Rab-like protein 3
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30001953 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 13
Homology
BLAST of Rab-like protein 3 vs. Ensembl Human
Match: RABL3 (RAB, member of RAS oncogene family like 3 [Source:HGNC Symbol;Acc:HGNC:18072]) HSP 1 Score: 56.6102 bits (135), Expect = 8.463e-10 Identity = 23/49 (46.94%), Postives = 41/49 (83.67%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKVIY 161 M++ +VK++V GDSGVGK++LV++LC + V+ NP+WT+G V+++V++ Sbjct: 1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVLF 49
BLAST of Rab-like protein 3 vs. Ensembl Human
Match: RABL3 (RAB, member of RAS oncogene family like 3 [Source:HGNC Symbol;Acc:HGNC:18072]) HSP 1 Score: 58.5362 bits (140), Expect = 1.090e-9 Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M++ +VK++V GDSGVGK++LV++LC + V+ NP+WT+G V+++V Sbjct: 1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
BLAST of Rab-like protein 3 vs. Ensembl Human
Match: RABL3 (RAB, member of RAS oncogene family like 3 [Source:HGNC Symbol;Acc:HGNC:18072]) HSP 1 Score: 58.9214 bits (141), Expect = 1.097e-9 Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M++ +VK++V GDSGVGK++LV++LC + V+ NP+WT+G V+++V Sbjct: 1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
BLAST of Rab-like protein 3 vs. Ensembl Human
Match: RABL3 (RAB, member of RAS oncogene family like 3 [Source:HGNC Symbol;Acc:HGNC:18072]) HSP 1 Score: 54.6842 bits (130), Expect = 3.429e-9 Identity = 22/48 (45.83%), Postives = 40/48 (83.33%), Query Frame = 3 Query: 18 SNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKVIY 161 ++ +VK++V GDSGVGK++LV++LC + V+ NP+WT+G V+++V++ Sbjct: 2 ASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVLF 49
BLAST of Rab-like protein 3 vs. Ensembl Human
Match: RABL3 (RAB, member of RAS oncogene family like 3 [Source:HGNC Symbol;Acc:HGNC:18072]) HSP 1 Score: 58.9214 bits (141), Expect = 4.193e-9 Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M++ +VK++V GDSGVGK++LV++LC + V+ NP+WT+G V+++V Sbjct: 1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
BLAST of Rab-like protein 3 vs. Ensembl Fly
Match: CG4789 (gene:FBgn0030792 transcript:FBtr0074333) HSP 1 Score: 50.447 bits (119), Expect = 2.781e-6 Identity = 19/50 (38.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKVIYF 164 M+ +V+I+V GDSGVGKT+L +++ ++ + P WT+G +++K+ F Sbjct: 1 MAMNNRVRIVVVGDSGVGKTSLTHLITHNEALIRPGWTVGCNIQVKMHPF 50
BLAST of Rab-like protein 3 vs. Ensembl Zebrafish
Match: rabl3 (RAB, member of RAS oncogene family-like 3 [Source:NCBI gene;Acc:403048]) HSP 1 Score: 58.9214 bits (141), Expect = 6.830e-10 Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M++ +VK++V GDSGVGK++LV++LC + V+ NP+WT+G V+++V Sbjct: 1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
BLAST of Rab-like protein 3 vs. Ensembl Zebrafish
Match: rabl3 (RAB, member of RAS oncogene family-like 3 [Source:NCBI gene;Acc:403048]) HSP 1 Score: 59.3066 bits (142), Expect = 3.024e-9 Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M++ +VK++V GDSGVGK++LV++LC + V+ NP+WT+G V+++V Sbjct: 1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
BLAST of Rab-like protein 3 vs. Ensembl Zebrafish
Match: rabl3 (RAB, member of RAS oncogene family-like 3 [Source:NCBI gene;Acc:403048]) HSP 1 Score: 59.3066 bits (142), Expect = 3.024e-9 Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M++ +VK++V GDSGVGK++LV++LC + V+ NP+WT+G V+++V Sbjct: 1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
BLAST of Rab-like protein 3 vs. Ensembl Mouse
Match: Rabl3 (RAB, member RAS oncogene family-like 3 [Source:MGI Symbol;Acc:MGI:1914907]) HSP 1 Score: 60.8474 bits (146), Expect = 1.201e-10 Identity = 24/47 (51.06%), Postives = 40/47 (85.11%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M++ +VK++V GDSGVGK++LV++LC++ V+ NP+WT+G V+I+V Sbjct: 1 MASLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRV 47
BLAST of Rab-like protein 3 vs. Ensembl Mouse
Match: Rabl3 (RAB, member RAS oncogene family-like 3 [Source:MGI Symbol;Acc:MGI:1914907]) HSP 1 Score: 61.6178 bits (148), Expect = 6.180e-10 Identity = 24/47 (51.06%), Postives = 40/47 (85.11%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M++ +VK++V GDSGVGK++LV++LC++ V+ NP+WT+G V+I+V Sbjct: 1 MASLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRV 47
BLAST of Rab-like protein 3 vs. UniProt/SwissProt
Match: sp|Q9D4V7|RABL3_MOUSE (Rab-like protein 3 OS=Mus musculus OX=10090 GN=Rabl3 PE=1 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 4.323e-9 Identity = 24/47 (51.06%), Postives = 40/47 (85.11%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M++ +VK++V GDSGVGK++LV++LC++ V+ NP+WT+G V+I+V Sbjct: 1 MASLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRV 47
BLAST of Rab-like protein 3 vs. UniProt/SwissProt
Match: sp|Q5ZKR4|RABL3_CHICK (Rab-like protein 3 OS=Gallus gallus OX=9031 GN=RABL3 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 2.151e-8 Identity = 22/47 (46.81%), Postives = 39/47 (82.98%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M+ +VK++V GDSGVGK++LV++LC++ V+ NP+WT+G V++++ Sbjct: 1 MAALDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDVRI 47
BLAST of Rab-like protein 3 vs. UniProt/SwissProt
Match: sp|Q6TNS7|RABL3_DANRE (Rab-like protein 3 OS=Danio rerio OX=7955 GN=rabl3 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 2.283e-8 Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M++ +VK++V GDSGVGK++LV++LC + V+ NP+WT+G V+++V Sbjct: 1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
BLAST of Rab-like protein 3 vs. UniProt/SwissProt
Match: sp|Q5HYI8|RABL3_HUMAN (Rab-like protein 3 OS=Homo sapiens OX=9606 GN=RABL3 PE=1 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 2.783e-8 Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M++ +VK++V GDSGVGK++LV++LC + V+ NP+WT+G V+++V Sbjct: 1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
BLAST of Rab-like protein 3 vs. UniProt/SwissProt
Match: sp|Q32LJ6|RABL3_BOVIN (Rab-like protein 3 OS=Bos taurus OX=9913 GN=RABL3 PE=2 SV=2) HSP 1 Score: 58.9214 bits (141), Expect = 2.970e-8 Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M++ +VK++V GDSGVGK++LV++LC + V+ NP+WT+G V+++V Sbjct: 1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
BLAST of Rab-like protein 3 vs. TrEMBL
Match: A0A3S1APW6 (DDE_Tnp_IS1595 domain-containing protein (Fragment) OS=Elysia chlorotica OX=188477 GN=EGW08_023678 PE=4 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 2.071e-14 Identity = 51/143 (35.66%), Postives = 72/143 (50.35%), Query Frame = -1 Query: 603 YIQLNVSEIGGFDINGYAIVVKIDE*IF---------------------------------P*KVSRVNLA*WLMSYYILQRTDIISDDWAVYRAISRLSNDIYMHSIFIHDQHFVDPNYSDVHTQVIENLWMRAILKLIRQF 932 Y+ N EIGGFD NG +VV+IDE +F P + +R L ++ +IL + I+SD WA Y I ++ IY H + +H+++FVDP+ +VHTQ IEN WMRA K+ RQF Sbjct: 148 YLDRNPQEIGGFDENGEQLVVEIDESLFFHRKYHRGEPRGGGHWVFGGIERQSGKCFMVEVPDR-TRATLE-PIIQEFILPGSHIMSDGWAAYGNIPQIGGGIYTHDVIVHERNFVDPDDPNVHTQNIENTWMRAKRKIKRQF 288
BLAST of Rab-like protein 3 vs. TrEMBL
Match: A0A0L8GYE4 (DDE_Tnp_IS1595 domain-containing protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22025842mg PE=4 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.137e-13 Identity = 55/149 (36.91%), Postives = 72/149 (48.32%), Query Frame = -1 Query: 603 KNLISAAYVSVKSISD--------LGRYIQLNVSEIGGFDINGYAIVVKIDE*IFP*KVSRVNL---A*W---------LMSYYILQRTDIISDDWAVYRAISRLSNDIYMHSIFIHDQHFVDPNYSDVHTQVIENLWMRAILKLIRQF 989 K+++ +S S+ D ++ N EIGG D NG +VV+IDE F + L W L+ +IL T IISD WA Y I+ L Y H + +H HFVDPN + +HT IENLWMR KL QF Sbjct: 3 KHIVDECSLSHTSVVDWSNFCCKVCDEWLWQNPVEIGGVDNNGQPLVVEIDESKFFHRKYHRRLWIPGHWVFGERTLLELIQRWILPGTHIISDRWASYANITNLGGCTYTHEVTVHGDHFVDPNDNGIHTHNIENLWMRLKRKLWWQF 151
BLAST of Rab-like protein 3 vs. TrEMBL
Match: A0A0L8FW94 (DDE_Tnp_IS1595 domain-containing protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22006020mg PE=4 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.228e-13 Identity = 51/126 (40.48%), Postives = 66/126 (52.38%), Query Frame = -1 Query: 603 YIQLNVSEIGGFDINGYAIVVKIDE*IFP*KVSRVNLA*WLMSYY----------------ILQRTDIISDDWAVYRAISRLSNDIYMHSIFIHDQHFVDPNYSDVHTQVIENLWMRAILKLIRQF 932 +++ N EIGG D NG +VV+IDE F + L W ++ IL T IISD WA Y I+ L IY H + +H HFVDPN +++HTQ IENLWMR KL Q+ Sbjct: 147 WLRQNPMEIGGVDNNGQPLVVEIDESKFFHRTYHRGL--WRPGHWVFGGVERDSGKCFLVEILPGTHIISDRWASYANITNLGGCIYTHEVIVHGDHFVDPNDNEIHTQNIENLWMRLKRKLRWQY 270
BLAST of Rab-like protein 3 vs. TrEMBL
Match: A0A0L8GWY5 (DDE_Tnp_IS1595 domain-containing protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22026647mg PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.393e-12 Identity = 52/138 (37.68%), Postives = 70/138 (50.72%), Query Frame = -1 Query: 603 ISAAYVSVKSISDLGR-----YIQLNVSEIGGFDINGYAIVVKIDE*IFP*KV-------SRVNLA*WLMSYYILQRTDIISDDWAVYRAISRLSNDIYMHSIFIHDQHFVDPNYSDVHTQVIENLWMRAILKLIRQF 980 S + SV S+ R +++ N EIGG D G +VV+I+E F + + L+ L+ +IL T IISD WA Y L Y H + +H HFV+PN + +HTQ IENLWMR KL QF Sbjct: 126 CSVCHTSVVDWSNFCREVCDEWLRQNSVEIGGVDSKGQPLVVEIEESKFFHRKYHQVLDRTERTLS-ELIQRWILPGTHIISDGWASYANTGNLGGCTYTHEVIVHGDHFVEPNDNGIHTQNIENLWMRLKRKLRWQF 262
BLAST of Rab-like protein 3 vs. TrEMBL
Match: A0A0L8HS33 (DDE_Tnp_IS1595 domain-containing protein (Fragment) OS=Octopus bimaculoides OX=37653 GN=OCBIM_22007566mg PE=4 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 9.093e-11 Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = -1 Query: 585 TDIISDDWAVYRAISRLSNDIYMHSIFIHDQHFVDPNYSDVHTQVIENLWMRAILKLIRQFWHKFCT 785 T IISD WA Y I+ L Y H + +H+ HFVDPN + +HTQ IENLWMR L R+ W +F T Sbjct: 1 THIISDGWASYANIANLGGCTYTHKVIVHEDHFVDPNDNGIHTQNIENLWMR----LKRKLWWQFGT 63
BLAST of Rab-like protein 3 vs. Ensembl Cavefish
Match: rabl3 (RAB, member of RAS oncogene family like 3 [Source:NCBI gene;Acc:103041457]) HSP 1 Score: 57.3806 bits (137), Expect = 1.269e-8 Identity = 22/47 (46.81%), Postives = 39/47 (82.98%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M++ +VK++V GDSGVGK++LV+++C + V+ NP+WT+G V+++V Sbjct: 1 MASLDRVKVLVLGDSGVGKSSLVHLVCQNQVLGNPSWTVGCSVDVRV 47
BLAST of Rab-like protein 3 vs. Ensembl Nematostella
Match: EDO28311 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T6U3]) HSP 1 Score: 55.4546 bits (132), Expect = 1.640e-9 Identity = 23/47 (48.94%), Postives = 37/47 (78.72%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M+ +KV+I V GDSGVGKT+LV+++C++ +++ WTIG VE+K+ Sbjct: 1 MAAVEKVRIAVVGDSGVGKTSLVHLICHEESISSAAWTIGCTVEVKL 47
BLAST of Rab-like protein 3 vs. Ensembl Nematostella
Match: EDO47568 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RMA7]) HSP 1 Score: 55.0694 bits (131), Expect = 2.498e-8 Identity = 23/47 (48.94%), Postives = 37/47 (78.72%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M+ +KV+I V GDSGVGKT+LV+++C++ +++ WTIG VE+K+ Sbjct: 1 MAAVEKVRIAVVGDSGVGKTSLVHLICHEESISSAAWTIGCTVEVKL 47
BLAST of Rab-like protein 3 vs. Ensembl Nematostella
Match: EDO44629 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVE9]) HSP 1 Score: 49.2914 bits (116), Expect = 4.556e-7 Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = -1 Query: 630 ILQRTDIISDDWAVYRAI-SRLSNDIYMHSIFIHDQHFVDPNYSDVHTQVIENLWMR 797 +L + + SDDWA YR + +RL N + + +H +FVDP + VHTQ IE+LW R Sbjct: 71 LLPGSTVHSDDWAAYRRLQARLPNVVANQGVVVHRYNFVDP-ITGVHTQNIESLWSR 126
BLAST of Rab-like protein 3 vs. Ensembl Nematostella
Match: EDO33828 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SR40]) HSP 1 Score: 49.2914 bits (116), Expect = 5.739e-7 Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = -1 Query: 630 ILQRTDIISDDWAVYRAI-SRLSNDIYMHSIFIHDQHFVDPNYSDVHTQVIENLWMR 797 +L + + SDDWA YR + +RL N + + +H +FVDP + VHTQ IE+LW R Sbjct: 71 LLPGSTVHSDDWAAYRRLQARLPNIVANQGVVVHRYNFVDP-ITGVHTQNIESLWSR 126
BLAST of Rab-like protein 3 vs. Ensembl Nematostella
Match: EDO40653 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S6I3]) HSP 1 Score: 45.8246 bits (107), Expect = 2.160e-6 Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = -1 Query: 630 ILQRTDIISDDWAVYRAI-SRLSNDIYMHSIFIHDQHFVDPNYSDVHTQVIENLWMR 797 +L + + +DDWA YR + +RL N + H + +H +FVDP + VHTQ +E+ W R Sbjct: 1 LLPGSTVHTDDWAAYRQLQARLPNVVADHGVVVHRYNFVDP-ITGVHTQHVESAWNR 56
BLAST of Rab-like protein 3 vs. Ensembl Medaka
Match: rabl3 (RAB, member of RAS oncogene family like 3 [Source:NCBI gene;Acc:101173619]) HSP 1 Score: 58.9214 bits (141), Expect = 3.837e-9 Identity = 22/47 (46.81%), Postives = 39/47 (82.98%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M++ +VK++V GDSGVGK++LV++LC + V+ NP+WT+G V++++ Sbjct: 1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRI 47
BLAST of Rab-like protein 3 vs. Ensembl Medaka
Match: rabl3 (RAB, member of RAS oncogene family like 3 [Source:NCBI gene;Acc:101173619]) HSP 1 Score: 58.9214 bits (141), Expect = 4.202e-9 Identity = 22/47 (46.81%), Postives = 39/47 (82.98%), Query Frame = 3 Query: 15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155 M++ +VK++V GDSGVGK++LV++LC + V+ NP+WT+G V++++ Sbjct: 1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRI 47
BLAST of Rab-like protein 3 vs. Planmine SMEST
Match: SMESG000053907.1 (SMESG000053907.1) HSP 1 Score: 248.44 bits (633), Expect = 1.242e-79 Identity = 132/166 (79.52%), Postives = 149/166 (89.76%), Query Frame = 1 Query: 1855 MCNILNKESYDDCLHVLNDEKYEYITNNDNFKCLPDTEFSGEWCKDESRFDDVGEILEYVCNINNVNKDNLIKYNKLNGRLNVTILISNSKLCCLIDTGAKISVIGESVLDNIVMFSIEICLVKLRCANELPVSIVGKVNVSIQVLGTKETRMIEFIVAKEISLNL 2352 M NILN+ESYDDCLHVLNDEKYEYITNNDN+KCLPD+EF +WCKDE+RFDDV EILEYVCNINNVN DNLIKYNKLNGR NVTILI+NS+LCCL+DTGA I +I ES+LDNI F+IE CLVKLRCA E PV IVGKVNV++Q++GT++TRMIEFIVAKEIS L Sbjct: 1 MSNILNRESYDDCLHVLNDEKYEYITNNDNYKCLPDSEFYSKWCKDETRFDDVREILEYVCNINNVNNDNLIKYNKLNGRPNVTILINNSELCCLLDTGANICMIDESILDNIGKFNIEKCLVKLRCAIESPVLIVGKVNVAVQIVGTRQTRMIEFIVAKEISPKL 166 HSP 2 Score: 69.3218 bits (168), Expect = 1.242e-79 Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 2 Query: 2351 LKKFDIMLNMXXXXXXXDEKIAGIMHLKEPSESTQCKDINIKELCRKYDS 2500 L+KF+IML+ KS SKKDE IAGIMHLK PSES QCKD+N++ELC KY+S Sbjct: 173 LRKFNIMLHTKSSLSKKDENIAGIMHLKSPSESNQCKDMNVRELCSKYES 222
BLAST of Rab-like protein 3 vs. Planmine SMEST
Match: SMESG000033246.1 (SMESG000033246.1) HSP 1 Score: 200.675 bits (509), Expect = 3.244e-64 Identity = 100/125 (80.00%), Postives = 112/125 (89.60%), Query Frame = 1 Query: 1978 EWCKDESRFDDVGEILEYVCNINNVNKDNLIKYNKLNGRLNVTILISNSKLCCLIDTGAKISVIGESVLDNIVMFSIEICLVKLRCANELPVSIVGKVNVSIQVLGTKETRMIEFIVAKEISLNL 2352 EW KDESRFDDVGEILEY CNINNVN DNLIKYNKLNGR +VTILI+NS+LCCL+DTGAKISVI ESVL+NI F+IE LVKLRCANE PVSIV KVN+++Q++GT+ETRMIEFIVAKEIS L Sbjct: 255 EWSKDESRFDDVGEILEYACNINNVNDDNLIKYNKLNGRPSVTILINNSELCCLLDTGAKISVIDESVLNNIGKFNIEKLLVKLRCANESPVSIVPKVNIAVQIVGTRETRMIEFIVAKEISPKL 379 HSP 2 Score: 65.855 bits (159), Expect = 3.244e-64 Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 2 Query: 2348 ILKKFDIMLNMXXXXXXXDEKIAGIMHLKEPSESTQCKDINIKELCRK 2491 LKKFDIMLNM+SK SK DE IAGIMHLK+ S+S QC+D N++ELCR+ Sbjct: 385 FLKKFDIMLNMESKLSKNDENIAGIMHLKKSSKSNQCQDSNVRELCRR 432 HSP 3 Score: 178.718 bits (452), Expect = 9.760e-55 Identity = 100/164 (60.98%), Postives = 113/164 (68.90%), Query Frame = 2 Query: 1382 NRIKMHEKVNKELNRNNSSMAT----TTFRTDIQPANLDKNREYPKK*HHFNKQVVQRNSQPKFKCWACFEEGHRS-ECPNVKCHH---LSHFKHQCSQRTESWRDVRENDQ*YARAKSLGNNRNKRD*QYQRPVAAMDDDKEEHGNQYQNGYAPPRE-VIGAL 1846 NRIKMH K K N M + R + + +NRE+ KK +FN ++VQRN+QPKFKCW CFEEGHR ECPNVKCHH HFKH+C QRTE W +VRENDQ Y RAK GN+RN RD QYQRPVAAMDDD+EEHGNQY NGY RE VIGAL Sbjct: 92 NRIKMHAKSEKPQNIPAQPMPQRYNYVSNRFTVGESR--QNREHLKKQQNFNNKIVQRNNQPKFKCWVCFEEGHRRFECPNVKCHHCHKAEHFKHRCFQRTEKWIEVRENDQEYKRAKFQGNDRNNRDRQYQRPVAAMDDDEEEHGNQYPNGYDQLREKVIGAL 253 HSP 4 Score: 55.8398 bits (133), Expect = 9.760e-55 Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 3 Query: 1263 LKHKLNEEELRKFLIFNALGDQDLKKSFNVKQYKLVFEMKTELK 1394 LKH+ NEE L+KFLIFNA+GDQ+LK + +YK VFEMK +K Sbjct: 52 LKHEFNEEVLQKFLIFNAVGDQNLKNDLMLNEYKSVFEMKNRIK 95
BLAST of Rab-like protein 3 vs. Planmine SMEST
Match: SMESG000039117.1 (SMESG000039117.1) HSP 1 Score: 119.398 bits (298), Expect = 4.294e-43 Identity = 61/78 (78.21%), Postives = 69/78 (88.46%), Query Frame = 1 Query: 2119 NSKLCCLIDTGAKISVIGESVLDNIVMFSIEICLVKLRCANELPVSIVGKVNVSIQVLGTKETRMIEFIVAKEISLNL 2352 N +LCCL++TGAKISVI ESVLDNI F+IE CLVKLRCANE PVSIVGKVNV++Q++GT ETRMIEFIV KEISL L Sbjct: 16 NIELCCLLETGAKISVIDESVLDNIGKFNIEKCLVKLRCANESPVSIVGKVNVAVQIVGTSETRMIEFIVDKEISLKL 93 HSP 2 Score: 76.2554 bits (186), Expect = 4.294e-43 Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 2 Query: 2351 LKKFDIMLNMXXXXXXXDEKIAGIMHLKEPSESTQCKDINIKELCRKYDSILI 2509 L+KFDIMLNMKS S DE IA IMHLKE SES QC+D N++ELCRKYDSI I Sbjct: 100 LRKFDIMLNMKSSLSTNDENIARIMHLKESSESNQCQDSNVRELCRKYDSIFI 152
BLAST of Rab-like protein 3 vs. Planmine SMEST
Match: SMESG000027262.1 (SMESG000027262.1) HSP 1 Score: 135.191 bits (339), Expect = 5.812e-37 Identity = 73/102 (71.57%), Postives = 79/102 (77.45%), Query Frame = 2 Query: 1487 KNREYPKK*HHFNKQVVQRNSQPKFKCWACFEEGHR-SECPNVKCHH---LSHFKHQCSQRTESWRDVRENDQ*YARAKSLGNNRNKRD*QYQRPVAAMDDD 1780 +NREYPKK H+FNKQVVQR SQPKFK WA FEEGHR SEC NVKCHH HFKHQC QRTE R+VRENDQ YAR K GN+RN RD QYQRPVA ++ Sbjct: 19 QNREYPKKQHNFNKQVVQRISQPKFKFWAYFEEGHRRSECSNVKCHHCHKAGHFKHQCFQRTEKRREVRENDQEYARVKFQGNDRNNRDRQYQRPVAKRNNS 120
BLAST of Rab-like protein 3 vs. Planmine SMEST
Match: SMESG000060790.1 (SMESG000060790.1) HSP 1 Score: 115.546 bits (288), Expect = 4.931e-30 Identity = 58/75 (77.33%), Postives = 62/75 (82.67%), Query Frame = 2 Query: 1628 SHFKHQCSQRTESWRDVRENDQ*YARAKSLGNNRNKRD*QYQRPVAAMDDDKEEHGNQYQNGYAPPREV-IGALQ 1849 HFKHQC +RTE WRDVRENDQ ARAK GN+R+ RD QYQRPVAAMDDD+EEHGNQY NGY PPRE IGALQ Sbjct: 46 GHFKHQCFKRTEKWRDVRENDQEEARAKFQGNDRSNRDRQYQRPVAAMDDDEEEHGNQYPNGYVPPREEGIGALQ 120 The following BLAST results are available for this feature:
BLAST of Rab-like protein 3 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Rab-like protein 3 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Rab-like protein 3 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of Rab-like protein 3 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of Rab-like protein 3 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Rab-like protein 3 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of Rab-like protein 3 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Rab-like protein 3 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Rab-like protein 3 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Rab-like protein 3 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Rab-like protein 3 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Rab-like protein 3 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of Rab-like protein 3 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of Rab-like protein 3 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30001953 ID=SMED30001953|Name=Rab-like protein 3|organism=Schmidtea mediterranea sexual|type=transcript|length=2543bpback to top protein sequence of SMED30001953-orf-1 >SMED30001953-orf-1 ID=SMED30001953-orf-1|Name=SMED30001953-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=184bp MCNILNKESYDDCLHVLNDEKYEYITNNDNFKCLPDTEFSGEWCKDESRFback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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