3 Query: 1263 FNQDWTKSFVFICNTDGIPTCHICQEKLEYN-KSNFERYF 1379 FN WT+SF F+ N +G+P C +C EKL N KSN ER+F Sbjct: 17 FNVSWTESFAFVANAEGLPECLLCSEKLSNNKKSNVERHF 56
BLAST of SMED30002123 vs. Ensembl Zebrafish
Match: AL928808.1 (pep chromosome:GRCz11:20:17257101:17259573:-1 gene:ENSDARG00000101333.2 transcript:ENSDART00000166397.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AL928808.1) HSP 1 Score: 79.337 bits (194), Expect = 4.928e-15 Identity = 50/144 (34.72%), Postives = 78/144 (54.17%), Query Frame = -2 Query: 322 EMVSIATDGAKSMTGIHKGITMIILQNLNHRIF-KFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EI-ESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 747 ++ +I TDGA +M G +G+ + + F FHCIIHQE +K ++ +M V++I+N + T+ L Q K + E+ E +LL H V+WLSR +VL RF L+ +K F EK EL + +W+ L F+ Sbjct: 250 KLTAIVTDGAPAMLGSERGLVGLCKADDRFPAFWTFHCIIHQEHWVSKKLNLD--HIMKPVLEIVNFVRTHALNHRQFKNLIDELDEDLPSDLLFHCAVRWLSRGHVLSRFFELLNPVKLFLAEKHKEYPELHDPQWISDLAFL 391
BLAST of SMED30002123 vs. Ensembl Xenopus
Match: spag1 (sperm associated antigen 1 [Source:Xenbase;Acc:XB-GENE-853609]) HSP 1 Score: 69.707 bits (169), Expect = 5.720e-13 Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = -2 Query: 421 IATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTN--TLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERF 735 I TDGA++M G ++G+ L+ FHCI+HQE+LC +++ ++M++V K+ N I +L + K FL E+++ Y +LLLH V+WLS L RF Sbjct: 256 IVTDGARAMVGRNQGLAGR-LRKEGIDCHMFHCIVHQEVLCGT--SLKMADIMDVVTKVTNLIRGGNRSLTHRRFKNFLEELDAAYGDLLLHTNVRWLSAGKCLVRF 359 HSP 2 Score: 25.0238 bits (53), Expect = 5.720e-13 Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = -3 Query: 762 LPLSKQTRGEDNTNAVQKCVEDY 830 +PL T+GED NAV+ V Y Sbjct: 225 VPLHGSTKGEDIYNAVKATVTKY 247
BLAST of SMED30002123 vs. Ensembl Xenopus
Match: ENSXETT00000016563.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:4:37379994:37381838:-1 gene:ENSXETG00000009412.1 transcript:ENSXETT00000016563.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 69.3218 bits (168), Expect = 6.147e-13 Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = -2 Query: 421 IATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTN--TLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERF 735 I TDGA++M G ++G+ L+ FHCI+HQE+LC +++ ++M++V K+ N I +L + K FL E+++ Y +LLLH V+WLS L RF Sbjct: 256 IVTDGARAMVGRNQGLAGR-LRKEGIDCHMFHCIVHQEVLCGT--SLKMADIMDVVTKVTNLIRGGNRSLTHRRFKNFLEELDAAYGDLLLHTNVRWLSAGKCLVRF 359 HSP 2 Score: 25.0238 bits (53), Expect = 6.147e-13 Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = -3 Query: 762 LPLSKQTRGEDNTNAVQKCVEDY 830 +PL T+GED NAV+ V Y Sbjct: 225 VPLHGSTKGEDIYNAVKATVTKY 247
BLAST of SMED30002123 vs. Ensembl Xenopus
Match: ENSXETT00000028445.1 (general transcription factor II-I repeat domain-containing protein 2-like [Source:NCBI gene;Acc:101734469]) HSP 1 Score: 51.9878 bits (123), Expect = 2.267e-6 Identity = 44/148 (29.73%), Postives = 69/148 (46.62%), Query Frame = -2 Query: 322 VSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCL-----QLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFF---NEKTIVRHELKEDKWLKKLNFI 741 S+ T+G+KSMT G++ +L+ HCI+H+E+L +++ +VM +V+KI N IL F + K FL E+ + Y + H W S L RF S +I F N I+ L + +L L F+ Sbjct: 243 TSVMTNGSKSMTAKSLGLSA-LLRKEGADCVVLHCIMHEEMLIGT--LLKMSDVMEVVVKISNFILEKRGFITAVTKKKFKTFLDELSAAYGDFDSHKNAYWSSAGQCLFRFFSLRKEIYLFLKDTNYDPILTESLCNEDFLSSLAFL 387
BLAST of SMED30002123 vs. Ensembl Mouse
Match: Gtf2ird2 (GTF2I repeat domain containing 2 [Source:MGI Symbol;Acc:MGI:2149780]) HSP 1 Score: 72.0182 bits (175), Expect = 1.149e-12 Identity = 43/149 (28.86%), Postives = 72/149 (48.32%), Query Frame = -2 Query: 322 YYEMVSIATDGAKSMTGIHKGITMIILQNL-----NHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 753 + ++VS+A+ G +M + G+ + + CIIH E LC QK + + VM++V+ +N I + L L E++SQY +LL H ++WL R VL RF L +I +F + + +L W+ L F+ Sbjct: 604 WSKLVSVASTGTPAMMDANSGLVTKLRARAASCCKGADLKSVRCIIHPEWLCAQK--LRMGHVMDVVVDSVNWICSRGLNHGDFTTLLYELDSQYGSLLYHTALKWLGRGLVLRRFFESLEEIDSFMSSRGKPVPQLSSRDWILDLAFL 750
BLAST of SMED30002123 vs. Ensembl Mouse
Match: Zbed5 (zinc finger, BED type containing 5 [Source:MGI Symbol;Acc:MGI:1919220]) HSP 1 Score: 69.3218 bits (168), Expect = 7.561e-12 Identity = 39/141 (27.66%), Postives = 73/141 (51.77%), Query Frame = -2 Query: 322 SIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHE--LKEDKWLKKLNFI 738 + TDGA + G G ++L N + + HC++H + L ++ P + EVM V+ +N + ++L + +++ LLLH + +WLSR VL+R ++K FFN+K I + E ++ L+K+ ++ Sbjct: 401 GVCTDGAPATLGCQSGFQRLVL-NESPKAIGAHCMLHLQTLAMKTLPQDFQEVMKSVLSSVNFVKASSLNSRLFLQLCSDLDEPSKTLLLHTEGRWLSRGKVLKRIFELRDELKMFFNQKAIRQFEALFSDNSALQKVAYL 540
BLAST of SMED30002123 vs. Ensembl Mouse
Match: Zmym6 (zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505]) HSP 1 Score: 53.5286 bits (127), Expect = 6.619e-7 Identity = 39/143 (27.27%), Postives = 72/143 (50.35%), Query Frame = -2 Query: 319 VSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEK--TIVRHELKEDKWLKKLNFIG 741 V TDGA SMT + + I + + + HC IH+E L +K + E++ +I++ + + L E+ S++ NL L+ +V+WLSR +L R +I+ F N+K + R+ +++W+ KL ++ Sbjct: 808 VGFCTDGAASMTDRYFRLRSKIQEIAKNTVTFTHCFIHREHLAAKKLSPCLHEILLQSSQILSFVKNSASDSQMLTILCEEMGSEHVNLPLNAEVRWLSRGRILTRLFELRHEIEIFLNQKHSDLARY-FHDEEWIAKLAYLA 949
BLAST of SMED30002123 vs. Ensembl Mouse
Match: Zmym6 (zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505]) HSP 1 Score: 53.5286 bits (127), Expect = 6.838e-7 Identity = 39/143 (27.27%), Postives = 72/143 (50.35%), Query Frame = -2 Query: 319 VSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEK--TIVRHELKEDKWLKKLNFIG 741 V TDGA SMT + + I + + + HC IH+E L +K + E++ +I++ + + L E+ S++ NL L+ +V+WLSR +L R +I+ F N+K + R+ +++W+ KL ++ Sbjct: 900 VGFCTDGAASMTDRYFRLRSKIQEIAKNTVTFTHCFIHREHLAAKKLSPCLHEILLQSSQILSFVKNSASDSQMLTILCEEMGSEHVNLPLNAEVRWLSRGRILTRLFELRHEIEIFLNQKHSDLARY-FHDEEWIAKLAYLA 1041
BLAST of SMED30002123 vs. UniProt/SwissProt
Match: sp|Q86UP8|GTD2A_HUMAN (General transcription factor II-I repeat domain-containing protein 2A OS=Homo sapiens OX=9606 GN=GTF2IRD2 PE=1 SV=3) HSP 1 Score: 77.0258 bits (188), Expect = 1.704e-13 Identity = 47/153 (30.72%), Postives = 81/153 (52.94%), Query Frame = -2 Query: 322 YYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFH---------CIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 753 + ++VS+A+ G +M + G+ + L R+ F CIIH E LC QK ++ VM++V+K +N I + L + L E++SQY +LL + +++WLSR VL+RF L +I +F + + +L W++ L F+ Sbjct: 610 WSKLVSVASTGTPAMVDANNGL----VTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMD--HVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFL 756 HSP 2 Score: 21.557 bits (44), Expect = 1.704e-13 Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = -1 Query: 272 DITKKLNELNVKLKGN 319 D+T LN LN+ L+G+ Sbjct: 758 DMTMHLNALNISLQGH 773
BLAST of SMED30002123 vs. UniProt/SwissProt
Match: sp|Q6EKJ0|GTD2B_HUMAN (General transcription factor II-I repeat domain-containing protein 2B OS=Homo sapiens OX=9606 GN=GTF2IRD2B PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.231e-13 Identity = 47/150 (31.33%), Postives = 79/150 (52.67%), Query Frame = -2 Query: 322 MVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFH---------CIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 744 +VS+A+ G +M + G+ + L R+ F CIIH E LC QK ++ VM++V+K +N I + L + L E++SQY +LL + +++WLSR VL+RF L +I +F + + +L W++ L F+ Sbjct: 613 LVSVASTGTPAMVDANNGL----VTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMD--HVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFL 756 HSP 2 Score: 21.557 bits (44), Expect = 2.231e-13 Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = -1 Query: 272 DITKKLNELNVKLKGN 319 D+T LN LN+ L+G+ Sbjct: 758 DMTMHLNALNISLQGH 773
BLAST of SMED30002123 vs. UniProt/SwissProt
Match: sp|P0CF97|F200B_HUMAN (Protein FAM200B OS=Homo sapiens OX=9606 GN=FAM200B PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.894e-12 Identity = 43/140 (30.71%), Postives = 77/140 (55.00%), Query Frame = -2 Query: 322 SIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNE-KTIVRHELKEDKWLKKLNFI 738 I +DG +MTG H + +L+ N+ HC IH+E L ++ P ++EV+ +K++N I ++L L+ F EI + + +LL H K++WLS+ +L R ++I F E K+ + ++D W+ KL ++ Sbjct: 293 GITSDGTATMTGKHSRVIKKLLEVTNNGAVWNHCFIHREGLASREIPQNLMEVLKNAVKVVNFIKGSSLNSRLLETFCSEIGTNHTHLLYHTKIRWLSQGKILSRVYELRNEIHFFLIEKKSHLASIFEDDTWVTKLAYL 432
BLAST of SMED30002123 vs. UniProt/SwissProt
Match: sp|A4IFA3|GT2D2_BOVIN (General transcription factor II-I repeat domain-containing protein 2 OS=Bos taurus OX=9913 GN=GTF2IRD2 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.087e-12 Identity = 42/149 (28.19%), Postives = 78/149 (52.35%), Query Frame = -2 Query: 322 YYEMVSIATDGAKSMTGIHKGI-----TMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 753 + ++VS+A+ G +M + G+ + + + + CIIH E LC QK ++ +M++V+ +N I + L + L E++ QY +LL + +++WLSR VL+RF L +I +F + + +L W+K L F+ Sbjct: 611 WSKLVSVASTGTPAMVDANDGLVTKLKSKVAMVCKGSDLKSVCCIIHPESLCAQKLKMD--HIMSVVVNAVNWICSRGLNHSEFTTLLYELDCQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSQDWIKDLAFL 757 HSP 2 Score: 21.557 bits (44), Expect = 3.087e-12 Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = -1 Query: 269 DITKKLNELNVKLKGNG 319 D+T LN LN+ L+G+ Sbjct: 759 DMTMHLNTLNISLQGHS 775
BLAST of SMED30002123 vs. UniProt/SwissProt
Match: sp|Q6R2W3|SCND3_HUMAN (SCAN domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ZBED9 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 5.448e-12 Identity = 45/142 (31.69%), Postives = 74/142 (52.11%), Query Frame = -2 Query: 319 VSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKED-KWLKKLNFIG 741 V + +DGA SMTG H + I + L HC IH+E L ++K E+ V+N ++KI+N I +N+L +E+ + LLLH +++WLSR VL R +++ F K + +L +D W +L ++ Sbjct: 966 VGVCSDGAASMTGKHSEVVTQI-KELAPECKTTHCFIHRESLAMKKISAELNSVLNDIVKIVNYIKSNSLNSRLFSLLCDNMEADHKQLLLHAEIRWLSRGKVLSRMFEIRNELLVFLQGKKPMWSQLFKDVNWTARLAYLS 1106
BLAST of SMED30002123 vs. TrEMBL
Match: A0A4Y2QT58 (General transcription factor II-I repeat domain-containing protein 2A OS=Araneus ventricosus OX=182803 GN=GTF2IRD2_65 PE=4 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 2.568e-89 Identity = 147/299 (49.16%), Postives = 188/299 (62.88%), Query Frame = -2 Query: 322 NDANLTSLTISVQITKRGK*FIDCEYFKDCFISRAEELFSNFKNKKS--------NICHYMLK*YKIEL*HNTT*-HV*LIRXXXXXXXAMDESCNIEDTYTLLFS---------LGICRLKAQKKN*ESAALKANSWRR*HKRCAKMRGRL*NPYYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 1164 N+ NL S +S++I KRGK F D EY KDCFI +EELF +FKNK + ++ ++ N T V I+LASALSLA+DESC+I T + + LG+ L Q + + A ++C K G N + VSIATDGA+SMTGIH+G+T I+ + +NH I FHCIIHQE LC Q FP EIVEVMNLVIKIINSIL L+ Q K+FL EI+SQ+ +LLLHNKV+WLSR NVL+RF LS+IKTF NEK+I +L+E KWL+K NF+ Sbjct: 98 NNVNLASFAVSLEIAKRGKPFTDGEYVKDCFIRASEELFRDFKNKAEIMKKIKDLPLSAKTVQDRTAKMSSNVTHMQVEDIQLASALSLAIDESCDILATLFVRYMSSRGPKEELLGLLPLSGQTRGEDIANAV--------QKCLKDNGIDIN---KTVSIATDGARSMTGIHRGVTSILQKKINHEILTFHCIIHQEALCAQTFPAEIVEVMNLVIKIINSILVKELYHRQFKDFLEEIDSQFSDLLLHNKVRWLSRRNVLQRFALNLSEIKTFLNEKSIDHPKLEEHKWLQKFNFM 385 HSP 2 Score: 75.485 bits (184), Expect = 2.568e-89 Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = -3 Query: 108 LDKVVCFENNLLPFVKDTESGKLLHFENLKQYRDETNATIDTNYFSMAI 254 L++VVCFE N L + D E+GKLLHF+NLKQYRDETNATIDTNY S+A+ Sbjct: 410 LEEVVCFEKNYLFLLVDMENGKLLHFKNLKQYRDETNATIDTNYCSIAL 458 HSP 3 Score: 74.7146 bits (182), Expect = 2.568e-89 Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = -3 Query: 1167 FNQDWTKSFVFICNTDGIPTCHICQEKLEYN-KSNFERYFTKK------TLSNRRREEKSC*RASKTKKXSNSMLSNF 1379 FNQDWTKSF FI NTDG+PTC IC EKL +N KSN ER+FT K +K+ KT++ S+SMLSN+ Sbjct: 16 FNQDWTKSFAFIYNTDGLPTCLICHEKLVHNTKSNLERHFTTKHTQFAGKYPTGDARKKAVEELQKTQQQSSSMLSNW 93
BLAST of SMED30002123 vs. TrEMBL
Match: A0A4Y2EE01 (General transcription factor II-I repeat domain-containing protein 2A OS=Araneus ventricosus OX=182803 GN=GTF2IRD2_509 PE=4 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 1.968e-75 Identity = 139/294 (47.28%), Postives = 184/294 (62.59%), Query Frame = -2 Query: 322 NLTSLTISVQITKRGK*FIDCEYFKDCFISRAEELFSNFKNKKS--------NICHYMLK*YKIEL*HNTT*-HV*LIRXXXXXXXAMDESCNIEDTYTLLFSLGICRLKAQKKN*E-------SAALKANSWRR*HKRCAKMRGRL*NPYYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 1155 NL S +S+++ KRGK F D EY KDC I +EELF +FKNK + ++ ++ N T V I+LASALSLA+D SC+I+DT + +L + + +Q E S + ++C + G N ++VSIA DGA+SMTGIH+G+T I+ + +N I F CIIHQE LC Q FP EIVEVMNLVIKIINSILT L+ Q ++FL EI+SQ+ +LLLHNKV+W SR NVL+R CLS+IKTF NEK+ EL+EDKWL+K NF+ Sbjct: 13 NLASFAVSLEVAKRGKPFTDGEYAKDCVIRASEELFRDFKNKAEIMKKIKDLPLSAKTVQDRTAKMSSNVTHMQVEDIQLASALSLAIDVSCDIKDTTQV--TLFVRYMSSQGPKEELLGLLPLSGQTRGEDIANAVQKCLEGNGIDIN---KIVSIANDGARSMTGIHRGVTSILQKKINLEILTFRCIIHQEALCAQTFPAEIVEVMNLVIKIINSILTKALYHRQFRDFLEEIDSQFSDLLLHNKVRWFSRGNVLQRSALCLSEIKTFLNEKSADHPELEEDKWLQKFNFM 301 HSP 2 Score: 90.5077 bits (223), Expect = 1.968e-75 Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = -3 Query: 96 TQPMLDKVVCFENNLLPFVKDTESGKLLHFENLKQYRDETNATIDTNYFSMAINKMK 266 T +L++VVCFE LL FV+D ESGKLLHF+NLKQYRDETNATIDTNYFS+A+ M+ Sbjct: 322 TYALLEEVVCFEKTLLLFVEDIESGKLLHFKNLKQYRDETNATIDTNYFSIALKNMR 378
BLAST of SMED30002123 vs. TrEMBL
Match: A0A4Y2UQ47 (General transcription factor II-I repeat domain-containing protein 2A OS=Araneus ventricosus OX=182803 GN=GTF2IRD2_428 PE=4 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 4.944e-75 Identity = 149/318 (46.86%), Postives = 196/318 (61.64%), Query Frame = -2 Query: 322 NDANLTSLTISVQITKRGK*FIDCEYFKDCFISRAEELFSNFKNKKS---------------------NICHYMLK*YKIEL*HNTT*-HV*LIRXXXXXXXAMDESCNIEDTYTL-LFS------------LGICRLKAQKK--N*ESAALKANSWRR*HKRCAKMRGRL*NPYYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 1164 N+ NL SL +S++I KRGK F D EY KDCFI +EELF +FKNK ++ ++ ++ N T V I+LASALSLA+DESC+++DT + LF+ LG+ L Q + + E+A ++C + G N ++VSIATDGA+SMTGIH+G+T I+ + +NH I FHCIIHQE LC Q FP EIVEVMNLVIKIINSIL +L+ Q K+FL EI+ Q+ +LLLHNKV+W SR NVL+RF CLS+IK F NEK+I EL+EDKWL+ NF+ Sbjct: 99 NNVNLVSLAVSLEIAKRGKPFTDGEYVKDCFIRASEELFRDFKNKAEIMKKFFIQSVTSKCVCDIKDLSLSAKTVQDRTAKMSSNVTHMQVEDIQLASALSLAIDESCDVKDTAQVTLFARYMSSQGPKEELLGLLPLSGQTRGEDIENAV----------QKCLEDNGIDIN---KIVSIATDGARSMTGIHRGVTSILQKKINHEILTFHCIIHQESLCAQTFPAEIVEVMNLVIKIINSILAKSLYHRQFKDFLEEIDDQFSDLLLHNKVRWFSRGNVLQRFALCLSEIKAFLNEKSIDHPELEEDKWLQNFNFM 403 HSP 2 Score: 77.0258 bits (188), Expect = 4.944e-75 Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = -3 Query: 1167 FNQDWTKSFVFICNTDGIPTCHICQEKLEYN-KSNFERYFTKK------TLSNRRREEKSC*RASKTKKXSNSMLSNF 1379 FNQDWT+SF FICNTDG+PTC IC EKL +N KSN ER+FT K +K+ K K+ S+SMLSN+ Sbjct: 17 FNQDWTESFAFICNTDGLPTCLICHEKLAHNKKSNLERHFTTKHTQFAGKFPTGDARKKAVEELKKKKQQSSSMLSNW 94
BLAST of SMED30002123 vs. TrEMBL
Match: A0A4Y2UIE0 (General transcription factor II-I repeat domain-containing protein 2A (Fragment) OS=Araneus ventricosus OX=182803 GN=GTF2IRD2_61 PE=4 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 3.553e-74 Identity = 140/313 (44.73%), Postives = 188/313 (60.06%), Query Frame = -2 Query: 253 NDANLTSLTISVQITKRGK*FIDCEYFKDCFISRAEELFSNFKNKKSNICHYMLK*YKIEL*HNTT*HV*LIRXXXXXXXAMDESCNIEDTYTLLFSLGICRLKAQKKN*ESAAL-------KANSWRR*HKRCAKMRGRL*NPYYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNF-IGISQR-N*MS*M*N*KEMGNPAYA 1164 N+ NL S + ++I +RGK F D + R ++ SN+ H ++ I+LASALSLA+DESC+I+DT + +L + + +Q E L + ++C + G N ++VSIATDGA+ MTGIH+G+T I+ + +NH I FHCIIHQE LCVQ FP EIVEVMNLVIKIINSIL L+ Q K+FL EI+SQ+ +LLLHNKV+WLSR NVL+RF CLS+IKTF N K+ EL+EDKWL+K NF + I+ + N ++ K GNPAYA Sbjct: 103 NNVNLASFAVLLEIARRGKPFTDVQ-------DRTAKM-------SSNVTHMQVE---------------DIQLASALSLAIDESCDIKDTAQV--TLFVRYMSSQGPKEELLGLLPFLGQTRGEDIANAVQKCLEDNGIDIN---KIVSIATDGARIMTGIHRGVTSILQKKINHEILMFHCIIHQEALCVQTFPAEIVEVMNLVIKIINSILAKALYHRQFKDFLEEIDSQFSDLLLHNKVRWLSRGNVLQRFALCLSEIKTFLNGKSNEHPELEEDKWLQKFNFMVDITMKLNELNLKLQGK--GNPAYA 379 HSP 2 Score: 67.781 bits (164), Expect = 3.553e-74 Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = -1 Query: 1256 RRRDKLKKKIENLIRIGQSRLCSYATQMAFRLVIFAKKNLNTI-SQILRDTSLK 1414 ++R++LKKK EN I+IG+ RL SYATQMAFRLV FA KN +TI SQI +DTSL+ Sbjct: 9 KKREELKKKTENSIKIGRRRLHSYATQMAFRLVSFATKNSHTIRSQIWKDTSLQ 62 HSP 3 Score: 57.3806 bits (137), Expect = 3.553e-74 Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = -3 Query: 108 DTESGKLLHFENLKQYRDETNATIDTNYFSMAI 206 D S KL HF+NLKQYRDETNATIDTNYFS+A+ Sbjct: 396 DMVSSKLPHFKNLKQYRDETNATIDTNYFSIAL 428
BLAST of SMED30002123 vs. TrEMBL
Match: A0A4Y2HGU3 (General transcription factor II-I repeat domain-containing protein 2A OS=Araneus ventricosus OX=182803 GN=GTF2IRD2_89 PE=4 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 3.652e-74 Identity = 100/165 (60.61%), Postives = 123/165 (74.55%), Query Frame = -2 Query: 253 EMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFIGISQRN*MS*M*N*KEMGNPAYA 747 ++VSI TDGA+SMTGIHKG+T+I+ + +NH I FHCIIHQE LC Q P EIVEVMNLVIKIINSIL L Q K+FL EI+SQ+ +LLLHNKV+WLSR NVL+RF CLS+IKTF NEK+I EL++DKWL+K NF+ + + + GNPAYA Sbjct: 103 KIVSIETDGARSMTGIHKGVTLILQKKINHEILTFHCIIHQEALCAQTVPAEIVEVMNLVIKIINSILAKALCHRQFKDFLVEIDSQFSDLLLHNKVRWLSRGNVLQRFALCLSEIKTFLNEKSIGHPELEKDKWLQKFNFMLDTTMKLNALNLKLQGKGNPAYA 267 HSP 2 Score: 85.5001 bits (210), Expect = 3.652e-74 Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = -3 Query: 108 PMLDKVVCFENNLLPFVKDTESGKLLHFENLKQYRDETNATIDTNYFSMAI 260 +L++VVCFE LL FV+DTES KLLHF+NLKQYRDETNATIDTNYFS+A+ Sbjct: 267 ALLEEVVCFEKKLLLFVEDTESSKLLHFKNLKQYRDETNATIDTNYFSIAL 317 HSP 3 Score: 37.3502 bits (85), Expect = 3.652e-74 Identity = 21/37 (56.76%), Postives = 23/37 (62.16%), Query Frame = -3 Query: 744 PKRRIRNL-PLSKQTRGEDNTNAVQKCVEDYEIHIMK 851 PK + L PL QTR ED NAVQKC+ED I I K Sbjct: 67 PKEELLGLFPLLGQTRVEDVANAVQKCLEDNGIDINK 103 HSP 4 Score: 29.6462 bits (65), Expect = 3.652e-74 Identity = 25/72 (34.72%), Postives = 34/72 (47.22%), Query Frame = -1 Query: 836 QKIKYLPLYAKMIQDRT------VTQYNITRVAH*TGLCFITCYG*VLQXXXXXXXXXXXRYMSSQSPKEEL 1033 +K+K LPL AK +QDRT VT + + + L ++ + V YMSSQ PKEEL Sbjct: 2 KKMKDLPLSAKTVQDRTAKMSSYVTHMQVEDIQLASALSLAIDESCAIKDTAQGTLFVR--YMSSQGPKEEL 71
BLAST of SMED30002123 vs. Ensembl Cavefish
Match: ENSAMXT00000049756.1 (pep primary_assembly:Astyanax_mexicanus-2.0:21:10276151:10280466:-1 gene:ENSAMXG00000035254.1 transcript:ENSAMXT00000049756.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 114.005 bits (284), Expect = 1.904e-26 Identity = 58/141 (41.13%), Postives = 84/141 (59.57%), Query Frame = -2 Query: 319 SIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFC-LQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFIG 738 ++ TDGA SM G KG +I + + H I K HCIIHQE LC + + +VM V K+IN ++ + Q + L E++S+Y +L LH+ V+WLS VLERF SC+ IK F EK +L+++KW+ KL F+ Sbjct: 244 AVTTDGAPSMVGKQKGAVKLIEEKVGHPIMKLHCIIHQENLCAKMSNSDFNDVMATVAKVINFLVKRSALTHRQFRSLLEEMDSEYADLPLHSAVRWLSCGKVLERFVSCIDAIKVFLAEKGQQYPQLEDEKWIVKLFFLA 384
BLAST of SMED30002123 vs. Ensembl Cavefish
Match: ENSAMXT00000031692.1 (pep primary_assembly:Astyanax_mexicanus-2.0:7:21501471:21504188:-1 gene:ENSAMXG00000043766.1 transcript:ENSAMXT00000031692.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 100.523 bits (249), Expect = 1.822e-23 Identity = 54/141 (38.30%), Postives = 80/141 (56.74%), Query Frame = -2 Query: 319 SIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFC-LQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFIG 738 ++ TDGA SM G KG +I + + H + K HCIIHQE LC + + +VM V K+IN ++ + Q + L E++S+Y +L LH V+WLS VLERF SC+ IK F EK +L+++ + K F+ Sbjct: 84 AVTTDGAPSMVGKQKGAVKLIEEKVGHPVMKLHCIIHQENLCAKMSNSDFNDVMATVAKVINFLVKRSALTHRQFRSLLEEMDSEYADLPLHLAVRWLSCGKVLERFVSCIDAIKVFLAEKGQQYPQLEDENCIVKHFFLA 224 HSP 2 Score: 29.261 bits (64), Expect = 1.822e-23 Identity = 16/37 (43.24%), Postives = 24/37 (64.86%), Query Frame = -1 Query: 218 DITKKLNELNVKLKGNG*PSLCLIK---LFVSKIIYF 319 DIT +LNELN++L+G G L + + FV+K+ F Sbjct: 225 DITGQLNELNLRLQGAGQTVLDMFETWTAFVTKLAVF 261
BLAST of SMED30002123 vs. Ensembl Cavefish
Match: ENSAMXT00000039226.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000099.1:564912:568121:1 gene:ENSAMXG00000042173.1 transcript:ENSAMXT00000039226.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 102.449 bits (254), Expect = 6.571e-23 Identity = 91/291 (31.27%), Postives = 137/291 (47.08%), Query Frame = -2 Query: 322 TSLTISVQITKRGK*FIDCEYFKDCFISRAEELFSNFKNK---KSNICHYMLK*Y----KIEL*HNTT*HV*L--IRXXXXXXXAMDESCNIEDTYTLLFSLGICRLKAQKKN*ESAALKANSWRR*HK-----RCAKMRGRL*NPYYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIF-KFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 1149 S +S + K K F D E FK+ + ++ LF +FKNK ++ I + L ++EL L + SL DES +I DT L+ + + A K L N R R L P+ ++VSI DGA +M GIH G + ++ F +HC+IHQ+ L + V+ VM +V+KI+NSI L K L E++++Y +L+LH V+WLSR VL+RF + L +I +F + EL +D WL L F+ Sbjct: 96 ASFRVSHLLAKHKKTFTDGELFKEAMLFASDSLFRDFKNKDEIRTAISNMSLGPATVVRRVELLSEDISKQVLSDLSRCEYFSLQFDESVDITDTAQLVVFVRMTFSDASVKEDFLTLLPLNERTRGEDIYRAFRTYATENDL--PFQKLVSITRDGAPAMCGIHAGFIALCRKDPIFPAFVSYHCVIHQQALASKV--VDFSHVMTVVVKIVNSIRAKALQHRLFKSLLDELDAEYGDLILHADVRWLSRGKVLQRFINLLPEIISFLKSRKEEYRELADDTWLLDLAFL 382 HSP 2 Score: 25.409 bits (54), Expect = 6.571e-23 Identity = 14/34 (41.18%), Postives = 19/34 (55.88%), Query Frame = -1 Query: 218 DITKKLNELNVKLKGNG*PSLCLIKLFVSKIIYF 319 D+T KLNELN +L+G C + VS + F Sbjct: 384 DLTSKLNELNCELQGKD----CDVPHMVSAVNAF 413
BLAST of SMED30002123 vs. Ensembl Cavefish
Match: ENSAMXT00000030525.1 (pep primary_assembly:Astyanax_mexicanus-2.0:1:12992682:12994541:1 gene:ENSAMXG00000035573.1 transcript:ENSAMXT00000030525.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 92.8189 bits (229), Expect = 8.063e-20 Identity = 51/145 (35.17%), Postives = 80/145 (55.17%), Query Frame = -2 Query: 322 PYYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 756 P+ V I TDGA SMTG G+ ++ HCIIHQ+ LC + + VM++V+K IN I + +L + + L E+ES+Y ++L +V+WLSR N+L+RF +++K F + + L + KWL L F+ Sbjct: 293 PWKRFVGITTDGAPSMTGRKNGLEEESVEE----AIALHCIIHQQALCSKCLKFD--NVMSVVVKCINQIRSRSLKHRRFRALLEEMESEYGDVLYFTEVRWLSRGNILKRFFELRAEVKAFMEKDGVAVTVLSDPKWLMDLAFL 431 HSP 2 Score: 24.2534 bits (51), Expect = 8.063e-20 Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = -1 Query: 269 DITKKLNELNVKLKGNG 319 DIT +LN LN KL+G G Sbjct: 433 DITHELNVLNKKLQGQG 449
BLAST of SMED30002123 vs. Ensembl Cavefish
Match: ENSAMXT00000037411.1 (pep primary_assembly:Astyanax_mexicanus-2.0:13:18144228:18145385:-1 gene:ENSAMXG00000033115.1 transcript:ENSAMXT00000037411.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 88.5817 bits (218), Expect = 1.045e-18 Identity = 50/148 (33.78%), Postives = 79/148 (53.38%), Query Frame = -2 Query: 322 YYEMVSIATDGAKSMTGIHKGITMIILQNLNHR----IFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 753 + ++ SI TDGA M G +G+T + + + R + HC+IHQ+ LC + + VM +V+ IN I L + ++FL E+ES Y ++L + +V+WLSR VL RF L +I F + K EL + +W L F+ Sbjct: 35 WSKLASITTDGAPCMVGASRGLTGRVKREMEERGLTAPLQVHCLIHQQALCCKVLKWD--SVMKVVVSCINFIRAKGLKHREFQQFLSELESAYGDVLYYTEVRWLSRGRVLRRFYELLPEINAFLHSKDKTVPELLDPEWKWHLAFL 180 HSP 2 Score: 25.0238 bits (53), Expect = 1.045e-18 Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = -1 Query: 269 DITKKLNELNVKLKGNG 319 D+T+ LN LN++L+G G Sbjct: 182 DVTEMLNSLNLQLQGQG 198
BLAST of SMED30002123 vs. Ensembl Medaka
Match: ENSORLT00000033718.1 (general transcription factor II-I repeat domain-containing protein 2 [Source:NCBI gene;Acc:110015985]) HSP 1 Score: 148.673 bits (374), Expect = 2.243e-56 Identity = 66/141 (46.81%), Postives = 99/141 (70.21%), Query Frame = -2 Query: 322 MVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 744 +V +A+DGA SMTG KG ++ ++L+ ++ FHCI+HQE LC Q FP E +VM+LVI+I+N I+ N L Q + L E++S Y +LLLHNKV+WLSR VL+RF +CL ++K F + K + EL++ +W +KL+F+ Sbjct: 247 LVPVASDGAPSMTGAQKGFVALLQKSLDRKLLTFHCILHQEALCAQTFPPECTQVMDLVIQIVNKIMANGLNHRQFRSLLDELDSAYSDLLLHNKVRWLSRGVVLKRFAACLEEVKVFLSNKGLTFPELEQPEWQEKLHFM 387 HSP 2 Score: 43.8986 bits (102), Expect = 2.243e-56 Identity = 21/45 (46.67%), Postives = 28/45 (62.22%), Query Frame = -2 Query: 1030 NDANLTSLTISVQITKRGK*FIDCEYFKDCFISRAEELFSNFKNK 1164 N TS ++ +I K GK F D EY K+ FI ++ LFS+FKNK Sbjct: 96 NSTTCTSFVVAQEIVKHGKPFTDGEYLKETFIKISKHLFSDFKNK 140 HSP 3 Score: 39.6614 bits (91), Expect = 2.243e-56 Identity = 19/43 (44.19%), Postives = 23/43 (53.49%), Query Frame = -3 Query: 1254 FNQDWTKSFVFICNTDGIPTCHICQEKLEYN-KSNFERYFTKK 1379 FN W SF F + G+P C IC E L + KSN R+F K Sbjct: 14 FNATWADSFAFTADETGLPVCLICGEILANDKKSNVARHFENK 56 HSP 4 Score: 31.5722 bits (70), Expect = 2.243e-56 Identity = 15/26 (57.69%), Postives = 20/26 (76.92%), Query Frame = -1 Query: 959 QKIKYLPLYAKMIQDRTVTQY-NITR 1033 QKIK +PL AK++QDR+V N+TR Sbjct: 145 QKIKDMPLSAKIVQDRSVNMAENVTR 170 HSP 5 Score: 31.187 bits (69), Expect = 2.243e-56 Identity = 17/47 (36.17%), Postives = 20/47 (42.55%), Query Frame = -3 Query: 735 R*VYVVSKPKRRIRNLPLSKQTRGEDNTNAVQKCVEDYEIHIMKWFP 875 R V + I +PL QTRGED AV C+ EI P Sbjct: 203 RYVSAAGPQEEMIELIPLKGQTRGEDICEAVLHCLRTKEIKTTHLVP 249 HSP 6 Score: 26.1794 bits (56), Expect = 2.243e-56 Identity = 12/32 (37.50%), Postives = 19/32 (59.38%), Query Frame = -1 Query: 245 EKIKLHRDITKKLNELNVKLKGNG*PSLCLIK 340 EK+ D+T LN LN L+G G +L +++ Sbjct: 382 EKLHFMVDMTAHLNTLNTSLQGKGGTALHMLE 413
BLAST of SMED30002123 vs. Ensembl Medaka
Match: ENSORLT00000040270.1 (pep primary_assembly:ASM223467v1:5:3656515:3660788:1 gene:ENSORLG00000025153.1 transcript:ENSORLT00000040270.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 128.257 bits (321), Expect = 7.956e-36 Identity = 60/145 (41.38%), Postives = 90/145 (62.07%), Query Frame = -2 Query: 322 PYYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 756 P ++VS+ TDGA M G ++G ++ ++ RI FHCI+HQE LC Q ++ EVM+LV++++N I+ L Q K L E+ + Y LLLH+ V+WLSR VL RF +CLS+I+TF K + EL + +WL K ++ Sbjct: 240 PMDKLVSVCTDGAPCMVGKNRGFVALLREHEKRRILSFHCILHQEALCAQMCGEQLGEVMSLVVRVVNFIVARALNDRQFKALLEEVGNSYPGLLLHSNVRWLSRGKVLSRFAACLSEIRTFLERKNVEHPELADTEWLLKFYYL 384 HSP 2 Score: 38.891 bits (89), Expect = 7.956e-36 Identity = 17/36 (47.22%), Postives = 24/36 (66.67%), Query Frame = -3 Query: 138 VVCFENNLLPFVKDTESGKLLHFENLKQYRDETNAT 245 V FEN L F+ D E+G+LLHFE L +++D A+ Sbjct: 412 VFAFENRLELFIADIETGRLLHFEKLAEFKDACIAS 447 HSP 3 Score: 23.8682 bits (50), Expect = 7.956e-36 Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = -1 Query: 269 DITKKLNELNVKLKGNG 319 D+T LN LNVK++G G Sbjct: 386 DMTGHLNHLNVKMQGVG 402
BLAST of SMED30002123 vs. Ensembl Medaka
Match: ENSORLT00000027991.1 (pep primary_assembly:ASM223467v1:15:8817619:8823815:1 gene:ENSORLG00000022420.1 transcript:ENSORLT00000027991.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 128.257 bits (321), Expect = 8.089e-36 Identity = 60/145 (41.38%), Postives = 90/145 (62.07%), Query Frame = -2 Query: 322 PYYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 756 P ++VS+ TDGA M G ++G ++ ++ RI FHCI+HQE LC Q ++ EVM+LV++++N I+ L Q K L E+ + Y LLLH+ V+WLSR VL RF +CLS+I+TF K + EL + +WL K ++ Sbjct: 240 PMDKLVSVCTDGAPCMVGKNRGFVALLREHEKRRILSFHCILHQEALCAQMCGEQLGEVMSLVVRVVNFIVARALNDRQFKALLEEVGNSYPGLLLHSNVRWLSRGKVLSRFAACLSEIRTFLERKNVEHPELADTEWLLKFYYL 384 HSP 2 Score: 38.891 bits (89), Expect = 8.089e-36 Identity = 17/36 (47.22%), Postives = 24/36 (66.67%), Query Frame = -3 Query: 138 VVCFENNLLPFVKDTESGKLLHFENLKQYRDETNAT 245 V FEN L F+ D E+G+LLHFE L +++D A+ Sbjct: 412 VFAFENRLELFIADIETGRLLHFEKLAEFKDACIAS 447 HSP 3 Score: 23.8682 bits (50), Expect = 8.089e-36 Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = -1 Query: 269 DITKKLNELNVKLKGNG 319 D+T LN LNVK++G G Sbjct: 386 DMTGHLNHLNVKMQGVG 402
BLAST of SMED30002123 vs. Ensembl Medaka
Match: ENSORLT00000035623.1 (pep primary_assembly:ASM223467v1:9:5067000:5069708:1 gene:ENSORLG00000026230.1 transcript:ENSORLT00000035623.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 127.872 bits (320), Expect = 9.982e-36 Identity = 60/145 (41.38%), Postives = 90/145 (62.07%), Query Frame = -2 Query: 322 PYYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 756 P ++VS+ TDGA M G ++G ++ ++ RI FHCI+HQE LC Q ++ EVM+LV++++N I+ L Q K L E+ + Y LLLH+ V+WLSR VL RF +CLS+I+TF K + EL + +WL K ++ Sbjct: 267 PMDKLVSVCTDGAPCMVGKNRGFVALLREHEKRRILSFHCILHQEALCAQMCGEQLGEVMSLVVRVVNFIVARALNDRQFKALLEEVGNSYPGLLLHSNVRWLSRGKVLSRFAACLSEIRTFLERKNVEHPELADTEWLLKFYYL 411 HSP 2 Score: 39.2762 bits (90), Expect = 9.982e-36 Identity = 17/36 (47.22%), Postives = 24/36 (66.67%), Query Frame = -3 Query: 138 VVCFENNLLPFVKDTESGKLLHFENLKQYRDETNAT 245 V FEN L F+ D E+G+LLHFE L +++D A+ Sbjct: 439 VFAFENRLELFIADIETGRLLHFEKLAEFKDACIAS 474 HSP 3 Score: 23.8682 bits (50), Expect = 9.982e-36 Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = -1 Query: 269 DITKKLNELNVKLKGNG 319 D+T LN LNVK++G G Sbjct: 413 DMTGHLNHLNVKMQGVG 429
BLAST of SMED30002123 vs. Ensembl Medaka
Match: ENSORLT00000038486.1 (pep primary_assembly:ASM223467v1:11:14048492:14066451:1 gene:ENSORLG00000022236.1 transcript:ENSORLT00000038486.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 125.176 bits (313), Expect = 4.672e-35 Identity = 60/145 (41.38%), Postives = 88/145 (60.69%), Query Frame = -2 Query: 322 PYYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 756 P ++VS+ TDGA M G ++G ++ ++ RI FHCI+HQE LC Q + EVM+LV++++N I+ L Q K L E+ Y LLLH+ V+WLSR VL RF +CLS+I+TF K + EL + +WL K ++ Sbjct: 147 PMDKLVSVCTDGALCMVGKNRGFVALLREHEKRRILSFHCILHQEALCAQMCGEQFGEVMSLVVRVVNFIVARALNDRQFKALLDEVGYSYPGLLLHSNVRWLSRGTVLSRFAACLSEIRTFLERKNVEHPELADTEWLLKFYYL 291 HSP 2 Score: 39.6614 bits (91), Expect = 4.672e-35 Identity = 16/41 (39.02%), Postives = 26/41 (63.41%), Query Frame = -3 Query: 123 VVCFENNLLPFVKDTESGKLLHFENLKQYRDETNATIDTNY 245 V FE L F+ D E+G+LLHFE L +++D+ + I ++ Sbjct: 319 VFAFEKRLELFIADIETGRLLHFEKLSKFKDQASHLISCSH 359 HSP 3 Score: 23.8682 bits (50), Expect = 4.672e-35 Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = -1 Query: 269 DITKKLNELNVKLKGNG 319 D+T LN LNVK++G G Sbjct: 293 DMTGHLNHLNVKMQGVG 309
BLAST of SMED30002123 vs. Planmine SMEST
Match: SMESG000011945.1 (SMESG000011945.1) HSP 1 Score: 177.948 bits (450), Expect = 9.716e-51 Identity = 116/291 (39.86%), Postives = 167/291 (57.39%), Query Frame = -2 Query: 322 NDANLTSLTISVQITKRGK*FIDCEYFKDCFISRAEELFSNFKNKKSNI--------CHYMLK*YKIEL*HNTT*H-V*LIRXXXXXXXAMDESCNIEDTYTL-LFSLGICRLKAQKKN*ESAALKANSWRR*HKRCAKMRGRL*NPYYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 1164 ++ N++ +S +I+KR K + D EY K CFI+ +EELF +FKNK N+ +K I++ N T + ++L S LS A+D+SC+I+DT + LF+ G E A + + P E+VSI+TDGAKSM G+ KG I+ + +NH IF +HCI +QE LC Q FP EI +VM LVI IINSI+ L QLKE L E+ES+Y + LLHNK+QWLSR N L+R S L +I+ F EK + EL +++ ++ +F+ Sbjct: 5 SNVNISGFVVSQEISKRKKPYTDKEYIKSCFINASEELFRDFKNKADNLKKIKELSLSAKTMKDRTIKMCSNITIQQIEDLKLVSGLSTAVDKSCDIKDTMQVSLFTRG-----------EDIA----------SSVVECMDKYDIPLDEIVSISTDGAKSMIGVSKGFVAILKEKINHEIFVYHCIFNQETLCAQTFPEEICKVMRLVITIINSIVAKALNHRQLKECLVEMESEYADPLLHNKIQWLSRGNALKRLASLLQEIEVFLLEKGVHYPELTDNQRIQNFHFV 274
BLAST of SMED30002123 vs. Planmine SMEST
Match: SMESG000011571.1 (SMESG000011571.1) HSP 1 Score: 145.591 bits (366), Expect = 1.626e-40 Identity = 76/145 (52.41%), Postives = 101/145 (69.66%), Query Frame = -2 Query: 322 PYYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 756 P ++VSI+TD AKSM+G K I+ + +NH IF +HCIIHQE LC Q FP EI +VM L+I IINSI+ L Q KEFL E+ES+Y NLLLHNKV+WLSR NVL+ F+S L +I+ F EK + EL ++W++ +F+ Sbjct: 7 PLDKIVSISTDVAKSMSGFRKWFVAILKERINHEIFAYHCIIHQEALCEQTFPEEISKVMRLMITIINSIVVKGLNHRQFKEFLVEMESEYANLLLHNKVRWLSRRNVLKLFSSLLPEIEVFLLEKGVHYPELTNNQWIQYCHFV 151
BLAST of SMED30002123 vs. Planmine SMEST
Match: SMESG000011470.1 (SMESG000011470.1) HSP 1 Score: 81.2629 bits (199), Expect = 2.389e-17 Identity = 49/130 (37.69%), Postives = 74/130 (56.92%), Query Frame = -2 Query: 352 SIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTN-TLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKE 738 +++TD A ++ G G+ + + + H I KFHCII+QE +C + +++ +VM+ V KI+N + +L Q + L ++ES Y + LH KV WLS S VLE F C IK F EK ELK+ Sbjct: 71 AVSTDCAPAIVGRLNGLNNLFEEKIVHPILKFHCIIYQENICAKISKIDVNKVMSTVSKIVNIFMACFSLTKRQFEALLQDMESTYQYISLHCKVIWLSCSKVLEMFVGCFDSIKVFLEEKCERFPELKD 200
BLAST of SMED30002123 vs. Planmine SMEST
Match: SMESG000037770.1 (SMESG000037770.1) HSP 1 Score: 72.4034 bits (176), Expect = 5.181e-15 Identity = 90/294 (30.61%), Postives = 138/294 (46.94%), Query Frame = -2 Query: 325 ANLTSLTISVQITKRGK*FIDCEYFKDCFISRAEELFSNFKNKKSNIC---HYMLK*YKIEL*HNTT*HV*L--IRXXXXXXXAMDESCNIEDTYTLL-FSLGIC-RLKAQKKN*ESAALK-ANSWRR*HKRCAKMRGRL*NPYYEMVSIATDGAKSMTGIHKGITMII---LQNL--NHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIV---RHELKEDKWLKKLNF 1158 A SL I+ +I K K F + E+ KDC + A+ + K K NI +++ +IE L I+ S+A+DES +I+DT LL F GI + A ++ LK + + K + P ++ S+ TDGA S+TG + G+ I ++NL +H I HCIIHQE LC V++ N++LT LQ K FL ++ES + ++L H V+WLS VL+R + +I F K I ++K +WL +F Sbjct: 618 ATKASLVIAHKIVKHNKPFSEGEFVKDCVLEIADIICPENKKKFENISLSRRTVVR--RIESIAEDLSDQLLNKIKTFQWFSIALDESTDIQDTAQLLIFIRGIDDKFIATEELLSMEHLKDTTTGQDLFDNLIKALDKFELPLDKLASVTTDGAPSLTGKNVGLITKIKDHVKNLHPDHTIIPLHCIIHQESLCKS--------VLDF-----NTLLT----LLQFKSFLEDLESDHSDVLYHTNVRWLSLGKVLKRVWNLKDEIVLFLEMKDITVEFTTQMKTSEWLSDFSF 892 HSP 2 Score: 27.7202 bits (60), Expect = 5.181e-15 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -1 Query: 269 DITKKLNELNVKLKGNG 319 DI KLNELNVKL+G G Sbjct: 895 DILDKLNELNVKLQGKG 911
BLAST of SMED30002123 vs. Planmine SMEST
Match: SMESG000025120.1 (SMESG000025120.1) HSP 1 Score: 76.6406 bits (187), Expect = 1.788e-14 Identity = 51/145 (35.17%), Postives = 76/145 (52.41%), Query Frame = -2 Query: 322 PYYEMVSIATDGAKSMTGIHKGITMIILQNLNHRIFKFHCIIHQELLCVQKFPVEIVEVMNLVIKIINSILTNTLFCLQLKEFL*EIESQYFNLLLHNKVQWLSRSNVLERFNSCLSKIKTFFNEKTIVRHELKEDKWLKKLNFI 756 P +++ +I TDGA +M G K + + + +NH I+HQE LC + P E + +V KIINSI L K L + E + +L+LH +V WLS+ +L RF S + +IKTF N+ EL + L L F+ Sbjct: 370 PLHKLFAITTDGAPAMVGKKKDL-LTSARRMNH-FQTLRPIMHQEALCCKILPFE--HDIKIVTKIINSIRAAPLQHRLFKTLLEDTEDKEHDLILHTEVSWLSKGKILTRFVSLIEEIKTFINDIKENYDELADSHRLIDLRFL 510 The following BLAST results are available for this feature:
BLAST of SMED30002123 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of SMED30002123 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30002123 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30002123 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of SMED30002123 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 3
BLAST of SMED30002123 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of SMED30002123 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30002123 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30002123 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of SMED30002123 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30002123 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30002123 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30002123 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of SMED30002123 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30002123 ID=SMED30002123|Name=SMED30002123|organism=Schmidtea mediterranea sexual|type=transcript|length=1732bpback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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