SMED30001797

Overview
NameSMED30001797
Smed IDSMED30001797
Length (bp)1686
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30001797 (SMED30001797) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30001797 (SMED30001797) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30001797 (SMED30001797) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30001797 (SMED30001797) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30001797

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30001797SMESG000055722.1 SMESG000043901.1 SMESG000034363.1 SMESG000034362.1 dd_Smed_v4_3685_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30001797SMESG000055722.1 SMESG000043901.1 SMESG000034363.1 SMESG000034362.1 dd_Smed_v4_3685_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30001797SMESG000055722.1 SMESG000043901.1 SMESG000034363.1 SMESG000034362.1 dd_Smed_v4_3685_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30001797 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001697:6075..22882 +8254
Homology
[Close]
BLAST of SMED30001797 vs. TrEMBL
Match: A0A0R3SZU8 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS33 PE=4 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.776e-23
Identity = 67/182 (36.81%), Postives = 106/182 (58.24%), Query Frame = 3 
Query:  321 RRLDSENXXXXXXXXXXCGSAAIILFGVALTKEGYLHQIGTGMWAGSLMLAAGCLGIAASRHRSPCTLISLLVLCVMTSVTSAILASISTAGLVQDGVKHAQST--------------------------------------------KMHLIVLHTLLFIVGFLECSVAVTTAIICGRQVC 734
            RR+ +ENL +LS+IQLLCG AA++L GVA+TK  +L+Q+ TG+W+G LMLA G  GI  +R  +P TL+SLL+ CV+ ++++ +LA +S AGL++DG+   +++                                            ++H ++LH LL ++G LE SV+V  A++C RQ+C
Sbjct:  130 RRMPNENLFVLSMIQLLCGLAAVVLSGVAVTKVVFLYQMATGLWSGFLMLATGFHGIVTARRCTPRTLVSLLIFCVLVALSACLLACVSVAGLIEDGILRPETSFTLLSSNSPYYITSHSSISSNGLSVDIPLGGFSHRRVIASNQPPRLHQVMLHVLLLVIGILEASVSVACAVLCCRQIC 311
[Close]
BLAST of SMED30001797 vs. TrEMBL
Match: A0A564YJB3 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS7000 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.107e-22
Identity = 67/183 (36.61%), Postives = 106/183 (57.92%), Query Frame = 3 
Query:  321 RRLDSENXXXXXXXXXXCGSAAIILFGVALTKEGYLHQIGTGMWAGSLMLAAGCLGIAASRHRSPCTLISLLVLCVMTSVTSAILASISTAGLVQDGVKHAQST---------------------------------------------KMHLIVLHTLLFIVGFLECSVAVTTAIICGRQVC 734
            RR+ +ENL +LS+IQLLCG AA++L GVA+TK  +L+Q+ TG+W+G LMLA G  GI  +R  +P TL+SLL+ CV+ ++++ +LA +S AGL++DG+   +++                                             ++H ++LH LL ++G LE SV+V  A++C RQ+C
Sbjct:  130 RRMPNENLFVLSMIQLLCGLAAVVLSGVAVTKVVFLYQMATGLWSGFLMLATGFHGILTARRCTPRTLVSLLIFCVLVALSACLLACVSVAGLIEDGILRPETSFTLFTSSNSPYYITSHSSISSNGLSVDIPLGGFSHRRVIGSNQPPRLHQVMLHVLLLVIGILEASVSVACAVLCCRQIC 312
[Close]
BLAST of SMED30001797 vs. TrEMBL
Match: A0A0R3W9G3 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS7089 PE=4 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.875e-22
Identity = 69/184 (37.50%), Postives = 104/184 (56.52%), Query Frame = 3 
Query:  321 RRLDSENXXXXXXXXXXCGSAAIILFGVALTKEGYLHQIGTGMWAGSLMLAAGCLGIAASRHRSPCTLISLLVLCVMTSVTSAILASISTAGLVQDG----------------------------------------------VKHAQSTKMHLIVLHTLLFIVGFLECSVAVTTAIICGRQVC 734
            RR+ +ENL +LS+IQLLCG AA++L GVA+TK  +L+Q+ TG+W+G LMLA G  GI  +R  +P TL+SLL+ CV+ ++++ +LA +S AGL++DG                                              V   Q  ++H ++LH LL ++G LE SV+V  A++C RQ+C
Sbjct:  137 RRMPNENLFVLSMIQLLCGLAAVVLSGVAVTKVVFLYQMATGLWSGFLMLATGFHGILTARRCTPRTLVSLLIFCVLVALSACLLACVSVAGLIEDGILRPDASITLLTSSNSPFHLSSHSSSVSPSGLPVDIPLGGFSHQRFVSSNQPPRLHQVMLHILLLVIGILEASVSVACAVLCCRQIC 320
[Close]
BLAST of SMED30001797 vs. TrEMBL
Match: A0A0R3S8Z6 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS674 PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.571e-22
Identity = 67/183 (36.61%), Postives = 106/183 (57.92%), Query Frame = 3 
Query:  321 RRLDSENXXXXXXXXXXCGSAAIILFGVALTKEGYLHQIGTGMWAGSLMLAAGCLGIAASRHRSPCTLISLLVLCVMTSVTSAILASISTAGLVQDGVKHAQST---------------------------------------------KMHLIVLHTLLFIVGFLECSVAVTTAIICGRQVC 734
            RR+ +ENL +LS+IQLLCG AA++L GVA+TK  +L+Q+ TG+W+G LMLA G  GI  +R  +P TL+SLL+ CV+ ++++ +LA +S AGL++DG+   +++                                             ++H ++LH LL ++G LE SV+V  A++C RQ+C
Sbjct:  130 RRMPNENLFVLSMIQLLCGLAAVVLSGVAVTKVVFLYQMATGLWSGFLMLATGFHGILTARRCTPRTLVSLLIFCVLVALSACLLACVSVAGLIEDGILRPETSFTLFTSSNSPYYITSHSSISSNGLSVDIPLGGFSHRRVIGSNQPPRLHQVMLHVLLLVIGILEASVSVACAVLCCRQIC 312
[Close]
BLAST of SMED30001797 vs. TrEMBL
Match: A0A068WQ39 (Uncharacterized protein OS=Echinococcus granulosus OX=6210 GN=EgrG_000076500 PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-22
Identity = 69/184 (37.50%), Postives = 104/184 (56.52%), Query Frame = 3 
Query:  321 RRLDSENXXXXXXXXXXCGSAAIILFGVALTKEGYLHQIGTGMWAGSLMLAAGCLGIAASRHRSPCTLISLLVLCVMTSVTSAILASISTAGLVQDG----------------------------------------------VKHAQSTKMHLIVLHTLLFIVGFLECSVAVTTAIICGRQVC 734
            RR+ +ENL +LS+IQLLCG AA++L GVA+TK  +L+Q+ TG+W+G LMLA G  GI  +R  +P TL+SLL+ CV+ ++++ +LA +S AGL++DG                                              V   Q  ++H ++LH LL ++G LE SV+V  A++C RQ+C
Sbjct:  137 RRMPNENLFVLSMIQLLCGLAAVVLSGVAVTKVVFLYQMATGLWSGFLMLATGFHGILTARRCTPRTLVSLLIFCVLVALSACLLACVSVAGLIEDGILRPDTSITLFTASNSPFYLSSHGPSVASSSLPIDIPLGGFSHRRLVSSNQPPRLHQVMLHILLLVIGILEASVSVACAVLCCRQIC 320
[Close]
BLAST of SMED30001797 vs. Planmine SMEST
Match: SMESG000034362.1 (SMESG000034362.1)

HSP 1 Score: 362.459 bits (929), Expect = 5.534e-124
Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 3 
Query:  246 MTPQQSACLPLSENRKLCVCCPHLPRRLDSENXXXXXXXXXXCGSAAIILFGVALTKEGYLHQIGTGMWAGSLMLAAGCLGIAASRHRSPCTLISLLVLCVMTSVTSAILASISTAGLVQDGVKHAQSTKMHLIVLHTLLFIVGFLECSVAVTTAIICGRQVCFGAVYLPAGSSVRRRACSGFRRGSIYGR 818
            MTPQQSACLPLSENRKLCVCCPHLPRRLDSENLLILSLIQLLCGSAAIILFGVALTKEGYLHQIGTGMWAGSLMLAAGCLGIA SRHRSPCTLISLLVLCVMTSVTSAILASISTAGLVQDGVKHAQSTKMHLIVLHTLLFIVGFLECSVAVTTAIICGRQVCFGAVYLPAGSSVRRRACSGFRRGSIYGR
Sbjct:    1 MTPQQSACLPLSENRKLCVCCPHLPRRLDSENLLILSLIQLLCGSAAIILFGVALTKEGYLHQIGTGMWAGSLMLAAGCLGIATSRHRSPCTLISLLVLCVMTSVTSAILASISTAGLVQDGVKHAQSTKMHLIVLHTLLFIVGFLECSVAVTTAIICGRQVCFGAVYLPAGSSVRRRACSGFRRGSIYGR 191
[Close]
BLAST of SMED30001797 vs. Planmine SMEST
Match: SMESG000043901.1 (SMESG000043901.1)

HSP 1 Score: 322.398 bits (825), Expect = 4.895e-107
Identity = 173/180 (96.11%), Postives = 173/180 (96.11%), Query Frame = 3 
Query:  246 MTPQQSACLPLSENRKLCVCCPHLPRRLDSENXXXXXXXXXXCGSAAIILFGVALTKEGYLHQIGTGMWAGSLMLAAGCLGIAASRHRSPCTLISLLVLCVMTSVTSAILASISTAGLVQDGVKHAQSTKMHLIVLHTLLFIVGFLECSVAVTTAIICGRQVCFGAVYLPAGSSVRRRAC 785
            MTPQQSACLPLSENRKLCVCCPHLPRRLDSENLLILSLIQLLCGSAAIILFGVALTKEGYLHQIGTGMWAGSLMLAAGCLGIA SRHRSPCTLISLLVLCVMTSVTSAILASISTAGLVQDGVKHAQSTKMHLIVLHTLLFIVGFLECSVAVTTAIICGRQVCFGAVYLPA      RAC
Sbjct:    1 MTPQQSACLPLSENRKLCVCCPHLPRRLDSENLLILSLIQLLCGSAAIILFGVALTKEGYLHQIGTGMWAGSLMLAAGCLGIATSRHRSPCTLISLLVLCVMTSVTSAILASISTAGLVQDGVKHAQSTKMHLIVLHTLLFIVGFLECSVAVTTAIICGRQVCFGAVYLPA-----ERAC 175

HSP 2 Score: 144.436 bits (363), Expect = 6.130e-39
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 3 
Query: 1095 PPFPPSYSVQESRPLSAYACVNATDSGDTLLQPVLLVEEQPPPYDSLEYLPDSKEXXXXXXXXXXXXXXXXEPNVSMLVSQPSPATTXXXXXXXXXWKPV 1394
            P  PPSYSVQESRPLSAYACVNATDSGDTLLQPVLLVEEQPPPYDSLEYLPDSKEVDNDLHSLHDDVVVLVEPNVSMLVSQPSPATTSSSSSSSSSWKPV
Sbjct:  179 PSIPPSYSVQESRPLSAYACVNATDSGDTLLQPVLLVEEQPPPYDSLEYLPDSKEVDNDLHSLHDDVVVLVEPNVSMLVSQPSPATTSSSSSSSSSWKPV 278
[Close]
BLAST of SMED30001797 vs. Planmine SMEST
Match: SMESG000034363.1 (SMESG000034363.1)

HSP 1 Score: 229.95 bits (585), Expect = 2.879e-72
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 3 
Query:  924 RNSGQLPVLTTNSFYANVLFPQLQSSPHAQSPLSATCRSSLVYLLPSPNQNEPALLFPPFPPSYSVQESRPLSAYACVNATDSGDTLLQPVLLVEEQPPPYDSLEYLPDSKEXXXXXXXXXXXXXXXXEPNVSMLVSQPSPATTXXXXXXXXXWKPV 1394
            RNSGQLPVLTTNSFYANVLFPQLQSSPHAQSPLSATCRSSLVYLLPSPNQNEPALLFPPFPPSYSVQESRPLSAYACVNATDSGDTLLQPVLLVEEQPPPYDSLEYLPDSKEVDNDLHSLHDDVVVLVEPNVSMLVSQPSPATTSSSSSSSSSWKPV
Sbjct:   41 RNSGQLPVLTTNSFYANVLFPQLQSSPHAQSPLSATCRSSLVYLLPSPNQNEPALLFPPFPPSYSVQESRPLSAYACVNATDSGDTLLQPVLLVEEQPPPYDSLEYLPDSKEVDNDLHSLHDDVVVLVEPNVSMLVSQPSPATTSSSSSSSSSWKPV 197
The following BLAST results are available for this feature:
BLAST of SMED30001797 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001797 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001797 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001797 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001797 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001797 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001797 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001797 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0R3SZU87.776e-2336.81Uncharacterized protein OS=Rodentolepis nana OX=10... [more]
A0A564YJB33.107e-2236.61Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A0R3W9G34.875e-2237.50Uncharacterized protein OS=Taenia asiatica OX=6051... [more]
A0A0R3S8Z65.571e-2236.61Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A068WQ396.322e-2237.50Uncharacterized protein OS=Echinococcus granulosus... [more]
back to top
BLAST of SMED30001797 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001797 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001797 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001797 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001797 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001797 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000034362.15.534e-12499.48SMESG000034362.1[more]
SMESG000043901.14.895e-10796.11SMESG000043901.1[more]
SMESG000034363.12.879e-72100.00SMESG000034363.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30001797 ID=SMED30001797|Name=SMED30001797|organism=Schmidtea mediterranea sexual|type=transcript|length=1686bp
TCTTTTTTTTTCTGATTATTTACACATAAGCTGATTGATAGTATTTTTAA
TAAAAATTTTAACAACTTTTGTTAATAACATTAAATTTGCAGTATTTAAA
GCCAATTTCTTAATTTTGATATTTTAATGCTTCATTTTTGAGATCAATTT
TTATTTTTCACTAAATTTTAGTAAAATTCTTGTTATCTAATGATTTCTAA
CAAAATGGAATTTATTTTGTAAAAATGATTGCATAATAAACTTAGATGAC
TCCACAGCAGTCTGCTTGCCTTCCTCTTTCAGAAAATCGCAAGTTGTGTG
TATGTTGCCCGCATTTACCACGCCGACTTGATTCAGAAAATTTGCTCATT
TTAAGTCTCATCCAGTTACTCTGTGGTAGTGCTGCGATTATTTTATTTGG
AGTAGCACTGACAAAAGAAGGTTATCTACATCAAATTGGTACTGGCATGT
GGGCCGGTTCTTTAATGCTTGCCGCTGGATGCTTAGGTATAGCCGCTAGT
CGACATCGTTCTCCTTGCACTTTAATTTCATTACTCGTTCTTTGTGTTAT
GACATCTGTAACTAGTGCAATTCTCGCATCAATTTCTACCGCTGGACTCG
TTCAGGATGGTGTCAAACATGCACAATCTACAAAAATGCATCTCATTGTA
CTTCACACATTACTTTTCATTGTTGGCTTTTTAGAGTGCAGCGTTGCTGT
CACTACTGCAATTATTTGCGGCAGGCAAGTTTGTTTCGGAGCAGTTTACC
TTCCTGCAGGTAGCTCTGTGCGTAGGCGTGCGTGCAGTGGTTTTCGCCGT
GGATCAATTTATGGAAGAAATCAGTGTTCTTTATTAGGCCCGCCATCAGA
TCTGCCAGGCTTAGCGAATCTGCTAACCGGTACAAACACAACAACAATTA
CCGGTTCTTTATCAAATCTCATCCGTAATAGCGGTCAATTACCGGTGCTC
ACTACTAATTCCTTTTATGCCAACGTGCTTTTTCCACAGTTACAGTCGAG
TCCTCATGCCCAATCTCCTTTATCCGCTACCTGTCGATCAAGTCTTGTAT
ATCTTCTACCGTCTCCGAATCAGAACGAGCCTGCTTTACTGTTCCCTCCA
TTCCCCCCTTCTTACAGTGTTCAAGAAAGCCGACCTCTTTCTGCATATGC
ATGTGTCAATGCGACAGATTCCGGTGACACCCTCCTACAGCCGGTTCTAT
TGGTTGAAGAACAGCCGCCTCCGTATGATTCTTTAGAATACCTTCCAGAT
TCTAAAGAAGTTGACAATGATCTTCACTCGTTACATGATGATGTTGTGGT
GTTGGTTGAGCCGAATGTTTCTATGCTTGTTTCTCAGCCTTCTCCTGCTA
CTACTTCATCCTCTTCATCGTCGTCGTCGTCGTGGAAACCCGTTTAAAAA
ACAACGTCCATAAATACATACAGACACACATACACAATATTATCGGTTGT
GCTTATTTTTTGATGACCCTCGATTATCCTGTTTTGCAATAGCTACGAAA
TATATCATTTAATAACCTGAAATCAAATTTTGAAAGGAGCCATTCTGTGA
TTCATCTGTTGTATATACATATATAAACATATACACAATATATTCATATA
TAATATATGTAACACTCATTAGTTGCGTGTGTCAGTTTGTTATTATTTAA
ATATTTGCTCTTTGTATTGTCTTTAATATACTCAGG
back to top

protein sequence of SMED30001797-orf-1

>SMED30001797-orf-1 ID=SMED30001797-orf-1|Name=SMED30001797-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=384bp
MTPQQSACLPLSENRKLCVCCPHLPRRLDSENLLILSLIQLLCGSAAIIL
FGVALTKEGYLHQIGTGMWAGSLMLAAGCLGIAASRHRSPCTLISLLVLC
VMTSVTSAILASISTAGLVQDGVKHAQSTKMHLIVLHTLLFIVGFLECSV
AVTTAIICGRQVCFGAVYLPAGSSVRRRACSGFRRGSIYGRNQCSLLGPP
SDLPGLANLLTGTNTTTITGSLSNLIRNSGQLPVLTTNSFYANVLFPQLQ
SSPHAQSPLSATCRSSLVYLLPSPNQNEPALLFPPFPPSYSVQESRPLSA
YACVNATDSGDTLLQPVLLVEEQPPPYDSLEYLPDSKEVDNDLHSLHDDV
VVLVEPNVSMLVSQPSPATTSSSSSSSSSWKPV*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0000101muscle cell
Vocabulary: INTERPRO
TermDefinition
IPR030417MS4A
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 362..383
NoneNo IPR availablePANTHERPTHR23320:SF136coord: 33..167
NoneNo IPR availableTMHMMTMhelixcoord: 33..55
NoneNo IPR availableTMHMMTMhelixcoord: 134..156
NoneNo IPR availableTMHMMTMhelixcoord: 65..84
NoneNo IPR availableTMHMMTMhelixcoord: 97..119
IPR030417Membrane-spanning 4-domains subfamily APANTHERPTHR23320MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATEDcoord: 33..167