60S ribosomal protein L7a

Overview


Name	60S ribosomal protein L7a
Smed ID	SMED30001701
Length (bp)	930

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of 60S ribosomal protein L7a (SMED30001701) t-SNE clustered cells

Violin plots show distribution of expression levels for 60S ribosomal protein L7a (SMED30001701) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 60S ribosomal protein L7a (SMED30001701) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 60S ribosomal protein L7a (SMED30001701) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30001701

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 16

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30001701	SMESG000020535.1	SmedASXL_018688	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
pharynx	SMED30001701	SMESG000020535.1	dd_Smed_v4_296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
protonephridia	SMED30001701	SMESG000020535.1	dd_Smed_v4_296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30001701	SMESG000020535.1	dd_Smed_v4_296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30001701	SMESG000020535.1	dd_Smed_v4_296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30001701	SMESG000020535.1	dd_Smed_v4_296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30001701	SMESG000020535.1	dd_Smed_v4_296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30001701	SMESG000020535.1	dd_Smed_v4_296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchyma	SMED30001701	SMESG000020535.1	dd_Smed_v4_296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30001701	SMESG000020535.1	dd_Smed_v4_296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30001701	SMESG000020535.1	dd_Smed_v4_296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30001701	SMESG000020535.1	dd_Smed_v4_296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30001701	SMESG000020535.1	dd_Smed_v4_296_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Category 2 cell	SMED30001701	SMESG000020535.1	dd_Smed_v6_296_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018
progenitor cell	SMED30001701	SMESG000020535.1	dd_Smed_v6_296_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018
neoblast	SMED30001701	SMESG000020535.1	dd_Smed_v6_296_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of 60S ribosomal protein L7a vs. Ensembl Human
Match: RPL7A (ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364])

HSP 1 Score: 313.923 bits (803), Expect = 5.620e-107
Identity = 150/239 (62.76%), Postives = 185/239 (77.41%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQ++IL KRLK+P  INQF  A+D+  A  ++KL  KYRPE+KQEK  RL  RA ++  GK +    +P ++R GV  +TTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC+ VA   V SEDK  L KL E + TN+N+R DEIR+H GG ++G KS A+I KL+K + +E A KLG
Sbjct:   28 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG 266

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Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQ++IL KRLK+P  INQF  A+D+  A  ++KL  KYRPE+KQEK  RL  RA ++  GK +    +P ++R GV  +TTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC+ VA   V SEDK  L KL E + TN+N+R DEIR+H GG ++G KS A+I KL+K + +E A KLG
Sbjct:   28 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG 266

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BLAST of 60S ribosomal protein L7a vs. Ensembl Human
Match: RPL7A (ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364])

HSP 1 Score: 187.578 bits (475), Expect = 1.861e-58
Identity = 89/137 (64.96%), Postives = 107/137 (78.10%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPI 586
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQ++IL KRLK+P  INQF  A+D+  A  ++KL  KYRPE+KQEK  RL  RA ++  GK +    +P ++R GV  +TTLVE KKAQ+VVIAHDVDPI
Sbjct:   55 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPI 191

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Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPI 586
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQ++IL KRLK+P  INQF  A+D+  A  ++KL  KYRPE+KQEK  RL  RA ++  GK +    +P ++R GV  +TTLVE KKAQ+VVIAHDVDPI
Sbjct:   55 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPI 191

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BLAST of 60S ribosomal protein L7a vs. Ensembl Human
Match: RPL7A (ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364])

HSP 1 Score: 177.178 bits (448), Expect = 5.538e-55
Identity = 86/143 (60.14%), Postives = 109/143 (76.22%), Query Frame = 2

Query:  464 GKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            GK +    +P ++R GV  +TTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC+ VA   V SEDK  L KL E + TN+N+R DEIR+H GG ++G KS A+I KL+K + +E A KLG
Sbjct:    9 GKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG 151

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BLAST of 60S ribosomal protein L7a vs. Ensembl Celegans
Match: rpl-7A (60S ribosomal protein L7a [Source:UniProtKB/Swiss-Prot;Acc:Q966C6])

HSP 1 Score: 283.108 bits (723), Expect = 2.347e-95
Identity = 141/232 (60.78%), Postives = 176/232 (75.86%), Query Frame = 2

Query:  179 NPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERE 874
            NPLFE R +NF IGQDIQPK+D+TRFVKWPKY+RLQRQ +IL KRLK+P  INQF  A+D  +A+   KLL KYRPES + K  RL+ RA  R  GK E V  +P  +R+GV  IT LVE ++AQ+V+IAHDV+P+EIVLHLPALCRK  VPY I+KGKA LG +VR+KT +AVALV+V  EDK+ LNKL E +  NF+ R +EIRKH GGG+M  KS AK LK+++ + R+
Sbjct:   30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKIERARARD 261

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BLAST of 60S ribosomal protein L7a vs. Ensembl Celegans
Match: rpl-7A (60S ribosomal protein L7a [Source:UniProtKB/Swiss-Prot;Acc:Q966C6])

HSP 1 Score: 270.781 bits (691), Expect = 7.689e-91
Identity = 132/232 (56.90%), Postives = 166/232 (71.55%), Query Frame = 2

Query:  179 NPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERE 874
            NPLFE R +NF IGQDIQPK+D+TRFVKWPKY+RLQRQ +IL KRLK+P  INQF  A+D  +A+   KLL KYRPES +                    V  +P  +R+GV  IT LVE ++AQ+V+IAHDV+P+EIVLHLPALCRK  VPY I+KGKA LG +VR+KT +AVALV+V  EDK+ LNKL E +  NF+ R +EIRKH GGG+M  KS AK LK+++ + R+
Sbjct:   30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTE--------------------VTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKIERARARD 241

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BLAST of 60S ribosomal protein L7a vs. Ensembl Celegans
Match: Y73B3A.18 (pep chromosome:WBcel235:X:48483:60752:1 gene:WBGene00022219.1 transcript:Y73B3A.18a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y73B3A.18)

HSP 1 Score: 120.168 bits (300), Expect = 2.602e-32
Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 2

Query:  179 NPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETV 481
            NPLFE R +NF IGQDIQPK+D+TRFVKWPKY+RLQRQ +IL KRLK+P  INQF  A+D  +A+   KLL KYRPES + K  RL+ RA  R  GK E V
Sbjct:  133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPESSEAKKNRLRARAEARAAGKKEEV 233

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BLAST of 60S ribosomal protein L7a vs. Ensembl Celegans
Match: Y73B3A.18 (pep chromosome:WBcel235:X:48483:60774:1 gene:WBGene00022219.1 transcript:Y73B3A.18b.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y73B3A.18)

HSP 1 Score: 98.9821 bits (245), Expect = 9.119e-25
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 2

Query:  179 NPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAID 358
            NPLFE R +NF IGQDIQPK+D+TRFVKWPKY+RLQRQ +IL KRLK+P  INQF  A+D
Sbjct:  133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192

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BLAST of 60S ribosomal protein L7a vs. Ensembl Fly
Match: RpL7A (gene:FBgn0014026 transcript:FBtr0345293)

HSP 1 Score: 285.419 bits (729), Expect = 5.282e-96
Identity = 139/238 (58.40%), Postives = 178/238 (74.79%), Query Frame = 2

Query:  179 NPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            N LFE RPKNF IGQ++QPKRDL+RFV+WPKY+R+QRQK++L KRLK+P  I+QF+  +DK  A  + KLL KYRPES   K  RLK  A  + +GK    + KP+ +  G   +T L+EQKKAQ+VVIAHDVDP+E+VL LPALCRKMGVPYCI+KGKA LG++VR+KTC+ +AL  V + DKA   K+ E + TNFN R +EIR+H GGGI+G KS A+I KL++ + RE A K G
Sbjct:   34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKSLARISKLERAKARELAQKQG 271

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BLAST of 60S ribosomal protein L7a vs. Ensembl Fly
Match: RpL7A (gene:FBgn0014026 transcript:FBtr0070916)

HSP 1 Score: 285.419 bits (729), Expect = 5.282e-96
Identity = 139/238 (58.40%), Postives = 178/238 (74.79%), Query Frame = 2

Query:  179 NPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            N LFE RPKNF IGQ++QPKRDL+RFV+WPKY+R+QRQK++L KRLK+P  I+QF+  +DK  A  + KLL KYRPES   K  RLK  A  + +GK    + KP+ +  G   +T L+EQKKAQ+VVIAHDVDP+E+VL LPALCRKMGVPYCI+KGKA LG++VR+KTC+ +AL  V + DKA   K+ E + TNFN R +EIR+H GGGI+G KS A+I KL++ + RE A K G
Sbjct:   34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKSLARISKLERAKARELAQKQG 271

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BLAST of 60S ribosomal protein L7a vs. Ensembl Fly
Match: RpL7A (gene:FBgn0014026 transcript:FBtr0343329)

HSP 1 Score: 285.419 bits (729), Expect = 5.282e-96
Identity = 139/238 (58.40%), Postives = 178/238 (74.79%), Query Frame = 2

Query:  179 NPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            N LFE RPKNF IGQ++QPKRDL+RFV+WPKY+R+QRQK++L KRLK+P  I+QF+  +DK  A  + KLL KYRPES   K  RLK  A  + +GK    + KP+ +  G   +T L+EQKKAQ+VVIAHDVDP+E+VL LPALCRKMGVPYCI+KGKA LG++VR+KTC+ +AL  V + DKA   K+ E + TNFN R +EIR+H GGGI+G KS A+I KL++ + RE A K G
Sbjct:   34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKSLARISKLERAKARELAQKQG 271

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BLAST of 60S ribosomal protein L7a vs. Ensembl Fly
Match: RpL7A (gene:FBgn0014026 transcript:FBtr0343328)

HSP 1 Score: 285.419 bits (729), Expect = 5.282e-96
Identity = 139/238 (58.40%), Postives = 178/238 (74.79%), Query Frame = 2

Query:  179 NPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            N LFE RPKNF IGQ++QPKRDL+RFV+WPKY+R+QRQK++L KRLK+P  I+QF+  +DK  A  + KLL KYRPES   K  RLK  A  + +GK    + KP+ +  G   +T L+EQKKAQ+VVIAHDVDP+E+VL LPALCRKMGVPYCI+KGKA LG++VR+KTC+ +AL  V + DKA   K+ E + TNFN R +EIR+H GGGI+G KS A+I KL++ + RE A K G
Sbjct:   34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKSLARISKLERAKARELAQKQG 271

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BLAST of 60S ribosomal protein L7a vs. Ensembl Fly
Match: RpL7A (gene:FBgn0014026 transcript:FBtr0070915)

HSP 1 Score: 285.419 bits (729), Expect = 5.282e-96
Identity = 139/238 (58.40%), Postives = 178/238 (74.79%), Query Frame = 2

Query:  179 NPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            N LFE RPKNF IGQ++QPKRDL+RFV+WPKY+R+QRQK++L KRLK+P  I+QF+  +DK  A  + KLL KYRPES   K  RLK  A  + +GK    + KP+ +  G   +T L+EQKKAQ+VVIAHDVDP+E+VL LPALCRKMGVPYCI+KGKA LG++VR+KTC+ +AL  V + DKA   K+ E + TNFN R +EIR+H GGGI+G KS A+I KL++ + RE A K G
Sbjct:   34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKSLARISKLERAKARELAQKQG 271

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BLAST of 60S ribosomal protein L7a vs. Ensembl Zebrafish
Match: rpl7a (ribosomal protein L7a [Source:ZFIN;Acc:ZDB-GENE-031001-9])

HSP 1 Score: 311.997 bits (798), Expect = 1.819e-106
Identity = 148/239 (61.92%), Postives = 184/239 (76.99%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+YVRLQRQ++IL KRLK+P  INQF  A+D+  A  + KL  KYRPE+K EK  RL  RA ++  GK +T   +P ++R GV  +TTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC+++A      EDKA L KL E + TN+N+R +EIR+H GG ++G KS A+I KL+K + +E A KLG
Sbjct:   28 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYVRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLFKLAHKYRPETKHEKKQRLLARAEQKAAGKGDTPTKRPPVLRAGVNTVTTLVESKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSIAFTQTNPEDKAALAKLVEAIKTNYNDRYEEIRRHWGGNVLGPKSTARIAKLEKAKAKELATKLG 266

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Zebrafish
Match: rpl7a (ribosomal protein L7a [Source:ZFIN;Acc:ZDB-GENE-031001-9])

HSP 1 Score: 311.997 bits (798), Expect = 2.029e-106
Identity = 148/239 (61.92%), Postives = 184/239 (76.99%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+YVRLQRQ++IL KRLK+P  INQF  A+D+  A  + KL  KYRPE+K EK  RL  RA ++  GK +T   +P ++R GV  +TTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC+++A      EDKA L KL E + TN+N+R +EIR+H GG ++G KS A+I KL+K + +E A KLG
Sbjct:   28 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYVRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLFKLAHKYRPETKHEKKQRLLARAEQKAAGKGDTPTKRPPVLRAGVNTVTTLVESKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSIAFTQTNPEDKAALAKLVEAIKTNYNDRYEEIRRHWGGNVLGPKSTARIAKLEKAKAKELATKLG 266

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Zebrafish
Match: snu13a (SNU13 homolog, small nuclear ribonucleoprotein a (U4/U6.U5) [Source:ZFIN;Acc:ZDB-GENE-040426-879])

HSP 1 Score: 51.9878 bits (123), Expect = 4.356e-8
Identity = 22/57 (38.60%), Postives = 35/57 (61.40%), Query Frame = 2

Query:  500 IRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQ 670
            +R G  E T  + +  ++ +V+A D +P+EI+LHLP LC    VPY  ++ K  LG+
Sbjct:   35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Zebrafish
Match: snu13b (SNU13 homolog, small nuclear ribonucleoprotein b (U4/U6.U5) [Source:ZFIN;Acc:ZDB-GENE-030131-9670])

HSP 1 Score: 51.9878 bits (123), Expect = 4.356e-8
Identity = 22/57 (38.60%), Postives = 35/57 (61.40%), Query Frame = 2

Query:  500 IRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQ 670
            +R G  E T  + +  ++ +V+A D +P+EI+LHLP LC    VPY  ++ K  LG+
Sbjct:   35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Zebrafish
Match: nhp2 (NHP2 ribonucleoprotein homolog (yeast) [Source:NCBI gene;Acc:100003787])

HSP 1 Score: 49.6766 bits (117), Expect = 4.102e-7
Identity = 25/85 (29.41%), Postives = 41/85 (48.24%), Query Frame = 2

Query:  500 IRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTE 754
            IR GV+E+   + + +  +VV A D  PI++  HLP +C    +PY  +  K  LG     K  + V ++    E K   ++  E
Sbjct:   57 IRRGVKEVQKFINKGETGIVVFAGDTLPIDVYCHLPIMCEDRSLPYAYVPSKVDLGSSAGSKRPTCVIMIKPHDEYKEAYDECVE 141

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Xenopus
Match: rpl7a (ribosomal protein L7a [Source:NCBI gene;Acc:447981])

HSP 1 Score: 316.235 bits (809), Expect = 7.362e-108
Identity = 153/239 (64.02%), Postives = 186/239 (77.82%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQK+IL KRLK+P  INQF  A+D+  A  + KL  KYRPE+KQEK  RL  RA ++  GK +    +P ++R GV  +TTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC++VAL  V  EDK  L KL E + TN+N+R DEIR+H GGGI+G KS A+I KL+K + +E A KLG
Sbjct:   35 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQKAILYKRLKVPPAINQFTQALDRQTATQLFKLAHKYRPETKQEKKKRLLARAEQKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSVALTQVNPEDKGALAKLVEAVKTNYNDRFDEIRRHWGGGILGPKSVARIAKLEKAKAKELATKLG 273

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Xenopus
Match: snu13 (small nuclear ribonucleoprotein 13 [Source:NCBI gene;Acc:394590])

HSP 1 Score: 52.7582 bits (125), Expect = 3.076e-8
Identity = 23/56 (41.07%), Postives = 34/56 (60.71%), Query Frame = 2

Query:  500 IRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILG 667
            +R G  E T  + +  A+ +V+A D +P+EI+LHLP LC    VPY  ++ K  LG
Sbjct:   35 LRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALG 90

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Xenopus
Match: nhp2 (NHP2 ribonucleoprotein [Source:NCBI gene;Acc:394586])

HSP 1 Score: 52.373 bits (124), Expect = 7.859e-8
Identity = 24/70 (34.29%), Postives = 39/70 (55.71%), Query Frame = 2

Query:  500 IRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALV 709
            IR GV+E+   + + +  +VV+A D  PIE+  H+P +C   G+PY  +  K+ LG     K  + V L+
Sbjct:   56 IRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Mouse
Match: Rpl7a (ribosomal protein L7A [Source:MGI Symbol;Acc:MGI:1353472])

HSP 1 Score: 313.923 bits (803), Expect = 3.574e-107
Identity = 150/239 (62.76%), Postives = 184/239 (76.99%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQ++IL KRLK+P  INQF  A+D+  A  ++KL  KYRPE+KQEK  RL  RA ++  GK +    +P ++R GV  +TTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG +V +KTC+ VA   V SEDK  L KL E + TN+N+R DEIR+H GG ++G KS A+I KL+K + +E A KLG
Sbjct:   28 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG 266

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Mouse
Match: Gm14214 (predicted gene 14214 [Source:MGI Symbol;Acc:MGI:3649357])

HSP 1 Score: 252.677 bits (644), Expect = 1.096e-83
Identity = 128/230 (55.65%), Postives = 162/230 (70.43%), Query Frame = 2

Query:  203 KNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            KNF IGQDIQPKRDLT FVKWP Y+ LQ+Q++IL K+L +P  INQF  A+D+  A  ++KL        KQEK  RL  RA ++  GK +    +P ++R GV   TTLVE KKAQ+VVIAHDVDP E V+ LPALCRKMGVPYCI+KGKA LG +V +KT + VA   V SEDK  L KL E + TN+N+R D+IR H GG ++G KS A++ KL+K++ +E A KLG
Sbjct:    2 KNFGIGQDIQPKRDLTHFVKWPCYINLQQQRAILYKQLGVPPAINQFTQALDRQTATQLLKL------AHKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTNTTLVENKKAQLVVIAHDVDPSEPVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTFTTVAFTQVNSEDKGALAKLVESIRTNYNDRYDKIRHHWGGNVLGSKSVARVAKLEKVKAKELATKLG 225

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Mouse
Match: Snu13 (SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) [Source:MGI Symbol;Acc:MGI:893586])

HSP 1 Score: 51.2174 bits (121), Expect = 7.802e-8
Identity = 22/57 (38.60%), Postives = 35/57 (61.40%), Query Frame = 2

Query:  500 IRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQ 670
            +R G  E T  + +  ++ +V+A D +P+EI+LHLP LC    VPY  ++ K  LG+
Sbjct:   35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Mouse
Match: Nhp2 (NHP2 ribonucleoprotein [Source:MGI Symbol;Acc:MGI:1098547])

HSP 1 Score: 51.2174 bits (121), Expect = 1.568e-7
Identity = 28/85 (32.94%), Postives = 42/85 (49.41%), Query Frame = 2

Query:  500 IRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTE 754
            IR GV+E+   V + +  ++V+A D  PIE+  HLP LC    +PY  +  K  LG     K  + V +V    E +   +K  E
Sbjct:   60 IRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMVKPHEEYQETYDKCLE 144

[Close]

BLAST of 60S ribosomal protein L7a vs. UniProt/SwissProt
Match: sp|Q2TBQ5|RL7A_BOVIN (60S ribosomal protein L7a OS=Bos taurus OX=9913 GN=RPL7A PE=2 SV=3)

HSP 1 Score: 314.309 bits (804), Expect = 1.802e-106
Identity = 150/239 (62.76%), Postives = 186/239 (77.82%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQ++IL KRLK+P  INQF  A+D+  A  ++KL  KYRPE+KQEK  RL  RA ++  GK +    +P ++R GV  +TTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC+ VA   V SEDK+ L KL E + TN+N+R DEIR+H GG ++G KS A+I KL+K + +E A KLG
Sbjct:   28 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKSALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG 266

[Close]

BLAST of 60S ribosomal protein L7a vs. UniProt/SwissProt
Match: sp|P12970|RL7A_MOUSE (60S ribosomal protein L7a OS=Mus musculus OX=10090 GN=Rpl7a PE=1 SV=2)

HSP 1 Score: 313.923 bits (803), Expect = 2.500e-106
Identity = 150/239 (62.76%), Postives = 184/239 (76.99%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQ++IL KRLK+P  INQF  A+D+  A  ++KL  KYRPE+KQEK  RL  RA ++  GK +    +P ++R GV  +TTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG +V +KTC+ VA   V SEDK  L KL E + TN+N+R DEIR+H GG ++G KS A+I KL+K + +E A KLG
Sbjct:   28 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG 266

[Close]

BLAST of 60S ribosomal protein L7a vs. UniProt/SwissProt
Match: sp|P62425|RL7A_RAT (60S ribosomal protein L7a OS=Rattus norvegicus OX=10116 GN=Rpl7a PE=1 SV=2)

HSP 1 Score: 313.923 bits (803), Expect = 2.699e-106
Identity = 150/239 (62.76%), Postives = 185/239 (77.41%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQ++IL KRLK+P  INQF  A+D+  A  ++KL  KYRPE+KQEK  RL  RA ++  GK +    +P ++R GV  +TTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC+ VA   V SEDK  L KL E + TN+N+R DEIR+H GG ++G KS A+I KL+K + +E A KLG
Sbjct:   28 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG 266

[Close]

BLAST of 60S ribosomal protein L7a vs. UniProt/SwissProt
Match: sp|Q4R5C2|RL7A_MACFA (60S ribosomal protein L7a OS=Macaca fascicularis OX=9541 GN=RPL7A PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 2.699e-106
Identity = 150/239 (62.76%), Postives = 185/239 (77.41%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQ++IL KRLK+P  INQF  A+D+  A  ++KL  KYRPE+KQEK  RL  RA ++  GK +    +P ++R GV  +TTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC+ VA   V SEDK  L KL E + TN+N+R DEIR+H GG ++G KS A+I KL+K + +E A KLG
Sbjct:   28 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG 266

[Close]

BLAST of 60S ribosomal protein L7a vs. UniProt/SwissProt
Match: sp|P62424|RL7A_HUMAN (60S ribosomal protein L7a OS=Homo sapiens OX=9606 GN=RPL7A PE=1 SV=2)

HSP 1 Score: 313.923 bits (803), Expect = 2.699e-106
Identity = 150/239 (62.76%), Postives = 185/239 (77.41%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQ++IL KRLK+P  INQF  A+D+  A  ++KL  KYRPE+KQEK  RL  RA ++  GK +    +P ++R GV  +TTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC+ VA   V SEDK  L KL E + TN+N+R DEIR+H GG ++G KS A+I KL+K + +E A KLG
Sbjct:   28 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG 266

[Close]

BLAST of 60S ribosomal protein L7a vs. TrEMBL
Match: E9LR67 (60S ribosomal L7a-like protein OS=Phragmatopoma lapidosa OX=341668 PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 1.679e-109
Identity = 152/239 (63.60%), Postives = 193/239 (80.75%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
             NPLFE RPKNF IGQDIQPKRDL+RFV+WPKY+RLQRQK+IL +RLK+P  INQF  A+D+  A  + +LL KYRPESKQEK +RLK RA ER +GKP+    +P ++R GV  +TTL+EQKKAQ+V+IAHDVDPIEIVL +PALCRKMGVPYCI+KGKA LG++VR+KT + +AL  V SED++ L+KL + + TNFN+R DEIR+H GGG+MG KS AK+ KL+K + +E A ++G
Sbjct:   27 ANPLFEKRPKNFRIGQDIQPKRDLSRFVRWPKYIRLQRQKAILYQRLKVPPPINQFTQAVDRQTASQLFRLLEKYRPESKQEKASRLKARAEERTKGKPDAPTKRPPVVRSGVNTVTTLIEQKKAQLVIIAHDVDPIEIVLFMPALCRKMGVPYCIVKGKARLGRVVRRKTATCLALTTVNSEDRSSLSKLVDSVKTNFNDRVDEIRRHWGGGVMGSKSLAKVAKLEKAKAKELAQRMG 265

[Close]

BLAST of 60S ribosomal protein L7a vs. TrEMBL
Match: A0A1S3KA42 (60S ribosomal protein L7a OS=Lingula unguis OX=7574 GN=LOC106179865 PE=4 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 1.032e-107
Identity = 151/239 (63.18%), Postives = 192/239 (80.33%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE R KNF IGQDIQPKRDL+RFV+WPKY+RLQRQK+IL +RLK+P  INQF  A+D+  A  + +L+ KYRPE+KQ++  RL+ RA ERV+GK +T   +P ++R GV  +TTL+EQKKAQ+VVIAHDV+PIEIVL LPALCRKM VPYCI+KGKA LG++V +KTCS +AL  V  EDK+ LNKL + + TNFN RGDEIR+H GGG+MG KSQA++ K++K + +E A K+G
Sbjct:   27 VNPLFEKRAKNFGIGQDIQPKRDLSRFVRWPKYIRLQRQKAILQQRLKVPPSINQFKQALDRQTATQLFRLMDKYRPETKQQRKQRLQARAEERVKGKDDTPTKRPPVVRSGVNTVTTLIEQKKAQLVVIAHDVEPIEIVLFLPALCRKMAVPYCIVKGKARLGRVVHRKTCSCLALTLVNPEDKSALNKLIDAVKTNFNERGDEIRRHWGGGVMGAKSQARVAKIEKAKAKELAQKMG 265

[Close]

BLAST of 60S ribosomal protein L7a vs. TrEMBL
Match: A0A4W6BLZ0 (Ribosomal_L7Ae domain-containing protein OS=Lates calcarifer OX=8187 GN=RPL7A PE=4 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 1.119e-105
Identity = 151/239 (63.18%), Postives = 186/239 (77.82%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQ+SIL KRLK+P  INQF  A+D+  A  + KL  KYRPE+KQEK  RL  RA ++  GK +T   +P ++R GV  +TTLVE KKAQ+V+IAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC++VA   +  EDK  L KL E + TN+N+R +EIR+H GGGIMG KS A+I KL+K + +E A KLG
Sbjct:   28 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRSILYKRLKVPPAINQFTQALDRQTATQLFKLAHKYRPETKQEKKQRLLARAEQKAAGKGDTPTKRPPVLRAGVNTVTTLVENKKAQLVIIAHDVDPIELVVFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSVAFTQINPEDKGALAKLVEAIKTNYNDRYEEIRRHWGGGIMGPKSTARITKLEKAKAKELATKLG 266

[Close]

BLAST of 60S ribosomal protein L7a vs. TrEMBL
Match: A0A3B3QCC5 (Ribosomal_L7Ae domain-containing protein OS=Paramormyrops kingsleyae OX=1676925 PE=4 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 1.940e-105
Identity = 151/239 (63.18%), Postives = 185/239 (77.41%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQ++IL KRLK+P  INQF  A+D+  A  + KL  KYRPE+KQEK  RL  RA ++  GK +T   +P ++R GV  +TTLVE KKAQ+V IAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC++VA   +  EDK  L KL E + TN+N+R DEIR+H GGGIMG KS A+I KL+K + +E A KLG
Sbjct:   31 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPSINQFTQALDRQTATQLFKLAHKYRPETKQEKKKRLLARAEQKAAGKGDTPSKRPPVLRAGVNTVTTLVESKKAQLVAIAHDVDPIELVVFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSVAFTQINPEDKGALAKLVEAIKTNYNDRYDEIRRHWGGGIMGPKSTARIAKLEKAKAKELATKLG 269

[Close]

BLAST of 60S ribosomal protein L7a vs. TrEMBL
Match: A0A3B3QA53 (Ribosomal_L7Ae domain-containing protein OS=Paramormyrops kingsleyae OX=1676925 PE=4 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 2.193e-105
Identity = 151/239 (63.18%), Postives = 185/239 (77.41%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQ++IL KRLK+P  INQF  A+D+  A  + KL  KYRPE+KQEK  RL  RA ++  GK +T   +P ++R GV  +TTLVE KKAQ+V IAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC++VA   +  EDK  L KL E + TN+N+R DEIR+H GGGIMG KS A+I KL+K + +E A KLG
Sbjct:   33 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPSINQFTQALDRQTATQLFKLAHKYRPETKQEKKKRLLARAEQKAAGKGDTPSKRPPVLRAGVNTVTTLVESKKAQLVAIAHDVDPIELVVFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSVAFTQINPEDKGALAKLVEAIKTNYNDRYDEIRRHWGGGIMGPKSTARIAKLEKAKAKELATKLG 271

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Cavefish
Match: rpl7a (ribosomal protein L7a [Source:NCBI gene;Acc:103021457])

HSP 1 Score: 308.531 bits (789), Expect = 3.002e-105
Identity = 146/239 (61.09%), Postives = 182/239 (76.15%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQ++IL KRLK+P  INQF  A+D+  A  + KL  KYRPE+KQEK  RL  RA ++  GK +    +P ++R GV  +T+LVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC++V       ED+A L KL E + TN+N+R +EIR+H GG IMG KS A+  KL+K + +E A KLG
Sbjct:   28 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLFKLAHKYRPETKQEKKRRLLARAEQKAAGKGDAPTKRPPVLRAGVNSVTSLVESKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTSVCFTQTNPEDRAALAKLVEAIKTNYNDRYEEIRRHWGGNIMGPKSTARFAKLEKTKAKELAAKLG 266

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Cavefish
Match: rpl7a (ribosomal protein L7a [Source:NCBI gene;Acc:103021457])

HSP 1 Score: 308.531 bits (789), Expect = 4.067e-105
Identity = 146/239 (61.09%), Postives = 182/239 (76.15%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQ++IL KRLK+P  INQF  A+D+  A  + KL  KYRPE+KQEK  RL  RA ++  GK +    +P ++R GV  +T+LVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC++V       ED+A L KL E + TN+N+R +EIR+H GG IMG KS A+  KL+K + +E A KLG
Sbjct:   36 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLFKLAHKYRPETKQEKKRRLLARAEQKAAGKGDAPTKRPPVLRAGVNSVTSLVESKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTSVCFTQTNPEDRAALAKLVEAIKTNYNDRYEEIRRHWGGNIMGPKSTARFAKLEKTKAKELAAKLG 274

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Cavefish
Match: rpl7a (ribosomal protein L7a [Source:NCBI gene;Acc:103021457])

HSP 1 Score: 308.531 bits (789), Expect = 4.677e-105
Identity = 146/239 (61.09%), Postives = 182/239 (76.15%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+Y+RLQRQ++IL KRLK+P  INQF  A+D+  A  + KL  KYRPE+KQEK  RL  RA ++  GK +    +P ++R GV  +T+LVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC++V       ED+A L KL E + TN+N+R +EIR+H GG IMG KS A+  KL+K + +E A KLG
Sbjct:   34 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLFKLAHKYRPETKQEKKRRLLARAEQKAAGKGDAPTKRPPVLRAGVNSVTSLVESKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTSVCFTQTNPEDRAALAKLVEAIKTNYNDRYEEIRRHWGGNIMGPKSTARFAKLEKTKAKELAAKLG 272

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Cavefish
Match: snu13a (NHP2-like protein 1 [Source:NCBI gene;Acc:103040872])

HSP 1 Score: 51.9878 bits (123), Expect = 4.190e-8
Identity = 22/57 (38.60%), Postives = 35/57 (61.40%), Query Frame = 2

Query:  500 IRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQ 670
            +R G  E T  + +  ++ +V+A D +P+EI+LHLP LC    VPY  ++ K  LG+
Sbjct:   35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Cavefish
Match: snu13b (small nuclear ribonucleoprotein 13 [Source:NCBI gene;Acc:103032763])

HSP 1 Score: 51.6026 bits (122), Expect = 4.619e-8
Identity = 22/57 (38.60%), Postives = 35/57 (61.40%), Query Frame = 2

Query:  500 IRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQ 670
            +R G  E T  + +  ++ +V+A D +P+EI+LHLP LC    VPY  ++ K  LG+
Sbjct:   35 LRKGANESTKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Sea Lamprey
Match: nhp2 (NHP2 ribonucleoprotein homolog (yeast) [Source:NCBI gene;Acc:100003787])

HSP 1 Score: 59.3066 bits (142), Expect = 4.018e-11
Identity = 28/81 (34.57%), Postives = 47/81 (58.02%), Query Frame = 2

Query:  485 TKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASED 727
            +K  ++R GV+E+   +++ +  +VV+A D  P+E++ H+P +C    +PYC   GK+ LG     K  + V LV  A ED
Sbjct:   57 SKQKMLRRGVKEVQKFLKKGEKGIVVLAGDTQPVEVICHIPIMCEDQNLPYCYEGGKSDLGGAAGSKRATCVILVK-AHED 136

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Yeast
Match: RPL8B (Ribosomal 60S subunit protein L8B; required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit; depletion leads to a turnover of pre-rRNA; L8 binds to Domain I of 25S and 5.8 S rRNAs; mutation results in decreased amounts of free 60S subunits; homologous to mammalian ribosomal protein L7A, no bacterial homolog; RPL8B has a paralog, RPL8A, that arose from the whole genome duplication [Source:SGD;Acc:S000003968])

HSP 1 Score: 249.21 bits (635), Expect = 6.654e-83
Identity = 121/231 (52.38%), Postives = 162/231 (70.13%), Query Frame = 2

Query:  179 NPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKP-ETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQE 868
            NPL  S PKNF IGQ +QPKR+L+R+VKWP+YVRLQRQK IL+ RLK+P  I QF   +D+  A    KL +KYRPE+  EK  RL   A+   EGK  +    KP  ++YG+  + +L+E KKA++V+IA+DVDPIE+V+ LPALC+KMGVPY I+KGKA LG +V +KT +  AL  V +ED+A L KL   +  NF ++ DE++KH GGGI+G K+QAK+ K  K  +
Sbjct:   24 NPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRLQRQKKILSIRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAIAEGKSKQDASPKPYAVKYGLNHVVSLIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIIKGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGNKAQAKMDKRAKTSD 254

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Yeast
Match: RPL8A (Ribosomal 60S subunit protein L8A; required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit; depletion leads to a turnover of pre-rRNA; L8 binds to Domain I of 25S and 5.8 S rRNAs; mutation results in decreased amounts of free 60S subunits; homologous to mammalian ribosomal protein L7A, no bacterial homolog; RPL8A has a paralog, RPL8B, that arose from the whole genome duplication [Source:SGD;Acc:S000001025])

HSP 1 Score: 246.128 bits (627), Expect = 1.077e-81
Identity = 120/228 (52.63%), Postives = 160/228 (70.18%), Query Frame = 2

Query:  179 NPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKP-ETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKK 859
            NPL  S PKNF IGQ +QPKR+L+R+VKWP+YVR+QRQK IL+ RLK+P  I QF   +D+  A    KL +KYRPE+  EK  RL   A+   EGK  +    KP  ++YG+  +  L+E KKA++V+IA+DVDPIE+V+ LPALC+KMGVPY I+KGKA LG +V +KT +  AL  V +ED+A L KL   +  NF ++ DE++KH GGGI+G K+QAK+ K  K
Sbjct:   24 NPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQRQKKILSIRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGNKAQAKMDKRAK 251

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Yeast
Match: YLL044W_mRNA (Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; transcription of both YLL044W and the overlapping gene RPL8B is reduced in the gcr1 null mutant [Source:SGD;Acc:S000003967])

HSP 1 Score: 56.6102 bits (135), Expect = 1.631e-10
Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = -3

Query:  110 AFRSIFTQKFNNRFSIRLVNSIIKLIDYSWHFQSFIKN*LLSLKSDIFWPFDKSS*VTFWLNILTNCKIFRSRFEKRIYNLL-FDGL----*FYNFRYWSYLFDRL 412
             F S+  ++     S   V S+++L +   + QS  ++ LLSL+SDIFWPFD S  V+ WL+ L N ++  SR  + + +L+   GL     + NF  WS+LF +L
Sbjct:   38 GFWSVLVEQLEGFSSGVSVQSVLELSNGWRNLQSDGQDLLLSLQSDIFWPFDVSGQVSLWLDSLANTEVLWSRVSQWVLSLVRLSGLSTEWSWSNFLTWSHLFFQL 143

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BLAST of 60S ribosomal protein L7a vs. Ensembl Yeast
Match: NHP2 (Protein related to mammalian high mobility group (HMG) proteins; nuclear protein; essential for function of H/ACA-type snoRNPs, which are involved in 18S rRNA processing [Source:SGD;Acc:S000002367])

HSP 1 Score: 50.8322 bits (120), Expect = 2.305e-8
Identity = 27/99 (27.27%), Postives = 47/99 (47.47%), Query Frame = 2

Query:  500 IRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIR 796
            ++ GV+E+   + + +  +VVIA D+ P +++ H+P LC    VPY  +  K  LG     K  ++V  +   S  K       E    +FN    E++
Sbjct:   56 VKRGVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQ 154

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Yeast
Match: SNU13 (RNA binding protein; part of U3 snoRNP involved in rRNA processing, part of U4/U6-U5 tri-snRNP involved in mRNA splicing, similar to human 15.5K protein [Source:SGD;Acc:S000000752])

HSP 1 Score: 48.1358 bits (113), Expect = 1.032e-7
Identity = 20/57 (35.09%), Postives = 34/57 (59.65%), Query Frame = 2

Query:  500 IRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQ 670
            ++ G  E T  + +  ++ +++A D +PIEI+LHLP LC    VPY  +  +  LG+
Sbjct:   33 LKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGR 89

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Nematostella
Match: EDO47245 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RN14])

HSP 1 Score: 293.893 bits (751), Expect = 6.055e-100
Identity = 143/233 (61.37%), Postives = 176/233 (75.54%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERE 874
            VNPL E RP+NF IG DIQPKRDL+RFV+WP+YV+LQRQKS+L +RLK+P  INQF  A+D+ +   + KLL KYRPE+K EK ARL  +A ++ EGK E    KP L++YG+  IT+LVE KKAQ+VVIAHDVDPIEIV+ LPALCRKM VPYCI+KGKA LG++V KK  +A+ +  V  EDK  LN L E + TN+N R DEIRKH GGGIMG KS A   K++K + RE
Sbjct:   28 VNPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLNNLIESVKTNYNERFDEIRKHWGGGIMGPKSLAATAKVEKAKLRE 260

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Nematostella
Match: EDO48688 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RID9])

HSP 1 Score: 46.9802 bits (110), Expect = 1.076e-6
Identity = 21/75 (28.00%), Postives = 41/75 (54.67%), Query Frame = 2

Query:  485 TKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALV 709
            +K   +R GV+E+   + + +   V++A DV PI+++ H+P +C    +PY  +  K  LG     K  +++ L+
Sbjct:   54 SKAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSKVDLGASSLTKRPTSIVLI 128

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Medaka
Match: RPL7A (ribosomal protein L7a [Source:NCBI gene;Acc:101163674])

HSP 1 Score: 316.235 bits (809), Expect = 2.975e-108
Identity = 152/239 (63.60%), Postives = 185/239 (77.41%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFE RPKNF IGQDIQPKRDLTRFVKWP+YVRLQRQ+SIL KRLK+P  INQF  A+D+  A  + KL  KYRPE+KQEK  RL  RA ++  GK +T   +P ++R GV  +TTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG++V +KTC++VA   V  EDK  L KL E + TN+N+R +EIR+H GG +MG KS A+I KL+K + +E A KLG
Sbjct:   28 VNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYVRLQRQRSILYKRLKVPPAINQFTQALDRQTATQLFKLAHKYRPETKQEKKQRLLARAEQKAAGKGDTPTKRPPVLRAGVNTVTTLVESKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSVAFTQVNPEDKGALAKLVEAIKTNYNDRFEEIRRHWGGNLMGPKSTARIAKLEKAKAKELATKLG 266

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Medaka
Match: snu13a (small nuclear ribonucleoprotein 13 [Source:NCBI gene;Acc:101175271])

HSP 1 Score: 53.1434 bits (126), Expect = 1.481e-8
Identity = 23/57 (40.35%), Postives = 35/57 (61.40%), Query Frame = 2

Query:  500 IRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQ 670
            +R G  E T  + +  A+ +V+A D +P+EI+LHLP LC    VPY  ++ K  LG+
Sbjct:   35 LRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Medaka
Match: nhp2 (NHP2 ribonucleoprotein [Source:NCBI gene;Acc:101168479])

HSP 1 Score: 50.0618 bits (118), Expect = 2.352e-7
Identity = 24/69 (34.78%), Postives = 38/69 (55.07%), Query Frame = 2

Query:  500 IRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVAL 706
            IR GV+E+   + + +  +VV+A D  PIE+  HLP +C    +PY  +  K +  Q+    TC+ V L
Sbjct:   58 IRRGVKEVQKFINKGEKGIVVLAGDTLPIEVYCHLPVMCEDRSLPYAYIPSKVVSQQL----TCAGVHL 122

[Close]

BLAST of 60S ribosomal protein L7a vs. Ensembl Medaka
Match: nhp2 (NHP2 ribonucleoprotein [Source:NCBI gene;Acc:101168479])

HSP 1 Score: 50.0618 bits (118), Expect = 2.657e-7
Identity = 24/70 (34.29%), Postives = 37/70 (52.86%), Query Frame = 2

Query:  500 IRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALV 709
            IR GV+E+   + + +  +VV+A D  PIE+  HLP +C    +PY  +  K  LG     K  + V L+
Sbjct:   58 IRRGVKEVQKFINKGEKGIVVLAGDTLPIEVYCHLPVMCEDRSLPYAYIPSKVDLGSAAGSKRPTCVILI 127

[Close]

BLAST of 60S ribosomal protein L7a vs. Planmine SMEST
Match: SMESG000020535.1 (SMESG000020535.1)

HSP 1 Score: 484.182 bits (1245), Expect = 1.300e-174
Identity = 238/239 (99.58%), Postives = 239/239 (100.00%), Query Frame = 2

Query:  176 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 892
            VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVA+EDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG
Sbjct:   36 VNPLFESRPKNFAIGQDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNAKSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVAAEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIMGLKSQAKILKLKKIQERENAVKLG 274

[Close]

BLAST of 60S ribosomal protein L7a vs. Planmine SMEST
Match: SMESG000027686.1 (SMESG000027686.1)

HSP 1 Score: 57.3806 bits (137), Expect = 3.554e-9
Identity = 26/82 (31.71%), Postives = 45/82 (54.88%), Query Frame = 2

Query:  509 GVREITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQIVRKKTCSAVALVNVASEDKAPLNKLTE 754
            GV+ +   + +K+  +V+IA DV PI++V+H+P LC    VPYC L  +  +G     K   A+ ++       +  NKL++
Sbjct:   61 GVKSVPKAIRKKRKGIVIIAGDVTPIDVVIHIPKLCETANVPYCFLPCRRDVGIACGSKKSIAIVMIECDDAYASKFNKLSK 142

The following BLAST results are available for this feature:

BLAST of 60S ribosomal protein L7a vs. Ensembl Human
BLAST of 60S ribosomal protein L7a vs. Ensembl Celegans
BLAST of 60S ribosomal protein L7a vs. Ensembl Fly
BLAST of 60S ribosomal protein L7a vs. Ensembl Zebrafish
BLAST of 60S ribosomal protein L7a vs. Ensembl Xenopus
BLAST of 60S ribosomal protein L7a vs. Ensembl Mouse
BLAST of 60S ribosomal protein L7a vs. UniProt/SwissProt
BLAST of 60S ribosomal protein L7a vs. TrEMBL
BLAST of 60S ribosomal protein L7a vs. Ensembl Cavefish
BLAST of 60S ribosomal protein L7a vs. Ensembl Sea Lamprey
BLAST of 60S ribosomal protein L7a vs. Ensembl Yeast
BLAST of 60S ribosomal protein L7a vs. Ensembl Nematostella
BLAST of 60S ribosomal protein L7a vs. Ensembl Medaka
BLAST of 60S ribosomal protein L7a vs. Planmine SMEST

BLAST of 60S ribosomal protein L7a vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RPL7A	5.620e-107	62.76	ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC...	[more]
RPL7A	5.620e-107	62.76	ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC...	[more]
RPL7A	1.861e-58	64.96	ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC...	[more]
RPL7A	1.861e-58	64.96	ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC...	[more]
RPL7A	5.538e-55	60.14	ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC...	[more]

BLAST of 60S ribosomal protein L7a vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 4


Match Name	E-value	Identity	Description
rpl-7A	2.347e-95	60.78	60S ribosomal protein L7a [Source:UniProtKB/Swiss...	[more]
rpl-7A	7.689e-91	56.90	60S ribosomal protein L7a [Source:UniProtKB/Swiss...	[more]
Y73B3A.18	2.602e-32	63.37	pep chromosome:WBcel235:X:48483:60752:1 gene:WBGen...	[more]
Y73B3A.18	9.119e-25	73.33	pep chromosome:WBcel235:X:48483:60774:1 gene:WBGen...	[more]

BLAST of 60S ribosomal protein L7a vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RpL7A	5.282e-96	58.40	gene:FBgn0014026 transcript:FBtr0345293	[more]
RpL7A	5.282e-96	58.40	gene:FBgn0014026 transcript:FBtr0070916	[more]
RpL7A	5.282e-96	58.40	gene:FBgn0014026 transcript:FBtr0343329	[more]
RpL7A	5.282e-96	58.40	gene:FBgn0014026 transcript:FBtr0343328	[more]
RpL7A	5.282e-96	58.40	gene:FBgn0014026 transcript:FBtr0070915	[more]

BLAST of 60S ribosomal protein L7a vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rpl7a	1.819e-106	61.92	ribosomal protein L7a [Source:ZFIN;Acc:ZDB-GENE-03...	[more]
rpl7a	2.029e-106	61.92	ribosomal protein L7a [Source:ZFIN;Acc:ZDB-GENE-03...	[more]
snu13a	4.356e-8	38.60	SNU13 homolog, small nuclear ribonucleoprotein a (...	[more]
snu13b	4.356e-8	38.60	SNU13 homolog, small nuclear ribonucleoprotein b (...	[more]
nhp2	4.102e-7	29.41	NHP2 ribonucleoprotein homolog (yeast) [Source:NCB...	[more]

BLAST of 60S ribosomal protein L7a vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3


Match Name	E-value	Identity	Description
rpl7a	7.362e-108	64.02	ribosomal protein L7a [Source:NCBI gene;Acc:447981...	[more]
snu13	3.076e-8	41.07	small nuclear ribonucleoprotein 13 [Source:NCBI ge...	[more]
nhp2	7.859e-8	34.29	NHP2 ribonucleoprotein [Source:NCBI gene;Acc:39458...	[more]

BLAST of 60S ribosomal protein L7a vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Rpl7a	3.574e-107	62.76	ribosomal protein L7A [Source:MGI Symbol;Acc:MGI:1...	[more]
Gm14214	1.096e-83	55.65	predicted gene 14214 [Source:MGI Symbol;Acc:MGI:36...	[more]
Snu13	7.802e-8	38.60	SNU13 homolog, small nuclear ribonucleoprotein (U4...	[more]
Nhp2	1.568e-7	32.94	NHP2 ribonucleoprotein [Source:MGI Symbol;Acc:MGI:...	[more]

BLAST of 60S ribosomal protein L7a vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q2TBQ5\|RL7A_BOVIN	1.802e-106	62.76	60S ribosomal protein L7a OS=Bos taurus OX=9913 GN...	[more]
sp\|P12970\|RL7A_MOUSE	2.500e-106	62.76	60S ribosomal protein L7a OS=Mus musculus OX=10090...	[more]
sp\|P62425\|RL7A_RAT	2.699e-106	62.76	60S ribosomal protein L7a OS=Rattus norvegicus OX=...	[more]
sp\|Q4R5C2\|RL7A_MACFA	2.699e-106	62.76	60S ribosomal protein L7a OS=Macaca fascicularis O...	[more]
sp\|P62424\|RL7A_HUMAN	2.699e-106	62.76	60S ribosomal protein L7a OS=Homo sapiens OX=9606 ...	[more]

BLAST of 60S ribosomal protein L7a vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
E9LR67	1.679e-109	63.60	60S ribosomal L7a-like protein OS=Phragmatopoma la...	[more]
A0A1S3KA42	1.032e-107	63.18	60S ribosomal protein L7a OS=Lingula unguis OX=757...	[more]
A0A4W6BLZ0	1.119e-105	63.18	Ribosomal_L7Ae domain-containing protein OS=Lates ...	[more]
A0A3B3QCC5	1.940e-105	63.18	Ribosomal_L7Ae domain-containing protein OS=Paramo...	[more]
A0A3B3QA53	2.193e-105	63.18	Ribosomal_L7Ae domain-containing protein OS=Paramo...	[more]

BLAST of 60S ribosomal protein L7a vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rpl7a	3.002e-105	61.09	ribosomal protein L7a [Source:NCBI gene;Acc:103021...	[more]
rpl7a	4.067e-105	61.09	ribosomal protein L7a [Source:NCBI gene;Acc:103021...	[more]
rpl7a	4.677e-105	61.09	ribosomal protein L7a [Source:NCBI gene;Acc:103021...	[more]
snu13a	4.190e-8	38.60	NHP2-like protein 1 [Source:NCBI gene;Acc:10304087...	[more]
snu13b	4.619e-8	38.60	small nuclear ribonucleoprotein 13 [Source:NCBI ge...	[more]

BLAST of 60S ribosomal protein L7a vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
nhp2	4.018e-11	34.57	NHP2 ribonucleoprotein homolog (yeast) [Source:NCB...	[more]

BLAST of 60S ribosomal protein L7a vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 5


Match Name	E-value	Identity	Description
RPL8B	6.654e-83	52.38	Ribosomal 60S subunit protein L8B; required for pr...	[more]
RPL8A	1.077e-81	52.63	Ribosomal 60S subunit protein L8A; required for pr...	[more]
YLL044W_mRNA	1.631e-10	35.85	Dubious open reading frame; unlikely to encode a f...	[more]
NHP2	2.305e-8	27.27	Protein related to mammalian high mobility group (...	[more]
SNU13	1.032e-7	35.09	RNA binding protein; part of U3 snoRNP involved in...	[more]

BLAST of 60S ribosomal protein L7a vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO47245	6.055e-100	61.37	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO48688	1.076e-6	28.00	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of 60S ribosomal protein L7a vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4


Match Name	E-value	Identity	Description
RPL7A	2.975e-108	63.60	ribosomal protein L7a [Source:NCBI gene;Acc:101163...	[more]
snu13a	1.481e-8	40.35	small nuclear ribonucleoprotein 13 [Source:NCBI ge...	[more]
nhp2	2.352e-7	34.78	NHP2 ribonucleoprotein [Source:NCBI gene;Acc:10116...	[more]
nhp2	2.657e-7	34.29	NHP2 ribonucleoprotein [Source:NCBI gene;Acc:10116...	[more]

BLAST of 60S ribosomal protein L7a vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2


Match Name	E-value	Identity	Description
SMESG000020535.1	1.300e-174	99.58	SMESG000020535.1	[more]
SMESG000027686.1	3.554e-9	31.71	SMESG000027686.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30001701 ID=SMED30001701|Name=60S ribosomal protein L7a|organism=Schmidtea mediterranea sexual|type=transcript|length=930bp
TAACTACTTATTTAAACTTTGTTTAAATTGTTAAAATTATTAAAATATAA
ATTTTTTAAAATTAGATAAGATGCCTAACAACAAAGCCAAACTTTTAGCT
AAGAAGAAGAAGTCTGTCAAAAAGGTAGCTCCAGTACCTGAAATTATAAA
ATCAAAGACCATCAAAAAGAAGATTGTAAATCCTCTTTTCGAATCTAGAC
CTAAAAATTTTGCAATTGGTCAAGATATTCAACCAAAACGTGACTTAACT
AGATTTGTCAAATGGCCAAAATATGTCAGACTTCAAAGACAAAAGTCAAT
TCTTAATAAAAGATTGAAAATGCCAGCTGTAATCAATCAATTTAATAATG
CTATTGACAAGCCTAATGCTAAATCGATTGTTAAACTTTTGAGTAAATAT
AGACCTGAAAGCAAGCAAGAAAAAGTCGCAAGACTTAAATTAAGAGCTTC
AGAAAGAGTTGAAGGAAAGCCTGAAACTGTTGAAACTAAACCAGCTCTTA
TCAGATATGGTGTCAGAGAAATCACTACATTAGTTGAGCAAAAGAAAGCT
CAAATGGTTGTGATTGCTCATGATGTTGACCCTATTGAAATTGTTTTGCA
CTTGCCAGCATTGTGCAGAAAAATGGGTGTACCTTATTGCATTCTTAAAG
GAAAAGCTATTCTTGGTCAAATTGTTAGAAAGAAGACTTGCTCTGCTGTG
GCTTTGGTCAACGTAGCCTCTGAAGATAAAGCCCCATTGAACAAATTAAC
GGAAATAATGATGACTAACTTCAATAACAGAGGTGATGAAATCAGAAAAC
ACGTTGGTGGTGGAATTATGGGACTTAAATCACAAGCTAAGATTTTGAAA
TTGAAAAAAATTCAAGAAAGAGAAAATGCAGTTAAACTTGGTTGAGTTGT
ATTTAAATAAACTTTGGAATTAAAAAAAAA

protein sequence of SMED30001701-orf-1

>SMED30001701-orf-1 ID=SMED30001701-orf-1|Name=SMED30001701-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=275bp
MPNNKAKLLAKKKKSVKKVAPVPEIIKSKTIKKKIVNPLFESRPKNFAIG
QDIQPKRDLTRFVKWPKYVRLQRQKSILNKRLKMPAVINQFNNAIDKPNA
KSIVKLLSKYRPESKQEKVARLKLRASERVEGKPETVETKPALIRYGVRE
ITTLVEQKKAQMVVIAHDVDPIEIVLHLPALCRKMGVPYCILKGKAILGQ
IVRKKTCSAVALVNVASEDKAPLNKLTEIMMTNFNNRGDEIRKHVGGGIM
GLKSQAKILKLKKIQERENAVKLG*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000026	gut
PLANA:0000028	Category 2 cell
PLANA:0000101	muscle cell
PLANA:0000120	progenitor cell
PLANA:0000429	neoblast
PLANA:0002032	epidermal cell
PLANA:0002109	X1 cell
PLANA:0003116	parenchymal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR038524	Ribosomal_L7A/L8_sf
IPR018492	Ribosomal_L7Ae/L8/Nhp2
IPR001921	Ribosomal_L7A/L8
IPR029064	L30e-like
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45
IPR004037	Ribosomal_L7Ae_CS

Vocabulary: **cellular component**
Term	Definition
GO:1990904	ribonucleoprotein complex
GO:0030529	intracellular ribonucleoprotein complex
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0005925	focal adhesion
GO:0016020	membrane
GO:0022625	cytosolic large ribosomal subunit
GO:0042788	polysomal ribosome
GO:0070062	extracellular exosome

Vocabulary: **biological process**
Term	Definition
GO:0042254	ribosome biogenesis
GO:0000470	maturation of LSU-rRNA
GO:0006412	translation

Vocabulary: **molecular function**
Term	Definition
GO:0003723	RNA binding
GO:0045296	cadherin binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001921	Ribosomal protein L7A/L8	PRINTS	PR00882	RIBOSOMALL7A	coord: 105..118 score: 68.83 coord: 140..160 score: 48.92 coord: 81..100 score: 51.82 coord: 61..78 score: 77.27 coord: 201..225 score: 45.09 coord: 44..61 score: 77.78 coord: 233..253 score: 59.74
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 163..176 score: 69.48 coord: 189..203 score: 45.45 coord: 144..158 score: 37.88 coord: 179..189 score: 73.14
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 142..217 e-value: 2.0E-21 score: 75.5
IPR038524	Ribosomal protein L7A/L8 superfamily	GENE3D	G3DSA:3.30.1330.210		coord: 65..249 e-value: 5.1E-78 score: 262.9
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 16..273
None	No IPR available	PANTHER	PTHR23105:SF141	60S RIBOSOMAL PROTEIN L7A-RELATED	coord: 16..273
IPR004037	Ribosomal protein L7Ae conserved site	PROSITE	PS01082	RIBOSOMAL_L7AE	coord: 182..199
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	SSF55315	L30e-like	coord: 104..244