Rab-like protein 3

Overview
NameRab-like protein 3
Smed IDSMED30001953
Length (bp)2543
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Rab-like protein 3 (SMED30001953) t-SNE clustered cells

Violin plots show distribution of expression levels for Rab-like protein 3 (SMED30001953) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Rab-like protein 3 (SMED30001953) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Rab-like protein 3 (SMED30001953) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30001953

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 13

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30001953SMESG000018562.1 SmedASXL_018121SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30001953 SmedASXL_018123SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30001953SMESG000023258.1 dd_Smed_v4_3718_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30001953SMESG000023258.1 dd_Smed_v4_3718_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30001953SMESG000023258.1 dd_Smed_v4_3718_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30001953SMESG000023258.1 dd_Smed_v4_3718_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30001953SMESG000023258.1 dd_Smed_v4_3718_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30001953SMESG000023258.1 dd_Smed_v4_3718_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30001953SMESG000018562.1 Contig18865newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30001953SMESG000018562.1 Contig18865uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
neoblastSMED30001953SMESG000023258.1 dd_Smed_v6_3718_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
reproductive organSMED30001953SMESG000041325.1 Contig3765GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30001953SMESG000018562.1 Contig3765GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Human
Match: RABL3 (RAB, member of RAS oncogene family like 3 [Source:HGNC Symbol;Acc:HGNC:18072])

HSP 1 Score: 56.6102 bits (135), Expect = 8.463e-10
Identity = 23/49 (46.94%), Postives = 41/49 (83.67%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKVIY 161
            M++  +VK++V GDSGVGK++LV++LC + V+ NP+WT+G  V+++V++
Sbjct:    1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVLF 49
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Human
Match: RABL3 (RAB, member of RAS oncogene family like 3 [Source:HGNC Symbol;Acc:HGNC:18072])

HSP 1 Score: 58.5362 bits (140), Expect = 1.090e-9
Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M++  +VK++V GDSGVGK++LV++LC + V+ NP+WT+G  V+++V
Sbjct:    1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Human
Match: RABL3 (RAB, member of RAS oncogene family like 3 [Source:HGNC Symbol;Acc:HGNC:18072])

HSP 1 Score: 58.9214 bits (141), Expect = 1.097e-9
Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M++  +VK++V GDSGVGK++LV++LC + V+ NP+WT+G  V+++V
Sbjct:    1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Human
Match: RABL3 (RAB, member of RAS oncogene family like 3 [Source:HGNC Symbol;Acc:HGNC:18072])

HSP 1 Score: 54.6842 bits (130), Expect = 3.429e-9
Identity = 22/48 (45.83%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:   18 SNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKVIY 161
            ++  +VK++V GDSGVGK++LV++LC + V+ NP+WT+G  V+++V++
Sbjct:    2 ASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVLF 49
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Human
Match: RABL3 (RAB, member of RAS oncogene family like 3 [Source:HGNC Symbol;Acc:HGNC:18072])

HSP 1 Score: 58.9214 bits (141), Expect = 4.193e-9
Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M++  +VK++V GDSGVGK++LV++LC + V+ NP+WT+G  V+++V
Sbjct:    1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Fly
Match: CG4789 (gene:FBgn0030792 transcript:FBtr0074333)

HSP 1 Score: 50.447 bits (119), Expect = 2.781e-6
Identity = 19/50 (38.00%), Postives = 35/50 (70.00%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKVIYF 164
            M+   +V+I+V GDSGVGKT+L +++ ++  +  P WT+G  +++K+  F
Sbjct:    1 MAMNNRVRIVVVGDSGVGKTSLTHLITHNEALIRPGWTVGCNIQVKMHPF 50
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Zebrafish
Match: rabl3 (RAB, member of RAS oncogene family-like 3 [Source:NCBI gene;Acc:403048])

HSP 1 Score: 58.9214 bits (141), Expect = 6.830e-10
Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M++  +VK++V GDSGVGK++LV++LC + V+ NP+WT+G  V+++V
Sbjct:    1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Zebrafish
Match: rabl3 (RAB, member of RAS oncogene family-like 3 [Source:NCBI gene;Acc:403048])

HSP 1 Score: 59.3066 bits (142), Expect = 3.024e-9
Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M++  +VK++V GDSGVGK++LV++LC + V+ NP+WT+G  V+++V
Sbjct:    1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Zebrafish
Match: rabl3 (RAB, member of RAS oncogene family-like 3 [Source:NCBI gene;Acc:403048])

HSP 1 Score: 59.3066 bits (142), Expect = 3.024e-9
Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M++  +VK++V GDSGVGK++LV++LC + V+ NP+WT+G  V+++V
Sbjct:    1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Mouse
Match: Rabl3 (RAB, member RAS oncogene family-like 3 [Source:MGI Symbol;Acc:MGI:1914907])

HSP 1 Score: 60.8474 bits (146), Expect = 1.201e-10
Identity = 24/47 (51.06%), Postives = 40/47 (85.11%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M++  +VK++V GDSGVGK++LV++LC++ V+ NP+WT+G  V+I+V
Sbjct:    1 MASLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRV 47
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Mouse
Match: Rabl3 (RAB, member RAS oncogene family-like 3 [Source:MGI Symbol;Acc:MGI:1914907])

HSP 1 Score: 61.6178 bits (148), Expect = 6.180e-10
Identity = 24/47 (51.06%), Postives = 40/47 (85.11%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M++  +VK++V GDSGVGK++LV++LC++ V+ NP+WT+G  V+I+V
Sbjct:    1 MASLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRV 47
[Close]
BLAST of Rab-like protein 3 vs. UniProt/SwissProt
Match: sp|Q9D4V7|RABL3_MOUSE (Rab-like protein 3 OS=Mus musculus OX=10090 GN=Rabl3 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.323e-9
Identity = 24/47 (51.06%), Postives = 40/47 (85.11%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M++  +VK++V GDSGVGK++LV++LC++ V+ NP+WT+G  V+I+V
Sbjct:    1 MASLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRV 47
[Close]
BLAST of Rab-like protein 3 vs. UniProt/SwissProt
Match: sp|Q5ZKR4|RABL3_CHICK (Rab-like protein 3 OS=Gallus gallus OX=9031 GN=RABL3 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.151e-8
Identity = 22/47 (46.81%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M+   +VK++V GDSGVGK++LV++LC++ V+ NP+WT+G  V++++
Sbjct:    1 MAALDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDVRI 47
[Close]
BLAST of Rab-like protein 3 vs. UniProt/SwissProt
Match: sp|Q6TNS7|RABL3_DANRE (Rab-like protein 3 OS=Danio rerio OX=7955 GN=rabl3 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.283e-8
Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M++  +VK++V GDSGVGK++LV++LC + V+ NP+WT+G  V+++V
Sbjct:    1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
[Close]
BLAST of Rab-like protein 3 vs. UniProt/SwissProt
Match: sp|Q5HYI8|RABL3_HUMAN (Rab-like protein 3 OS=Homo sapiens OX=9606 GN=RABL3 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.783e-8
Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M++  +VK++V GDSGVGK++LV++LC + V+ NP+WT+G  V+++V
Sbjct:    1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
[Close]
BLAST of Rab-like protein 3 vs. UniProt/SwissProt
Match: sp|Q32LJ6|RABL3_BOVIN (Rab-like protein 3 OS=Bos taurus OX=9913 GN=RABL3 PE=2 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 2.970e-8
Identity = 23/47 (48.94%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M++  +VK++V GDSGVGK++LV++LC + V+ NP+WT+G  V+++V
Sbjct:    1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRV 47
[Close]
BLAST of Rab-like protein 3 vs. TrEMBL
Match: A0A3S1APW6 (DDE_Tnp_IS1595 domain-containing protein (Fragment) OS=Elysia chlorotica OX=188477 GN=EGW08_023678 PE=4 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.071e-14
Identity = 51/143 (35.66%), Postives = 72/143 (50.35%), Query Frame = -1 
Query:  603 YIQLNVSEIGGFDINGYAIVVKIDE*IF---------------------------------P*KVSRVNLA*WLMSYYILQRTDIISDDWAVYRAISRLSNDIYMHSIFIHDQHFVDPNYSDVHTQVIENLWMRAILKLIRQF 932
            Y+  N  EIGGFD NG  +VV+IDE +F                                 P + +R  L   ++  +IL  + I+SD WA Y  I ++   IY H + +H+++FVDP+  +VHTQ IEN WMRA  K+ RQF
Sbjct:  148 YLDRNPQEIGGFDENGEQLVVEIDESLFFHRKYHRGEPRGGGHWVFGGIERQSGKCFMVEVPDR-TRATLE-PIIQEFILPGSHIMSDGWAAYGNIPQIGGGIYTHDVIVHERNFVDPDDPNVHTQNIENTWMRAKRKIKRQF 288
[Close]
BLAST of Rab-like protein 3 vs. TrEMBL
Match: A0A0L8GYE4 (DDE_Tnp_IS1595 domain-containing protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22025842mg PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.137e-13
Identity = 55/149 (36.91%), Postives = 72/149 (48.32%), Query Frame = -1 
Query:  603 KNLISAAYVSVKSISD--------LGRYIQLNVSEIGGFDINGYAIVVKIDE*IFP*KVSRVNL---A*W---------LMSYYILQRTDIISDDWAVYRAISRLSNDIYMHSIFIHDQHFVDPNYSDVHTQVIENLWMRAILKLIRQF 989
            K+++    +S  S+ D           ++  N  EIGG D NG  +VV+IDE  F  +     L     W         L+  +IL  T IISD WA Y  I+ L    Y H + +H  HFVDPN + +HT  IENLWMR   KL  QF
Sbjct:    3 KHIVDECSLSHTSVVDWSNFCCKVCDEWLWQNPVEIGGVDNNGQPLVVEIDESKFFHRKYHRRLWIPGHWVFGERTLLELIQRWILPGTHIISDRWASYANITNLGGCTYTHEVTVHGDHFVDPNDNGIHTHNIENLWMRLKRKLWWQF 151
[Close]
BLAST of Rab-like protein 3 vs. TrEMBL
Match: A0A0L8FW94 (DDE_Tnp_IS1595 domain-containing protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22006020mg PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.228e-13
Identity = 51/126 (40.48%), Postives = 66/126 (52.38%), Query Frame = -1 
Query:  603 YIQLNVSEIGGFDINGYAIVVKIDE*IFP*KVSRVNLA*WLMSYY----------------ILQRTDIISDDWAVYRAISRLSNDIYMHSIFIHDQHFVDPNYSDVHTQVIENLWMRAILKLIRQF 932
            +++ N  EIGG D NG  +VV+IDE  F  +     L  W   ++                IL  T IISD WA Y  I+ L   IY H + +H  HFVDPN +++HTQ IENLWMR   KL  Q+
Sbjct:  147 WLRQNPMEIGGVDNNGQPLVVEIDESKFFHRTYHRGL--WRPGHWVFGGVERDSGKCFLVEILPGTHIISDRWASYANITNLGGCIYTHEVIVHGDHFVDPNDNEIHTQNIENLWMRLKRKLRWQY 270
[Close]
BLAST of Rab-like protein 3 vs. TrEMBL
Match: A0A0L8GWY5 (DDE_Tnp_IS1595 domain-containing protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22026647mg PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.393e-12
Identity = 52/138 (37.68%), Postives = 70/138 (50.72%), Query Frame = -1 
Query:  603 ISAAYVSVKSISDLGR-----YIQLNVSEIGGFDINGYAIVVKIDE*IFP*KV-------SRVNLA*WLMSYYILQRTDIISDDWAVYRAISRLSNDIYMHSIFIHDQHFVDPNYSDVHTQVIENLWMRAILKLIRQF 980
             S  + SV   S+  R     +++ N  EIGG D  G  +VV+I+E  F  +        +   L+  L+  +IL  T IISD WA Y     L    Y H + +H  HFV+PN + +HTQ IENLWMR   KL  QF
Sbjct:  126 CSVCHTSVVDWSNFCREVCDEWLRQNSVEIGGVDSKGQPLVVEIEESKFFHRKYHQVLDRTERTLS-ELIQRWILPGTHIISDGWASYANTGNLGGCTYTHEVIVHGDHFVEPNDNGIHTQNIENLWMRLKRKLRWQF 262
[Close]
BLAST of Rab-like protein 3 vs. TrEMBL
Match: A0A0L8HS33 (DDE_Tnp_IS1595 domain-containing protein (Fragment) OS=Octopus bimaculoides OX=37653 GN=OCBIM_22007566mg PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.093e-11
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = -1 
Query:  585 TDIISDDWAVYRAISRLSNDIYMHSIFIHDQHFVDPNYSDVHTQVIENLWMRAILKLIRQFWHKFCT 785
            T IISD WA Y  I+ L    Y H + +H+ HFVDPN + +HTQ IENLWMR    L R+ W +F T
Sbjct:    1 THIISDGWASYANIANLGGCTYTHKVIVHEDHFVDPNDNGIHTQNIENLWMR----LKRKLWWQFGT 63
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Cavefish
Match: rabl3 (RAB, member of RAS oncogene family like 3 [Source:NCBI gene;Acc:103041457])

HSP 1 Score: 57.3806 bits (137), Expect = 1.269e-8
Identity = 22/47 (46.81%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M++  +VK++V GDSGVGK++LV+++C + V+ NP+WT+G  V+++V
Sbjct:    1 MASLDRVKVLVLGDSGVGKSSLVHLVCQNQVLGNPSWTVGCSVDVRV 47
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Nematostella
Match: EDO28311 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T6U3])

HSP 1 Score: 55.4546 bits (132), Expect = 1.640e-9
Identity = 23/47 (48.94%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M+  +KV+I V GDSGVGKT+LV+++C++  +++  WTIG  VE+K+
Sbjct:    1 MAAVEKVRIAVVGDSGVGKTSLVHLICHEESISSAAWTIGCTVEVKL 47
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Nematostella
Match: EDO47568 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RMA7])

HSP 1 Score: 55.0694 bits (131), Expect = 2.498e-8
Identity = 23/47 (48.94%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M+  +KV+I V GDSGVGKT+LV+++C++  +++  WTIG  VE+K+
Sbjct:    1 MAAVEKVRIAVVGDSGVGKTSLVHLICHEESISSAAWTIGCTVEVKL 47
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Nematostella
Match: EDO44629 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVE9])

HSP 1 Score: 49.2914 bits (116), Expect = 4.556e-7
Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = -1 
Query:  630 ILQRTDIISDDWAVYRAI-SRLSNDIYMHSIFIHDQHFVDPNYSDVHTQVIENLWMR 797
            +L  + + SDDWA YR + +RL N +    + +H  +FVDP  + VHTQ IE+LW R
Sbjct:   71 LLPGSTVHSDDWAAYRRLQARLPNVVANQGVVVHRYNFVDP-ITGVHTQNIESLWSR 126
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Nematostella
Match: EDO33828 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SR40])

HSP 1 Score: 49.2914 bits (116), Expect = 5.739e-7
Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = -1 
Query:  630 ILQRTDIISDDWAVYRAI-SRLSNDIYMHSIFIHDQHFVDPNYSDVHTQVIENLWMR 797
            +L  + + SDDWA YR + +RL N +    + +H  +FVDP  + VHTQ IE+LW R
Sbjct:   71 LLPGSTVHSDDWAAYRRLQARLPNIVANQGVVVHRYNFVDP-ITGVHTQNIESLWSR 126
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Nematostella
Match: EDO40653 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S6I3])

HSP 1 Score: 45.8246 bits (107), Expect = 2.160e-6
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = -1 
Query:  630 ILQRTDIISDDWAVYRAI-SRLSNDIYMHSIFIHDQHFVDPNYSDVHTQVIENLWMR 797
            +L  + + +DDWA YR + +RL N +  H + +H  +FVDP  + VHTQ +E+ W R
Sbjct:    1 LLPGSTVHTDDWAAYRQLQARLPNVVADHGVVVHRYNFVDP-ITGVHTQHVESAWNR 56
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Medaka
Match: rabl3 (RAB, member of RAS oncogene family like 3 [Source:NCBI gene;Acc:101173619])

HSP 1 Score: 58.9214 bits (141), Expect = 3.837e-9
Identity = 22/47 (46.81%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M++  +VK++V GDSGVGK++LV++LC + V+ NP+WT+G  V++++
Sbjct:    1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRI 47
[Close]
BLAST of Rab-like protein 3 vs. Ensembl Medaka
Match: rabl3 (RAB, member of RAS oncogene family like 3 [Source:NCBI gene;Acc:101173619])

HSP 1 Score: 58.9214 bits (141), Expect = 4.202e-9
Identity = 22/47 (46.81%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   15 MSNYQKVKIIVAGDSGVGKTALVNMLCYDTVVTNPNWTIGAQVEIKV 155
            M++  +VK++V GDSGVGK++LV++LC + V+ NP+WT+G  V++++
Sbjct:    1 MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRI 47
[Close]
BLAST of Rab-like protein 3 vs. Planmine SMEST
Match: SMESG000053907.1 (SMESG000053907.1)

HSP 1 Score: 248.44 bits (633), Expect = 1.242e-79
Identity = 132/166 (79.52%), Postives = 149/166 (89.76%), Query Frame = 1 
Query: 1855 MCNILNKESYDDCLHVLNDEKYEYITNNDNFKCLPDTEFSGEWCKDESRFDDVGEILEYVCNINNVNKDNLIKYNKLNGRLNVTILISNSKLCCLIDTGAKISVIGESVLDNIVMFSIEICLVKLRCANELPVSIVGKVNVSIQVLGTKETRMIEFIVAKEISLNL 2352
            M NILN+ESYDDCLHVLNDEKYEYITNNDN+KCLPD+EF  +WCKDE+RFDDV EILEYVCNINNVN DNLIKYNKLNGR NVTILI+NS+LCCL+DTGA I +I ES+LDNI  F+IE CLVKLRCA E PV IVGKVNV++Q++GT++TRMIEFIVAKEIS  L
Sbjct:    1 MSNILNRESYDDCLHVLNDEKYEYITNNDNYKCLPDSEFYSKWCKDETRFDDVREILEYVCNINNVNNDNLIKYNKLNGRPNVTILINNSELCCLLDTGANICMIDESILDNIGKFNIEKCLVKLRCAIESPVLIVGKVNVAVQIVGTRQTRMIEFIVAKEISPKL 166

HSP 2 Score: 69.3218 bits (168), Expect = 1.242e-79
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query: 2351 LKKFDIMLNMXXXXXXXDEKIAGIMHLKEPSESTQCKDINIKELCRKYDS 2500
            L+KF+IML+ KS  SKKDE IAGIMHLK PSES QCKD+N++ELC KY+S
Sbjct:  173 LRKFNIMLHTKSSLSKKDENIAGIMHLKSPSESNQCKDMNVRELCSKYES 222
[Close]
BLAST of Rab-like protein 3 vs. Planmine SMEST
Match: SMESG000033246.1 (SMESG000033246.1)

HSP 1 Score: 200.675 bits (509), Expect = 3.244e-64
Identity = 100/125 (80.00%), Postives = 112/125 (89.60%), Query Frame = 1 
Query: 1978 EWCKDESRFDDVGEILEYVCNINNVNKDNLIKYNKLNGRLNVTILISNSKLCCLIDTGAKISVIGESVLDNIVMFSIEICLVKLRCANELPVSIVGKVNVSIQVLGTKETRMIEFIVAKEISLNL 2352
            EW KDESRFDDVGEILEY CNINNVN DNLIKYNKLNGR +VTILI+NS+LCCL+DTGAKISVI ESVL+NI  F+IE  LVKLRCANE PVSIV KVN+++Q++GT+ETRMIEFIVAKEIS  L
Sbjct:  255 EWSKDESRFDDVGEILEYACNINNVNDDNLIKYNKLNGRPSVTILINNSELCCLLDTGAKISVIDESVLNNIGKFNIEKLLVKLRCANESPVSIVPKVNIAVQIVGTRETRMIEFIVAKEISPKL 379

HSP 2 Score: 65.855 bits (159), Expect = 3.244e-64
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 2 
Query: 2348 ILKKFDIMLNMXXXXXXXDEKIAGIMHLKEPSESTQCKDINIKELCRK 2491
             LKKFDIMLNM+SK SK DE IAGIMHLK+ S+S QC+D N++ELCR+
Sbjct:  385 FLKKFDIMLNMESKLSKNDENIAGIMHLKKSSKSNQCQDSNVRELCRR 432

HSP 3 Score: 178.718 bits (452), Expect = 9.760e-55
Identity = 100/164 (60.98%), Postives = 113/164 (68.90%), Query Frame = 2 
Query: 1382 NRIKMHEKVNKELNRNNSSMAT----TTFRTDIQPANLDKNREYPKK*HHFNKQVVQRNSQPKFKCWACFEEGHRS-ECPNVKCHH---LSHFKHQCSQRTESWRDVRENDQ*YARAKSLGNNRNKRD*QYQRPVAAMDDDKEEHGNQYQNGYAPPRE-VIGAL 1846
            NRIKMH K  K  N     M       + R  +  +   +NRE+ KK  +FN ++VQRN+QPKFKCW CFEEGHR  ECPNVKCHH     HFKH+C QRTE W +VRENDQ Y RAK  GN+RN RD QYQRPVAAMDDD+EEHGNQY NGY   RE VIGAL
Sbjct:   92 NRIKMHAKSEKPQNIPAQPMPQRYNYVSNRFTVGESR--QNREHLKKQQNFNNKIVQRNNQPKFKCWVCFEEGHRRFECPNVKCHHCHKAEHFKHRCFQRTEKWIEVRENDQEYKRAKFQGNDRNNRDRQYQRPVAAMDDDEEEHGNQYPNGYDQLREKVIGAL 253

HSP 4 Score: 55.8398 bits (133), Expect = 9.760e-55
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 3 
Query: 1263 LKHKLNEEELRKFLIFNALGDQDLKKSFNVKQYKLVFEMKTELK 1394
            LKH+ NEE L+KFLIFNA+GDQ+LK    + +YK VFEMK  +K
Sbjct:   52 LKHEFNEEVLQKFLIFNAVGDQNLKNDLMLNEYKSVFEMKNRIK 95
[Close]
BLAST of Rab-like protein 3 vs. Planmine SMEST
Match: SMESG000039117.1 (SMESG000039117.1)

HSP 1 Score: 119.398 bits (298), Expect = 4.294e-43
Identity = 61/78 (78.21%), Postives = 69/78 (88.46%), Query Frame = 1 
Query: 2119 NSKLCCLIDTGAKISVIGESVLDNIVMFSIEICLVKLRCANELPVSIVGKVNVSIQVLGTKETRMIEFIVAKEISLNL 2352
            N +LCCL++TGAKISVI ESVLDNI  F+IE CLVKLRCANE PVSIVGKVNV++Q++GT ETRMIEFIV KEISL L
Sbjct:   16 NIELCCLLETGAKISVIDESVLDNIGKFNIEKCLVKLRCANESPVSIVGKVNVAVQIVGTSETRMIEFIVDKEISLKL 93

HSP 2 Score: 76.2554 bits (186), Expect = 4.294e-43
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 2 
Query: 2351 LKKFDIMLNMXXXXXXXDEKIAGIMHLKEPSESTQCKDINIKELCRKYDSILI 2509
            L+KFDIMLNMKS  S  DE IA IMHLKE SES QC+D N++ELCRKYDSI I
Sbjct:  100 LRKFDIMLNMKSSLSTNDENIARIMHLKESSESNQCQDSNVRELCRKYDSIFI 152
[Close]
BLAST of Rab-like protein 3 vs. Planmine SMEST
Match: SMESG000027262.1 (SMESG000027262.1)

HSP 1 Score: 135.191 bits (339), Expect = 5.812e-37
Identity = 73/102 (71.57%), Postives = 79/102 (77.45%), Query Frame = 2 
Query: 1487 KNREYPKK*HHFNKQVVQRNSQPKFKCWACFEEGHR-SECPNVKCHH---LSHFKHQCSQRTESWRDVRENDQ*YARAKSLGNNRNKRD*QYQRPVAAMDDD 1780
            +NREYPKK H+FNKQVVQR SQPKFK WA FEEGHR SEC NVKCHH     HFKHQC QRTE  R+VRENDQ YAR K  GN+RN RD QYQRPVA  ++ 
Sbjct:   19 QNREYPKKQHNFNKQVVQRISQPKFKFWAYFEEGHRRSECSNVKCHHCHKAGHFKHQCFQRTEKRREVRENDQEYARVKFQGNDRNNRDRQYQRPVAKRNNS 120
[Close]
BLAST of Rab-like protein 3 vs. Planmine SMEST
Match: SMESG000060790.1 (SMESG000060790.1)

HSP 1 Score: 115.546 bits (288), Expect = 4.931e-30
Identity = 58/75 (77.33%), Postives = 62/75 (82.67%), Query Frame = 2 
Query: 1628 SHFKHQCSQRTESWRDVRENDQ*YARAKSLGNNRNKRD*QYQRPVAAMDDDKEEHGNQYQNGYAPPREV-IGALQ 1849
             HFKHQC +RTE WRDVRENDQ  ARAK  GN+R+ RD QYQRPVAAMDDD+EEHGNQY NGY PPRE  IGALQ
Sbjct:   46 GHFKHQCFKRTEKWRDVRENDQEEARAKFQGNDRSNRDRQYQRPVAAMDDDEEEHGNQYPNGYVPPREEGIGALQ 120
The following BLAST results are available for this feature:
BLAST of Rab-like protein 3 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RABL38.463e-1046.94RAB, member of RAS oncogene family like 3 [Source:... [more]
RABL31.090e-948.94RAB, member of RAS oncogene family like 3 [Source:... [more]
RABL31.097e-948.94RAB, member of RAS oncogene family like 3 [Source:... [more]
RABL33.429e-945.83RAB, member of RAS oncogene family like 3 [Source:... [more]
RABL34.193e-948.94RAB, member of RAS oncogene family like 3 [Source:... [more]
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BLAST of Rab-like protein 3 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Rab-like protein 3 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CG47892.781e-638.00gene:FBgn0030792 transcript:FBtr0074333[more]
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BLAST of Rab-like protein 3 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rabl36.830e-1048.94RAB, member of RAS oncogene family-like 3 [Source:... [more]
rabl33.024e-948.94RAB, member of RAS oncogene family-like 3 [Source:... [more]
rabl33.024e-948.94RAB, member of RAS oncogene family-like 3 [Source:... [more]
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BLAST of Rab-like protein 3 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Rab-like protein 3 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Rabl31.201e-1051.06RAB, member RAS oncogene family-like 3 [Source:MGI... [more]
Rabl36.180e-1051.06RAB, member RAS oncogene family-like 3 [Source:MGI... [more]
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BLAST of Rab-like protein 3 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9D4V7|RABL3_MOUSE4.323e-951.06Rab-like protein 3 OS=Mus musculus OX=10090 GN=Rab... [more]
sp|Q5ZKR4|RABL3_CHICK2.151e-846.81Rab-like protein 3 OS=Gallus gallus OX=9031 GN=RAB... [more]
sp|Q6TNS7|RABL3_DANRE2.283e-848.94Rab-like protein 3 OS=Danio rerio OX=7955 GN=rabl3... [more]
sp|Q5HYI8|RABL3_HUMAN2.783e-848.94Rab-like protein 3 OS=Homo sapiens OX=9606 GN=RABL... [more]
sp|Q32LJ6|RABL3_BOVIN2.970e-848.94Rab-like protein 3 OS=Bos taurus OX=9913 GN=RABL3 ... [more]
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BLAST of Rab-like protein 3 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3S1APW62.071e-1435.66DDE_Tnp_IS1595 domain-containing protein (Fragment... [more]
A0A0L8GYE41.137e-1336.91DDE_Tnp_IS1595 domain-containing protein OS=Octopu... [more]
A0A0L8FW941.228e-1340.48DDE_Tnp_IS1595 domain-containing protein OS=Octopu... [more]
A0A0L8GWY51.393e-1237.68DDE_Tnp_IS1595 domain-containing protein OS=Octopu... [more]
A0A0L8HS339.093e-1150.75DDE_Tnp_IS1595 domain-containing protein (Fragment... [more]
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BLAST of Rab-like protein 3 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rabl31.269e-846.81RAB, member of RAS oncogene family like 3 [Source:... [more]
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BLAST of Rab-like protein 3 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Rab-like protein 3 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Rab-like protein 3 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO283111.640e-948.94Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO475682.498e-848.94Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO446294.556e-743.86Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO338285.739e-743.86Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO406532.160e-640.35Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Rab-like protein 3 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rabl33.837e-946.81RAB, member of RAS oncogene family like 3 [Source:... [more]
rabl34.202e-946.81RAB, member of RAS oncogene family like 3 [Source:... [more]
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BLAST of Rab-like protein 3 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000053907.11.242e-7979.52SMESG000053907.1[more]
SMESG000033246.13.244e-6480.00SMESG000033246.1[more]
SMESG000039117.14.294e-4378.21SMESG000039117.1[more]
SMESG000027262.15.812e-3771.57SMESG000027262.1[more]
SMESG000060790.14.931e-3077.33SMESG000060790.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30001953 ID=SMED30001953|Name=Rab-like protein 3|organism=Schmidtea mediterranea sexual|type=transcript|length=2543bp
ATTTAATAACTTTAATGTCAAATTATCAAAAAGTTAAAATAATTGTTGCT
GGCGATTCTGGCGTAGGAAAAACTGCTTTAGTAAATATGTTATGCTATGA
TACAGTTGTGACAAACCCGAATTGGACCATTGGTGCCCAAGTTGAAATTA
AAGTAATTTATTTCTAGTTGTACATGAATTCATTAATTTTAATTCAATAT
TGATTTGTATAACGAATTTAATATTTTCTGATATATTTGTTTAATCAGAT
TCATCAAATGTAAGTGCATGTCAAGAAATGTTTACAAAAATATATTTAAA
TCTGAATTACCTCATTCCTATTCAAATTAGGCCCGAGCAAAACTCTATTT
ATTGTAATAAAAGTGTATTTTATTATTATTATCTTTTTCAAATGTTCAAT
TATTGTTAAAATTCAAAATTAAGCAGCAAATGACATTGACATACAAACCA
AAACGTCAGCTAATATATGTAGTTTCTGAAACCGTTATGGTTCAAAAGAC
GTACAGTCCCACCAAATCACACTAAACGCGGGACGTTCTCAAGTTTCGCA
GCGAAATTCAAACTCTCAAAGATAAGAACTGAAGAGTGCAAAACTTGTGC
CAAAATTGACGTATAAGTTTCAGTATAGCCCGCATCCATAGGTTTTCTAT
AACTTGCGTGTGCACATCAGAGTAGTTTGGATCGACGAAATGTTGGTCAT
GTATAAAAATGGAGTGCATGTAAATATCATTGGATAATCTTGAGATGGCT
CTATACACGGCCCAATCATCGCTTATAATATCTGTCCTTTGTAATATGTA
ATAACTCATTAGCCATTACGCTAAGTTCACACGTGATACTTTCTATGGAA
ATATTTACTCGTCGATTTTAACGACTATTGCATATCCATTTATGTCGAAT
CCACCAATTTCAGATACATTCAGCTGTATATAACGTCCTAAATCACTAAT
CGACTTAACACTTACGTAGGCTGCACTAATTAAATTTTTAAAAATTTGAA
TTCAACTTATACAAACCCCTATTTTCTTGTTAGCTTTTCAAGATAATTAT
AGGCAGAATGAAAAGAATAACTTCCGTCATCTAGATATGTCGCGTAACTG
GTGCAACTTCACTTGATGTATTTACTGAAATAAAATTTTCGATGTCAGAT
GCATATAATCCCAACAATATTGAATTTATATTGCACAGATTGAGATCAGC
TTTCAGAAAACCGATGAACTTGATGGAAGATGATTTTTTGTGAGAAATTG
GCGAGAAGAATTTTGAAACATAAATTAAATGAAGAGGAGCTACGAAAATT
TCTTATTTTCAATGCGTTGGGAGATCAAGATTTAAAAAAAAGTTTTAATG
TTAAACAATATAAATTGGTCTTCGAAATGAAAACAGAATTAAAATGCACG
AAAAGGTAAATAAAGAATTAAATCGAAACAATAGCTCGATGGCTACAACT
ACGTTTCGAACAGATATACAGCCGGCGAATCTAGACAAAAACAGAGAATA
CCCCAAGAAATAACACCATTTCAACAAGCAAGTTGTACAGAGAAATAGTC
AGCCAAAATTCAAATGCTGGGCGTGTTTTGAAGAGGGACATAGATCAGAA
TGTCCTAATGTGAAATGTCACCATTTAAGTCATTTTAAGCACCAATGCTC
GCAGAGAACTGAAAGTTGGAGAGATGTGAGAGAAAATGACCAATAATACG
CACGAGCAAAGTCCCTAGGTAATAATCGAAATAAACGAGACTGACAATAT
CAGAGACCAGTTGCAGCAATGGACGACGACAAAGAGGAACATGGAAACCA
ATACCAAAATGGATATGCTCCACCGCGAGAGGTGATAGGAGCATTGCAGT
AAGTATGTGTAATATATTGAATAAGGAATCGTATGATGATTGTTTGCATG
TATTGAATGATGAAAAATATGAATATATAACTAATAATGATAATTTTAAA
TGCCTGCCTGATACGGAATTTTCTGGTGAGTGGTGTAAGGATGAATCGAG
ATTTGATGATGTTGGAGAAATTCTAGAGTATGTTTGTAATATTAATAATG
TAAATAAAGATAATTTAATTAAATATAATAAACTAAATGGTAGACTAAAT
GTCACTATATTGATAAGTAATAGCAAATTGTGTTGTTTGATAGACACAGG
GGCAAAAATCAGCGTGATAGGTGAAAGTGTATTGGATAATATAGTGATGT
TTAGTATAGAAATATGCTTGGTGAAATTGAGATGTGCAAACGAGTTACCA
GTGTCGATAGTAGGAAAGGTAAATGTTTCAATTCAAGTATTAGGGACAAA
AGAGACGAGAATGATTGAATTTATTGTGGCTAAAGAGATTTCACTGAATC
TTGAAAAAATTCGATATAATGTTAAACATGAAGAGCAAAAAATCAAAGAA
AGATGAAAAGATCGCAGGAATAATGCACTTAAAAGAACCGAGTGAATCTA
CCCAGTGTAAAGACATCAATATTAAAGAACTATGCAGAAAATATGATTCC
ATTTTAATTATTTTTTTATATTACAAAACTTTACTAAATATTA
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protein sequence of SMED30001953-orf-1

>SMED30001953-orf-1 ID=SMED30001953-orf-1|Name=SMED30001953-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=184bp
MCNILNKESYDDCLHVLNDEKYEYITNNDNFKCLPDTEFSGEWCKDESRF
DDVGEILEYVCNINNVNKDNLIKYNKLNGRLNVTILISNSKLCCLIDTGA
KISVIGESVLDNIVMFSIEICLVKLRCANELPVSIVGKVNVSIQVLGTKE
TRMIEFIVAKEISLNLEKIRYNVKHEEQKIKER*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000429neoblast
PLANA:0002089reproductive organ
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR013684MIRO-like
IPR021109Peptidase_aspartic_dom_sf
Vocabulary: biological process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: cellular component
TermDefinition
GO:0005622intracellular
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021109Aspartic peptidase domain superfamilySUPERFAMILYSSF50630Acid proteasescoord: 77..153