SMED30001680

Overview
NameSMED30001680
Smed IDSMED30001680
Length (bp)1566
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30001680 (SMED30001680) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30001680 (SMED30001680) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30001680 (SMED30001680) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30001680 (SMED30001680) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30001680

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 12

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30001680SMESG000002033.1 Contig3932GPL15192PMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
neuronSMED30001680SMESG000002033.1 dd_Smed_v4_884_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
neuronSMED30001680SMESG000002033.1 dd_Smed_v4_884_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult colorimetric in situ hybridization evidence
muscle cellSMED30001680SMESG000002033.1 dd_Smed_v4_884_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30001680SMESG000002033.1 dd_Smed_v4_884_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
parapharyngeal cellSMED30001680SMESG000002033.1 dd_Smed_v4_884_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
pharynxSMED30001680SMESG000002216.1 SMESG000002124.1 SMESG000002025.1 SMESG000002023.1 SMESG000002011.1 SMESG000002004.1 SMESG000002219.1 SMESG000002211.1 SMESG000002032.1 SMESG000002033.1 dd_Smed_v6_884_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30001680SMESG000002216.1 SMESG000002124.1 SMESG000002025.1 SMESG000002023.1 SMESG000002011.1 SMESG000002004.1 SMESG000002219.1 SMESG000002211.1 SMESG000002032.1 SMESG000002033.1 dd_Smed_v6_884_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cholinergic neuronSMED30001680SMESG000002216.1 SMESG000002124.1 SMESG000002025.1 SMESG000002023.1 SMESG000002011.1 SMESG000002004.1 SMESG000002219.1 SMESG000002211.1 SMESG000002032.1 SMESG000002033.1 dd_Smed_v6_884_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30001680SMESG000002216.1 SMESG000002124.1 SMESG000002025.1 SMESG000002023.1 SMESG000002011.1 SMESG000002004.1 SMESG000002219.1 SMESG000002211.1 SMESG000002032.1 SMESG000002033.1 dd_Smed_v6_884_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
secretory systemSMED30001680SMESG000002216.1 SMESG000002124.1 SMESG000002025.1 SMESG000002023.1 SMESG000002011.1 SMESG000002004.1 SMESG000002219.1 SMESG000002211.1 SMESG000002032.1 SMESG000002033.1 dd_Smed_v6_884_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30001680SMESG000002033.1 dd_Smed_v4_884_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30001680 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.004870:6353..9545 +7601
Homology
BLAST of SMED30001680 vs. Planmine SMEST
Match: SMESG000002033.1 (SMESG000002033.1)

HSP 1 Score: 298.516 bits (763), Expect = 1.640e-123
Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 2
Query:  143 EFFNELNGIYQNEQYLEDIINKTRAENISIFISSKPFRNIVDQALNKFKIKSDECVETCFKIISFIIANVLTDKIEVKLSQLKFEIEKICFRILDGQKLEINNQLTFLFESERAYFSQDAIVKEYAEFNAENKISIYRNGRILCKCLKRYLTVSI 607
            EFFNELNGIY+NEQYLEDIINKTRAENISIFISSKPFRNIVDQALNKFKIKSDECVETCFKIISFIIANVLTDKIEVKLSQLKFEIEKICFRILDGQKLEINNQLTFLFESERAYFSQDAIVKEYAEFN ENKI+ YRNGRILCKCLKRYLT +I
Sbjct:  394 EFFNELNGIYRNEQYLEDIINKTRAENISIFISSKPFRNIVDQALNKFKIKSDECVETCFKIISFIIANVLTDKIEVKLSQLKFEIEKICFRILDGQKLEINNQLTFLFESERAYFSQDAIVKEYAEFNDENKIANYRNGRILCKCLKRYLTNTI 548          

HSP 2 Score: 164.851 bits (416), Expect = 1.640e-123
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 1
Query:  643 IQNTIQRLGDVVPNFIRHSLFINFNKALKGALQVEFLCSPKAPQSYFNVTDAEKREFERQRDVKISLEELIIGLNNYHC 879
            + NTIQRLGDVVPNFIRHSLFINFNKALKGALQVEFLCSPKAPQSYFNVTDAEKREFERQRDVKISLEELIIGLNNYHC
Sbjct:  544 LTNTIQRLGDVVPNFIRHSLFINFNKALKGALQVEFLCSPKAPQSYFNVTDAEKREFERQRDVKISLEELIIGLNNYHC 622          
BLAST of SMED30001680 vs. Planmine SMEST
Match: SMESG000002021.1 (SMESG000002021.1)

HSP 1 Score: 132.88 bits (333), Expect = 8.014e-50
Identity = 73/170 (42.94%), Postives = 106/170 (62.35%), Query Frame = 2
Query:  140 SEFFNELNGIYQNEQYLEDIINKTRAENISIFISSKPFRNIVDQALNKFKIKSDECVETCFKIISFIIANVLTDKIEVKLSQLKFEIEKICFRILDGQKLEINNQLTFLFESERAYFSQDAIVKE---------YAEFNAENKISIY-----RNGRILCKCLKRYLTVSI 607
            + FF E +G Y ++Q+L+DI  K R ENI +FIS+  F+ IV++A++KFK K D+CV+ C+ IISFII  VL   IE KLS LK +I+KI  ++LD +KLEI N L FLF+SE  YF+Q  +++          ++     N +  +     +NG+IL   LK YL  +I
Sbjct:   11 TNFFGEYSGKYHSDQHLDDINKKNRTENIPVFISTTLFKKIVNEAMDKFKEKVDKCVKLCYNIISFIIHEVLITDIETKLSPLKMDIQKISRKVLDEKKLEIENYLKFLFKSEHTYFTQATMIESLLGHQFQPAFSPGTPTNSVPEFEDLPTKNGKILKDSLKTYLINAI 180          

HSP 2 Score: 84.3445 bits (207), Expect = 8.014e-50
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 1
Query:  649 NTIQRLGDVVPNFIRHSLFINFNKALKGALQVEFLCSPKAPQSYFNVTDAEKREFERQRDVKISLEELIIGLNNYHC 879
            N I++LGDV+P+FI+ SLFI+F+++L  AL+ E L S K+  SYF++TD EK E ER R+ KI+LEE    LN+Y C
Sbjct:  178 NAIRKLGDVIPSFIKQSLFIDFSESLTDALETEILYSEKS-LSYFSLTDQEKEEIERLRETKINLEEYSSKLNDYQC 253          
BLAST of SMED30001680 vs. Planmine SMEST
Match: SMESG000002021.1 (SMESG000002021.1)

HSP 1 Score: 132.88 bits (333), Expect = 9.459e-50
Identity = 73/169 (43.20%), Postives = 106/169 (62.72%), Query Frame = 2
Query:  143 EFFNELNGIYQNEQYLEDIINKTRAENISIFISSKPFRNIVDQALNKFKIKSDECVETCFKIISFIIANVLTDKIEVKLSQLKFEIEKICFRILDGQKLEINNQLTFLFESERAYFSQDAIVKE---------YAEFNAENKISIY-----RNGRILCKCLKRYLTVSI 607
            +FF E +G Y ++Q+L+DI  K R ENI +FIS+  F+ IV++A++KFK K D+CV+ C+ IISFII  VL   IE KLS LK +I+KI  ++LD +KLEI N L FLF+SE  YF+Q  +++          ++     N +  +     +NG+IL   LK YL  +I
Sbjct:    8 DFFGEYSGKYHSDQHLDDINKKNRTENIPVFISTTLFKKIVNEAMDKFKEKVDKCVKLCYNIISFIIHEVLITDIETKLSPLKMDIQKISRKVLDEKKLEIENYLKFLFKSEHTYFTQATMIESLLGHQFQPAFSPGTPTNSVPEFEDLPTKNGKILKDSLKTYLINAI 176          

HSP 2 Score: 84.3445 bits (207), Expect = 9.459e-50
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 1
Query:  649 NTIQRLGDVVPNFIRHSLFINFNKALKGALQVEFLCSPKAPQSYFNVTDAEKREFERQRDVKISLEELIIGLNNYHC 879
            N I++LGDV+P+FI+ SLFI+F+++L  AL+ E L S K+  SYF++TD EK E ER R+ KI+LEE    LN+Y C
Sbjct:  174 NAIRKLGDVIPSFIKQSLFIDFSESLTDALETEILYSEKS-LSYFSLTDQEKEEIERLRETKINLEEYSSKLNDYQC 249          
BLAST of SMED30001680 vs. Planmine SMEST
Match: SMESG000002216.1 (SMESG000002216.1)

HSP 1 Score: 130.183 bits (326), Expect = 7.298e-49
Identity = 81/165 (49.09%), Postives = 100/165 (60.61%), Query Frame = 2
Query:  143 EFFNELNGIYQNEQYLEDIINKTRAENISIFISSKPFRNIVDQALNKFKIKSDECVETCFKIISFIIANVLTDKIEVKLSQLKFEIEKICFRILDGQKLEINNQLTFLFESERAYFSQ----DA----------IVKEYAEFNAENKISIYRNGRILCKCLKRYL 595
            E F + +G Y ++QYLEDI  K R ENI +FISS  F+ IV++AL  FK K DECV  C  IISFII  +L   IE KLS LK +I+KI  R+L  +KLEI   LTFLF+SE  YF+Q    DA          +  + A  + EN  +  RNGRIL  CLK YL
Sbjct:  394 ELFADYSGKYYSDQYLEDINKKNRTENIPVFISSTLFKKIVNEALLNFKKKVDECVNVCCHIISFIIEEILIMDIEDKLSPLKMDIQKISRRVLSEKKLEIEKYLTFLFQSEHTYFTQAIVIDAGVVPQLQPALVTGQNAPQSTENLQT--RNGRILKDCLKNYL 556          

HSP 2 Score: 83.5741 bits (205), Expect = 7.298e-49
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  637 NKIQNTIQRLGDVVPNFIRHSLFINFNKALKGALQVEFLCSPKAPQSYFNVTDAEKREFERQRDVKISLEELIIGLNNYHC 879
            N + N +++LGDV+P+FI+ SLFI+F+K+L  AL+ E L S K   SYF++TD EK E ER R  K+ LEE    LN+YHC
Sbjct:  554 NYLINAVRKLGDVIPSFIKQSLFIDFSKSLIEALETEILYS-KMSLSYFSLTDQEKVEIERLRQTKLMLEEYSSKLNDYHC 633          
BLAST of SMED30001680 vs. Planmine SMEST
Match: SMESG000002216.1 (SMESG000002216.1)

HSP 1 Score: 130.183 bits (326), Expect = 8.769e-49
Identity = 81/165 (49.09%), Postives = 100/165 (60.61%), Query Frame = 2
Query:  143 EFFNELNGIYQNEQYLEDIINKTRAENISIFISSKPFRNIVDQALNKFKIKSDECVETCFKIISFIIANVLTDKIEVKLSQLKFEIEKICFRILDGQKLEINNQLTFLFESERAYFSQ----DA----------IVKEYAEFNAENKISIYRNGRILCKCLKRYL 595
            E F + +G Y ++QYLEDI  K R ENI +FISS  F+ IV++AL  FK K DECV  C  IISFII  +L   IE KLS LK +I+KI  R+L  +KLEI   LTFLF+SE  YF+Q    DA          +  + A  + EN  +  RNGRIL  CLK YL
Sbjct:  302 ELFADYSGKYYSDQYLEDINKKNRTENIPVFISSTLFKKIVNEALLNFKKKVDECVNVCCHIISFIIEEILIMDIEDKLSPLKMDIQKISRRVLSEKKLEIEKYLTFLFQSEHTYFTQAIVIDAGVVPQLQPALVTGQNAPQSTENLQT--RNGRILKDCLKNYL 464          

HSP 2 Score: 83.5741 bits (205), Expect = 8.769e-49
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  637 NKIQNTIQRLGDVVPNFIRHSLFINFNKALKGALQVEFLCSPKAPQSYFNVTDAEKREFERQRDVKISLEELIIGLNNYHC 879
            N + N +++LGDV+P+FI+ SLFI+F+K+L  AL+ E L S K   SYF++TD EK E ER R  K+ LEE    LN+YHC
Sbjct:  462 NYLINAVRKLGDVIPSFIKQSLFIDFSKSLIEALETEILYS-KMSLSYFSLTDQEKVEIERLRQTKLMLEEYSSKLNDYHC 541          
The following BLAST results are available for this feature:
BLAST of SMED30001680 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001680 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001680 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001680 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001680 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001680 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001680 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001680 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001680 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001680 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001680 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001680 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001680 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001680 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000002033.11.640e-12396.13SMESG000002033.1[more]
SMESG000002021.18.014e-5042.94SMESG000002021.1[more]
SMESG000002021.19.459e-5043.20SMESG000002021.1[more]
SMESG000002216.17.298e-4949.09SMESG000002216.1[more]
SMESG000002216.18.769e-4949.09SMESG000002216.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30001680 ID=SMED30001680|Name=SMED30001680|organism=Schmidtea mediterranea sexual|type=transcript|length=1566bp
TCTGAACTCGAGTACACCGTTAGCGTTATAAAGTTAATGTCGGTAAATTA
TTACACGCATCTCATCAAATGTATAAATAACTGTTTTTTTAAATCTGTAT
TTTGCCAATGATATCGTTATTTAAAAACTTGATTTTGGTTCAGAATTTTT
TAATGAATTAAATGGAATATATCAAAACGAGCAATACCTTGAAGATATTA
TCAACAAAACTCGGGCTGAAAACATTTCAATCTTCATCAGTTCGAAGCCA
TTCAGAAATATTGTCGACCAAGCGCTGAATAAATTTAAAATTAAATCGGA
TGAATGCGTCGAGACGTGCTTTAAGATCATTTCCTTTATCATTGCCAATG
TCCTGACGGACAAGATTGAAGTGAAACTCTCCCAGCTCAAATTTGAAATT
GAGAAAATTTGCTTCAGAATTCTCGATGGTCAAAAATTAGAAATAAACAA
CCAGTTAACATTTCTATTCGAAAGCGAACGCGCTTACTTCTCGCAGGACG
CAATCGTCAAGGAATACGCTGAATTTAATGCCGAAAATAAAATTTCCATT
TATAGAAATGGTAGAATATTATGTAAATGCTTGAAAAGGTATTTAACTGT
GAGTATTATCATCCTTATGCCATTTCATTACATATAAACAAAATTCAGAA
TACAATCCAAAGATTGGGAGATGTTGTCCCCAACTTCATCAGGCACAGTT
TGTTCATAAATTTCAATAAAGCCCTTAAAGGGGCCCTACAAGTTGAATTT
CTATGCTCACCAAAAGCGCCTCAATCATACTTCAACGTCACTGATGCGGA
AAAACGTGAATTTGAACGTCAAAGAGATGTTAAAATATCATTAGAGGAGC
TTATTATTGGGTTAAATAATTATCATTGCTGATTCCTCTCCTTGCTAGCG
GTTACATTCAGCGACAATTTTGCCACTAGGATTCGGATTGGGATATAACT
TGACTTACTTTTTCCTTTTTTCTTTTATCGGTGTAATTTCTGATGTTGAT
ATCTAGAATAATATTTCAATTTACATAAACGATCAACCATTGCTACTATA
TATATATTTTATTGAATCCTTCTCCAAGTAACCTCCATCCATAACAATCT
GTTGTAAGACTTCAAATAAAAGTTTTAAATTTGATATTAGTGAAAACTCA
ATAAGAGCACTGGGATGCATTCGGATAATCAGTACTAGTAAGTGTTTTGT
TCGACCACGGCAATTATCGCGAGTATATTAATGGGTAAAATATATCCGTG
TACTCTACTAGTGTGTATAAATCTTTTATGCATCCGGCTGACGGCCACCA
CACACCACAAGTTACTGCAACGGACCCGTGACCGTGAAGACCCGACTGTG
ATTAACAGAGTGTTGGAACGTAAAAGGCCTGATATAGTGACATTCAGAGG
ATTAATTCCGGATGTCAATAAAATTGTTGGGGTTATGTGATTTTCAATAT
TATAATGAATTAAAAACAAAATTTGGGAAAATAAATTAATTAATTAGAAA
TAATCAAAAAATCGAAATCTATATTTCCCGGGGAAATGGTGTGCCGACGT
CAATCGACAAAACGGG
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protein sequence of SMED30001680-orf-1

>SMED30001680-orf-1 ID=SMED30001680-orf-1|Name=SMED30001680-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=102bp
MLEKVFNCEYYHPYAISLHINKIQNTIQRLGDVVPNFIRHSLFINFNKAL
KGALQVEFLCSPKAPQSYFNVTDAEKREFERQRDVKISLEELIIGLNNYH
C*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0000463cholinergic neuron
PLANA:0000484secretory system
PLANA:0003116parenchymal cell
PLANA:0003117parapharyngeal cell
Vocabulary: INTERPRO
TermDefinition
IPR000375Dynamin_central
Vocabulary: molecular function
TermDefinition
GO:0005525GTP binding