SMED30002066

Overview
NameSMED30002066
Smed IDSMED30002066
Length (bp)1283
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30002066 (SMED30002066) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30002066 (SMED30002066) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30002066 (SMED30002066) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30002066 (SMED30002066) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30002066

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 10

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30002066SMESG000039067.1 Contig4210GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30002066SMESG000016886.1 SMESG000016875.1 Contig4210GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
pharynxSMED30002066SMESG000016886.1 SMESG000016875.1 dd_Smed_v4_7893_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30002066SMESG000016886.1 SMESG000016875.1 dd_Smed_v4_7893_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30002066SMESG000016886.1 SMESG000016875.1 dd_Smed_v4_7893_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30002066SMESG000016886.1 SMESG000016875.1 dd_Smed_v4_7893_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30002066SMESG000016886.1 SMESG000016875.1 dd_Smed_v4_7893_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30002066SMESG000016886.1 SMESG000016875.1 dd_Smed_v4_7893_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Category 4 cellSMED30002066SMESG000016886.1 SMESG000016875.1 dd_Smed_v4_7893_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
non-ciliated epidermisSMED30002066SMESG000016886.1 SMESG000016875.1 dd_Smed_v4_7893_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30002066 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001683:58615..59894 -6346
Homology
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BLAST of SMED30002066 vs. Planmine SMEST
Match: SMESG000016886.1 (SMESG000016886.1)

HSP 1 Score: 625.165 bits (1611), Expect = 0.000e+0
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 2 
Query:  233 ISFYYFLGSILSAVAFSLEYDCQDRQCFISTNELNEKVFDCKPGVSDANLIQCSFVKHLKKITLTTKNESYIDIDKVSPGAFKRLTNGIEVNKIFINKLRMSSIGSADFDGLMNIAEMQIENPKILDKYTFYSLATTKTFFILTIICSPENNNNSFQDLLLKSSRWRLYSKACNRKRTCEIVNCESDKEATIYKITASNEVAKNDFQLISGICEKNKSCKNPATEKKSTPKPVEIEKVMPSQPVKSAKLNIVKKQRIDRYYDTLLWIVIILTGINSXXXXXXXXXXXXWWRKLSLSATNKKHTIVLEDDDTKYLKLTPYA 1192
            ISFYYFLGSILSAVAFSLEYDCQDRQCFISTNELNEKVFDCKPGVSDANLIQCSFVKHLKKITLTTKNESYIDIDKVSPGAFKRLTNGIEVNKIFINKLRMSSIGSADFDGLMNIAEMQIENPKILDKYTFYSLATTKTFFILTIICSPENNNNSFQDLLLKSSRWRLYSKACNRKRTCEIVNCESDKEATIYKITASNEVAKNDFQLISGICEKNKSCKNPATEKKSTPKPVEIEKVMPSQPVKSAKLNIVKKQRIDRYYDTLLWIVIILTGINSFVILGILVFLIIWWRKLSLSATNKKHTIVLEDDDTKYLKLTPYA
Sbjct:    3 ISFYYFLGSILSAVAFSLEYDCQDRQCFISTNELNEKVFDCKPGVSDANLIQCSFVKHLKKITLTTKNESYIDIDKVSPGAFKRLTNGIEVNKIFINKLRMSSIGSADFDGLMNIAEMQIENPKILDKYTFYSLATTKTFFILTIICSPENNNNSFQDLLLKSSRWRLYSKACNRKRTCEIVNCESDKEATIYKITASNEVAKNDFQLISGICEKNKSCKNPATEKKSTPKPVEIEKVMPSQPVKSAKLNIVKKQRIDRYYDTLLWIVIILTGINSFVILGILVFLIIWWRKLSLSATNKKHTIVLEDDDTKYLKLTPYA 322
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BLAST of SMED30002066 vs. Planmine SMEST
Match: SMESG000016875.1 (SMESG000016875.1)

HSP 1 Score: 625.165 bits (1611), Expect = 0.000e+0
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 2 
Query:  233 ISFYYFLGSILSAVAFSLEYDCQDRQCFISTNELNEKVFDCKPGVSDANLIQCSFVKHLKKITLTTKNESYIDIDKVSPGAFKRLTNGIEVNKIFINKLRMSSIGSADFDGLMNIAEMQIENPKILDKYTFYSLATTKTFFILTIICSPENNNNSFQDLLLKSSRWRLYSKACNRKRTCEIVNCESDKEATIYKITASNEVAKNDFQLISGICEKNKSCKNPATEKKSTPKPVEIEKVMPSQPVKSAKLNIVKKQRIDRYYDTLLWIVIILTGINSXXXXXXXXXXXXWWRKLSLSATNKKHTIVLEDDDTKYLKLTPYA 1192
            ISFYYFLGSILSAVAFSLEYDCQDRQCFISTNELNEKVFDCKPGVSDANLIQCSFVKHLKKITLTTKNESYIDIDKVSPGAFKRLTNGIEVNKIFINKLRMSSIGSADFDGLMNIAEMQIENPKILDKYTFYSLATTKTFFILTIICSPENNNNSFQDLLLKSSRWRLYSKACNRKRTCEIVNCESDKEATIYKITASNEVAKNDFQLISGICEKNKSCKNPATEKKSTPKPVEIEKVMPSQPVKSAKLNIVKKQRIDRYYDTLLWIVIILTGINSFVILGILVFLIIWWRKLSLSATNKKHTIVLEDDDTKYLKLTPYA
Sbjct:    3 ISFYYFLGSILSAVAFSLEYDCQDRQCFISTNELNEKVFDCKPGVSDANLIQCSFVKHLKKITLTTKNESYIDIDKVSPGAFKRLTNGIEVNKIFINKLRMSSIGSADFDGLMNIAEMQIENPKILDKYTFYSLATTKTFFILTIICSPENNNNSFQDLLLKSSRWRLYSKACNRKRTCEIVNCESDKEATIYKITASNEVAKNDFQLISGICEKNKSCKNPATEKKSTPKPVEIEKVMPSQPVKSAKLNIVKKQRIDRYYDTLLWIVIILTGINSFVILGILVFLIIWWRKLSLSATNKKHTIVLEDDDTKYLKLTPYA 322
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BLAST of SMED30002066 vs. Planmine SMEST
Match: SMESG000005085.1 (SMESG000005085.1)

HSP 1 Score: 167.162 bits (422), Expect = 3.895e-48
Identity = 105/305 (34.43%), Postives = 168/305 (55.08%), Query Frame = 2 
Query:  251 LGSILSAVAFSLEYDCQDRQCFISTNELNEKVFDCKPGVSDANLIQCSFVKHLKKITLTTKNESYIDIDKVSPGAFKRLTNGIEVNKIFINKLRMSSIGSADFDGLMNIAEMQIENPKILDKYTFYSLATTKTFFILTIICSPENNNNSFQDLLLKSSRWRLYSKACNRKRTCEIVNCESDKEATIYKITASNEVAKNDFQLISGICEKNKSCKNPATEKK---STPKPVEIEKVMPSQPVKSAKLNIVKKQRIDRYYDTLLWIVIILTGINSXXXXXXXXXXXXWWRKLSLSATNKKHTIVLED 1156
            L  I+    +S    C +R C  + N  NE +FDC  G  D   +QC + K  + +TL+T ++SY+ ID+++PGAF RL +GI + KIFINKL+  S+  +DF  L N++ ++IENP  L   TF ++ + +  F LTI C   N N+SFQ L  ++  WR++++ C+++  C    C   +   I KI+ S       FQL S  C  N SCK           TP+   +++    + V S+  N  K+++ D YYD L+ +++++ GINS  IL I V LI+W R +  S + +  T+ + +
Sbjct:    9 LTLIILICGYSNASKCSNRYCVTTLNANNETIFDCSLGQIDNTTVQCFYNKANQIMTLSTFDDSYMFIDQIAPGAFDRLFSGIVLEKIFINKLQFESLNGSDFMALSNVSSIKIENPIKLSFDTFLTVTSPRKIFYLTISCISGNKNSSFQVLHFRTPMWRIFTEDCHQRLACTHSTCNYARLDNIAKISPSKFYQAFQFQLSSHSCLLNSSCKTIQQANSVNIKTPQRFTVDE--KEKRVTSS--NTEKEEKKDNYYDFLMNVLLVIIGINSVFILIICVILIMWRRSIMASVSTRNRTLRIRN 309
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BLAST of SMED30002066 vs. Planmine SMEST
Match: SMESG000035450.1 (SMESG000035450.1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.398e-13
Identity = 83/315 (26.35%), Postives = 149/315 (47.30%), Query Frame = 2 
Query:  296 CQDRQCFISTNELNEKVFDCKPGVSDANLIQCSFVK---HLKKITLTTKNESYID--IDKVSPGAFKRLTNGI-EVNKIFINKLRMSSIGSADFDGLMNIAEMQIENPKILDKYTFYSLATTKTFFILTIICSPENNNNS-FQDLLLKSSRWRLYSKACNRKRTCEIVNCESD-KEATIY--KITASNEVAKNDFQLISGICEK-NKSCKNPATEKKSTPK-----PVEIEKVMPSQPVKSAKLNI-------VKKQRIDRYYDTLLWIVIILTGINSXXXXXXXXXXXXWWR---KLSLSATNKKHTIVLEDDD 1162
            C+D  CFI T +L+ +V  C   V  AN     F+K    LK+  L  K  +  D  +D +  G FK  +  + E+ ++ I  +++++I  +DF GL  +  + + NP  L++ +F  +  ++ +F L I C+ E N++S    L + S  WR+  + C     C +  C +  +    Y  K    N+  +++  + S  C K N  C  P T    + K     P+++  +  S  + S   +        +KK +   Y  +  + +I++  I S +IL +L+ ++ WWR   K +      KHTIVL+DD+
Sbjct:   30 CEDIDCFIET-DLSARVLGCDYKVLLANKTNLKFLKCEYDLKRKALFIKPLTAGDNSVDGLLTGGFKVFSESLKEITELHIPHVKINNISRSDFVGLEKLRGLTLMNPGNLEEDSFLDIINSE-YFQLYIYCNNEKNHSSGISKLRISSKSWRIVLRDCRYSFGCNLGTCVNGVRIGNEYQVKFQLRNKSPESESVIRSSTCLKSNIHCVKPTTTMWPSSKSDMIIPLQVSTLEISSTISSKVRSYKGFTEEKIKKLKSAEY--SYGYKIILVLSIVSCMILIVLIIMVGWWRQRQKRNRKPCRGKHTIVLKDDN 340
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BLAST of SMED30002066 vs. Planmine SMEST
Match: SMESG000035432.1 (SMESG000035432.1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.735e-8
Identity = 37/172 (21.51%), Postives = 81/172 (47.09%), Query Frame = 2 
Query:  296 CQDRQCFISTNELNEKVFDCKPGVSDANLIQCSFVKHLKKITLTTKNESYIDIDKVSPGAFKRLTNGI-EVNKIFINKLRMSSIGSADFDGLMNIAEMQIENPKILDKYTFYSLATTKTFFILTIICSPENNNNSFQDLLLKSSRWRLYSKACNRKRTCEIVNCESDKEATI 808
            C D +C++      + V   +     +   +C + +  K + L  K+     +DK + G F+ +   + ++  + IN +++  I  +DF  L N   +++  P  +D+ +F  +    +FF +++ C+ +++N  F+   L+  +WR+Y   CN +  C +V      E  I
Sbjct:   24 CGDLECYVDRISNTQYVNCSREHDPHSKTFECQYNEDEKSLKLKNKDHEVKSVDKFASGLFENIQKDLGKIKDLSINYIQVKYIKKSDFLTLFNARYLEMSIPMEIDEDSF--IPFNSSFFEISMKCNNDSSNLQFK---LQIEKWRIYLHYCNYRAACSLVRSGEKYEYNI 190
The following BLAST results are available for this feature:
BLAST of SMED30002066 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002066 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002066 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002066 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002066 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002066 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002066 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002066 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002066 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002066 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002066 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002066 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002066 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30002066 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000016886.10.000e+0100.00SMESG000016886.1[more]
SMESG000016875.10.000e+0100.00SMESG000016875.1[more]
SMESG000005085.13.895e-4834.43SMESG000005085.1[more]
SMESG000035450.11.398e-1326.35SMESG000035450.1[more]
SMESG000035432.13.735e-821.51SMESG000035432.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30002066 ID=SMED30002066|Name=SMED30002066|organism=Schmidtea mediterranea sexual|type=transcript|length=1283bp
CACACCTGCAACATTGACACACATCAACATCAATCTCGAGATGGATTACA
CACAAACGTCTAATTAAAAATATGCGTGTGTGTATAGAGTAATATTTTAA
GTCTATTGTTTTTTCAGCACACTATTAATGACAAATATGAATTATAAAAT
TGTTGATTGTTGTTTGGCGATTCATTTTTGGGGTTTATTTTAATTCGTTA
AACAAAAAAAAAATCAAAAAAAGGCTATGAAGATTTCGTTCTATTATTTT
CTTGGTTCAATTCTATCAGCTGTTGCATTCAGTTTGGAATACGATTGCCA
AGACAGACAATGTTTCATTTCGACAAATGAACTAAATGAAAAAGTATTCG
ATTGTAAGCCGGGAGTATCTGATGCCAATTTGATACAATGTTCATTTGTG
AAGCATCTGAAAAAAATAACTCTTACCACCAAAAATGAATCTTATATTGA
CATTGATAAAGTCTCACCTGGAGCTTTCAAACGATTGACAAACGGAATTG
AAGTGAACAAAATCTTCATTAATAAATTGCGAATGTCTTCAATTGGCAGT
GCCGATTTCGATGGATTAATGAATATTGCTGAGATGCAAATTGAAAATCC
GAAAATCCTTGACAAGTACACTTTTTATTCACTGGCTACAACGAAAACGT
TTTTCATTTTAACAATTATCTGTTCACCAGAAAACAATAATAACTCATTT
CAAGATTTATTATTGAAATCCAGTCGATGGAGATTGTATTCAAAGGCTTG
CAACAGAAAACGGACTTGTGAGATTGTGAATTGCGAGTCCGACAAAGAAG
CGACAATCTACAAAATCACCGCATCGAATGAAGTAGCGAAAAATGATTTT
CAGCTTATTTCCGGCATTTGCGAGAAAAATAAATCCTGTAAAAATCCGGC
AACCGAAAAGAAAAGTACCCCAAAACCTGTGGAAATTGAAAAGGTAATGC
CTAGTCAGCCGGTGAAAAGTGCCAAATTAAACATTGTCAAAAAGCAGAGA
ATAGATCGTTATTATGATACTTTATTGTGGATTGTTATCATTTTAACCGG
AATCAACTCGTTTGTCATTTTGGGAATTTTAGTTTTTCTCATAATCTGGT
GGAGAAAACTATCTTTGTCTGCTACAAACAAGAAACATACAATAGTTTTA
GAAGATGACGATACCAAATATCTGAAACTCACGCCATATGCCTAAGAAAA
TTTATTACAAAATTTTTTTTTACAGAGTTTTAATTTGTACTTTTATTATT
TGAAAATAAATGTTGGTTTTTTTAAAAAAAAGA
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protein sequence of SMED30002066-orf-1

>SMED30002066-orf-1 ID=SMED30002066-orf-1|Name=SMED30002066-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=323bp
MKISFYYFLGSILSAVAFSLEYDCQDRQCFISTNELNEKVFDCKPGVSDA
NLIQCSFVKHLKKITLTTKNESYIDIDKVSPGAFKRLTNGIEVNKIFINK
LRMSSIGSADFDGLMNIAEMQIENPKILDKYTFYSLATTKTFFILTIICS
PENNNNSFQDLLLKSSRWRLYSKACNRKRTCEIVNCESDKEATIYKITAS
NEVAKNDFQLISGICEKNKSCKNPATEKKSTPKPVEIEKVMPSQPVKSAK
LNIVKKQRIDRYYDTLLWIVIILTGINSFVILGILVFLIIWWRKLSLSAT
NKKHTIVLEDDDTKYLKLTPYA*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000018Category 4 cell
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
PLANA:0002032epidermal cell
PLANA:0002063non-ciliated epidermis
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.608
NoneNo IPR availableTMHMMTMhelixcoord: 268..290