SMED30002068

Overview


Name	SMED30002068
Smed ID	SMED30002068
Length (bp)	461

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30002068 (SMED30002068) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30002068 (SMED30002068) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30002068 (SMED30002068) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30002068 (SMED30002068) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30002068

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 3

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30002068	SMESG000032008.1	SmedASXL_012311	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
nervous system	SMED30002068	SMESG000032008.1	dd_Smed_v4_13194_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
zeta neoblast	SMED30002068	SMESG000032008.1	dd_Smed_v4_13194_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Alignments

SMED30002068 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.008842:25519..25980 -	2275
v31.025204:9701..10162 +	2266

Homology

[Close]

BLAST of SMED30002068 vs. Ensembl Human
Match: RAE1 (ribonucleic acid export 1 [Source:HGNC Symbol;Acc:HGNC:9828])

HSP 1 Score: 145.206 bits (365), Expect = 3.308e-42
Identity = 70/139 (50.36%), Postives = 96/139 (69.06%), Query Frame = -2

Query:   44 EPAGFVVGSIEGRVGIQSMVNEN-TKDSFTFKCHRTTAP-TSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 454
            +P GF +GSIEGRV I  +   N  KD+FTFKCHR+    TS  Q+I+AVN I+ HP+H T+ T+GSDG+ ++WDK++RT+LK+ + Q  QP++    +  GNIFAYA  YDWSKGHEF +  KK  +F+R    +L P
Sbjct:  227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKP 364

[Close]

Query:   44 EPAGFVVGSIEGRVGIQSMVNEN-TKDSFTFKCHRTTAP-TSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 454
            +P GF +GSIEGRV I  +   N  KD+FTFKCHR+    TS  Q+I+AVN I+ HP+H T+ T+GSDG+ ++WDK++RT+LK+ + Q  QP++    +  GNIFAYA  YDWSKGHEF +  KK  +F+R    +L P
Sbjct:  227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKP 364

[Close]

Query:   44 EPAGFVVGSIEGRVGIQSMVNEN-TKDSFTFKCHRTTAP-TSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 454
            +P GF +GSIEGRV I  +   N  KD+FTFKCHR+    TS  Q+I+AVN I+ HP+H T+ T+GSDG+ ++WDK++RT+LK+ + Q  QP++    +  GNIFAYA  YDWSKGHEF +  KK  +F+R    +L P
Sbjct:  227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKP 364

[Close]

BLAST of SMED30002068 vs. Ensembl Human
Match: RAE1 (ribonucleic acid export 1 [Source:HGNC Symbol;Acc:HGNC:9828])

HSP 1 Score: 125.176 bits (313), Expect = 3.508e-34
Identity = 60/115 (52.17%), Postives = 82/115 (71.30%), Query Frame = -2

Query:  116 EPAGFVVGSIEGRVGIQSMVNEN-TKDSFTFKCHRTTAP-TSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSK 454
            +P GF +GSIEGRV I  +   N  KD+FTFKCHR+    TS  Q+I+AVN I+ HP+H T+ T+GSDG+ ++WDK++RT+LK+ + Q  QP++    +  GNIFAYA  YDWSK
Sbjct:  227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACCFNHNGNIFAYASSYDWSK 340

[Close]

BLAST of SMED30002068 vs. Ensembl Human
Match: BUB3 (BUB3 mitotic checkpoint protein [Source:HGNC Symbol;Acc:HGNC:1151])

HSP 1 Score: 65.0846 bits (157), Expect = 1.624e-12
Identity = 44/132 (33.33%), Postives = 68/132 (51.52%), Query Frame = -2

Query:   65 GFVVGSIEGRVGIQSM--VNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDI--DSKGNIFAYAMGYDWSKGHEFNDV-NKKPKLFIRE 445
            G+V+ SIEGRV ++ +    E  K  + FKCHR     + I++I+ VN IS H IH T  T GSDG +  WD  ++ RL       + P ++  +   + G   A A  Y     +E +D  + +  +FIR+
Sbjct:  193 GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKE--NNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQF---HRYPTSIASLAFSNDGTTLAIASSY----MYEMDDTEHPEDGIFIRQ 315

[Close]

BLAST of SMED30002068 vs. Ensembl Celegans
Match: rae-1 (mRNA export factor rae-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93454])

HSP 1 Score: 147.517 bits (371), Expect = 1.387e-43
Identity = 69/138 (50.00%), Postives = 93/138 (67.39%), Query Frame = -2

Query:   44 KEPAGFVVGSIEGRVGIQSMVNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 457
            + PAGF +GSIEGRV +Q +   N KD+FTFKCHR+    +  QEI+AVNDI  HP H T+VT+GSDG+ + WDK++RT+LK+ +P    P+T  D+ S G    YA+GYDWS+GHE N      K+ I +C  D+ P
Sbjct:  233 QNPAGFALGSIEGRVAVQYVDVANPKDNFTFKCHRSAELVNGFQEIYAVNDICFHPQHGTLVTIGSDGRYSMWDKDARTKLKTSEPHP-MPLTCCDVHSSGAFLVYALGYDWSRGHEGN-TQPGSKIVIHKCIEDMKP 368

[Close]

Query:   44 KEPAGFVVGSIEGRVGIQSMVNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 457
            + PAGF +GSIEGRV +Q +   N KD+FTFKCHR+    +  QEI+AVNDI  HP H T+VT+GSDG+ + WDK++RT+LK+ +P    P+T  D+ S G    YA+GYDWS+GHE N      K+ I +C  D+ P
Sbjct:  233 QNPAGFALGSIEGRVAVQYVDVANPKDNFTFKCHRSAELVNGFQEIYAVNDICFHPQHGTLVTIGSDGRYSMWDKDARTKLKTSEPHP-MPLTCCDVHSSGAFLVYALGYDWSRGHEGN-TQPGSKIVIHKCIEDMKP 368

[Close]

BLAST of SMED30002068 vs. Ensembl Celegans
Match: bub-3 (Mitotic checkpoint protein bub-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9XWH0])

HSP 1 Score: 55.0694 bits (131), Expect = 1.791e-9
Identity = 36/113 (31.86%), Postives = 55/113 (48.67%), Query Frame = -2

Query:  116 GFVVGSIEGRVGIQSM---VNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSK 445
             FVV SIEGRV ++ +     E  K  + FKCHR    T   + I  V+ ++ HP + T  T G+DG +  WD  +R R+  +   E   ++    +  G+  A A  Y + K
Sbjct:  208 AFVVSSIEGRVAVEYVDQSGEEMMKRKYAFKCHREKD-TDGTELIHPVHTVAFHPKYGTFATGGADGIVNIWDPFNRKRIIQLHKFETS-ISSLSFNEDGSQLAIATSYQYEK 318

[Close]

BLAST of SMED30002068 vs. Ensembl Fly
Match: Rae1 (gene:FBgn0034646 transcript:FBtr0071683)

HSP 1 Score: 164.081 bits (414), Expect = 4.381e-50
Identity = 78/141 (55.32%), Postives = 104/141 (73.76%), Query Frame = -2

Query:   35 KEPAGFVVGSIEGRVGIQSMVNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTPAKN 457
            KEP G  +GSIEGRV IQ +   N KD+FTFKCHRTT  TS  Q+I+AVNDI+ HP+H T+VT+GSDG  ++WDK++RT+LKS +  +Q  +T    ++ G IFAYA+GYDWSKGHE+ +  KKP++F+R C  +L P  N
Sbjct:  208 KEPTGCALGSIEGRVAIQYVNPGNPKDNFTFKCHRTTG-TSGYQDIYAVNDIAFHPVHGTLVTVGSDGTFSFWDKDARTKLKSSETMDQS-ITKCGFNANGQIFAYAVGYDWSKGHEYFNPAKKPQIFLRSCYDELKPRIN 346

[Close]

BLAST of SMED30002068 vs. Ensembl Fly
Match: CG12782 (gene:FBgn0034838 transcript:FBtr0072048)

HSP 1 Score: 97.8265 bits (242), Expect = 7.869e-25
Identity = 49/132 (37.12%), Postives = 78/132 (59.09%), Query Frame = -2

Query:   68 KEPAGFVVGSIEGRVGIQSMVNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRL--KSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIR 457
            ++   +++    G V  QSM +     SF  +CHR     S I +++AVN++ ++ +   + T+GSDG   +WD + R++L    V PQ   P+T   I   G +FAYA+GYDWSKGHE++D + KP +F+R
Sbjct:  204 RDLTSWLIAKTNGMVFDQSMAHRTV--SFPIRCHRRE--NSGILDVYAVNEVKVNMVTQHIATVGSDGVFCFWDSQMRSKLLESKVHPQ---PITKCAISGDGKLFAYALGYDWSKGHEYSDSSIKPHIFLR 328

[Close]

BLAST of SMED30002068 vs. Ensembl Fly
Match: Bub3 (gene:FBgn0025457 transcript:FBtr0339148)

HSP 1 Score: 61.2326 bits (147), Expect = 1.735e-11
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = -2

Query:  215 GFVVGSIEGRVGIQSMVN--ENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRL 445
            G+V+ SIEGRV ++ + +  E  +  F FKCHR       I++I+ VN +S H ++ T  T GSDG +  WD  ++ RL
Sbjct:  193 GYVMSSIEGRVAVEYLDHDPEVQRRKFAFKCHRNRE--QNIEQIYPVNALSFHNVYQTFATGGSDGIVNIWDGFNKKRL 269

[Close]

BLAST of SMED30002068 vs. Ensembl Fly
Match: Bub3 (gene:FBgn0025457 transcript:FBtr0085465)

HSP 1 Score: 61.2326 bits (147), Expect = 1.735e-11
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = -2

Query:  215 GFVVGSIEGRVGIQSMVN--ENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRL 445
            G+V+ SIEGRV ++ + +  E  +  F FKCHR       I++I+ VN +S H ++ T  T GSDG +  WD  ++ RL
Sbjct:  193 GYVMSSIEGRVAVEYLDHDPEVQRRKFAFKCHRNRE--QNIEQIYPVNALSFHNVYQTFATGGSDGIVNIWDGFNKKRL 269

[Close]

BLAST of SMED30002068 vs. Ensembl Zebrafish
Match: rae1 (ribonucleic acid export 1 [Source:NCBI gene;Acc:393973])

HSP 1 Score: 146.362 bits (368), Expect = 6.877e-43
Identity = 71/139 (51.08%), Postives = 97/139 (69.78%), Query Frame = -2

Query:   44 EPAGFVVGSIEGRVGIQSMVNEN-TKDSFTFKCHRTTAP-TSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 454
            +P GF +GSIEGRV I  +   N  KD+FTFKCHR+    T+T Q+I+AVN IS HP+H T+ T+GSDG+ ++WDK++RT+LK+ + Q  QP+T    +  GNIFAYA  YDWSKGHE+ +  KK  +F+R    +L P
Sbjct:  227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPITACCFNHNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAEELKP 364

[Close]

BLAST of SMED30002068 vs. Ensembl Zebrafish
Match: rae1 (ribonucleic acid export 1 [Source:NCBI gene;Acc:393973])

HSP 1 Score: 146.362 bits (368), Expect = 7.172e-43
Identity = 71/139 (51.08%), Postives = 97/139 (69.78%), Query Frame = -2

Query:   44 EPAGFVVGSIEGRVGIQSMVNEN-TKDSFTFKCHRTTAP-TSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 454
            +P GF +GSIEGRV I  +   N  KD+FTFKCHR+    T+T Q+I+AVN IS HP+H T+ T+GSDG+ ++WDK++RT+LK+ + Q  QP+T    +  GNIFAYA  YDWSKGHE+ +  KK  +F+R    +L P
Sbjct:  227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPITACCFNHNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAEELKP 364

[Close]

BLAST of SMED30002068 vs. Ensembl Zebrafish
Match: bub3 (BUB3 mitotic checkpoint protein [Source:ZFIN;Acc:ZDB-GENE-041010-210])

HSP 1 Score: 65.4698 bits (158), Expect = 5.898e-13
Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = -2

Query:   65 GFVVGSIEGRVGIQSM--VNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDI--DSKGNIFAYAMGYDWSKGHEFNDVNKKP-KLFIRE 445
            G+V+ SIEGRV ++ +    E  K  + FKCHR     + I++++ VN IS H +H T  T GSDG +  WD  ++ RL       + P ++  +   + G++ A A  Y      E  DV+     +FIR+
Sbjct:  193 GYVLSSIEGRVAVEYLDPSLEVQKKKYAFKCHRLKE--NGIEQVYPVNAISFHSVHNTFATGGSDGFVNIWDPFNKKRLCQF---HRYPSSIASLSFSTDGSLLAIASSY----MQELGDVSHPADAVFIRQ 315

[Close]

BLAST of SMED30002068 vs. Ensembl Zebrafish
Match: bub3 (BUB3 mitotic checkpoint protein [Source:ZFIN;Acc:ZDB-GENE-041010-210])

HSP 1 Score: 65.4698 bits (158), Expect = 6.320e-13
Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = -2

Query:   65 GFVVGSIEGRVGIQSM--VNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDI--DSKGNIFAYAMGYDWSKGHEFNDVNKKP-KLFIRE 445
            G+V+ SIEGRV ++ +    E  K  + FKCHR     + I++++ VN IS H +H T  T GSDG +  WD  ++ RL       + P ++  +   + G++ A A  Y      E  DV+     +FIR+
Sbjct:  205 GYVLSSIEGRVAVEYLDPSLEVQKKKYAFKCHRLK--ENGIEQVYPVNAISFHSVHNTFATGGSDGFVNIWDPFNKKRLCQF---HRYPSSIASLSFSTDGSLLAIASSY----MQELGDVSHPADAVFIRQ 327

[Close]

BLAST of SMED30002068 vs. Ensembl Xenopus
Match: bub3 (BUB3 mitotic checkpoint protein [Source:NCBI gene;Acc:493224])

HSP 1 Score: 64.6994 bits (156), Expect = 1.671e-12
Identity = 41/132 (31.06%), Postives = 70/132 (53.03%), Query Frame = -2

Query:   65 GFVVGSIEGRVGIQSM--VNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDI--DSKGNIFAYAMGYDWSKGHEFNDVNK-KPKLFIRE 445
            G+V+ SIEGRV ++ +    E  K  + FKCHR     + I++I+ VN +S H +H T  T GSDG +  WD  ++ RL       + P ++  +   + G+  A A  Y     +E +D++  +  ++IR+
Sbjct:  199 GYVLSSIEGRVAVEYLDPSLEVQKKKYAFKCHRLKE--NNIEQIYPVNAVSFHNLHNTFATGGSDGFVNIWDPFNKKRLCQF---HRYPTSIASLAFSNDGSTLAIAASY----MYEMDDIDHPEDAIYIRQ 321

[Close]

BLAST of SMED30002068 vs. Ensembl Xenopus
Match: bub3 (BUB3 mitotic checkpoint protein [Source:NCBI gene;Acc:493224])

HSP 1 Score: 64.6994 bits (156), Expect = 1.902e-12
Identity = 41/132 (31.06%), Postives = 70/132 (53.03%), Query Frame = -2

Query:   65 GFVVGSIEGRVGIQSM--VNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDI--DSKGNIFAYAMGYDWSKGHEFNDVNK-KPKLFIRE 445
            G+V+ SIEGRV ++ +    E  K  + FKCHR     + I++I+ VN +S H +H T  T GSDG +  WD  ++ RL       + P ++  +   + G+  A A  Y     +E +D++  +  ++IR+
Sbjct:  197 GYVLSSIEGRVAVEYLDPSLEVQKKKYAFKCHRLKE--NNIEQIYPVNAVSFHNLHNTFATGGSDGFVNIWDPFNKKRLCQF---HRYPTSIASLAFSNDGSTLAIAASY----MYEMDDIDHPEDAIYIRQ 319

[Close]

BLAST of SMED30002068 vs. Ensembl Xenopus
Match: bub3 (BUB3 mitotic checkpoint protein [Source:NCBI gene;Acc:493224])

HSP 1 Score: 63.929 bits (154), Expect = 3.677e-12
Identity = 41/131 (31.30%), Postives = 69/131 (52.67%), Query Frame = -2

Query:   68 GFVVGSIEGRVGIQSM--VNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDI--DSKGNIFAYAMGYDWSKGHEFNDVNK-KPKLFIR 445
            G+V+ SIEGRV ++ +    E  K  + FKCHR     + I++I+ VN +S H +H T  T GSDG +  WD  ++ RL       + P ++  +   + G+  A A  Y     +E +D++  +  ++IR
Sbjct:  199 GYVLSSIEGRVAVEYLDPSLEVQKKKYAFKCHRLKE--NNIEQIYPVNAVSFHNLHNTFATGGSDGFVNIWDPFNKKRLCQF---HRYPTSIASLAFSNDGSTLAIAASY----MYEMDDIDHPEDAIYIR 320

[Close]

BLAST of SMED30002068 vs. Ensembl Xenopus
Match: bub3 (BUB3 mitotic checkpoint protein [Source:NCBI gene;Acc:493224])

HSP 1 Score: 63.929 bits (154), Expect = 4.015e-12
Identity = 41/131 (31.30%), Postives = 69/131 (52.67%), Query Frame = -2

Query:   68 GFVVGSIEGRVGIQSM--VNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDI--DSKGNIFAYAMGYDWSKGHEFNDVN-KKPKLFIR 445
            G+V+ SIEGRV ++ +    E  K  + FKCHR     + I++I+ VN +S H +H T  T GSDG +  WD  ++ RL       + P ++  +   + G+  A A  Y     +E +D++  +  ++IR
Sbjct:  193 GYVLSSIEGRVAVEYLDPSLEVQKKKYAFKCHRLKE--NNIEQIYPVNAVSFHNLHNTFATGGSDGFVNIWDPFNKKRLCQF---HRYPTSIASLAFSNDGSTLAIAASY----MYEMDDIDHPEDAIYIR 314

[Close]

BLAST of SMED30002068 vs. Ensembl Mouse
Match: Rae1 (ribonucleic acid export 1 [Source:MGI Symbol;Acc:MGI:1913929])

HSP 1 Score: 144.821 bits (364), Expect = 3.296e-42
Identity = 70/139 (50.36%), Postives = 95/139 (68.35%), Query Frame = -2

Query:   44 EPAGFVVGSIEGRVGIQSMVNEN-TKDSFTFKCHRTTAP-TSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 454
            +P GF +GSIEGRV I  +   N  KD+FTFKCHR+    TS  Q+I+AVN I+ HP+H T+ T+GSDG+ ++WDK++RT+LK+ + Q  QP+     +  GNIFAYA  YDWSKGHEF +  KK  +F+R    +L P
Sbjct:  227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPIAACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKP 364

[Close]

BLAST of SMED30002068 vs. Ensembl Mouse
Match: Bub3 (BUB3 mitotic checkpoint protein [Source:MGI Symbol;Acc:MGI:1343463])

HSP 1 Score: 65.0846 bits (157), Expect = 1.054e-12
Identity = 44/132 (33.33%), Postives = 68/132 (51.52%), Query Frame = -2

Query:   65 GFVVGSIEGRVGIQSM--VNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDI--DSKGNIFAYAMGYDWSKGHEFNDV-NKKPKLFIRE 445
            G+V+ SIEGRV ++ +    E  K  + FKCHR     + I++I+ VN IS H IH T  T GSDG +  WD  ++ RL       + P ++  +   + G   A A  Y     +E +D  + +  +FIR+
Sbjct:  193 GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKE--NNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQF---HRYPTSIASLAFSNDGTTLAIASSY----MYEMDDTEHPEDGIFIRQ 315

[Close]

BLAST of SMED30002068 vs. Ensembl Mouse
Match: Bub3 (BUB3 mitotic checkpoint protein [Source:MGI Symbol;Acc:MGI:1343463])

HSP 1 Score: 64.6994 bits (156), Expect = 1.197e-12
Identity = 44/132 (33.33%), Postives = 68/132 (51.52%), Query Frame = -2

Query:   65 GFVVGSIEGRVGIQSM--VNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDI--DSKGNIFAYAMGYDWSKGHEFNDV-NKKPKLFIRE 445
            G+V+ SIEGRV ++ +    E  K  + FKCHR     + I++I+ VN IS H IH T  T GSDG +  WD  ++ RL       + P ++  +   + G   A A  Y     +E +D  + +  +FIR+
Sbjct:  193 GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKE--NNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQF---HRYPTSIASLAFSNDGTTLAIASSY----MYEMDDTEHPEDGIFIRQ 315

[Close]

BLAST of SMED30002068 vs. Ensembl Mouse
Match: Bub3 (BUB3 mitotic checkpoint protein [Source:MGI Symbol;Acc:MGI:1343463])

HSP 1 Score: 50.8322 bits (120), Expect = 5.124e-8
Identity = 26/68 (38.24%), Postives = 41/68 (60.29%), Query Frame = -2

Query:  248 GFVVGSIEGRVGIQSM--VNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKI 445
            G+V+ SIEGRV ++ +    E  K  + FKCHR     + I++I+ VN IS H IH T  T+ ++ ++
Sbjct:  118 GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKE--NNIEQIYPVNAISFHNIHNTFATVMTELRL 183

[Close]

BLAST of SMED30002068 vs. UniProt/SwissProt
Match: sp|Q93454|RAE1_CAEEL (mRNA export factor rae-1 OS=Caenorhabditis elegans OX=6239 GN=rae-1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.764e-42
Identity = 69/138 (50.00%), Postives = 93/138 (67.39%), Query Frame = -2

Query:   44 KEPAGFVVGSIEGRVGIQSMVNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 457
            + PAGF +GSIEGRV +Q +   N KD+FTFKCHR+    +  QEI+AVNDI  HP H T+VT+GSDG+ + WDK++RT+LK+ +P    P+T  D+ S G    YA+GYDWS+GHE N      K+ I +C  D+ P
Sbjct:  233 QNPAGFALGSIEGRVAVQYVDVANPKDNFTFKCHRSAELVNGFQEIYAVNDICFHPQHGTLVTIGSDGRYSMWDKDARTKLKTSEPHP-MPLTCCDVHSSGAFLVYALGYDWSRGHEGN-TQPGSKIVIHKCIEDMKP 368

[Close]

BLAST of SMED30002068 vs. UniProt/SwissProt
Match: sp|Q7ZWF0|RAE1L_DANRE (mRNA export factor OS=Danio rerio OX=7955 GN=rae1 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 5.191e-42
Identity = 71/139 (51.08%), Postives = 97/139 (69.78%), Query Frame = -2

Query:   44 EPAGFVVGSIEGRVGIQSMVNEN-TKDSFTFKCHRTTAP-TSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 454
            +P GF +GSIEGRV I  +   N  KD+FTFKCHR+    T+T Q+I+AVN IS HP+H T+ T+GSDG+ ++WDK++RT+LK+ + Q  QP+T    +  GNIFAYA  YDWSKGHE+ +  KK  +F+R    +L P
Sbjct:  227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPITACCFNHNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAEELKP 364

[Close]

BLAST of SMED30002068 vs. UniProt/SwissProt
Match: sp|Q3SWS8|RAE1L_RAT (mRNA export factor OS=Rattus norvegicus OX=10116 GN=Rae1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 9.837e-42
Identity = 71/139 (51.08%), Postives = 95/139 (68.35%), Query Frame = -2

Query:   44 EPAGFVVGSIEGRVGIQSMVNEN-TKDSFTFKCHRTTAP-TSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 454
            +P GF +GSIEGRV I  +   N  KD+FTFKCHR+    TS  Q+I+AVN I+ HP+H T+ T+GSDG+ ++WDK++RT+LK+ + Q  QPV     +  GNIFAYA  YDWSKGHEF +  KK  +F+R    +L P
Sbjct:  227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPVAACGFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKP 364

[Close]

BLAST of SMED30002068 vs. UniProt/SwissProt
Match: sp|Q4R6D2|RAE1L_MACFA (mRNA export factor OS=Macaca fascicularis OX=9541 GN=RAE1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.572e-41
Identity = 70/139 (50.36%), Postives = 96/139 (69.06%), Query Frame = -2

Query:   44 EPAGFVVGSIEGRVGIQSMVNEN-TKDSFTFKCHRTTAP-TSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 454
            +P GF +GSIEGRV I  +   N  KD+FTFKCHR+    TS  Q+I+AVN I+ HP+H T+ T+GSDG+ ++WDK++RT+LK+ + Q  QP++    +  GNIFAYA  YDWSKGHEF +  KK  +F+R    +L P
Sbjct:  227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKP 364

[Close]

BLAST of SMED30002068 vs. UniProt/SwissProt
Match: sp|Q5RF99|RAEL1_PONAB (mRNA export factor OS=Pongo abelii OX=9601 GN=RAE1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.588e-41
Identity = 70/139 (50.36%), Postives = 96/139 (69.06%), Query Frame = -2

Query:   44 EPAGFVVGSIEGRVGIQSMVNEN-TKDSFTFKCHRTTAP-TSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 454
            +P GF +GSIEGRV I  +   N  KD+FTFKCHR+    TS  Q+I+AVN I+ HP+H T+ T+GSDG+ ++WDK++RT+LK+ + Q  QP++    +  GNIFAYA  YDWSKGHEF +  KK  +F+R    +L P
Sbjct:  227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKP 364

[Close]

BLAST of SMED30002068 vs. TrEMBL
Match: B4G9Y3 (GL11275 OS=Drosophila persimilis OX=7234 GN=Dper\GL11275 PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.347e-49
Identity = 79/141 (56.03%), Postives = 106/141 (75.18%), Query Frame = -2

Query:   35 KEPAGFVVGSIEGRVGIQSMVNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTPAKN 457
            KEP G+ +GSIEGRV IQ +   N KD+FTFKCHR+T+ TS  Q+I+AVNDI+ HP+H T+VT+GSDG  ++WDK++RT+LKS D  +Q  +T    +S G IFAYA+GYDWSKGHE+ +  KKP++F+R C  +L P  N
Sbjct:  209 KEPTGYALGSIEGRVAIQYVNPANPKDNFTFKCHRSTS-TSGFQDIYAVNDIAFHPVHGTLVTVGSDGTFSFWDKDARTKLKSSDAMDQS-ITKCGFNSNGQIFAYAVGYDWSKGHEYFNPGKKPQIFLRSCYEELKPRIN 347

[Close]

BLAST of SMED30002068 vs. TrEMBL
Match: A0A3B0JQZ5 (Blast:mRNA export factor OS=Drosophila guanche OX=7266 GN=DGUA_6G001061 PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.287e-48
Identity = 79/141 (56.03%), Postives = 105/141 (74.47%), Query Frame = -2

Query:   35 KEPAGFVVGSIEGRVGIQSMVNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTPAKN 457
            KEP G+ +GSIEGRV IQ +   N KD+FTFKCHR+T  TS  Q+I+AVNDI+ HP+H T+VT+GSDG  ++WDK++RT+LKS D  +Q  +T    +S G IFAYA+GYDWSKGHE+ +  KKP++F+R C  +L P  N
Sbjct:  208 KEPTGYALGSIEGRVAIQYVNPANPKDNFTFKCHRSTG-TSGFQDIYAVNDIAFHPVHGTLVTVGSDGTFSFWDKDARTKLKSSDAMDQS-ITKCGFNSNGQIFAYAVGYDWSKGHEYFNPGKKPQIFLRSCYEELKPRIN 346

[Close]

BLAST of SMED30002068 vs. TrEMBL
Match: A0A1W4VRB5 (mRNA export factor OS=Drosophila ficusphila OX=30025 GN=LOC108096940 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.939e-47
Identity = 77/141 (54.61%), Postives = 105/141 (74.47%), Query Frame = -2

Query:   35 KEPAGFVVGSIEGRVGIQSMVNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTPAKN 457
            KEP G+ +GSIEGRV IQ +   N KD+FTFKCHR+T  TS  Q+I+AVNDI+ HP+H T+VT+GSDG  ++WDK++RT+LKS +  +Q  +T    ++ G IFAYA+GYDWSKGHE+ +  KKP++F+R C  +L P  N
Sbjct:  208 KEPTGYALGSIEGRVAIQYVNPANPKDNFTFKCHRSTG-TSGFQDIYAVNDIAFHPVHGTLVTVGSDGTFSFWDKDARTKLKSSEAMDQS-ITKCGFNANGQIFAYAVGYDWSKGHEYFNPAKKPQIFLRSCYDELKPRIN 346

[Close]

BLAST of SMED30002068 vs. TrEMBL
Match: A0A2H1BWE1 (Nucleoporin GLE2 domain protein OS=Fasciola hepatica OX=6192 GN=D915_13696 PE=4 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.120e-47
Identity = 70/140 (50.00%), Postives = 100/140 (71.43%), Query Frame = -2

Query:   38 KEPAGFVVGSIEGRVGIQSMVNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTPAK 457
            ++P GF +GSIEGRV IQ       K++FTFKCHR++A  +   EI+AVND++ HP+H T+ T+GSDG  ++WDK++RT+L+S D  E QP+T    D KG +F YA GYDWSKGH+F D +K  K+ +R C  ++TP++
Sbjct:   10 QQPNGFALGSIEGRVAIQYFNPTTPKENFTFKCHRSSAAVNGYHEIYAVNDMAFHPVHGTLATVGSDGYYSFWDKDARTKLRSSDTSE-QPLTCCTFDPKGQVFCYASGYDWSKGHQFADPSKPVKILMRLCMDEMTPSR 148

[Close]

BLAST of SMED30002068 vs. TrEMBL
Match: B3MIX8 (WD_REPEATS_REGION domain-containing protein OS=Drosophila ananassae OX=7217 GN=Dana\GF11632 PE=4 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 2.621e-47
Identity = 76/141 (53.90%), Postives = 105/141 (74.47%), Query Frame = -2

Query:   35 KEPAGFVVGSIEGRVGIQSMVNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTPAKN 457
            KEP G+ +GSIEGRV IQ +   N KD+FTFKCHR+T  T+  Q+I+AVNDI+ HP+H T+VT+GSDG  ++WDK++RT+LKS +  +Q  +T    ++ G IFAYA+GYDWSKGHE+ +  KKP++F+R C  +L P  N
Sbjct:  208 KEPTGYALGSIEGRVAIQYVSPANPKDNFTFKCHRSTG-TAGFQDIYAVNDIAFHPVHGTLVTVGSDGTFSFWDKDARTKLKSSEAMDQS-ITKCGFNANGQIFAYAVGYDWSKGHEYFNPAKKPQIFLRSCYDELKPRIN 346

[Close]

BLAST of SMED30002068 vs. Ensembl Cavefish
Match: rae1 (ribonucleic acid export 1 [Source:NCBI gene;Acc:103040569])

HSP 1 Score: 145.206 bits (365), Expect = 1.861e-42
Identity = 70/139 (50.36%), Postives = 97/139 (69.78%), Query Frame = -2

Query:   44 EPAGFVVGSIEGRVGIQSMVNEN-TKDSFTFKCHRTTAP-TSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 454
            +P GF +GSIEGRV I  +   N  KD+FTFKCHR+    T+T Q+I+AVN IS HP+H T+ T+GSDG+ ++WDK++RT+LK+ + Q  QP+T    +  GNIFAY+  YDWSKGHE+ +  KK  +F+R    +L P
Sbjct:  227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTTTPQDIYAVNAISFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPITACCFNHNGNIFAYSSSYDWSKGHEYYNPQKKNYIFLRNAAEELKP 364

[Close]

BLAST of SMED30002068 vs. Ensembl Cavefish
Match: bub3 (BUB3 mitotic checkpoint protein [Source:NCBI gene;Acc:103028940])

HSP 1 Score: 62.3882 bits (150), Expect = 7.775e-12
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = -2

Query:  215 GFVVGSIEGRVGIQSM--VNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRL 445
            G+V+ SIEGRV ++ +    E  K  + FKCHR     + I++++ VN IS H +H T  T GSDG +  WD  ++ RL
Sbjct:  193 GYVLSSIEGRVAVEYLDPSLEVQKKKYAFKCHRLKE--NGIEQVYPVNAISFHSVHNTFATGGSDGFVNIWDPFNKKRL 269

[Close]

BLAST of SMED30002068 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007594.1 (pep scaffold:Pmarinus_7.0:GL477618:2658:11743:-1 gene:ENSPMAG00000006850.1 transcript:ENSPMAT00000007594.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 147.902 bits (372), Expect = 2.662e-44
Identity = 70/138 (50.72%), Postives = 97/138 (70.29%), Query Frame = -2

Query:   44 EPAGFVVGSIEGRVGIQSMVNEN-TKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 454
            +P GF +GSIEGRV IQ +   N  KD+FTFKCHR+   T   Q+I+AVN I+ HP+H T+ T+GSDG+ ++WDK++RT+LK+ + Q  QP+T   I++ GNIFAY+  YDWSKGHE+    KK  +F+R    +L P
Sbjct:  225 KPTGFALGSIEGRVAIQYIQPANPAKDNFTFKCHRSNGQTGP-QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPITACSINNNGNIFAYSSSYDWSKGHEYYSPQKKNYIFLRSATEELKP 360

[Close]

BLAST of SMED30002068 vs. Ensembl Sea Lamprey
Match: bub3 (BUB3 mitotic checkpoint protein [Source:ZFIN;Acc:ZDB-GENE-041010-210])

HSP 1 Score: 56.9954 bits (136), Expect = 1.033e-10
Identity = 35/110 (31.82%), Postives = 56/110 (50.91%), Query Frame = -2

Query:  128 GFVVGSIEGRVGIQSM--VNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDI--DSKGNIFAYAMGY 445
             +V+ SIEGRV ++ +    E  K  + FKCHR     + ++ I+ VN I+ H +H T  T GSDG +  WD  ++ RL       + P ++  +     G++ A A  Y
Sbjct:  196 AYVLSSIEGRVAVEYLDPNPEVQKKKYAFKCHRLK--DNGVELIYPVNAIAFHNVHNTFATGGSDGFVNIWDPFNKKRLCQF---HRYPTSIASLAFSMDGSMIAIASSY 300

[Close]

BLAST of SMED30002068 vs. Ensembl Yeast
Match: GLE2 (RNA export factor associated with the nuclear pore complex (NPC); associates with NUP116p; required for polyadenylated RNA export but not for protein import; homologous to S. pombe Rae1p and human RAE1 [Source:SGD;Acc:S000000909])

HSP 1 Score: 99.3673 bits (246), Expect = 4.764e-26
Identity = 53/124 (42.74%), Postives = 72/124 (58.06%), Query Frame = -2

Query:  101 EPAGFVVGSIEGRVGIQSMVNENTKDS-FTFKCHRTT----APTSTIQE-IFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFN 454
            E  G+ +GS+EGR  I+ + +   K S F+FKCHR T    AP S  Q  ++ VN I+ HP++ T VT G DG   +WDK  R RLK   P  Q  + V   +  G++FAYA+ YDW +GH  N
Sbjct:  219 EADGYAIGSVEGRCSIRYIDDGMQKKSGFSFKCHRQTNPNRAPGSNGQSLVYPVNSIAFHPLYGTFVTAGGDGTFNFWDKNQRHRLKGY-PTLQASIPVCSFNRNGSVFAYALSYDWHQGHMGN 341

[Close]

BLAST of SMED30002068 vs. Ensembl Yeast
Match: BUB3 (Kinetochore checkpoint WD40 repeat protein; localizes to kinetochores during prophase and metaphase, delays anaphase in the presence of unattached kinetochores; forms complexes with Mad1p-Bub1p and with Cdc20p, binds Mad2p and Mad3p; functions at kinetochore to activate APC/C-Cdc20p for normal mitotic progression [Source:SGD;Acc:S000005552])

HSP 1 Score: 57.3806 bits (137), Expect = 5.160e-11
Identity = 34/115 (29.57%), Postives = 54/115 (46.96%), Query Frame = -2

Query:  125 KEPAGFVVGSIEGRVGIQSMVNE----NTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYD 457
            KE  G+   SI+GRV ++   ++    N+   F F+CHR     + +   + VN I   P H  + T GSDG I+ W+ ++R ++K+     +  V    I    NI   A   D
Sbjct:  204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA--YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV--KIACSDNILCLATSDD 314

[Close]

BLAST of SMED30002068 vs. Ensembl Nematostella
Match: EDO47476 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RMB7])

HSP 1 Score: 158.688 bits (400), Expect = 1.502e-48
Identity = 71/140 (50.71%), Postives = 102/140 (72.86%), Query Frame = -2

Query:   38 EPAGFVVGSIEGRVGIQSMVNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVV-TMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTPAK 454
            +P GF +GS+EGRV IQ +  E  KD+FTFKCHR+    + +Q+I+AVNDI+ HP+H+ ++ T+GSDGK ++WDK++RT+LK+ + Q   P+T    +S+G IFAYA GYDWSKGHE+ +   KPK+ +R C  +L P K
Sbjct:  198 QPVGFALGSVEGRVAIQYIQPETAKDNFTFKCHRSNG--TNVQDIYAVNDIAFHPVHHCLLSTVGSDGKFSFWDKDARTKLKTSE-QLNLPITACCFNSQGTIFAYAAGYDWSKGHEYFNPQTKPKILLRSCTDELKPRK 334

[Close]

BLAST of SMED30002068 vs. Ensembl Nematostella
Match: EDO43356 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RYP7])

HSP 1 Score: 63.5438 bits (153), Expect = 1.117e-12
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = -2

Query:  215 GFVVGSIEGRVGIQSM--VNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRL 445
            G+V+ SIEGRV ++      E  K  F FKCHRT      I++I+ VN I+ H +H T  T GSDG +  WD  ++ RL
Sbjct:  195 GYVLSSIEGRVAVEYFDPSPEVQKKKFAFKCHRTK--DKEIEQIYPVNAIAFHNMHNTFATGGSDGFVNIWDGFNKKRL 271

[Close]

BLAST of SMED30002068 vs. Ensembl Medaka
Match: rae1 (ribonucleic acid export 1 [Source:NCBI gene;Acc:101160646])

HSP 1 Score: 147.132 bits (370), Expect = 2.346e-43
Identity = 70/139 (50.36%), Postives = 99/139 (71.22%), Query Frame = -2

Query:   44 EPAGFVVGSIEGRVGIQSMVNEN-TKDSFTFKCHRTTAP-TSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 454
            +P GF +GSIEGRV I  +  +N  KD+FTFKCHR+    T+T Q+I+AVN I+ HP+H T+ T+GSDG+ ++WDK++RT+LK+ + Q  QP+T    ++ GNIFAYA  YDWSKGHE+ +  KK  +F+R    +L P
Sbjct:  220 KPTGFALGSIEGRVAIHYINPQNPAKDNFTFKCHRSNGTNTTTPQDIYAVNAIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPITACCFNNNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAEELKP 357

[Close]

BLAST of SMED30002068 vs. Ensembl Medaka
Match: rae1 (ribonucleic acid export 1 [Source:NCBI gene;Acc:101160646])

HSP 1 Score: 147.132 bits (370), Expect = 2.577e-43
Identity = 70/139 (50.36%), Postives = 99/139 (71.22%), Query Frame = -2

Query:   44 EPAGFVVGSIEGRVGIQSMVNEN-TKDSFTFKCHRTTAP-TSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 454
            +P GF +GSIEGRV I  +  +N  KD+FTFKCHR+    T+T Q+I+AVN I+ HP+H T+ T+GSDG+ ++WDK++RT+LK+ + Q  QP+T    ++ GNIFAYA  YDWSKGHE+ +  KK  +F+R    +L P
Sbjct:  227 KPTGFALGSIEGRVAIHYINPQNPAKDNFTFKCHRSNGTNTTTPQDIYAVNAIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPITACCFNNNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAEELKP 364

[Close]

BLAST of SMED30002068 vs. Ensembl Medaka
Match: bub3 (BUB3 mitotic checkpoint protein [Source:NCBI gene;Acc:101164351])

HSP 1 Score: 65.0846 bits (157), Expect = 7.667e-13
Identity = 42/131 (32.06%), Postives = 66/131 (50.38%), Query Frame = -2

Query:   65 GFVVGSIEGRVGIQSM--VNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDI--DSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRE 445
            G+V+ SIEGRV ++ +    E  K  + FKCHR       I+ ++ VN IS H +H T  T GSDG +  WD  ++ RL       + P ++  +   + G + A A  Y   KG   +  + +  +FIR+
Sbjct:  193 GYVLSSIEGRVAVEYLDPSQEVQKKKYAFKCHRLKE--DGIEHVYPVNAISFHSVHNTFATGGSDGFVNIWDPFNKKRLCQF---HRYPTSIASLAFSNDGTMLAIASSYMQEKG---DISHPEDAIFIRQ 315

[Close]

Query:   65 GFVVGSIEGRVGIQSM--VNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDI--DSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRE 445
            G+V+ SIEGRV ++ +    E  K  + FKCHR       I+ ++ VN IS H +H T  T GSDG +  WD  ++ RL       + P ++  +   + G + A A  Y   KG   +  + +  +FIR+
Sbjct:  193 GYVLSSIEGRVAVEYLDPSQEVQKKKYAFKCHRLKE--DGIEHVYPVNAISFHSVHNTFATGGSDGFVNIWDPFNKKRLCQF---HRYPTSIASLAFSNDGTMLAIASSYMQEKG---DISHPEDAIFIRQ 315

[Close]

BLAST of SMED30002068 vs. Planmine SMEST
Match: SMESG000032008.1 (SMESG000032008.1)

HSP 1 Score: 296.204 bits (757), Expect = 1.042e-101
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = -2

Query:   38 TKEPAGFVVGSIEGRVGIQSMVNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTPAK 460
            TKEPAGFVVGSIEGRVGIQSMVNENTKDSFTFKCHR TAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTPAK
Sbjct:  220 TKEPAGFVVGSIEGRVGIQSMVNENTKDSFTFKCHRITAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTPAK 360

[Close]

BLAST of SMED30002068 vs. Planmine SMEST
Match: SMESG000032005.1 (SMESG000032005.1)

HSP 1 Score: 196.823 bits (499), Expect = 4.272e-64
Identity = 85/136 (62.50%), Postives = 109/136 (80.15%), Query Frame = -2

Query:   44 PAGFVVGSIEGRVGIQSMVNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTP 451
            PAG+ +GSIEGRVGIQ + ++N KDSFTFKCHR+    +  Q+I+AVND++ HPI+ T+VT+GSDGK  YWDK++RT+LK  +  EQQPVT   ID KGN+FAYA GYDWSKG+E+ND NKKPK+FIR CN ++ P
Sbjct:  118 PAGYALGSIEGRVGIQCLASQNPKDSFTFKCHRSQVTNNNTQDIYAVNDLAFHPIYQTLVTVGSDGKYTYWDKDARTKLKGSETTEQQPVTSCAIDCKGNVFAYAYGYDWSKGYEYNDPNKKPKIFIRPCNDEMRP 253

[Close]

BLAST of SMED30002068 vs. Planmine SMEST
Match: SMESG000016111.1 (SMESG000016111.1)

HSP 1 Score: 62.3882 bits (150), Expect = 6.076e-12
Identity = 39/128 (30.47%), Postives = 59/128 (46.09%), Query Frame = -2

Query:   68 GFVVGSIEGRVGIQ--SMVNENTKDSFTFKCHRTTAPTSTIQEIFAVNDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDSKGNIFAYAMGYDWSKGHEFNDVNKKPKLFIR 445
            G+ + SIEGRV ++      E  K  + FKCHR       I+ I+ VN I+ H +  T  T G D  +  WD  +R RL  + PQ    ++     + G+  A    Y + KG        +P +F+R
Sbjct:  198 GYALASIEGRVAVEFFEQTPEQQKRKYAFKCHRMK--LDDIEFIYPVNVIAFHKVFNTFATGGCDSLVNVWDGFNRKRLVQL-PQYPTSISSLGFSNDGSTLAIGSSYTYEKGELPECEIVEPNIFVR 322

The following BLAST results are available for this feature:

BLAST of SMED30002068 vs. Ensembl Human
BLAST of SMED30002068 vs. Ensembl Celegans
BLAST of SMED30002068 vs. Ensembl Fly
BLAST of SMED30002068 vs. Ensembl Zebrafish
BLAST of SMED30002068 vs. Ensembl Xenopus
BLAST of SMED30002068 vs. Ensembl Mouse
BLAST of SMED30002068 vs. UniProt/SwissProt
BLAST of SMED30002068 vs. TrEMBL
BLAST of SMED30002068 vs. Ensembl Cavefish
BLAST of SMED30002068 vs. Ensembl Sea Lamprey
BLAST of SMED30002068 vs. Ensembl Yeast
BLAST of SMED30002068 vs. Ensembl Nematostella
BLAST of SMED30002068 vs. Ensembl Medaka
BLAST of SMED30002068 vs. Planmine SMEST

BLAST of SMED30002068 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RAE1	3.308e-42	50.36	ribonucleic acid export 1 [Source:HGNC Symbol;Acc:...	[more]
RAE1	3.308e-42	50.36	ribonucleic acid export 1 [Source:HGNC Symbol;Acc:...	[more]
RAE1	3.308e-42	50.36	ribonucleic acid export 1 [Source:HGNC Symbol;Acc:...	[more]
RAE1	3.508e-34	52.17	ribonucleic acid export 1 [Source:HGNC Symbol;Acc:...	[more]
BUB3	1.624e-12	33.33	BUB3 mitotic checkpoint protein [Source:HGNC Symbo...	[more]

BLAST of SMED30002068 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3


Match Name	E-value	Identity	Description
rae-1	1.387e-43	50.00	mRNA export factor rae-1 [Source:UniProtKB/Swiss-...	[more]
rae-1	1.387e-43	50.00	mRNA export factor rae-1 [Source:UniProtKB/Swiss-...	[more]
bub-3	1.791e-9	31.86	Mitotic checkpoint protein bub-3 [Source:UniProtK...	[more]

BLAST of SMED30002068 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Rae1	4.381e-50	55.32	gene:FBgn0034646 transcript:FBtr0071683	[more]
CG12782	7.869e-25	37.12	gene:FBgn0034838 transcript:FBtr0072048	[more]
Bub3	1.735e-11	39.24	gene:FBgn0025457 transcript:FBtr0339148	[more]
Bub3	1.735e-11	39.24	gene:FBgn0025457 transcript:FBtr0085465	[more]

BLAST of SMED30002068 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
rae1	6.877e-43	51.08	ribonucleic acid export 1 [Source:NCBI gene;Acc:39...	[more]
rae1	7.172e-43	51.08	ribonucleic acid export 1 [Source:NCBI gene;Acc:39...	[more]
bub3	5.898e-13	32.58	BUB3 mitotic checkpoint protein [Source:ZFIN;Acc:Z...	[more]
bub3	6.320e-13	32.58	BUB3 mitotic checkpoint protein [Source:ZFIN;Acc:Z...	[more]

BLAST of SMED30002068 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4


Match Name	E-value	Identity	Description
bub3	1.671e-12	31.06	BUB3 mitotic checkpoint protein [Source:NCBI gene;...	[more]
bub3	1.902e-12	31.06	BUB3 mitotic checkpoint protein [Source:NCBI gene;...	[more]
bub3	3.677e-12	31.30	BUB3 mitotic checkpoint protein [Source:NCBI gene;...	[more]
bub3	4.015e-12	31.30	BUB3 mitotic checkpoint protein [Source:NCBI gene;...	[more]

BLAST of SMED30002068 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Rae1	3.296e-42	50.36	ribonucleic acid export 1 [Source:MGI Symbol;Acc:M...	[more]
Bub3	1.054e-12	33.33	BUB3 mitotic checkpoint protein [Source:MGI Symbol...	[more]
Bub3	1.197e-12	33.33	BUB3 mitotic checkpoint protein [Source:MGI Symbol...	[more]
Bub3	5.124e-8	38.24	BUB3 mitotic checkpoint protein [Source:MGI Symbol...	[more]

BLAST of SMED30002068 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q93454\|RAE1_CAEEL	1.764e-42	50.00	mRNA export factor rae-1 OS=Caenorhabditis elegans...	[more]
sp\|Q7ZWF0\|RAE1L_DANRE	5.191e-42	51.08	mRNA export factor OS=Danio rerio OX=7955 GN=rae1 ...	[more]
sp\|Q3SWS8\|RAE1L_RAT	9.837e-42	51.08	mRNA export factor OS=Rattus norvegicus OX=10116 G...	[more]
sp\|Q4R6D2\|RAE1L_MACFA	1.572e-41	50.36	mRNA export factor OS=Macaca fascicularis OX=9541 ...	[more]
sp\|Q5RF99\|RAEL1_PONAB	1.588e-41	50.36	mRNA export factor OS=Pongo abelii OX=9601 GN=RAE1...	[more]

BLAST of SMED30002068 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
B4G9Y3	9.347e-49	56.03	GL11275 OS=Drosophila persimilis OX=7234 GN=Dper\G...	[more]
A0A3B0JQZ5	1.287e-48	56.03	Blast:mRNA export factor OS=Drosophila guanche OX=...	[more]
A0A1W4VRB5	1.939e-47	54.61	mRNA export factor OS=Drosophila ficusphila OX=300...	[more]
A0A2H1BWE1	2.120e-47	50.00	Nucleoporin GLE2 domain protein OS=Fasciola hepati...	[more]
B3MIX8	2.621e-47	53.90	WD_REPEATS_REGION domain-containing protein OS=Dro...	[more]

BLAST of SMED30002068 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2


Match Name	E-value	Identity	Description
rae1	1.861e-42	50.36	ribonucleic acid export 1 [Source:NCBI gene;Acc:10...	[more]
bub3	7.775e-12	40.51	BUB3 mitotic checkpoint protein [Source:NCBI gene;...	[more]

BLAST of SMED30002068 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2


Match Name	E-value	Identity	Description
ENSPMAT00000007594.1	2.662e-44	50.72	pep scaffold:Pmarinus_7.0:GL477618:2658:11743:-1 g...	[more]
bub3	1.033e-10	31.82	BUB3 mitotic checkpoint protein [Source:ZFIN;Acc:Z...	[more]

BLAST of SMED30002068 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2


Match Name	E-value	Identity	Description
GLE2	4.764e-26	42.74	RNA export factor associated with the nuclear pore...	[more]
BUB3	5.160e-11	29.57	Kinetochore checkpoint WD40 repeat protein; locali...	[more]

BLAST of SMED30002068 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO47476	1.502e-48	50.71	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO43356	1.117e-12	43.04	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SMED30002068 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4


Match Name	E-value	Identity	Description
rae1	2.346e-43	50.36	ribonucleic acid export 1 [Source:NCBI gene;Acc:10...	[more]
rae1	2.577e-43	50.36	ribonucleic acid export 1 [Source:NCBI gene;Acc:10...	[more]
bub3	7.667e-13	32.06	BUB3 mitotic checkpoint protein [Source:NCBI gene;...	[more]
bub3	7.667e-13	32.06	BUB3 mitotic checkpoint protein [Source:NCBI gene;...	[more]

BLAST of SMED30002068 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3


Match Name	E-value	Identity	Description
SMESG000032008.1	1.042e-101	99.29	SMESG000032008.1	[more]
SMESG000032005.1	4.272e-64	62.50	SMESG000032005.1	[more]
SMESG000016111.1	6.076e-12	30.47	SMESG000016111.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30002068 ID=SMED30002068|Name=SMED30002068|organism=Schmidtea mediterranea sexual|type=transcript|length=461bp
AAAACAAATAAAATTTATTATAAATCTAAATTTCATTTTTTGCAGGTGTC
AAATCGGAATTGCATTCTCTTATAAAAAGTTTAGGTTTCTTATTCACGTC
ATTAAATTCGTGTCCTTTACTCCAGTCGTATCCCATAGCATAAGCAAATA
TGTTTCCTTTGCTATCTATATCGCCAACTGTAACCGGTTGCTGTTCTTGT
GGATCCACTGATTTCAGTCTGGTTCTTGATTCTTTATCCCAATAAGCTAT
TTTTCCATCGCTTCCCATCGTGACAACCGTGTAATGAATTGGATGAATAG
AAATGTCATTCACGGCAAAAATTTCCTGTATAGTTGATGTTGGTGCAGTA
GTTCGGTGGCATTTGAATGTGAACGAATCTTTGGTATTTTCATTCACCAT
CGACTGGATTCCTACTCTGCCTTCAATGGACCCTACCACAAATCCAGCAG
GCTCTTTTGTG

protein sequence of SMED30002068-orf-1

>SMED30002068-orf-1 ID=SMED30002068-orf-1|Name=SMED30002068-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=145bp
TKEPAGFVVGSIEGRVGIQSMVNENTKDSFTFKCHRTTAPTSTIQEIFAV
NDISIHPIHYTVVTMGSDGKIAYWDKESRTRLKSVDPQEQQPVTVGDIDS
KGNIFAYAMGYDWSKGHEFNDVNKKPKLFIRECNSDLTPAKNEI*

Annotated Terms

The following terms have been associated with this transcript: