Intermediate filament protein
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Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30002072 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 11
Homology
BLAST of Intermediate filament protein vs. Ensembl Human
Match: LMNA (lamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]) HSP 1 Score: 135.961 bits (341), Expect = 9.076e-33 Identity = 151/580 (26.03%), Postives = 265/580 (45.69%), Query Frame = 1
Query: 598 RGDSVALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEI-----------GDL---QKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELA------TVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDN--VETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEID-----DASWGVGNNVVTTLCDSEGAEKA 2256
R + A T L+ + R QEK+DLQELN+R A YI++ R LE +N L I E + ++ S +K YE E+ R L+ K RA L+++++ + E GDL Q RL LE + A + E T EGE+ +L + + + L + + ++ + E L + E+ LQ+++E ++F+K I++ E++E V N + ++S + AL++++ ++E+++ K+ELE +Y ++ R S R++ V H + + SRI+ I S+ ++++ L+ Q A E L ++ + + + L + ++ + + L E Q LLD KL L++EI AY KLLE EE R+ S + S+ + + SS G G E+T+ +S + RT+ G +++ E D G + L N + +S+ IKR +G + +++ K L AG+ +++ A G G D +WG GN++ T L +S G E A
Sbjct: 11 RSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDL--------------RGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQRE---FESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIR--IDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQTQGGGSVTKKRKL----------------------------ESTESRSSFSQHARTS-GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKR-QNGDDPLLTYRFPPKFTLKAGQVVTIWAAG--AGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539
BLAST of Intermediate filament protein vs. Ensembl Human
Match: LMNA (lamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]) HSP 1 Score: 136.732 bits (343), Expect = 9.381e-33 Identity = 151/580 (26.03%), Postives = 265/580 (45.69%), Query Frame = 1
Query: 598 RGDSVALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEI-----------GDL---QKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELA------TVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDN--VETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEID-----DASWGVGNNVVTTLCDSEGAEKA 2256
R + A T L+ + R QEK+DLQELN+R A YI++ R LE +N L I E + ++ S +K YE E+ R L+ K RA L+++++ + E GDL Q RL LE + A + E T EGE+ +L + + + L + + ++ + E L + E+ LQ+++E ++F+K I++ E++E V N + ++S + AL++++ ++E+++ K+ELE +Y ++ R S R++ V H + + SRI+ I S+ ++++ L+ Q A E L ++ + + + L + ++ + + L E Q LLD KL L++EI AY KLLE EE R+ S + S+ + + SS G G E+T+ +S + RT+ G +++ E D G + L N + +S+ IKR +G + +++ K L AG+ +++ A G G D +WG GN++ T L +S G E A
Sbjct: 11 RSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDL--------------RGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQRE---FESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIR--IDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQTQGGGSVTKKRKL----------------------------ESTESRSSFSQHARTS-GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKR-QNGDDPLLTYRFPPKFTLKAGQVVTIWAAG--AGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539
BLAST of Intermediate filament protein vs. Ensembl Human
Match: LMNA (lamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]) HSP 1 Score: 135.961 bits (341), Expect = 1.247e-32 Identity = 151/580 (26.03%), Postives = 265/580 (45.69%), Query Frame = 1
Query: 598 RGDSVALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEI-----------GDL---QKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELA------TVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDN--VETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEID-----DASWGVGNNVVTTLCDSEGAEKA 2256
R + A T L+ + R QEK+DLQELN+R A YI++ R LE +N L I E + ++ S +K YE E+ R L+ K RA L+++++ + E GDL Q RL LE + A + E T EGE+ +L + + + L + + ++ + E L + E+ LQ+++E ++F+K I++ E++E V N + ++S + AL++++ ++E+++ K+ELE +Y ++ R S R++ V H + + SRI+ I S+ ++++ L+ Q A E L ++ + + + L + ++ + + L E Q LLD KL L++EI AY KLLE EE R+ S + S+ + + SS G G E+T+ +S + RT+ G +++ E D G + L N + +S+ IKR +G + +++ K L AG+ +++ A G G D +WG GN++ T L +S G E A
Sbjct: 11 RSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDL--------------RGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQRE---FESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIR--IDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQTQGGGSVTKKRKL----------------------------ESTESRSSFSQHARTS-GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKR-QNGDDPLLTYRFPPKFTLKAGQVVTIWAAG--AGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539
BLAST of Intermediate filament protein vs. Ensembl Human
Match: LMNA (lamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]) HSP 1 Score: 135.191 bits (339), Expect = 2.658e-32 Identity = 149/576 (25.87%), Postives = 263/576 (45.66%), Query Frame = 1
Query: 598 RGDSVALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEI-----------GDL---QKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELA------TVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDN--VETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEID-----DASWGVGNNVVTTLCDSEG 2244
R + A T L+ + R QEK+DLQELN+R A YI++ R LE +N L I E + ++ S +K YE E+ R L+ K RA L+++++ + E GDL Q RL LE + A + E T EGE+ +L + + + L + + ++ + E L + E+ LQ+++E ++F+K I++ E++E V N + ++S + AL++++ ++E+++ K+ELE +Y ++ R S R++ V H + + SRI+ I S+ ++++ L+ Q A E L ++ + + + L + ++ + + L E Q LLD KL L++EI AY KLLE EE R+ S + S+ + + SS G G E+T+ +S + RT+ G +++ E D G + L N + +S+ IKR +G + +++ K L AG+ +++ A G G D +WG GN++ T L +S G
Sbjct: 11 RSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDL--------------RGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQRE---FESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIR--IDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLSPSPTSQRSRGRASSHSSQTQGGGSVTKKRKL----------------------------ESTESRSSFSQHARTS-GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKR-QNGDDPLLTYRFPPKFTLKAGQVVTIWAAG--AGATHSPPTDLVWKAQNTWGCGNSLRTALINSTG 535
BLAST of Intermediate filament protein vs. Ensembl Human
Match: VIM (vimentin [Source:HGNC Symbol;Acc:HGNC:12692]) HSP 1 Score: 131.724 bits (330), Expect = 3.605e-32 Identity = 121/412 (29.37%), Postives = 213/412 (51.70%), Query Frame = 1
Query: 547 YSMQSGNQQSGSVMPLIR--GDSV--ALQTGLNS-IKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRI-------ADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRV-----NFSG 1731
Y+ +S + S +P +R DSV +L +N+ K R EK +LQELN+RFA+YI+K RFLE+QNK L+ E+E+LKG Q S++ ++YE E+ +LR +++ +A +E++ ++L +I L+++L + EM++ + ++T ++ RQ+ + +LA + LE ++SL+E + F K++H E++EL + + ++ + ++ ALRD++ +YE+ QE E Y + ++ + R+N K+E++ + Q+QS+ + LE Q E E N ANY++T + LQ+++ ++E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ NFS
Sbjct: 61 YATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKG---QGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL------------------------QEEMLQREEAENT------------------LQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDT-------IGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSS 420
BLAST of Intermediate filament protein vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 229.95 bits (585), Expect = 4.471e-66 Identity = 171/556 (30.76%), Postives = 288/556 (51.80%), Query Frame = 1
Query: 619 QTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIG-TKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDA--SWGVGNNVVTTLCDSEGAEKAAHYQEVS 2277
Q ++I+ R +EKK++ +LN+R ASYIEK RFLE QN++L +++ L+ +DT ++ +YE E+ + L++E+ K R +E Q+ ++ E+ +++++L Q RA ID L E E+ LKR + + K E L E+++ R + ++E L I ++ +Q+L E ++F +++H E+KEL T+A ++ T EN ++++E+ A+RDI+ EY+ + ++E+ Y L++QEI+T R N+E + KEE R+++Q+ +R ++ADLE +N+ E + + E+ QRS E L Q+ ++E + ELQ LLD K L+ EIA Y K+LE EE+R A L Q + + + + ET QS F+R+ KGN+SI E G I+L+N K E++ +KR +DG + +T+ L AG+ + + A+ + + + DA S+G GNNV T L + EG E+A H Q S
Sbjct: 48 QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENR--------AGLKQLVE-------------------------QVVKTHAITQETDTETMRVVKGETASRQS----FQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRAGKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQRQS 565
BLAST of Intermediate filament protein vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 229.95 bits (585), Expect = 4.471e-66 Identity = 171/556 (30.76%), Postives = 288/556 (51.80%), Query Frame = 1
Query: 619 QTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIG-TKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDA--SWGVGNNVVTTLCDSEGAEKAAHYQEVS 2277
Q ++I+ R +EKK++ +LN+R ASYIEK RFLE QN++L +++ L+ +DT ++ +YE E+ + L++E+ K R +E Q+ ++ E+ +++++L Q RA ID L E E+ LKR + + K E L E+++ R + ++E L I ++ +Q+L E ++F +++H E+KEL T+A ++ T EN ++++E+ A+RDI+ EY+ + ++E+ Y L++QEI+T R N+E + KEE R+++Q+ +R ++ADLE +N+ E + + E+ QRS E L Q+ ++E + ELQ LLD K L+ EIA Y K+LE EE+R A L Q + + + + ET QS F+R+ KGN+SI E G I+L+N K E++ +KR +DG + +T+ L AG+ + + A+ + + + DA S+G GNNV T L + EG E+A H Q S
Sbjct: 48 QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENR--------AGLKQLVE-------------------------QVVKTHAITQETDTETMRVVKGETASRQS----FQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRAGKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQRQS 565
BLAST of Intermediate filament protein vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 229.95 bits (585), Expect = 4.471e-66 Identity = 171/556 (30.76%), Postives = 288/556 (51.80%), Query Frame = 1
Query: 619 QTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIG-TKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDA--SWGVGNNVVTTLCDSEGAEKAAHYQEVS 2277
Q ++I+ R +EKK++ +LN+R ASYIEK RFLE QN++L +++ L+ +DT ++ +YE E+ + L++E+ K R +E Q+ ++ E+ +++++L Q RA ID L E E+ LKR + + K E L E+++ R + ++E L I ++ +Q+L E ++F +++H E+KEL T+A ++ T EN ++++E+ A+RDI+ EY+ + ++E+ Y L++QEI+T R N+E + KEE R+++Q+ +R ++ADLE +N+ E + + E+ QRS E L Q+ ++E + ELQ LLD K L+ EIA Y K+LE EE+R A L Q + + + + ET QS F+R+ KGN+SI E G I+L+N K E++ +KR +DG + +T+ L AG+ + + A+ + + + DA S+G GNNV T L + EG E+A H Q S
Sbjct: 48 QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENR--------AGLKQLVE-------------------------QVVKTHAITQETDTETMRVVKGETASRQS----FQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRAGKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQRQS 565
BLAST of Intermediate filament protein vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 229.95 bits (585), Expect = 4.897e-66 Identity = 171/556 (30.76%), Postives = 288/556 (51.80%), Query Frame = 1
Query: 619 QTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIG-TKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDA--SWGVGNNVVTTLCDSEGAEKAAHYQEVS 2277
Q ++I+ R +EKK++ +LN+R ASYIEK RFLE QN++L +++ L+ +DT ++ +YE E+ + L++E+ K R +E Q+ ++ E+ +++++L Q RA ID L E E+ LKR + + K E L E+++ R + ++E L I ++ +Q+L E ++F +++H E+KEL T+A ++ T EN ++++E+ A+RDI+ EY+ + ++E+ Y L++QEI+T R N+E + KEE R+++Q+ +R ++ADLE +N+ E + + E+ QRS E L Q+ ++E + ELQ LLD K L+ EIA Y K+LE EE+R A L Q + + + + ET QS F+R+ KGN+SI E G I+L+N K E++ +KR +DG + +T+ L AG+ + + A+ + + + DA S+G GNNV T L + EG E+A H Q S
Sbjct: 56 QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENR--------AGLKQLVE-------------------------QVVKTHAITQETDTETMRVVKGETASRQS----FQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRAGKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQRQS 573
BLAST of Intermediate filament protein vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 230.335 bits (586), Expect = 6.657e-66 Identity = 171/556 (30.76%), Postives = 288/556 (51.80%), Query Frame = 1
Query: 619 QTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIG-TKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDA--SWGVGNNVVTTLCDSEGAEKAAHYQEVS 2277
Q ++I+ R +EKK++ +LN+R ASYIEK RFLE QN++L +++ L+ +DT ++ +YE E+ + L++E+ K R +E Q+ ++ E+ +++++L Q RA ID L E E+ LKR + + K E L E+++ R + ++E L I ++ +Q+L E ++F +++H E+KEL T+A ++ T EN ++++E+ A+RDI+ EY+ + ++E+ Y L++QEI+T R N+E + KEE R+++Q+ +R ++ADLE +N+ E + + E+ QRS E L Q+ ++E + ELQ LLD K L+ EIA Y K+LE EE+R A L Q + + + + ET QS F+R+ KGN+SI E G I+L+N K E++ +KR +DG + +T+ L AG+ + + A+ + + + DA S+G GNNV T L + EG E+A H Q S
Sbjct: 73 QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENR--------AGLKQLVE-------------------------QVVKTHAITQETDTETMRVVKGETASRQS----FQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRAGKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQRQS 590
BLAST of Intermediate filament protein vs. Ensembl Fly
Match: LamC (gene:FBgn0010397 transcript:FBtr0087512) HSP 1 Score: 134.806 bits (338), Expect = 1.296e-32 Identity = 154/578 (26.64%), Postives = 259/578 (44.81%), Query Frame = 1
Query: 595 IRGDSVALQTGLNS----IKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELET--------FEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELAT---VAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVA-LTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA 2280
+ G S + + G S + R QEK++LQ LN+R A YI++ R LE +N +L E+ + ++TS +K +YE E+ R LL+E+ K +A LEI + L E DL+ RL D T+ + R E + + + K+F+D A + E LR ++ LR+ E E LA + LE+ QSLRE + F+ Q+H E+ E + + +++++ ++L++++ +YE ++ ++E+E Y ++Q ++ + R + EE ++++I + +++ +LE NA + + N +T+R Q + E ++ L E Q L+D K+ L+LEIAAY KLL EE R+N G T +S S A G G + G S + +E T S KG++ I E D+ G I L N GT+ +L G + R+ E F+ KV A I G + + W V N++ + L +++ E A Y V A
Sbjct: 21 VGGASTSSRVGATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRL----DKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFED----QAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELE-NLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRPTTDSGISSNGSHLTASASSRSGRVTPSGRRSATPGISGSSAVKRRRTVIDESEDRTLSEYS----VNAAAKGDLEIIEADVEGRFIKLHNKGTEEINLTGWQLTRIAGDEELAFKFSRGSKVLGGASVTIWSVDAGTAHDPPNNL-VMKKKWPVANSMRSVLANAD-KEDVASYDRVRA 583
BLAST of Intermediate filament protein vs. Ensembl Fly
Match: Lam (gene:FBgn0002525 transcript:FBtr0346460) HSP 1 Score: 131.724 bits (330), Expect = 1.581e-31 Identity = 140/571 (24.52%), Postives = 264/571 (46.23%), Query Frame = 1
Query: 622 TGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRS---------IDATKEK---------DETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKE---LATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVD--GSENKISFTISGKVNLN-------AGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEG 2244
+ L+ + R EK +LQ LN+R A+YI++ R LE +N +L E++ + ++T+ +K I+E E+ + R LL+++ + RA EI + L E +L+ +L DK+ +E T EG + R ++R+ +A ++K E LR + ++ R+N E+E L+ + LE+ +QSLRE + F+ QIH+ E+ E + Y + +++ ++L++++ +YE ++ + E+++ Y ++Q ++ + R + T EE + +I ++ + I +LE NA+ + ++ + + ++ L+++L ++E+T L E Q L+D K+ L+LEIAAY KLL EE+R+N + N Q SF+ S + + E+ D+ + KGN+ I E D G + L N G++ ++ G ++R+++ G F S ++ N A K S + K ++ W +N T L +SEG
Sbjct: 42 SPLSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKL--------------DKKTKECTTAEGNV----RMYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQ--SFSQSLRNSTRATPSRRTPSAAVKRKRAVVD-----------------ESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQK-------WVSADNTRTILLNSEG 568
BLAST of Intermediate filament protein vs. Ensembl Fly
Match: Lam (gene:FBgn0002525 transcript:FBtr0307059) HSP 1 Score: 131.724 bits (330), Expect = 1.581e-31 Identity = 140/571 (24.52%), Postives = 264/571 (46.23%), Query Frame = 1
Query: 622 TGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRS---------IDATKEK---------DETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKE---LATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVD--GSENKISFTISGKVNLN-------AGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEG 2244
+ L+ + R EK +LQ LN+R A+YI++ R LE +N +L E++ + ++T+ +K I+E E+ + R LL+++ + RA EI + L E +L+ +L DK+ +E T EG + R ++R+ +A ++K E LR + ++ R+N E+E L+ + LE+ +QSLRE + F+ QIH+ E+ E + Y + +++ ++L++++ +YE ++ + E+++ Y ++Q ++ + R + T EE + +I ++ + I +LE NA+ + ++ + + ++ L+++L ++E+T L E Q L+D K+ L+LEIAAY KLL EE+R+N + N Q SF+ S + + E+ D+ + KGN+ I E D G + L N G++ ++ G ++R+++ G F S ++ N A K S + K ++ W +N T L +SEG
Sbjct: 42 SPLSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKL--------------DKKTKECTTAEGNV----RMYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQ--SFSQSLRNSTRATPSRRTPSAAVKRKRAVVD-----------------ESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQK-------WVSADNTRTILLNSEG 568
BLAST of Intermediate filament protein vs. Ensembl Fly
Match: Lam (gene:FBgn0002525 transcript:FBtr0307058) HSP 1 Score: 131.724 bits (330), Expect = 1.581e-31 Identity = 140/571 (24.52%), Postives = 264/571 (46.23%), Query Frame = 1
Query: 622 TGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRS---------IDATKEK---------DETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKE---LATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVD--GSENKISFTISGKVNLN-------AGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEG 2244
+ L+ + R EK +LQ LN+R A+YI++ R LE +N +L E++ + ++T+ +K I+E E+ + R LL+++ + RA EI + L E +L+ +L DK+ +E T EG + R ++R+ +A ++K E LR + ++ R+N E+E L+ + LE+ +QSLRE + F+ QIH+ E+ E + Y + +++ ++L++++ +YE ++ + E+++ Y ++Q ++ + R + T EE + +I ++ + I +LE NA+ + ++ + + ++ L+++L ++E+T L E Q L+D K+ L+LEIAAY KLL EE+R+N + N Q SF+ S + + E+ D+ + KGN+ I E D G + L N G++ ++ G ++R+++ G F S ++ N A K S + K ++ W +N T L +SEG
Sbjct: 42 SPLSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKL--------------DKKTKECTTAEGNV----RMYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQ--SFSQSLRNSTRATPSRRTPSAAVKRKRAVVD-----------------ESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQK-------WVSADNTRTILLNSEG 568
BLAST of Intermediate filament protein vs. Ensembl Fly
Match: Lam (gene:FBgn0002525 transcript:FBtr0079100) HSP 1 Score: 131.724 bits (330), Expect = 1.581e-31 Identity = 140/571 (24.52%), Postives = 264/571 (46.23%), Query Frame = 1
Query: 622 TGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRS---------IDATKEK---------DETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKE---LATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVD--GSENKISFTISGKVNLN-------AGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEG 2244
+ L+ + R EK +LQ LN+R A+YI++ R LE +N +L E++ + ++T+ +K I+E E+ + R LL+++ + RA EI + L E +L+ +L DK+ +E T EG + R ++R+ +A ++K E LR + ++ R+N E+E L+ + LE+ +QSLRE + F+ QIH+ E+ E + Y + +++ ++L++++ +YE ++ + E+++ Y ++Q ++ + R + T EE + +I ++ + I +LE NA+ + ++ + + ++ L+++L ++E+T L E Q L+D K+ L+LEIAAY KLL EE+R+N + N Q SF+ S + + E+ D+ + KGN+ I E D G + L N G++ ++ G ++R+++ G F S ++ N A K S + K ++ W +N T L +SEG
Sbjct: 42 SPLSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKL--------------DKKTKECTTAEGNV----RMYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQ--SFSQSLRNSTRATPSRRTPSAAVKRKRAVVD-----------------ESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQK-------WVSADNTRTILLNSEG 568
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Match: viml (vimentin like [Source:ZFIN;Acc:ZDB-GENE-040426-1743]) HSP 1 Score: 132.88 bits (333), Expect = 1.140e-32 Identity = 121/412 (29.37%), Postives = 203/412 (49.27%), Query Frame = 1
Query: 547 YSMQSGNQQSGSVMPLIRGDSVA--LQTGLNS-IKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLN--ESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSF 1767
Y+ +S +S + MP + +++ L LN+ K R EK +Q LN+RFASYIEK RFLE+QNK L E+E+L+G Q +S++ ++YE E+ LR ++ +EK+RA E+ ++L ++ L+++L + EM++ +E E S +K RQ+ + ALA + LE ++SL++ + F K +H E+ EL T + M + ++ ALRD++ +YEN + QE E Y + ++ + R+N K+E + + Q+Q++ + L N E + + N+ + + L+E + + E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ A L F SF
Sbjct: 44 YASKSAKVRSSAAMPRLTSETLDFNLSDALNTEFKANRLNEKAQMQSLNDRFASYIEKVRFLEQQNKILSAELEQLRG---QRSSRIADLYEEEMRDLRRQVDLLTTEKTRA--EVMRDNLAEDVERLKEKL------------------------QDEMLQ-------------REDAENS-----MKSFRQDVDNAALARVDLERKVESLQDELAFLKNLHDEELAELQTQIQGQQVQVEMDMAKPDLTAALRDVRLQYENLASKNIQESEDWYKSKFADLTEAANRNNEALRLAKQETNEYRRQVQAITCELDALRGTNESLERQMREMEENFSMESSGFQNTIGRLEEDIGNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI------AAPLPNFSSF 402
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Match: vim (vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]) HSP 1 Score: 124.79 bits (312), Expect = 6.681e-30 Identity = 110/409 (26.89%), Postives = 206/409 (50.37%), Query Frame = 1
Query: 529 NAASLSYSMQSGNQQSGSVMPLIRGDSV--ALQTGLNS-IKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRV-----NFSG 1731
+A Y+ +S +SG+ +P + D++ L +N+ K R EK ++Q LN+RFASYI+K RFLE+QNK L+ E+E+L+G + S+V ++YE E+ +LR +++ ++ +E+ ++L +I L++RL + EM++ +E E S ++ RQ+ + +LA + LE ++SL+E + F K++H E+ E+ + + +M + ++ AL+D++ +YE + QE E Y + ++ + R+N K+E + + Q+Q++ + L+ N E + + ++ + + L++ + + E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ NFS
Sbjct: 48 SAPPSVYASKSLRVRSGAPLPRLATDTLDFGLAEAINTEFKANRTNEKAEMQHLNDRFASYIDKVRFLEQQNKILIAELEQLRG---KGASRVGDLYEDEMRELRRQVDQLTGEKSKVEVDRDNLGEDIERLKERL------------------------QEEMLQ-------------REDAENS-----LRSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEELAEMQIQMQEQHLQIDMEVAKPDLTAALKDVRQQYETLASRNLQESEDWYKSKFADLSEAAARNNETIRLAKQEANDYRRQLQALTCDLEALKGTNESLERQMRELEDSFSMEASGYQDTIGRLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITSPFPNFSS 411
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Match: desma (desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]) HSP 1 Score: 118.242 bits (295), Expect = 1.333e-27 Identity = 114/381 (29.92%), Postives = 183/381 (48.03%), Query Frame = 1
Query: 649 RAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQK-RLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGR-----ALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQN-------AEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLS 1752
R EK +LQ LN+RFASYIEK RFLE+QN L EIE L+G ++ +++ E+YE E+ +LR + R+ +EI+ ++L + DLQK +L L E+I +K+E N + R + + LA + LE ++ L E + F ++IH E++EL QN +E+ V Q +M + ALRDI+ +YE E E Y ++ ++ + ++N K+E + + Q+QS I L+ N +E E L Y++T + L+ ++ + E+ L E Q LL+ K+ L++EIA Y KLLE EESR++ ++LS
Sbjct: 99 RTNEKAELQHLNDRFASYIEKVRFLEQQNSALTVEIERLRG---REPTRIAELYEEEMRELRRQVEALTNQRSRVEIERDNL---VDDLQKLKLRLQEEI-------------------------------------HQKEEAEN---NLSAFRADVDAATLARLDLERRIEGLHEEIAFLRKIHEEEIREL-----QNQMQESQVQIQMDMSKPDLTAALRDIRLQYEAIAAKNISEAEDWYKSKVSDLNQAVNKNNEALREAKQETMQFRHQLQSYTCEIDSLKGTNESLRRQMSEMEERLGREAGGYQDT-------IARLEAEIAKMKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRISLPVQSFSSLS 421
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Match: desma (desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]) HSP 1 Score: 118.242 bits (295), Expect = 1.378e-27 Identity = 114/381 (29.92%), Postives = 183/381 (48.03%), Query Frame = 1
Query: 649 RAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQK-RLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGR-----ALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQN-------AEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLS 1752
R EK +LQ LN+RFASYIEK RFLE+QN L EIE L+G ++ +++ E+YE E+ +LR + R+ +EI+ ++L + DLQK +L L E+I +K+E N + R + + LA + LE ++ L E + F ++IH E++EL QN +E+ V Q +M + ALRDI+ +YE E E Y ++ ++ + ++N K+E + + Q+QS I L+ N +E E L Y++T + L+ ++ + E+ L E Q LL+ K+ L++EIA Y KLLE EESR++ ++LS
Sbjct: 99 RTNEKAELQHLNDRFASYIEKVRFLEQQNSALTVEIERLRG---REPTRIAELYEEEMRELRRQVEALTNQRSRVEIERDNL---VDDLQKLKLRLQEEI-------------------------------------HQKEEAEN---NLSAFRADVDAATLARLDLERRIEGLHEEIAFLRKIHEEEIREL-----QNQMQESQVQIQMDMSKPDLTAALRDIRLQYEAIAAKNISEAEDWYKSKVSDLNQAVNKNNEALREAKQETMQFRHQLQSYTCEIDSLKGTNESLRRQMSEMEERLGREAGGYQDT-------IARLEAEIAKMKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRISLPVQSFSSLS 421
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Match: gfap (glial fibrillary acidic protein [Source:NCBI gene;Acc:30646]) HSP 1 Score: 114.39 bits (285), Expect = 1.967e-26 Identity = 99/364 (27.20%), Postives = 179/364 (49.18%), Query Frame = 1
Query: 640 KKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDE----IKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRV 1719
++ R EK ++ LN+RFASYIEK RFLE+QNK LV E+ +L+G ++ S++ +IY+ E+ +LR ++ +A LEI+ ++L ++G L++RL +DET+ LR E + RQ+ ++ AL + LE +++L++ + F K++H E++EL ++ + ++ AL++I+ ++E QE E Y + ++ + R+ K+E + + QIQ + + L N E L + + + + + L++++ ++E+ L E Q LL+ KL L++EIA Y KLLE EESR+
Sbjct: 75 RETRTNEKVEMMGLNDRFASYIEKVRFLEQQNKMLVAELNQLRG---KEPSRLGDIYQEELRELRRQVDGLNAGKARLEIERDNLASDLGTLKQRL---------------------------------------------QDETA-LRQEAENNLNTFRQDVDEAALNRVQLERKIEALQDEINFLKKVHEEEMRELHEQLMAQQVHVDLDVSKPDLTAALKEIRAQFEAMANSNMQETEEWYRSKFADLTDAANRNGEALRQAKQEANDYRRQIQGLTCDLESLRGSNESLERQLREMEERFAIETAAYQDTVARLEDEIQMLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEESRI 389
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Match: timm13 (translocase of inner mitochondrial membrane 13 homolog [Source:NCBI gene;Acc:734099]) HSP 1 Score: 134.806 bits (338), Expect = 1.882e-32 Identity = 152/589 (25.81%), Postives = 279/589 (47.37%), Query Frame = 1
Query: 574 SGSVMPLIRGDSVALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLE-DIGT------QYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKK-------LRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPT---KENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQ-NA------EYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISL-CAKGKITGKGREIEI--DDASWGVGNNVVTTLCDSEGAEKAA 2259
+ S+ RG S T L+ + R QEK++L+ LN+R A YI++ R LE +N +L+ +I E + T ++ S +K +YE E+ R +L+E+ + RA L+I++ ++ +L K + D+ T A + EL T GE RS++A E ++LR ++ K ++ EKE L + E+ +QSL+E M+F K I+ E +E + + + + S++ +AL +++ +++ ++ K+ELE +Y ++ I+ S ++ +EE + + +I+++ +++ L+ Q NA E E L++ R Y + S E ++ +++Q+ LTE Q LLD KL L++EI AY KLLE EE R+ S + ++ + S+ + ++R+ T + + + + G+ISI E DL G + L+N K +SL +KR + G E +I + + K L AG+ + + A + I + + ++WG G+N+ T L ++E E A
Sbjct: 11 TSSMQSPARGTS----TPLSPTRISRLQEKEELRHLNDRLAVYIDRVRSLELENDRLMVKISEKEEVTTREVSGIKNLYESELADARKVLDETARERARLQIELGKFRSDLDELTKNYKKKDADLSTAQGRIRDLEALFHRSEAELGTALGE---------KRSLEA-----EVADLRAQLSKAEDAHAVAKKQLEKETLMRVDFENRIQSLQEEMDFRKNIYEEESRETRKRHERRIVEVDRGHQCDYDSKLAQALDELRKQHDEQVKMYKEELEQTYQAKLDNIKRSSDHNDKAANTAREELTEARMRIETLSYQLSGLQKQANAAEDRIRELEQLLSSDRDKYRKLLDSKEKEMAEMRDQMQQQ-------LTEYQELLDVKLALDMEINAYRKLLEGEEERLKLSPSPQSRVT--------------------------------VSRATSSSSSATRTSRSKRKRTGFTRFHLSQQASATGSISIEEIDLEGKYVHLKNNSDKDQSLGNWRLKRKI-GEEEEIVYKFTPKYVLKAGQSVKIYSADAGVAHSPPSILVWKNQSTWGTGSNIRTYLVNTEEEEVAV 541
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Match: vim (vimentin [Source:NCBI gene;Acc:496727]) HSP 1 Score: 131.339 bits (329), Expect = 6.927e-32 Identity = 108/371 (29.11%), Postives = 193/371 (52.02%), Query Frame = 1
Query: 640 KKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLS 1752
K R EK ++QELN+RFA++I+K RFLE+QNK LV E+E+LKG + TS++ ++YE E+ +LR L++ ++ +E+ ++L DLQ R E + EM++ KE+ E + ++ RQ+ + +LA I LE ++SL+E + F K++H E++EL ++ + +M + ++ ALRD++ +YEN + E Y + ++ + R+N K++ + + QIQ++ I ++ N YE + + N+ + + + LQE++ ++E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ +++S
Sbjct: 99 KANRTNEKAEMQELNDRFANFIDKVRFLEQQNKILVAELEQLKG---KGTSRIGDLYEEEMRELRRQLDQVTNAKDRVEVDRDNL---ADDLQ---------------------RLREKLQDEMIQ-------------KEEAEGN-----LQSFRQDVDNASLARIDLERKVESLQEEIVFLKKLHDEEIRELQLQIQESHIQVDMDVSKPDLTAALRDVRQQYENVAAKNLSDAEDWYKSKFADLSEAANRNNDALRQAKQDANDYRRQIQTLTCEIDAMKGSNESYERQMREMEENFAGEAANYQDTIQRLQEEIHNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITVPVHSFSSMS 424
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Match: vim (vimentin [Source:NCBI gene;Acc:496727]) HSP 1 Score: 130.954 bits (328), Expect = 7.491e-32 Identity = 108/371 (29.11%), Postives = 193/371 (52.02%), Query Frame = 1
Query: 640 KKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLS 1752
K R EK ++QELN+RFA++I+K RFLE+QNK LV E+E+LKG + TS++ ++YE E+ +LR L++ ++ +E+ ++L DLQ R E + EM++ KE+ E + ++ RQ+ + +LA I LE ++SL+E + F K++H E++EL ++ + +M + ++ ALRD++ +YEN + E Y + ++ + R+N K++ + + QIQ++ I ++ N YE + + N+ + + + LQE++ ++E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ +++S
Sbjct: 93 KANRTNEKAEMQELNDRFANFIDKVRFLEQQNKILVAELEQLKG---KGTSRIGDLYEEEMRELRRQLDQVTNAKDRVEVDRDNL---ADDLQ---------------------RLREKLQDEMIQ-------------KEEAEGN-----LQSFRQDVDNASLARIDLERKVESLQEEIVFLKKLHDEEIRELQLQIQESHIQVDMDVSKPDLTAALRDVRQQYENVAAKNLSDAEDWYKSKFADLSEAANRNNDALRQAKQDANDYRRQIQTLTCEIDAMKGSNESYERQMREMEENFAGEAANYQDTIQRLQEEIHNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITVPVHSFSSMS 418
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Match: vim (vimentin [Source:NCBI gene;Acc:496727]) HSP 1 Score: 130.954 bits (328), Expect = 8.659e-32 Identity = 108/371 (29.11%), Postives = 193/371 (52.02%), Query Frame = 1
Query: 640 KKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLS 1752
K R EK ++QELN+RFA++I+K RFLE+QNK LV E+E+LKG + TS++ ++YE E+ +LR L++ ++ +E+ ++L DLQ R E + EM++ KE+ E + ++ RQ+ + +LA I LE ++SL+E + F K++H E++EL ++ + +M + ++ ALRD++ +YEN + E Y + ++ + R+N K++ + + QIQ++ I ++ N YE + + N+ + + + LQE++ ++E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ +++S
Sbjct: 97 KANRTNEKAEMQELNDRFANFIDKVRFLEQQNKILVAELEQLKG---KGTSRIGDLYEEEMRELRRQLDQVTNAKDRVEVDRDNL---ADDLQ---------------------RLREKLQDEMIQ-------------KEEAEGN-----LQSFRQDVDNASLARIDLERKVESLQEEIVFLKKLHDEEIRELQLQIQESHIQVDMDVSKPDLTAALRDVRQQYENVAAKNLSDAEDWYKSKFADLSEAANRNNDALRQAKQDANDYRRQIQTLTCEIDAMKGSNESYERQMREMEENFAGEAANYQDTIQRLQEEIHNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITVPVHSFSSMS 422
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Match: timm13 (translocase of inner mitochondrial membrane 13 homolog [Source:NCBI gene;Acc:734099]) HSP 1 Score: 132.494 bits (332), Expect = 1.338e-31 Identity = 157/599 (26.21%), Postives = 281/599 (46.91%), Query Frame = 1
Query: 562 GNQQSG--SVMPLIRGDSVALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLE-DIGT------QYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKK-------LRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPT---KENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQ-NA------EYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGN----ISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISL-CAKGKITGKGREIEI--DDASWGVGNNVVTTLCDSEGAEKAA 2259
G +SG S+ RG S T L+ + R QEK++L+ LN+R A YI++ R LE +N +L+ +I E + T ++ S +K +YE E+ R +L+E+ + RA L+I++ ++ +L K + D+ T A + EL T GE RS++A E ++LR ++ K ++ EKE L + E+ +QSL+E M+F K I+ E +E + + + + S++ +AL +++ +++ ++ K+ELE +Y ++ I+ S ++ +EE + + +I+++ +++ L+ Q NA E E L++ R Y + S E ++ +++Q+ LTE Q LLD KL L++EI AY KLLE EE R+ S + ++ + + R+ G + R T Q +F + + + ISI E DL G + L+N K +SL +KR + G E +I + + K L AG+ + + A + I + + ++WG G+N+ T L ++E E A
Sbjct: 3 GRSRSGTSSMQSPARGTS----TPLSPTRISRLQEKEELRHLNDRLAVYIDRVRSLELENDRLMVKISEKEEVTTREVSGIKNLYESELADARKVLDETARERARLQIELGKFRSDLDELTKNYKKKDADLSTAQGRIRDLEALFHRSEAELGTALGE---------KRSLEA-----EVADLRAQLSKAEDAHAVAKKQLEKETLMRVDFENRIQSLQEEMDFRKNIYEEESRETRKRHERRIVEVDRGHQCDYDSKLAQALDELRKQHDEQVKMYKEELEQTYQAKLDNIKRSSDHNDKAANTAREELTEARMRIETLSYQLSGLQKQANAAEDRIRELEQLLSSDRDKYRKLLDSKEKEMAEMRDQMQQQ-------LTEYQELLDVKLALDMEINAYRKLLEGEEERLKLSPSPQSRVT-----------------VSRATSSSSSATRTSRSKRKRVEEEYEEGGGSSRTVTSGQGSSTRFHLSQQASATGSISIEEIDLEGKYVHLKNNSDKDQSLGNWRLKRKI-GEEEEIVYKFTPKYVLKAGQSVKIYSADAGVAHSPPSILVWKNQSTWGTGSNIRTYLVNTEEEEVAV 558
BLAST of Intermediate filament protein vs. Ensembl Mouse
Match: Vim (vimentin [Source:MGI Symbol;Acc:MGI:98932]) HSP 1 Score: 130.568 bits (327), Expect = 5.922e-32 Identity = 119/407 (29.24%), Postives = 213/407 (52.33%), Query Frame = 1
Query: 544 SYSMQSGNQQSGSVMPLIR--GDSV--ALQTGLNS-IKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRI-------ADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS 1728
+Y +S + S +P +R DSV +L +N+ K R EK +LQELN+RFA+YI+K RFLE+QNK L+ E+E+LKG Q S++ ++YE E+ +LR +++ +A +E++ ++L +I L+++L + EM++ +E+ E++ ++ RQ+ + +LA + LE ++SL+E + F K++H E++EL + + ++ + ++ ALRD++ +YE+ QE E Y + ++ + R+N K+E++ + Q+QS+ + LE Q E E N ANY++T + LQ+++ ++E+ L E Q LL+ K+ L++EIA Y KLLE EESR++
Sbjct: 60 AYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKG---QGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL------------------------QEEMLQ-------------REEAEST-----LQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFALEAANYQDT-------IGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLP 414
BLAST of Intermediate filament protein vs. Ensembl Mouse
Match: Vim (vimentin [Source:MGI Symbol;Acc:MGI:98932]) HSP 1 Score: 130.954 bits (328), Expect = 8.620e-32 Identity = 119/407 (29.24%), Postives = 213/407 (52.33%), Query Frame = 1
Query: 544 SYSMQSGNQQSGSVMPLIR--GDSV--ALQTGLNS-IKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRI-------ADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS 1728
+Y +S + S +P +R DSV +L +N+ K R EK +LQELN+RFA+YI+K RFLE+QNK L+ E+E+LKG Q S++ ++YE E+ +LR +++ +A +E++ ++L +I L+++L + EM++ +E+ E++ ++ RQ+ + +LA + LE ++SL+E + F K++H E++EL + + ++ + ++ ALRD++ +YE+ QE E Y + ++ + R+N K+E++ + Q+QS+ + LE Q E E N ANY++T + LQ+++ ++E+ L E Q LL+ K+ L++EIA Y KLLE EESR++
Sbjct: 60 AYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKG---QGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL------------------------QEEMLQ-------------REEAEST-----LQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFALEAANYQDT-------IGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLP 414
BLAST of Intermediate filament protein vs. Ensembl Mouse
Match: Gfap (glial fibrillary acidic protein [Source:MGI Symbol;Acc:MGI:95697]) HSP 1 Score: 120.553 bits (301), Expect = 1.452e-28 Identity = 110/385 (28.57%), Postives = 186/385 (48.31%), Query Frame = 1
Query: 589 PLIRGDSVALQTGLNS-IKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDE----IKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS 1728
PL +L LN+ K+ RA E+ ++ ELN+RFASYIEK RFLE+QNK L E+ +L+ ++ +K+ ++Y+ E+ +LR L++ + A LE++ ++ ++G L+++L +DET NLR E + RQ ++ LA + LE ++SL E ++F ++I+ EV+EL Q M + ++ ALR+I+T+YE T QE E Y + ++ + +R+ K E + + Q+Q++ + L N E + + S + L L+E+ ++E+ L E Q LL+ KL L++EIA Y KLLE EE+R+
Sbjct: 42 PLPARVDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRA---KEPTKLADVYQAELRELRLRLDQLTANSARLEVERDNFAQDLGTLRQKL---------------------------------------------QDET-NLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQLAQQQVHVEMDVAKPDLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAELLRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIP 377
BLAST of Intermediate filament protein vs. Ensembl Mouse
Match: Gfap (glial fibrillary acidic protein [Source:MGI Symbol;Acc:MGI:95697]) HSP 1 Score: 120.168 bits (300), Expect = 1.638e-28 Identity = 110/385 (28.57%), Postives = 186/385 (48.31%), Query Frame = 1
Query: 589 PLIRGDSVALQTGLNS-IKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDE----IKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS 1728
PL +L LN+ K+ RA E+ ++ ELN+RFASYIEK RFLE+QNK L E+ +L+ ++ +K+ ++Y+ E+ +LR L++ + A LE++ ++ ++G L+++L +DET NLR E + RQ ++ LA + LE ++SL E ++F ++I+ EV+EL Q M + ++ ALR+I+T+YE T QE E Y + ++ + +R+ K E + + Q+Q++ + L N E + + S + L L+E+ ++E+ L E Q LL+ KL L++EIA Y KLLE EE+R+
Sbjct: 42 PLPARVDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRA---KEPTKLADVYQAELRELRLRLDQLTANSARLEVERDNFAQDLGTLRQKL---------------------------------------------QDET-NLRLEAENNLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQLAQQQVHVEMDVAKPDLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAELLRQAKHEANDYRRQLQALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIP 377
BLAST of Intermediate filament protein vs. Ensembl Mouse
Match: Lmna (lamin A [Source:MGI Symbol;Acc:MGI:96794]) HSP 1 Score: 119.783 bits (299), Expect = 1.538e-27 Identity = 113/399 (28.32%), Postives = 197/399 (49.37%), Query Frame = 1
Query: 598 RGDSVALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEI-----------GDL---QKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELA------TVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDN--VETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS 1728
R + A T L+ + R QEK+DLQELN+R A YI++ R LE +N L I E + ++ S +K YE E+ R L+ K RA L+++++ + E GDL Q RL LE + A + E T EGE+ +L + + + L + + ++ + E L + E+ LQ+L+E ++F+K I++ E++E V N + ++S + AL++++ ++E+++ K+ELE +Y ++ R S R++ V H + + SRI+ I S+ ++++ L+ Q A E L ++ + + + L + ++ + + L E Q LLD KL L++EI AY KLLE EE R+ S
Sbjct: 11 RSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDL--------------RGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQRE---FESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIR--IDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLS 390
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Match: sp|Q01240|NF60_DORPE (60 kDa neurofilament protein OS=Doryteuthis pealeii OX=1051067 PE=2 SV=1) HSP 1 Score: 259.61 bits (662), Expect = 1.835e-76 Identity = 153/369 (41.46%), Postives = 244/369 (66.12%), Query Frame = 1
Query: 622 TGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRAT---IDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRV 1719
TG+N +K R +EK+D+++LNERFA+YIEK RFLE QNK+L GE+EELK ++TS +KE+YE E+ + R L++ + K + L+++V L I L+++ LE+ T ++ I +Q ++L EGE+ L+R ++ + ++ + + + DE++K+R + E + H+ E+ Q+L E +EF+K +HA E+KELA +AY++ T EN +W++E+ +A+RDIQ EY+ K ++ ++EA Y L++QE RT T+ N+E T KEEN+++KS + +R+R+ADLE +NA+ E ++ + EE R EL+ +E++T + E+ L ELQ L+D KL LELEIAAY KLLE EESRV
Sbjct: 84 TGVNHVKANREREKQDMRDLNERFANYIEKVRFLEAQNKKLAGELEELKSKWGKETSAIKEMYETELEEARKLIDATNKEKITLDVRVTEL---IDQLERQQKDLEESRTYHQIDQEQIARQNQQLADLEGEISMLRRSIESLEKEKMRQSNILAKMNDEMEKMRMDLNNETINHLDAENRRQTLEEELEFQKDVHAQELKELAALAYRDTTAENREFWRNELAQAIRDIQQEYDAKCDQMRGDIEAYYNLKVQEFRTGATKQNMEVTRNKEENTKLKSNMTEIRNRLADLEARNAQLERTNQDLLRDLEEKDRQNELESCQYKEEITKLRGEMESILKELQDLMDIKLSLELEIAAYRKLLEGEESRV 449
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Match: sp|Q01241|NF70_DORPE (70 kDa neurofilament protein OS=Doryteuthis pealeii OX=1051067 PE=2 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 1.709e-75 Identity = 153/371 (41.24%), Postives = 244/371 (65.77%), Query Frame = 1
Query: 622 TGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRAT---IDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNF 1725
TG+N +K R +EK+D+++LNERFA+YIEK RFLE QNK+L GE+EELK ++TS +KE+YE E+ + R L++ + K + L+++V L I L+++ LE+ T ++ I +Q ++L EGE+ L+R ++ + ++ + + + DE++K+R + E + H+ E+ Q+L E +EF+K +HA E+KELA +AY++ T EN +W++E+ +A+RDIQ EY+ K ++ ++EA Y L++QE RT T+ N+E T KEEN+++KS + +R+R+ADLE +NA+ E ++ + EE R EL+ +E++T + E+ L ELQ L+D KL LELEIAAY KLLE EESRV
Sbjct: 84 TGVNHVKANREREKQDMRDLNERFANYIEKVRFLEAQNKKLAGELEELKSKWGKETSAIKEMYETELEEARKLIDATNKEKITLDVRVTEL---IDQLERQQKDLEESRTYHQIDQEQIARQNQQLADLEGEISMLRRSIESLEKEKMRQSNILAKMNDEMEKMRMDLNNETINHLDAENRRQTLEEELEFQKDVHAQELKELAALAYRDTTAENREFWRNELAQAIRDIQQEYDAKCDQMRGDIEAYYNLKVQEFRTGATKQNMEVTRNKEENTKLKSNMTEIRNRLADLEARNAQLERTNQDLLRDLEEKDRQNELESCQYKEEITKLRGEMESILKELQDLMDIKLSLELEIAAYRKLLEGEESRVGM 451 HSP 2 Score: 54.299 bits (129), Expect = 3.941e-6 Identity = 40/113 (35.40%), Postives = 65/113 (57.52%), Query Frame = 1
Query: 1939 FRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKI-SFTISGKVNLNAGEKISLCAKG-KITGKGRE-IEIDDASWGVGNNVVTTLCDSEGAEKAAHYQ 2268
++RT+KG++SI E D G I LE K E+L G I R VD +NK+ ++ I V L G + + +K + +G + + ++ +WG G+NVVT L + +G +KA + Q
Sbjct: 503 YQRTSKGSVSIKEADSQGCFIALET--KKEENLTGWKIVRKVD--DNKVYTYEIPNLV-LKTGTVVKIWSKNHQAQARGDDLVSRENDTWGTGSNVVTILQNEKGEDKANYTQ 610
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Match: sp|P90901|IFA1_CAEEL (Intermediate filament protein ifa-1 OS=Caenorhabditis elegans OX=6239 GN=ifa-1 PE=1 SV=2) HSP 1 Score: 229.565 bits (584), Expect = 9.921e-65 Identity = 171/556 (30.76%), Postives = 288/556 (51.80%), Query Frame = 1
Query: 619 QTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIG-TKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDA--SWGVGNNVVTTLCDSEGAEKAAHYQEVS 2277
Q ++I+ R +EKK++ +LN+R ASYIEK RFLE QN++L +++ L+ +DT ++ +YE E+ + L++E+ K R +E Q+ ++ E+ +++++L Q RA ID L E E+ LKR + + K E L E+++ R + ++E L I ++ +Q+L E ++F +++H E+KEL T+A ++ T EN ++++E+ A+RDI+ EY+ + ++E+ Y L++QEI+T R N+E + KEE R+++Q+ +R ++ADLE +N+ E + + E+ QRS E L Q+ ++E + ELQ LLD K L+ EIA Y K+LE EE+R A L Q + + + + ET QS F+R+ KGN+SI E G I+L+N K E++ +KR +DG + +T+ L AG+ + + A+ + + + DA S+G GNNV T L + EG E+A H Q S
Sbjct: 56 QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENR--------AGLKQLVE-------------------------QVVKTHAITQETDTETMRVVKGETASRQS----FQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRAGKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQRQS 573
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Match: sp|P90900|IFA4_CAEEL (Intermediate filament protein ifa-4 OS=Caenorhabditis elegans OX=6239 GN=ifa-4 PE=1 SV=3) HSP 1 Score: 219.55 bits (558), Expect = 5.008e-61 Identity = 174/608 (28.62%), Postives = 300/608 (49.34%), Query Frame = 1
Query: 475 SMYKPISQSRNNFKDLQRNAASLSYSMQSGNQQSGSVMP-----LIRGDSVALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDA--SWGVGNNVVTTLCDSEGAEKAAHYQEVS 2277
S Y+ R F ++ A+ ++ SG ++ + L G S ++I++ R +EKK++ ELN+R ASYIEK RFLE QN+++ ++ L+G D++ VK +YE E+ + L+ +S+K RA LE Q+ L E+ + + +L E R +D L E E+ LKR K E + D + R E+E L I ++ +Q+L E +F ++IH +E+ +L +A ++ T EN Y+++E+ A+R+I++EY++ + ++E+ Y L++QEI T +R+ +E + +EE R+++ + MR ++ADLE +N E + ++ EE RS E L + + E + + ELQ L+D K L+ EI Y K+L+ EE+R A L Q + + + + ETT + S + R+ KGNI+I E + G I+LENI + E++ ++R + G + +I FT + L A + + + A+G+ + + D S+G GN+VVTTL + EG ++A+H Q S
Sbjct: 4 SEYRSSISVRPTFNRTMQSTATYGSTISSGTSRTLKITEIGGSNLTSGMSPFGGHAASAIRESRTREKKEMSELNDRLASYIEKVRFLEAQNRKMEKDLNLLRGKWGHDSTSVKVMYETELRSAKDLIADSDKERAQLEDQIKKLVEELNNYRNKLHEAERGADVTRKELDNVLGRLGALEAEIELLKRRISLMEESIGHLKRENHRMIDSLHHARNAVEQETLNRIDYQNQVQTLLEECDFIRRIHDSEIHDLLAMASRDTTVENREYFKNELSSAIREIRSEYDHVSNTTRTDIESWYKLKVQEIHTQNSRNCLEQNYAREEVKRLRTTLGDMRGKMADLEGRNLLLEKQIEDLNYQMEEDMRSYEQSLNDKDTSINKLRDESKILMVELQMLIDTKQTLDAEIVIYRKMLDGEENR--------AGLRQLV-------------------------EQVVKTTSIHQTKEIESLRVLKGETTSHSS----YSRSAKGNIAIQEAEPSGKYIVLENISRRDENIGDWKLRRKIAG-KREIVFTFPREFTLRAQKSVKIFARGQGVHSPPDSLVYDLEDSFGTGNDVVTTLYNKEGEDRASHSQRAS 573
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Match: sp|O02365|IFA2_CAEEL (Intermediate filament protein ifa-2 OS=Caenorhabditis elegans OX=6239 GN=mua-6 PE=1 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 1.630e-56 Identity = 166/556 (29.86%), Postives = 281/556 (50.54%), Query Frame = 1
Query: 619 QTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIG-TKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEI--DDASWGVGNNVVTTLCDSEGAEKAAHYQEVS 2277
Q ++I+ R +EKK++ ELN+R ASYIEK RFL+ QN++L +++ L+G + T VK +YE+EI +++ ++ K E ++ L+ ++ +L+K+ + + R ID L E E+ LKR + + K E L E++++R ++E L I ++ ++++ E ++F K+ TE+KEL A ++ T EN Y+++E+ A+RDI+ EY+ + G + ++E+ Y L++QEI T R N E + KEE R+++Q +R +++DLE +N E + ++ E+ QRS E L Q+ ++E + ELQ LLD K L+ E+ Y ++LE N G+G L + + TS+ T R S R ++R+ KGN++I ET G +ILEN K E L +KR +DG + +I FT L+ + + + A+G+ E+ I D ++GVG NV T L +++G E+A H Q S
Sbjct: 58 QNAASTIRDNREREKKEIMELNDRLASYIEKVRFLDAQNRKLDADLKMLQGRFGKSTGSVKVMYEMEITTATNVVKQTGKDHGETEKEIRKLQDQLDELRKKFEEAQRGRAEDRLKIDDLLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVRIELDQETLLRIDNQNKVKTILEEIDFMKRGFETELKELQAQAARDTTSENREYFKNELANAMRDIRAEYDQIMNGNRNDMESWYQLRVQEINTQSNRQNAENNYQKEEVKRLRNQTSELRQKLSDLESRNLLLEKQIEDLNYQLEDDQRSYEAALNDKDAQIRKLREECQALMVELQMLLDTKQTLDGELKVYRQMLEG-----NSEGNGLRQLVEKVVRTSAINEEADTE--------------------------------TMRVVKGEHSSRTSYQRSAKGNVAIKETSPEGKFVILENTHRAKEEPLGDWKLKRKIDG-KREIVFTFPSDYILHPFQSVKIFARGQGIANPPEVLIFEGDETFGVGANVQTILYNNKGEERATHIQRQS 575
BLAST of Intermediate filament protein vs. TrEMBL
Match: A0A267FSC2 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig010052g3 PE=3 SV=1) HSP 1 Score: 340.502 bits (872), Expect = 1.569e-103 Identity = 226/554 (40.79%), Postives = 330/554 (59.57%), Query Frame = 1
Query: 628 LNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQY---RATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAG--EKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEV 2274
+N++ GR +EKKD+QELNERFA+YIEK RFLE QNK+L E+++LK ++T +VK+ YE E+ QLR LL++SEK +A E++++SLE ++ +LQ +LL++ Q+ R TIDK ++L ++GE+ L+R T + ++++ E LRDE+ +LR + + E L HI E++ QSLRE +EF KQIH +E+KELA +AY++ T EN +W++EM +AL +IQ EY+NK+ ++ E+E+ Y +++QE RT+ TRDN+E +H +EEN RIK Q+ R+RI +LE +NA+ E L +R EE +R E++ L+ L TQ L L ELQ+L+D KL LELEIAAY KLLE EE+R+N +SQ S S A G G S T YQ RT KGN+SI E G I+LEN G K E + G + R +D I FT+ V L G + I + A+G ++E ++SWGVG N+ T+L ++EG E+A H Q+
Sbjct: 72 VNNMLNGREKEKKDMQELNERFANYIEKVRFLEAQNKKLSNELQQLKDRWGKETERVKQTYETELAQLRKLLDDSEKQKAEAEVRISSLEDQLNELQ---VLLDEANRQHQVDRETIDKLNQQLADYDGEISLLRRRVATFDEERSRDRKEIKRLRDEVNRLRGDLDAETLNHINAENEAQSLREQLEFMKQIHESELKELAALAYRDTTSENREFWKNEMAQALHEIQREYDNKMDVMRSEIESQYSMKVQEARTTNTRDNMELSHLREENKRIKGQMTDARNRIPELEARNAQLERELEELRREMEEAERECEMEKGRLRTDLANTQATLEEYLKELQTLMDMKLSLELEIAAYRKLLEGEETRINQHHRTQELMSQKSSTVESRSFAVEQQAMHQGQNKQQMSLIKGEMSAK----------------TTYQ-------RTAKGNVSIQECSADGKYILLENTGKKKEDISGWRLLRNIDNGRQVIKFTVPNGVVLGDGPHKNIRIWARGLKPPGSDDLEAAESSWGVGANINTSLYNTEGEERATHTQKT 599
BLAST of Intermediate filament protein vs. TrEMBL
Match: W0GAA8 (Intermediate filament b-like protein OS=Macrostomum lignano OX=282301 GN=if1 PE=2 SV=1) HSP 1 Score: 339.732 bits (870), Expect = 3.253e-103 Identity = 226/554 (40.79%), Postives = 330/554 (59.57%), Query Frame = 1
Query: 628 LNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQY---RATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAG--EKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEV 2274
+N++ GR +EKKD+QELNERFA+YIEK RFLE QNK+L E+++LK ++T +VK+ YE E+ QLR LL++SEK +A E++++SLE ++ +LQ +LL++ Q+ R TIDK ++L ++GE+ L+R T + ++++ E LRDE+ +LR + + E L HI E++ QSLRE +EF KQIH +E+KELA +AY++ T EN +W++EM +AL +IQ EY+NK+ ++ E+E+ Y +++QE RT+ TRDN+E +H +EEN RIK Q+ R+RI +LE +NA+ E L +R EE +R E++ L+ L TQ L L ELQ+L+D KL LELEIAAY KLLE EE+R+N +SQ S S A G G S T YQ RT KGN+SI E G I+LEN G K E + G + R +D I FT+ V L G + I + A+G ++E ++SWGVG N+ T+L ++EG E+A H Q+
Sbjct: 72 VNNMLNGREKEKKDMQELNERFANYIEKVRFLEAQNKKLSNELQQLKDRWGKETERVKQTYETELAQLRKLLDDSEKQKAEAEVRISSLEDQLNELQ---VLLDEANRQHQVDRETIDKLNQQLADYDGEISLLRRRVATFDEERSRDQKEIKRLRDEVNRLRGDLDAETLNHINAENEAQSLREQLEFMKQIHESELKELAALAYRDTTSENREFWKNEMAQALHEIQREYDNKMDVMRSEIESQYSMKVQEARTTNTRDNMELSHLREENKRIKGQMTDARNRIPELEARNAQLERELEELRREMEEAERECEMEKGRLRTDLANTQATLEEYLKELQTLMDMKLSLELEIAAYRKLLEGEETRINQHHRTQELMSQKSSTVESRSFAVEQQAMHQGQNKQQMSLIKGEMSAK----------------TTYQ-------RTAKGNVSIQECSADGKYILLENTGKKKEDISGWRLLRNIDNGRQVIKFTVPNGVVLGDGPHKNIRIWARGLKPPGSDDLEAAESSWGVGANINTSLYNTEGEERATHTQKT 599
BLAST of Intermediate filament protein vs. TrEMBL
Match: A0A267EDW2 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig015143g2 PE=3 SV=1) HSP 1 Score: 315.464 bits (807), Expect = 9.333e-94 Identity = 209/554 (37.73%), Postives = 320/554 (57.76%), Query Frame = 1
Query: 628 LNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQY---RATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEK--ISLCAKG-KITGKGR-EIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQ 2268
++S+ GR +EK+D+QELNER A YIEK RFLE QNK+L E+++LK ++T K+K YE E+ QLR LL ++EK +A E++++SLE ++ +LQ +LL++ + R TIDK +++ ++GE+ L+R + +++ ET LRD++ +LR + + E L HI E+ QSLRE ++F KQ+H +E+KELA +AY++ T EN +W++EM +AL DIQ EYE KL ++ E+EA Y +++QE RT+ TRDN+E H +EE+ RIK Q+ R+RI +LE +NA+ E L +R EE +R E+ L+ L + L + ELQ L+DAKL LELEI AY KLLE EE V + T++Q S + + A G S + ++RT KGN+SI E G ++LEN G K E + G + R +D + + +T+ L+ G++ + + A+G + G G ++E + SWGVG N+VT+L + EG E+A H Q
Sbjct: 92 VSSMLTGREKEKRDMQELNERLAGYIEKVRFLEAQNKKLSNELQQLKDRWGKETEKIKLTYETELQQLRKLLEDAEKHKAEAEVRISSLEDQLNELQ---VLLDEANRMHQVDRETIDKLNQQMADYDGEISLLRRRVAAFDEERARDQRETKRLRDDVSRLRTDLDTETLNHINAENAAQSLREELDFLKQVHESELKELAILAYRDTTNENREFWRNEMSQALHDIQREYEVKLDSMRSEIEAQYSVKVQEARTTNTRDNLELAHLREESKRIKGQMTDARNRIPELEARNAQLERELEELRREMEEAERECEMTKSQLRADLASSNATLEEYMRELQVLMDAKLSLELEIHAYRKLLEGEE--VRINQRAQETITQRSSTVEKTSVSVEQQQLPSPAAAQQMNLVKGEM-----------------------SAKTTYQRTAKGNVSIQECSPDGKFVLLENTGKKKEDIGGWKLSRNIDNNRQTVRYTVPMGTVLDDGQRKTVKIWARGHRPLGSGSGDLEAGETSWGVGANIVTSLYNMEGEERATHNQ 617
BLAST of Intermediate filament protein vs. TrEMBL
Match: A0A267GC02 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig015143g3 PE=3 SV=1) HSP 1 Score: 313.153 bits (801), Expect = 7.601e-93 Identity = 208/554 (37.55%), Postives = 319/554 (57.58%), Query Frame = 1
Query: 628 LNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQY---RATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEK--ISLCAKG-KITGKGR-EIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQ 2268
++S+ GR +EK+D+QELNER A YIEK RFLE QNK+L E+++LK ++T K+K YE E+ QLR LL ++EK +A E++++SLE ++ +LQ +LL++ + R TIDK +++ ++GE+ L+R + +++ E LRD++ +LR + + E L HI E+ QSLRE ++F KQ+H +E+KELA +AY++ T EN +W++EM +AL DIQ EYE KL ++ E+EA Y +++QE RT+ TRDN+E H +EE+ RIK Q+ R+RI +LE +NA+ E L +R EE +R E+ L+ L + L + ELQ L+DAKL LELEI AY KLLE EE V + T++Q S + + A G S + ++RT KGN+SI E G ++LEN G K E + G + R +D + + +T+ L+ G++ + + A+G + G G ++E + SWGVG N+VT+L + EG E+A H Q
Sbjct: 92 VSSMLTGREKEKRDMQELNERLAGYIEKVRFLEAQNKKLSNELQQLKDRWGKETEKIKLTYETELQQLRKLLEDAEKHKAEAEVRISSLEDQLNELQ---VLLDEANRLHQVDRETIDKLNQQMADYDGEISLLRRRVAAFDEERARDQREIKRLRDDVSRLRTDLDTETLNHINAENAAQSLREELDFLKQVHESELKELAILAYRDTTNENREFWRNEMSQALHDIQREYEVKLDSMRSEIEAQYSVKVQEARTTNTRDNLELAHLREESKRIKGQMTDARNRIPELEARNAQLERELEELRREMEEAERECEMTKSQLRADLASSNATLEEYMRELQVLMDAKLSLELEIHAYRKLLEGEE--VRINQRAQETITQRSSTVEKTSVSVEQQQLPSPAAAQQMNLVKGEM-----------------------SAKTTYQRTAKGNVSIQECSPDGKFVLLENTGKKKEDIGGWKLSRNIDNNRQTVRYTVPMGTVLDDGQRKTVKIWARGHRPLGSGSGDLEAGEPSWGVGANIVTSLYNMEGEERATHNQ 617
BLAST of Intermediate filament protein vs. TrEMBL
Match: A0A1I8JG08 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=3 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 1.441e-89 Identity = 208/504 (41.27%), Postives = 299/504 (59.33%), Query Frame = 1
Query: 628 LNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQY---RATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKV--ESLEGMTIKRVVDGSENKISFTISGKVNLNAG 2124
+N++ GR +EKKD+QELNERFA+YIEK RFLE QNK+L E+++LK ++T +VK+ YE E+ QLR LL++SEK +A E++++SLE ++ +LQ +LL++ Q+ R TIDK ++L ++GE+ L+R T + ++++ E LRDE+ +LR + + E L HI E++ QSLRE +EF KQIH +E+KELA +AY++ T EN +W++EM +AL +IQ EY+NK+ ++ E+E+ Y +++QE RT+ TRDN+E +H +EEN RIK Q+ R+RI +LE +NA+ E L +R EE +R E++ L+ L TQ L L ELQ+L+D KL LELEIAAY KLLE EE+R+N +SQ S S A G G S T YQ RT KGN+SI E G I+LEN G K E + G + R +D I FT+ V L G
Sbjct: 98 VNNMLNGREKEKKDMQELNERFANYIEKVRFLEAQNKKLSNELQQLKDRWGKETERVKQTYETELAQLRKLLDDSEKQKAEAEVRISSLEDQLNELQ---VLLDEANRQHQVDRETIDKLNQQLADYDGEISLLRRRVATFDEERSRDQKEIKRLRDEVNRLRGDLDAETLNHINAENEAQSLREQLEFMKQIHESELKELAALAYRDTTSENREFWKNEMAQALHEIQREYDNKMDVMRSEIESQYSMKVQEARTTNTRDNMELSHLREENKRIKGQMTDARNRIPELEARNAQLERELEELRREMEEAERECEMEKGRLRTDLANTQATLEEYLKELQTLMDMKLSLELEIAAYRKLLEGEETRINQHHRTQELMSQKSSTVESRSFAVEQQAMHQGQMSLIKGEMSAK--------------------TTYQ-------RTAKGNVSIQECSADGKYILLENTGKKASKEDISGWRLLRNIDNGRQVIKFTVPNGVVLGDG 571
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Match: vim (vimentin [Source:NCBI gene;Acc:103044141]) HSP 1 Score: 125.561 bits (314), Expect = 3.028e-30 Identity = 112/381 (29.40%), Postives = 192/381 (50.39%), Query Frame = 1
Query: 589 PLIRGDSVALQTGLNS-IKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS 1728
P R D AL +N+ K R EK ++Q LN+RFASYIEK RFLE+QNK L E+E L+G + TS+V ++YE E+ +LR +QV+ L IGD +A ++ +R L GE +++R ++ + + +D +NL RQ+ + +LA + LE L+SL+E + F K++H E+ EL + + +M + ++ ALRD++++YE T QE E Y + ++ + R + K++ + + Q+ ++ + L+ N E + + ++ + ++ L++ + + E+ L E Q LL+ K+ L++EIA Y KLLE EESR+ F
Sbjct: 65 PSPRLD-FALSDAINTEFKANRTNEKAEMQHLNDRFASYIEKVRFLEQQNKSLSAELELLRG---KGTSRVGDLYEEEMRELR--------------LQVDQL---IGD---------------KARVEVERDNL----GE--DIQRLREKLQEEIIQREDAENNLH----GFRQDVDNASLARLDLERKLESLQEEIIFLKKLHDEEIAELQAQIHDQHVQIDMDVAKPDLTAALRDVRSQYETLATKNIQEAEDWYKSKFTDLSDAAARSSEAIRLAKQDANEYRRQVHALTCEVDALKGTNESLERQMRELEDSFGMESSGYQDTIVRLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRLCFP 399
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Match: vim (vimentin [Source:NCBI gene;Acc:103044141]) HSP 1 Score: 124.02 bits (310), Expect = 1.060e-29 Identity = 111/378 (29.37%), Postives = 191/378 (50.53%), Query Frame = 1
Query: 589 PLIRGDSVALQTGLNS-IKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRV 1719
P R D AL +N+ K R EK ++Q LN+RFASYIEK RFLE+QNK L E+E L+G + TS+V ++YE E+ +LR +QV+ L IGD +A ++ +R L GE +++R ++ + + +D +NL RQ+ + +LA + LE L+SL+E + F K++H E+ EL + + +M + ++ ALRD++++YE T QE E Y + ++ + R + K++ + + Q+ ++ + L+ N E + + ++ + ++ L++ + + E+ L E Q LL+ K+ L++EIA Y KLLE EESR+
Sbjct: 65 PSPRLD-FALSDAINTEFKANRTNEKAEMQHLNDRFASYIEKVRFLEQQNKSLSAELELLRG---KGTSRVGDLYEEEMRELR--------------LQVDQL---IGD---------------KARVEVERDNL----GE--DIQRLREKLQEEIIQREDAENNLH----GFRQDVDNASLARLDLERKLESLQEEIIFLKKLHDEEIAELQAQIHDQHVQIDMDVAKPDLTAALRDVRSQYETLATKNIQEAEDWYKSKFTDLSDAAARSSEAIRLAKQDANEYRRQVHALTCEVDALKGTNESLERQMRELEDSFGMESSGYQDTIVRLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI 396
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Match: lmnb2 (lamin B2 [Source:NCBI gene;Acc:103025469]) HSP 1 Score: 123.635 bits (309), Expect = 5.513e-29 Identity = 145/579 (25.04%), Postives = 259/579 (44.73%), Query Frame = 1
Query: 610 VALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQV-----------NSLEYEIGDL---QKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELAT------VAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNA-------EYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEI---DDASWGVGNNVVTTLCDSEGAEKA 2256
A T L+ + R QEK++L+ LN+R A YI++ R LE +N +L+ ++ E + T ++ S +K +YE E+ R +++E K RA L+I + S + + GDL Q R+ LE Q A ++ E E+ ++K + + D ++ E E L + LE+ QSL E ++F K + EV+E V + K++ ++ ++ +AL+D++ ++E ++ K+ELE ++ ++ + S ++ + +EE +I+S+ +++ L+ Q A E E LN+ R Y + + +++ ++ + + L E Q LLD KL L++EI AY KLLE EE R+ S ++ ++ S S S S E E S R+ + G +++ E DL G ++ L+N K +SL +KR + G ++I + S K L AG+ +++ A ++ +SWG G+ VT L +S G E A
Sbjct: 13 AASSTPLSPTRISRLQEKEELRHLNDRLAVYIDRVRALELENDRLMVKVSEKEEVTTREVSGIKSLYEAELADARRVVDEIAKERARLQIDLGKSNSELEEITKSFKKKDGDLVLAQARIKELESQYNQSEAALNTALSENAALSAELADVKT--------------QLAKAEDAHAVAKKQLEAETLMRVDLENRCQSLTEELQFRKSMFEEEVRETRRRREKRMVEVDSGAKQD---YEFKLSQALQDLRKQHEEQVGFYKEELEQTFQAKLDNAKVSSDLNDKAVSTAREELQEAHVRIESLSYQLSALQKQAAAAEDRVRELEDILNSERDKY-------RRMMDGKEREMSEMRERMQMQLNEYQELLDVKLALDMEINAYRKLLEGEEDRLKLSPSPSSRVTVSRSTA---------------------------SSSSSRTTRSTKRKRVEEEPVTAPSVRISQQAEATGGVTVEEIDLEGKSVTLKNNADKDQSLGSWRLKRQI-GEADEIVYKFSPKFVLKAGQTVTVWAADAGVAHSPPSDLLWKSQSSWGSGDETVTVLVNSNGEEVA 539
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Match: gfap (glial fibrillary acidic protein [Source:NCBI gene;Acc:103035120]) HSP 1 Score: 117.087 bits (292), Expect = 1.484e-27 Identity = 105/380 (27.63%), Postives = 186/380 (48.95%), Query Frame = 1
Query: 640 KKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDE----IKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSF 1767
++ R EK ++ LN+RFASYIEK RFLE+QNK LV E+ +L+G ++ S++ +IY+ E+ +LR ++ +A LEI+ ++L ++ L++RL +DET+ LR E + RQ+ ++ A+ + LE +++L++ + F K++H E+KEL ++ + ++ ALRDI+ +YE + QE E Y + ++ + R+ K+E + + QIQ++ + L N E L + + + + ++ L++++ ++E+ L E Q LL+ KL L++EIA Y KLLE EESR+ A L QF +
Sbjct: 76 RETRTNEKVEMMGLNDRFASYIEKVRFLEQQNKMLVAELNQLRG---KEPSRLGDIYQEELRELRRQVDGLNAGKARLEIERDNLAADLVTLKQRL---------------------------------------------QDETA-LRQEADNNLNGFRQDVDEAAMNRVQLERKIEALQDEINFLKKVHEEEMKELQEQLMAQQVHVDLDVSKPDLTAALRDIRVQYEAMASSNMQETEEWYRSKFADLTDAANRNAESLRQAKQEANDYRRQIQALTCDLESLRGTNESLERQLREMEERFSIETAAYQDTVVRLEDEIQTLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEESRITVPVQSFANL-QFRDY 405
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Match: gfap (glial fibrillary acidic protein [Source:NCBI gene;Acc:103035120]) HSP 1 Score: 117.472 bits (293), Expect = 1.589e-27 Identity = 105/377 (27.85%), Postives = 185/377 (49.07%), Query Frame = 1
Query: 640 KKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDE----IKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQF 1758
++ R EK ++ LN+RFASYIEK RFLE+QNK LV E+ +L+G ++ S++ +IY+ E+ +LR ++ +A LEI+ ++L ++ L++RL +DET+ LR E + RQ+ ++ A+ + LE +++L++ + F K++H E+KEL ++ + ++ ALRDI+ +YE + QE E Y + ++ + R+ K+E + + QIQ++ + L N E L + + + + ++ L++++ ++E+ L E Q LL+ KL L++EIA Y KLLE EESR+ A L QF
Sbjct: 76 RETRTNEKVEMMGLNDRFASYIEKVRFLEQQNKMLVAELNQLRG---KEPSRLGDIYQEELRELRRQVDGLNAGKARLEIERDNLAADLVTLKQRL---------------------------------------------QDETA-LRQEADNNLNGFRQDVDEAAMNRVQLERKIEALQDEINFLKKVHEEEMKELQEQLMAQQVHVDLDVSKPDLTAALRDIRVQYEAMASSNMQETEEWYRSKFADLTDAANRNAESLRQAKQEANDYRRQIQALTCDLESLRGTNESLERQLREMEERFSIETAAYQDTVVRLEDEIQTLKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEESRITVPVQSFANL-QF 402
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Match: lmnb2 (lamin B2 [Source:ZFIN;Acc:ZDB-GENE-990630-13]) HSP 1 Score: 108.612 bits (270), Expect = 7.283e-25 Identity = 138/585 (23.59%), Postives = 266/585 (45.47%), Query Frame = 1
Query: 610 VALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTI----------QDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKL-------RQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVY---------WQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXV-------ALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEI---DDASWGVGNNVVTTLCDSEGAEKA 2256
+ +++ L+ + R QEK+ L ELN+R A+YIE+ R LE +L+ + + + T ++ Y+ E+ ++R L+++ ++A LEIQ+ + E + + R ++Y + + E ++ + T S D + E +LR+++ +L +Q E+E LA + LE+ + +L+E +EF K+IH E+ E +E V ++ ++ AL +++ ++E ++ +QEL+ Q +R +K ++ T + + I+ ++ SR+ L Q + +H+L ++ E + +L + + +L + +EL L E + LLD KL L++EIAAY KLLE EESR+N S + S + TS+S + G S ++R + + S G+I I E D+ G ++ + N K + L G +KR ++ + +I++ S + L AG+ +++ A ++ +SWG G+++ T+L +S+G E A
Sbjct: 3 IEMKSLLSPTRVTRLQEKESLVELNDRLAAYIERVRSLEVDKARLLARVSMWEEEEEEQRQKSERQREATGGLRAAYDAELAEVRRALDDALGAKAALEIQLRLAQVERDEGRSRC-------SKYEQEWNVALGRIRDMEVQLCAKEASLSTASGDKEYLETEVDDLRNQVNQLEGVLVSSKQQLEEETLARVDLENRMLTLQEELEFTKRIHEQEIHE------SRSKRETHVLEIDGGQQQAFEYKLSEALTELRQQHEEQVQLYRQELD-------QTMR-AKLEKSILTPEKQSLDISIREDLREATSRVGTLSSQLSAAQHDLALLQGRVRELEETLSHERDQSKRRLDESDRELAELREVMDEQLIEYEQLLDIKLALDMEIAAYRKLLEGEESRLNLSPEKGVQSSVVQTSTSASHSIRTMPGKRKRVQLEGFVDSMAQ---------------SQRSVSQHAS--------ASGSIGIKEVDMEGKSVTMVNNSEKDQPLGGWVLKRQIE-DQAEIAYKFSSRYVLKAGQTVTIWAANAGVSHNPPSDLLWKTQSSWGTGDDIRTSLLNSDGEEVA 542
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Match: desmb (desmin b [Source:ZFIN;Acc:ZDB-GENE-061027-102]) HSP 1 Score: 91.2781 bits (225), Expect = 7.120e-20 Identity = 115/399 (28.82%), Postives = 185/399 (46.37%), Query Frame = 1
Query: 583 VMPLIRGDSV--ALQTGLNS-IKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNE--SEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELAT--------VAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIR-------ANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRV 1719
MP G SV +L LN+ + R EK +LQELN+RFA+YI+K R+LE+QNK L+ E+ LKG ++ ++V +YE E+ +LR+ + EK+R GD+++ LL EL+R + + ++ NL + RQ+ + LA + LE ++SL+E + F K+IH E++E+ V Y TK ++ ALRDI+ EYE E E Y + ++ + R+N K+E + Q+Q+ + I L+ N E + + ANY++T + L++ + + E+ L + Q LL K+ L++EIA Y KLLE EE+RV
Sbjct: 63 AMP---GQSVDFSLAEALNADYRTTRTNEKVELQELNDRFANYIDKVRYLEQQNKALLAELALLKG---REPTRVGPLYEQELRELRAQVERLTGEKAR--------------GDVERANLL--------------------------DELQRLQQRLQEETAAREEAEKNL----QAFRQDVDDATLARVDLERKVESLQEEIAFLKKIHDEELREVQVQVQEQTVHVEYDVGTKPDLTA-------ALRDIRAEYEGIAAKNVAEAEEWYKSKFLDLSEAAVRNNEALRAAKQELMDYRRQVQAQQCDIDSLKGANESLERQIREMEERFSVESANYQDT-------ITRLEDDIGNLKDEMARHLRDYQELLHVKMALDIEIATYRKLLEGEETRV 397
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010102.1 (pep scaffold:Pmarinus_7.0:GL478364:74479:82531:1 gene:ENSPMAG00000009106.1 transcript:ENSPMAT00000010102.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 90.5077 bits (223), Expect = 3.022e-19 Identity = 95/362 (26.24%), Postives = 166/362 (45.86%), Query Frame = 1
Query: 634 SIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKEL-ATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESR 1716
S+ R QEK+ ++ LN+RFA++I+K RFLE+QNK L + L+ T +S + E++E IN LR Q++ L ++ G L L ++ + +RA + + EGE V +K+ + + L+ + LE LQ L + + F + I E+ EL A + + N E ++ + D++ +YE + E +A Y + Q + + R++ E + E + + Q+Q R+ + L+ Q A+ E + E R + + L+E++ +QE+ + E Q L++ KL L++EI Y KLLE EESR
Sbjct: 132 SVLPTRTQEKEAIKHLNDRFANFIDKVRFLEQQNKVLEAQWYALQEKTTTGSS-IDEMFEAYINGLRR--------------QLDGLGHDKGQLNGNLGQMQAVVEDFRAKYEAEINNRNAAEGEFVVVKK----------------------------DVDGAYLSKVELETRLQGLVDEINFLRSIFTQELSELEAQIKHTNVLVEIDNSRNLDVDGIIADVRQQYETIAARSRAEADAFYQDKFQSLHSDSGRNDEELRMTRNEITELNRQMQRFRAEMEALKKQRAKLESAIAEAEGRGEADIREAKAAIAQLEEEIHKAKQEMARHVREYQELMNVKLALDIEIVTYRKLLEGEESR 450
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010061.1 (pep scaffold:Pmarinus_7.0:GL478364:48285:55057:1 gene:ENSPMAG00000009104.1 transcript:ENSPMAT00000010061.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 89.7373 bits (221), Expect = 3.571e-19 Identity = 101/364 (27.75%), Postives = 168/364 (46.15%), Query Frame = 1
Query: 634 SIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLN--ESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKEL-ATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESR 1716
S+ R QEK+ ++ LN+RFA++I+K RFLE+QNK L + L+ T +S V E++E IN LR L+ E RA GDL + ++ED +Y A I S+ +E DE +++ + L+ + LE L L+E + F + I A E+ EL A + + N E ++ + D++ +YE + E +A Y + Q + + R++ E + E + + Q+Q R+ + L+ Q A+ E + E R + + L+E++ +QE+ + E Q L++ KL L++EI Y KLLE EESR
Sbjct: 130 SVLPTRTQEKEAIKHLNDRFANFIDKVRFLEQQNKVLEAQWYALQEKTTTGSS-VDEMFEAYINGLRRQLDGLGHENGRAN------------GDLGQMQAVVEDFRAKYEAEI------------------------SLRTERE--------DEFVFAKKDVDGAYLSKVELEAKLDGLQEDINFMRSIFAQELSELEAQIKHTNVLVEIDNSRNLDVDGIIADVRHQYETIAARSRAEADAFYQDKFQSLHSDSGRNDEELRVTRNEITELNRQMQRFRAEMEALKKQRAKLESAIAEAEGRGEADIREAKAAIAQLEEEIHKAKQEMARHVREYQELMNVKLALDIEIVTYRKLLEGEESR 448
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Match: zgc:136930 (zgc:136930 [Source:ZFIN;Acc:ZDB-GENE-060312-16]) HSP 1 Score: 75.0998 bits (183), Expect = 2.588e-14 Identity = 97/376 (25.80%), Postives = 169/376 (44.95%), Query Frame = 1
Query: 625 GLNSIKK--GRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGT-IQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIR--TSKTRDNV-----ETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVN 1722
G+ +I R EK LQ LN+RF Y+EK R L+ +N L ++ + GG + V YEV+I +LR+ + + LEI+++++ +L+ + + Q + I ++++E F DTR T+ + L DE+ L++ YE+ E F+ ++ TEV + + +++ L I++EYE T + E EA Y +++EI+ TSKT + + E ++ S++Q++ S+ +E A YE ++ A+Y+ + SLE+ + + L L QSLLD KL L+ EI+ Y LLE E +R +
Sbjct: 173 GVGTIPPMASREAEKSTLQFLNDRFGGYVEKVRLLQRENAALEAQLASITGGAPLSPDGGVTVNYEVQITELRTTIETLILDKVNLEIELDNIRATAEELKAKFEFEAGVRYQLESDISLMKKDIE-FA---------TDTRVNLTTR----YTALTDELTFLKKTYEE----------------EFATFQTRLGTTEVSSGSIIEVDTIKSFDLM-------STLSQIRSEYEVVATRNRAEAEAYYHSRIEEIQAVTSKTTEAINFAKTEIVSVTKDIQMHYSELQTLLSQSYSMEQAVASYEARASSEVASYQSSVASLEVAIETARMDLQRQ-------LLAYQSLLDVKLQLDAEISTYRNLLEGEAARCS 504
BLAST of Intermediate filament protein vs. Ensembl Nematostella
Match: EDO37225 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SGD1]) HSP 1 Score: 108.227 bits (269), Expect = 1.676e-24 Identity = 95/392 (24.23%), Postives = 191/392 (48.72%), Query Frame = 1
Query: 634 SIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSN--------------LRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMV------YWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATL 1749
S K RAQEK +LQ LN+R A+YI++ + LE++N +L E+ + ++ +K +YE E+ R LL+E+ K +A +I+ + D Q +++ DK+ + E E+ ++++ + T+ E N L+D +K + E+E L + LE+ QSL+E F+KQ++ E+ ++ + TK +V ++ M L++++ +Y++ K+E E Y + +E+R + RD+ +EEN + + + S++ LE +N +++++ + + + ++L + ++ + + AL + + L+ K+ L++EI AY KLLE EE+R+ + + L
Sbjct: 32 SAKFTRAQEKAELQHLNDRLATYIDRVKNLEQENSKLRSEVTVSRKTVEREVDSMKSLYETELADARRLLDETAKEKAKQQIESSK---NSNDAQ-----------EFKNKFDKEAAARKKAEKELNDVRKLLHDKENQLTRRNQEALNLESVLRELQGECEELKDALKAAKYALEQETLTRVDLENRCQSLQEEQNFKKQMYDKELSDIRSQLKTVETKRVVVETDYKDKYEGLMAEKLQELREDYDSDARSFKEETELLYSSKFEELRIQRERDSEALAKLREENRNLSKSVDELSSQVHQLEAKNNALVSRVSDLQGLRAQDKEKHDNEILLRENEIAELRTSIDDALRDYEDLMGVKVALDMEITAYRKLLESEETRLEITPPASPVL 409
BLAST of Intermediate filament protein vs. Ensembl Medaka
Match: viml (vimentin [Source:NCBI gene;Acc:101163931]) HSP 1 Score: 129.798 bits (325), Expect = 1.383e-31 Identity = 117/397 (29.47%), Postives = 201/397 (50.63%), Query Frame = 1
Query: 547 YSMQSGNQQSGSVMPLIRGDSV--ALQTGLNS-IKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKEL--ATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVN 1722
Y++++ +S + MP + +S+ +L +NS R EK +Q LN+RFASYIEK RFLE+QNK L+ E+E+L+G + TS++ ++YE E+ +LR +++ +A +E+ ++L +I L+++L R I QR E E AT ++ RQ+ + ALA + LE ++SL+E + F K++H E+ E Q + +M + ++ ALRD++ +YEN T QE E Y + ++ + R+N K+E + + Q+Q++ + L+ N E L + N+ + + L+E + + E+ L E Q LL+ K+ L++EIA Y KLLE EESR++
Sbjct: 50 YAVKTQRLRSSAAMPRLASESLDFSLHDAVNSEFLTNRTNEKAQMQSLNDRFASYIEKVRFLEQQNKILLAELEQLRG---KGTSRIGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIERLREKL----------RDEI-SQREEAE-------------------AT------------MQSFRQDVDSAALARLDLERKIESLQEEINFLKKLHDEEMLEFQSQVQQQQQHVQVDMDVAKPDLTAALRDVRLQYENLATKNIQESEEWYKSKFADLTEAAARNNEALRMAKQEANDYRRQVQALTCEVDALKGTNESLERQLREMEENFSLESNGYQDTIGRLEEDMHNIKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIS 401
BLAST of Intermediate filament protein vs. Ensembl Medaka
Match: viml (vimentin [Source:NCBI gene;Acc:101163931]) HSP 1 Score: 127.872 bits (320), Expect = 4.120e-31 Identity = 117/395 (29.62%), Postives = 199/395 (50.38%), Query Frame = 1
Query: 547 YSMQSGNQQSGSVMPLIRGDSV--ALQTGLNS-IKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKEL--ATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESR 1716
Y++++ +S + MP + +S+ +L +NS R EK +Q LN+RFASYIEK RFLE+QNK L+ E+E+L+G + TS++ ++YE E+ +LR +++ +A +E+ ++L +I L+++L R I QR E E AT ++ RQ+ + ALA + LE ++SL+E + F K++H E+ E Q + +M + ++ ALRD++ +YEN T QE E Y + ++ + R+N K+E + + Q+Q++ + L+ N E L + N+ + + L+E + + E+ L E Q LL+ K+ L++EIA Y KLLE EESR
Sbjct: 50 YAVKTQRLRSSAAMPRLASESLDFSLHDAVNSEFLTNRTNEKAQMQSLNDRFASYIEKVRFLEQQNKILLAELEQLRG---KGTSRIGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIERLREKL----------RDEI-SQREEAE-------------------AT------------MQSFRQDVDSAALARLDLERKIESLQEEINFLKKLHDEEMLEFQSQVQQQQQHVQVDMDVAKPDLTAALRDVRLQYENLATKNIQESEEWYKSKFADLTEAAARNNEALRMAKQEANDYRRQVQALTCEVDALKGTNESLERQLREMEENFSLESNGYQDTIGRLEEDMHNIKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESR 399
BLAST of Intermediate filament protein vs. Ensembl Medaka
Match: ENSORLT00000011270.2 (lamin-A [Source:NCBI gene;Acc:101160250]) HSP 1 Score: 129.028 bits (323), Expect = 1.382e-30 Identity = 142/561 (25.31%), Postives = 248/561 (44.21%), Query Frame = 1
Query: 649 RAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKD----ETSNLRDEIKKL-------RQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELA------TVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTK-----GNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAK---GKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKA 2256
R QEK+DL LN+R A YI+K R LE +N L I E + ++ + +K YE E+ R L+ K RA L++++ L + +L+ R T+ + + + L+ E L KD A EK E +L+ ++ KL R+ + E L + E+ +Q+L+E +EF+K +H+ E++E V N +++ ++S++ AL ++++++E ++ K+E+E +Y +++ R S R + EE +I+++++S ++++ L+ Q A E + ++ + S L + ++ +Q + L E Q LLD KL L++EI AY KLLE EE R+ S T G S S + E + Y + R T+ G +++ E DL G + L N + ++L ++R V GS I F K L AG+++++ A G + SWG G+ TTL + G E A
Sbjct: 23 RLQEKEDLSNLNDRLAVYIDKVRSLEAENACLRVRITESETEVTRELTGLKNAYEAELADARKTLDSVAKERARLQLELGKLREDHKELKAR-------NTKKESDLAAALQRLKDLEA----LMNSKDASLTTALGEKRNLEVENRDLKAQVSKLDTGLGDARKQLQDEMLRRVDGENRIQTLKEELEFQKNLHSEELQETKRRHESRMVEMNNGQQQD---FESKLAEALVEMRSQHELQIQLYKEEIEKTYNAKLESARQSADRSSHLVGAAHEELQQIRTRLESTSAQLSQLQKQLAAREAKIRDLEDALTRERDSTRRLLADKEREMADMRQRMQQQLDEYQELLDVKLALDMEICAYRKLLEGEEERLRLSPSPPPT---------------------RVTGSRSSVGRSVHSSAQSSPAKRRRPNEADSEASSYGGGALARTRITQQASASGRVTVDEVDLDGKYVRLSNKADEDQNLGSWQVRRQV-GSGTPILFKFPAKFTLKAGQRVTIWASNAGGSHNPPSDLVWKSQPSWGTGDQFQTTLISASGEEMA 547
BLAST of Intermediate filament protein vs. Ensembl Medaka
Match: gfap (glial fibrillary acidic protein [Source:NCBI gene;Acc:101173548]) HSP 1 Score: 117.087 bits (292), Expect = 2.003e-27 Identity = 121/448 (27.01%), Postives = 210/448 (46.88%), Query Frame = 1
Query: 448 SGRIVSTTRSMYKP---------ISQSRNNFKDLQRNAASLSYSMQSGNQQSGSVMPLIRGDSVALQTGLNSI-----KKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIR-------ANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS 1728
S R+ S+ R + P +S SR ++ RN S+S + + S + L+ L +S+ K+ R EK ++ LN+RFASYIEK R LE+QNK LV E+ +L+G ++ S++ +IY+ E+ +LR ++ +A LEI+ ++L ++ L++RL + E+V ++ E N + RQ+ ++ +L+ + LE ++SL++ + F K+IH E++E ++ + ++ ALRDI+ +YEN T QE E Y + ++ + R+ K+E + + QIQ + + L N E L + A Y++T + L+E++ ++E+ L E Q LL+ KL L++EIA Y KLLE EESR+
Sbjct: 3 SQRVQSSYRKRFGPQGPGSAGGRLSSSRLSWHGTPRNI-SISSPISRTSLGSSTAALLMGSPGDRLDFSADSLLKAQYKETRTNEKMEMMGLNDRFASYIEKVRMLEQQNKVLVAELNQLRG---KEPSRLGDIYQDELRELRRQVDNLTTGKARLEIERDNLAADLATLKQRL------------------------QDEIV---------------QRQEAEN---NLNAFRQDVDEASLSRVQLERKIESLQDEINFLKKIHEEELRESQEKVLAQQVHVDLDVSKPDLTAALRDIRLQYENLATSNMQETEEWYRSKFADLTDAANRNGEALRQAKQEANEYRRQIQVLTCDLDALRGTNESLERQLREMEDRCAMETAGYQDT-------VSRLEEEIQALKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEESRITIP 397
BLAST of Intermediate filament protein vs. Ensembl Medaka
Match: gfap (glial fibrillary acidic protein [Source:NCBI gene;Acc:101173548]) HSP 1 Score: 117.087 bits (292), Expect = 2.261e-27 Identity = 121/448 (27.01%), Postives = 210/448 (46.88%), Query Frame = 1
Query: 448 SGRIVSTTRSMYKP---------ISQSRNNFKDLQRNAASLSYSMQSGNQQSGSVMPLIRGDSVALQTGLNSI-----KKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIR-------ANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS 1728
S R+ S+ R + P +S SR ++ RN S+S + + S + L+ L +S+ K+ R EK ++ LN+RFASYIEK R LE+QNK LV E+ +L+G ++ S++ +IY+ E+ +LR ++ +A LEI+ ++L ++ L++RL + E+V ++ E N + RQ+ ++ +L+ + LE ++SL++ + F K+IH E++E ++ + ++ ALRDI+ +YEN T QE E Y + ++ + R+ K+E + + QIQ + + L N E L + A Y++T + L+E++ ++E+ L E Q LL+ KL L++EIA Y KLLE EESR+
Sbjct: 3 SQRVQSSYRKRFGPQGPGSAGGRLSSSRLSWHGTPRNI-SISSPISRTSLGSSTAALLMGSPGDRLDFSADSLLKAQYKETRTNEKMEMMGLNDRFASYIEKVRMLEQQNKVLVAELNQLRG---KEPSRLGDIYQDELRELRRQVDNLTTGKARLEIERDNLAADLATLKQRL------------------------QDEIV---------------QRQEAEN---NLNAFRQDVDEASLSRVQLERKIESLQDEINFLKKIHEEELRESQEKVLAQQVHVDLDVSKPDLTAALRDIRLQYENLATSNMQETEEWYRSKFADLTDAANRNGEALRQAKQEANEYRRQIQVLTCDLDALRGTNESLERQLREMEDRCAMETAGYQDT-------VSRLEEEIQALKEEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEESRITIP 397
BLAST of Intermediate filament protein vs. Planmine SMEST
Match: SMESG000030598.1 (SMESG000030598.1) HSP 1 Score: 946.806 bits (2446), Expect = 0.000e+0 Identity = 513/608 (84.38%), Postives = 557/608 (91.61%), Query Frame = 1
Query: 457 IVSTTRSMYKPISQSRNNFKDLQRNAASLSYSMQSGNQQSGSVMPLIRGDSVALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA 2280
+++T+RS YKPISQ RNN KDLQ+ + +SYS QS +QQ S +PLIRGDSVALQ+G+ S+KKGRAQEK+DLQ+LNERFASYIEKARFLE QNKQL EIE+LKGGT+QD SK+KEIYEVEINQLR+L+NESEKS+APLE QV+SLEYEI DL+KRL++LEDI +QY++TIDKQR+++ FEGE+VEL+RFK T+ D KEK+E LRD++KKLRQ+YEKEALAH+TLEH+LQSL+E +EFEKQIH TEVKELATVAY++PTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSLELQLLYLQEQLTGTQQELTVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS DGNATLSQFMSFT +G GG G SGFGSGSRIGGSSGFSGMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA
Sbjct: 89 VITTSRSYYKPISQPRNNLKDLQKTSG-MSYSAQSNSQQGSSNIPLIRGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYEKEALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSLELQLLYLQEQLTGTQQELTVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSADGNATLSQFMSFT--------------SSSGAGGAGGSGFGSGSRIGGSSGFSGMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA 681
BLAST of Intermediate filament protein vs. Planmine SMEST
Match: SMESG000030598.1 (SMESG000030598.1) HSP 1 Score: 938.717 bits (2425), Expect = 0.000e+0 Identity = 513/608 (84.38%), Postives = 557/608 (91.61%), Query Frame = 1
Query: 457 IVSTTRSMYKPISQSRNNFKDLQRNAASLSYSMQSGNQQSGSVMPLIRGDSVALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA 2280
+++T+RS YKPISQ RNN KDLQ+ + +SYS QS +QQ S +PLIRGDSVALQ+G+ S+KKGRAQEK+DLQ+LNERFASYIEKARFLE QNKQL EIE+LKGGT+QD SK+KEIYEVEINQLR+L+NESEKS+APLE QV+SLEYEI DL+KRL++LEDI +QY++TIDKQR+++ FEGE+VEL+RFK T+ D KEK+E LRD++KKLRQ+YEKEALAH+TLEH+LQSL+E +EFEKQIH TEVKELATVAY++PTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSLELQLLYLQEQLTGTQQELTVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS DGNATLSQFMS + GGGGGSSGFGSGSRIGGSSGFSGMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA
Sbjct: 89 VITTSRSYYKPISQPRNNLKDLQKTSG-MSYSAQSNSQQGSSNIPLIRGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYEKEALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSLELQLLYLQEQLTGTQQELTVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSADGNATLSQFMS-------------FTSSSGAGGGGGSSGFGSGSRIGGSSGFSGMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA 682
BLAST of Intermediate filament protein vs. Planmine SMEST
Match: SMESG000030598.1 (SMESG000030598.1) HSP 1 Score: 938.717 bits (2425), Expect = 0.000e+0 Identity = 516/608 (84.87%), Postives = 560/608 (92.11%), Query Frame = 1
Query: 457 IVSTTRSMYKPISQSRNNFKDLQRNAASLSYSMQSGNQQSGSVMPLIRGDSVALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFMSFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA 2280
+++T+RS YKPISQ RNN KDLQ+ + +SYS QS +QQ S +PLIRGDSVALQ+G+ S+KKGRAQEK+DLQ+LNERFASYIEKARFLE QNKQL EIE+LKGGT+QD SK+KEIYEVEINQLR+L+NESEKS+APLE QV+SLEYEI DL+KRL++LEDI +QY++TIDKQR+++ FEGE+VEL+RFK T+ D KEK+E LRD++KKLRQ+YEKEALAH+TLEH+LQSL+E +EFEKQIH TEVKELATVAY++PTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSLELQLLYLQEQLTGTQQELTVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFS DGNATLSQFMS + GAGGGGGGSSGFGSGSRIGGSSGFSGMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA
Sbjct: 84 VITTSRSYYKPISQPRNNLKDLQKTSG-MSYSAQSNSQQGSSNIPLIRGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYEKEALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSLELQLLYLQEQLTGTQQELTVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSADGNATLSQFMS------------FTSSSGAGGGGGGSSGFGSGSRIGGSSGFSGMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA 678
BLAST of Intermediate filament protein vs. Planmine SMEST
Match: SMESG000030599.1 (SMESG000030599.1) HSP 1 Score: 877.856 bits (2267), Expect = 0.000e+0 Identity = 521/536 (97.20%), Postives = 527/536 (98.32%), Query Frame = 1
Query: 154 MESSKRTVITTSKQEGPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYPQSGNEREDYNESGSQQFNEDGSEISGRIVSTTRSMYKPISQSRNNFKDLQRNAASLSYSMQSGNQQSGSVMPLIRGDSVALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFM 1761
MESSKRTVITTSKQEGPISGSSSVTRSGVSMTSGSGSTYGSGSGGELGSGSGSGSGSRYQSSSRVTTTTRSDYPQSGNEREDYNESGSQQFNEDGSEISGRIVSTTRSMYKPISQSRNNFKDLQRNAASLSYSMQSGNQQSGSVMPLIRGDSVALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKL+GIKQELEASY LQMQEIRTSKTRDNVETT YKEENSRIKSQIQSMRSRI DLEMQNAEYEHNLNNIRANYEETQRSLELQLL LQEQLTGTQQ+LT+ LTELQSLLDAKLGLELEIAAY+KLLEFEE+RVNFS DGN SQF+
Sbjct: 1 MESSKRTVITTSKQEGPISGSSSVTRSGVSMTSGSGSTYGSGSGGELGSGSGSGSGSRYQSSSRVTTTTRSDYPQSGNEREDYNESGSQQFNEDGSEISGRIVSTTRSMYKPISQSRNNFKDLQRNAASLSYSMQSGNQQSGSVMPLIRGDSVALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLSGIKQELEASYSLQMQEIRTSKTRDNVETTQYKEENSRIKSQIQSMRSRITDLEMQNAEYEHNLNNIRANYEETQRSLELQLLNLQEQLTGTQQDLTITLTELQSLLDAKLGLELEIAAYSKLLEFEENRVNFSSDGNT--SQFI 534 HSP 2 Score: 146.362 bits (368), Expect = 4.478e-36 Identity = 75/127 (59.06%), Postives = 102/127 (80.31%), Query Frame = 1
Query: 1894 MTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEV 2274
++ E +YQ KRMKFRRTTKGNISIAE D+ G I+LEN GTK ESL GMTIKR +DG+E+ +SFTI + +L++GEK+++ AKGK TGKG+E+EI++ WG+G+ +VT+L ++EG EKA HYQE+
Sbjct: 626 LSSTEAEEYQLKRMKFRRTTKGNISIAEADINGLFIVLENNGTKFESLTGMTIKRNIDGNEDAVSFTIQNRTSLSSGEKLTIWAKGKKTGKGKELEIEEDGWGLGDTIVTSLYNAEGEEKAVHYQEI 752
BLAST of Intermediate filament protein vs. Planmine SMEST
Match: SMESG000030596.1 (SMESG000030596.1) HSP 1 Score: 598.586 bits (1542), Expect = 0.000e+0 Identity = 316/435 (72.64%), Postives = 371/435 (85.29%), Query Frame = 1
Query: 457 IVSTTRSMYKPISQSRNNFKDLQRNAASLSYSMQSGNQQSGSVMPLIRGDSVALQTGLNSIKKGRAQEKKDLQELNERFASYIEKARFLEEQNKQLVGEIEELKGGTIQDTSKVKEIYEVEINQLRSLLNESEKSRAPLEIQVNSLEYEIGDLQKRLLLLEDIGTQYRATIDKQRRELETFEGEMVELKRFKDTRSIDATKEKDETSNLRDEIKKLRQNYEKEALAHITLEHDLQSLRETMEFEKQIHATEVKELATVAYQNPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSXXXXXXXXXXXXXXXXXXXXVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSGDGNATLSQFM 1761
+V+T S KPISQ RN+ +DLQ+ + S +M LIRGDSVALQ+G+ S+KKGRAQEK++LQELNERFASYIEKARFLE QNKQL EIE+LKGGT+QD SK+KEIYEVEINQLR+L+NESEKS+APLE QV+SLEYEI DL+KRL++LEDI +QY++TIDKQR ++ FEGE+VELKRFK T+ D T EK+E +L+D +KKLRQ+YE+EALAH+TLEH+LQSL+E +EFEKQIH TEVKELATVAY++PTKENMV+WQSEMGRALRDIQ EYENKLTGIKQEL++SYG QMQEI+TSKTRDNVETTHYKEENSR+KSQIQSMR RIA+LE QNAEYE NL NIR NYEETQR+L+ QL +Q+QL+GTQQELT A TELQSLLDAKLGLELEIAAYA+LLE EE RV S D + +SQFM
Sbjct: 48 VVTTNHSYIKPISQPRNSLRDLQKTTEN-SQNM------------LIRGDSVALQSGVTSMKKGRAQEKRNLQELNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQYKSTIDKQRNDIAAFEGELVELKRFKGTQGADVTLEKEEVKSLKDSLKKLRQDYEREALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVFWQSEMGRALRDIQNEYENKLTGIKQELDSSYGSQMQEIQTSKTRDNVETTHYKEENSRVKSQIQSMRMRIAELERQNAEYEINLKNIRDNYEETQRNLQSQLFSMQDQLSGTQQELTAASTELQSLLDAKLGLELEIAAYARLLEIEEERVLSSADQRSVMSQFM 469 HSP 2 Score: 134.806 bits (338), Expect = 1.339e-32 Identity = 67/120 (55.83%), Postives = 92/120 (76.67%), Query Frame = 1
Query: 1921 QSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNAGEKISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVSA 2280
SK+M RRTT GNISIAE+D G I+LEN+G++ +SL GM IKR +DG N ++++I K++L+AGE+I++C GK TGKG+E+EI++ SWG G NV+T LCD+ G EKAA YQE+ A
Sbjct: 533 HSKKMSSRRTTTGNISIAESDESGLFIVLENMGSQTQSLSGMMIKRNIDGVANFVTYSIPKKIDLSAGERITICGHGKKTGKGKELEIEEDSWGFGENVITALCDANGEEKAALYQEIVA 652 The following BLAST results are available for this feature:
BLAST of Intermediate filament protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Intermediate filament protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Intermediate filament protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Intermediate filament protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30002072 ID=SMED30002072|Name=Intermediate filament protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2324bpback to top protein sequence of SMED30002072-orf-1 >SMED30002072-orf-1 ID=SMED30002072-orf-1|Name=SMED30002072-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=710bp MESSKRTVITTSKQEGPISGSSSVTRSGVSMTSGSGSTYGSGSGGELGSGback to top Annotated Terms
The following terms have been associated with this transcript:
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