Expressed conserved protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30001663 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 13
Homology
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A267GJT7 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig009462g1 PE=4 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.469e-18 Identity = 56/158 (35.44%), Postives = 88/158 (55.70%), Query Frame = 1 Query: 133 YKLNLITPSLYSKAGSSNFQDSIVEKFAHYLKYRSDTEFNLKCKFDPVPGLAFIHSFEDFEERFLIHSEYAIIIASPASQKALNQFIPRLLVFLTSKPIWQNRFIFVILGKVKVLS---NLVVNEPIEFS---VDNWENDDEESWIRLFDLIKVKWEP 588 +KL L+T YSK + D E FA +L+ +S++EF++ CK G AFI F FE FL SEY +I+ S S + F+PRLLVFLT + +W NRFI +G V + + + + P+ F+ ++W + +SW L+ ++++ W P Sbjct: 203 FKLILMTSRSYSKESND---DGRGEAFAQFLQQKSESEFSMSCKIPSSSGSAFITDFNKFENEFLRVSEYCLIVVSEESVRRFRIFLPRLLVFLTRRSVWSNRFIIACVGNVDLRESEVDFLTHPPVYFTSTEAESWST-EVQSWQILYRILRITWAP 356 HSP 2 Score: 94.7449 bits (234), Expect = 1.575e-15 Identity = 56/159 (35.22%), Postives = 85/159 (53.46%), Query Frame = 1 Query: 133 YKLNLITPSLYSKAGSSN---FQDSIVEKFAHYLKYRSDTEFNLKCKFDPVPGLAFIHSFEDFEERFLIHSEYAIIIASPASQKALNQFIPRLLVFLTSKPIWQNRFIFVILGKVKVLSNL----VVNEPIEFSVDNWEN--DDEESWIRLFDLIKVKW 582 YK +++ P +Y +A S QD +F +LK ++ F + C G AFI +F FE FL SEY III S + K LN+F+ RLLVF+T + +W++RFIF+ LG+ + L L V++ I F E + E W L+ ++ + W Sbjct: 13 YKFSILAPEVYCQAIKSAEPVKQDDAAYRFGLFLKQWAEEVFGMSCFVPSSSGAAFIENFNTFESDFLAKSEYCIIIISEVAAKPLNRFLARLLVFVTMRAMWRSRFIFIALGEFEGLKKLHLDVSVHDLIIFKSRTEEGWMVETECWKALYFILNISW 171
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A267EUB7 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig018063g1 PE=4 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.795e-18 Identity = 58/158 (36.71%), Postives = 90/158 (56.96%), Query Frame = 1 Query: 133 YKLNLITPSLYSKAGSSNFQDSIVEKFAHYLKYRSDTEFNLKCKFDPVPGLAFIHSFEDFEERFLIHSEYAIIIASPASQKALNQFIPRLLVFLTSKPIWQNRFIFVILGKVKVLS---NLVVNEPIEFS---VDNWENDDEESWIRLFDLIKVKWEP 588 +KL L+T YSK SN D E FA +L+ +S++EF++ CK G AFI F FE FL SEY +I+ S S + F+PRLLVFLT + +W NRFI +G V + + + + P+ F+ ++W + + +SW L+ ++++ W P Sbjct: 204 FKLILMTSRSYSK--ESN-DDGRGEAFAQFLQQKSESEFSMSCKIPSSSGSAFITDFNKFENEFLRVSEYCLIVVSEESVRRFRIFLPRLLVFLTRRSVWSNRFIIACVGNVDLRESEVDFLTHPPVYFTSTEAESW-STEVQSWQILYRILRITWAP 357 HSP 2 Score: 97.0561 bits (240), Expect = 2.831e-16 Identity = 56/164 (34.15%), Postives = 86/164 (52.44%), Query Frame = 1 Query: 133 YKLNLITPSLYSKAGSSN---FQDSIVEKFAHYLKYRSDTEFNLKCKFDPVPGLAFIHSFEDFEERFLIHSEYAIIIASPASQKALNQFIPRLLVFLTSKPIWQNRFIFVILGKVKVLSNL----VVNEPIEFSVDNWEN--DDEESWIRLFDLIKVKWEPHVD 597 YK +++ P +Y +A S QD +F +LK ++ F + C G AFI +F FE FL SEY +II S + K LN+F+ RLLVF+T + +W++RFIF+ LG+ + L L V++ I F E + E W L+ ++ + W D Sbjct: 14 YKFSILAPEVYCQAIKSAEPVKQDDAAYRFGLFLKQWAEEVFGMSCFVPSSSGAAFIENFNTFESDFLAKSEYCVIIISEVAAKPLNRFLARLLVFVTMRAMWRSRFIFIALGEFEGLKKLHLDVSVHDLIIFKSRTEEGWMVETECWKALYFILNISWASLGD 177
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A267FUN4 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig030938g1 PE=4 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.364e-18 Identity = 58/158 (36.71%), Postives = 90/158 (56.96%), Query Frame = 1 Query: 133 YKLNLITPSLYSKAGSSNFQDSIVEKFAHYLKYRSDTEFNLKCKFDPVPGLAFIHSFEDFEERFLIHSEYAIIIASPASQKALNQFIPRLLVFLTSKPIWQNRFIFVILGKVKVLS---NLVVNEPIEFS---VDNWENDDEESWIRLFDLIKVKWEP 588 +KL L+T YSK SN D E FA +L+ +S++EF++ CK G AFI F FE FL SEY +I+ S S + F+PRLLVFLT + +W NRFI +G V + + + + P+ F+ ++W + + +SW L+ ++++ W P Sbjct: 203 FKLILMTSRSYSK--ESN-DDGRGEAFAQFLQQKSESEFSMSCKIPSSSGSAFITDFNKFENEFLRVSEYCLIVVSEESVRRFRIFLPRLLVFLTRRSVWSNRFIIACVGNVDLRESEVDFLTHPPVYFTSTEAESW-STEVQSWQILYRILRITWAP 356 HSP 2 Score: 97.0561 bits (240), Expect = 2.745e-16 Identity = 57/164 (34.76%), Postives = 86/164 (52.44%), Query Frame = 1 Query: 133 YKLNLITPSLYSKAGSSN---FQDSIVEKFAHYLKYRSDTEFNLKCKFDPVPGLAFIHSFEDFEERFLIHSEYAIIIASPASQKALNQFIPRLLVFLTSKPIWQNRFIFVILGKVKVLSNL----VVNEPIEFSVDNWEN--DDEESWIRLFDLIKVKWEPHVD 597 YK +++ P +Y +A S QD +F +LK ++ F + C G AFI +F FE FL SEY III S + K LN+F+ RLLVF+T + +W++RFIF+ LG+ + L L V++ I F E + E W L+ ++ + W D Sbjct: 13 YKFSILAPEVYCQAIKSAEPVKQDDAAYRFGLFLKQWAEEVFGMSCFVPSSSGAAFIENFNTFESDFLAKSEYCIIIISEVAAKPLNRFLARLLVFVTMRAMWRSRFIFIALGEFEGLKKLHLDVSVHDLIIFKSRTEEGWMVETECWKALYFILNISWASLGD 176
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A1I8F2N9 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 8.246e-17 Identity = 60/162 (37.04%), Postives = 92/162 (56.79%), Query Frame = 1 Query: 133 YKLNLITPSLYSKAGSSNFQDSIVEKFAHYLKYRSDTEFNLKCKFDPVPGLAFIHSFEDFEERFLIHSEYAIIIASPASQKALNQFIPRLLVFLTSKPIWQNRFI-------FVILGKVKVLSNLVVNEPIEFS---VDNWENDDEESWIRLFDLIKVKWEP 588 +KL L+T YSK SN D E FA +L+ +S++EF++ CK G AFI F FE FL SEY +I+ S S + F+PRLLVFLT + +W NRFI FV L + +V + + + P+ F+ ++W + + +SW L+ ++++ W P Sbjct: 155 FKLILMTSRSYSK--ESN-DDGRGEAFAQFLQQKSESEFSMSCKIPSSSGSAFITDFNKFENEFLRVSEYCLIVVSEESVRRFRIFLPRLLVFLTRRSVWSNRFIIACVVIAFVDLRESEV--DFLTHPPVYFTSTEAESW-STEVQSWQILYRILRITWAP 310 HSP 2 Score: 82.0333 bits (201), Expect = 1.199e-11 Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = 1 Query: 247 FNLKCKFDPVPGLAFIHSFEDFEERFLIHSEYAIIIASPASQKALNQFIPRLLVFLTSKPIWQNRFIFVILGKVKVLSNL----VVNEPIEFSVDNWEN--DDEESWIRLFDLIKVKWEPHVD 597 F + C G AFI +F FE FL SEY III S + K LN+F+ RLLVF+T + +W++RFIF+ LG+ + L L V++ I F E + E W L+ ++ + W D Sbjct: 6 FGMSCFVPSSSGAAFIENFNTFESDFLAKSEYCIIIISEVAAKPLNRFLARLLVFVTMRAMWRSRFIFIALGEFEGLKKLHLDVSVHDLIIFKSRTEEGWMVETECWKALYFILNISWASLGD 128
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A183N575 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS23450 PE=4 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.894e-16 Identity = 59/161 (36.65%), Postives = 89/161 (55.28%), Query Frame = 1 Query: 127 MDYKLNLITPS--LYSKAGSSNFQDSIVEKFAHYLKYRSDTEFNLKCKFDPVPGLAFIH-SFEDFEERFLIHSEYAIIIASPASQKALNQFIPRLLVFLTSKPIWQNRFIFVILGKVKVLSN----LVVNEPIEF---SVDNWENDDEESWIRLFDLIKVK 579 M +K L+T L + +++ +D+ FA YL ++ ++ L + G AF+H SF FEERFL HSEYA++I S + LN PR LVFLT+K W R + + L + L N L+ + PI F S + W + D+ESW+++ +LIK K Sbjct: 1 MKFKFTLLTSWTLLPTSIPNTDCEDNEAILFAQYLTEYTENKYGLNVFWPRQRGEAFLHNSFNSFEERFLTHSEYALLIVSGQNASCLNCIYPRFLVFLTAKKSWTERILIIFLKQPTYLLNFDLSLLKHPPILFNDDSTNQWTH-DQESWMKIAELIKRK 160
BLAST of Expressed conserved protein vs. Planmine SMEST
Match: SMESG000057766.1 (SMESG000057766.1) HSP 1 Score: 2635.14 bits (6829), Expect = 0.000e+0 Identity = 1409/1414 (99.65%), Postives = 1412/1414 (99.86%), Query Frame = 1 Query: 127 MDYKLNLITPSLYSKAGSSNFQDSIVEKFAHYLKYRSDTEFNLKCKFDPVPGLAFIHSFEDFEERFLIHSEYAIIIASPASQKALNQFIPRLLVFLTSKPIWQNRFIFVILGKVKVLSNLVVNEPIEFSVDNWENDDEESWIRLFDLIKVKWEPHVDKLVPDSSPNNKLHVTENDNNDPMVNYSQISEFENNENRSLNFSQKVETTNLPDPLSVIQHKPLEFENHSETVPXXXXXXXQVKNLANRSIQGSNVVLENLTFSKAESDNITNPKVFTESYANTEESIFTLTRESXXXXXXXXXXXXXXXXXXXXXXXXXDSDTYSEQSFECAPVNLTELIEENDDEGSDDIQINKIYHQHQEVAEDPVSDFLYTKPVRTEGNHIDSSLAEIKSDGTEVSIESIRSNPDDNSKTLISNDVNSVKDIHTDKNILNFKSNSDDTKDKNINKRFDLNVDDVESENIEISPKNLTNILEEISRKEVNSVNKINLDKISQLSKVNEKGLEGAEDSSNNLSTITGSCLLTSMVSDLKGKETPGEISEENINSAKKKNESQLIQKGXXXXXXXXXXXXXVTINDKCLRTSNDSSLKEKENPEIAVKPIIRSIQYHDMLLLYTKDXXXXXXXXXXXXXXHSGAHFEDIPHSVEEYDLLHKNENGTETKKNISNEILGNTIKDTSGDSCLIEKVFIETSSEANTSLVNAKNISQVKGKKNEISNEVPFDITKAKGIPTHNDSYLKEKEYSEAKFEPNTHLDKDADLLFIXXXXXXXXXXXXXXXISANIIKEKCLSTQDDSCLKEKELLVISSEEITNLPKDNNTSQINEKDTKQKGNTPNEILVNSIKDKCLSNQCDSCLKKEESLAICSEETTNLSKDNNMLQVNDKDTEGEENKSNEMPSEAIKVKCSQIYTDSGLDESETRDVNVVFCPPDINKNVGKMDPTADIKSVNNSFDETPKCDSETNEIFLNRNGQIFFESQAFEFTASPAKYDTNNEEYSNPNILTPSFEMEKSFDNNGKAISIRDANLQKETDHEIEDIITNFEGTEVGYSISTEYDEASEITKKKMNYLXXXXXXXXXXXXDIFYRPIVIENDMSKNVDEFMGSCSLNMGEIYQFTKNDMFVSSENGKILEKDSIININFEPIAIDSSKTEYVDIDIGSRITFSSVDIYTNVSGNKNQNPVPKRRXXXXXXXXXXXXVGLPNANPVKTQDIELTAGSSDAFNFRNTGNKRKAFDEIVVNEDCEIISTIGNEEKQFVEHFGKTNVRTNQEKTTNWTNSDQNFEINDKASNTLNLSQHRLNLKHSSTKRERQPHFKGSSHISFSFLSKFKTIHTFIKRIVFRENRVSSCCQQEEHSNHKEDSITRCLHSPWCVLLVFVGGTLASPYWVELTKNISQRAVEPGFLVDTIASTALHEEKVIGKYNHYF 4368 MDYKLNLITPSLYSKAGSSNFQD+IVEKFAHYLKYRSDTEFNLKCKFDPVPGLAFIHSFEDFEERFLIHSEYAIIIASPASQKALNQFIPRLLVFLTSKPIWQNRFIFVILGKVKVLSNLVVNEPIEFSVDNWENDDEESWIRLFDLIKVKWEPHVDKLVPDSSPNNKLHVTENDNNDPMVNYSQISEFENNENRSLNFSQKVETTNLPDPLSVIQHKPLEFENHSETVPKTTTTKTQVKNLANRSIQGSNVVLENLTFSKAESDNITNPKVFTESYANTEESIFTLTRESNENQLKQEMEQKEENNSESSQISNNDSDTYSEQSFECAPVNLTELIEENDDEGSDDIQINKIYHQHQEVAEDPVSDFLYTKPVRTEGNHIDSSLAEIKSDGTEVSIESIRSNPDDNSKTLISNDVNSVKDIHTDKNILNFKSNSDDTKDKNINKRFDLNVDDVESENIEISPKNLTNILEEISRKEVNSVNKINLDKISQLSKVNEKGLEGAEDSSNNLSTITGSCLLTSMVSDLKGKETPGEISEENINSAKKKNESQLIQKGTEEKENTSSENSSVTINDKCLRTSNDSSLKEKENPEIAVKPIIRSIQYHDMLLLYTKDTEEKESTSKEIAAEHSGAHFEDIPHSVEEYDLLHKNENGTETKKNISNEILGNTIKDTSGDSCLIEK FIETSSEANTSLVNAKNISQVKGKKNEISNEVPFDITKAKGIPTHNDSYLKEKEYSEAKFEPNTHLDKDADLLFINKK+ESKEKENAANEISANIIKEKCLSTQDDSCLKEKELLVISSEEITNLPKDNNTSQINEKDTKQKGNTPNEILVNSIKDKCLSNQCDSCLKKEESLAICSEETTNLSKDNNMLQVNDKDTEGEENKSNEMPSEAIKVKCSQIYTDSGLDESETRDVNVVFCPPDINKNVGKMDPTADIKSVNNSFDETPKCDSETNEIFLNRNGQIFFESQAFEFTASPAKYDTNNEEYSNPNILTPSFEMEKSFDNNGKAISIRDANL KETDHEIEDIITNFEGTEVGYSISTEYDEASEITKKKMNYLSNNEKEISSSENDIFYRPIVIENDMSKNVDEFMGSCSLNMGEIYQFTKNDMFVSSENGKILEKDSIININFEPIAIDSSKTEYVDIDIGSRITFSSVDIYTNVSGNKNQNPVPKRR+IGNIEEEIAGEVGLPNANPVKTQDIELTAGSSDAFNFRNTGNKRKAFDEIVVNEDCEIISTIGNEEKQFVEHFGKTNVRTNQEKTTNWTNSDQNFEINDKASNTLNLSQHRLNLKHSSTKRERQPHFKGSSHISFSFLSKFKTIHTFIKRIVFRENRVSSCCQQEEHSNHKEDSITRCLHSPWCVLLVFVGGTLASPYWVELTKNISQRAVEPGFLVDTIASTALHEEKVIGKYNHYF Sbjct: 1 MDYKLNLITPSLYSKAGSSNFQDAIVEKFAHYLKYRSDTEFNLKCKFDPVPGLAFIHSFEDFEERFLIHSEYAIIIASPASQKALNQFIPRLLVFLTSKPIWQNRFIFVILGKVKVLSNLVVNEPIEFSVDNWENDDEESWIRLFDLIKVKWEPHVDKLVPDSSPNNKLHVTENDNNDPMVNYSQISEFENNENRSLNFSQKVETTNLPDPLSVIQHKPLEFENHSETVPKTTTTKTQVKNLANRSIQGSNVVLENLTFSKAESDNITNPKVFTESYANTEESIFTLTRESNENQLKQEMEQKEENNSESSQISNNDSDTYSEQSFECAPVNLTELIEENDDEGSDDIQINKIYHQHQEVAEDPVSDFLYTKPVRTEGNHIDSSLAEIKSDGTEVSIESIRSNPDDNSKTLISNDVNSVKDIHTDKNILNFKSNSDDTKDKNINKRFDLNVDDVESENIEISPKNLTNILEEISRKEVNSVNKINLDKISQLSKVNEKGLEGAEDSSNNLSTITGSCLLTSMVSDLKGKETPGEISEENINSAKKKNESQLIQKGTEEKENTSSENSSVTINDKCLRTSNDSSLKEKENPEIAVKPIIRSIQYHDMLLLYTKDTEEKESTSKEIAAEHSGAHFEDIPHSVEEYDLLHKNENGTETKKNISNEILGNTIKDTSGDSCLIEKGFIETSSEANTSLVNAKNISQVKGKKNEISNEVPFDITKAKGIPTHNDSYLKEKEYSEAKFEPNTHLDKDADLLFINKKKESKEKENAANEISANIIKEKCLSTQDDSCLKEKELLVISSEEITNLPKDNNTSQINEKDTKQKGNTPNEILVNSIKDKCLSNQCDSCLKKEESLAICSEETTNLSKDNNMLQVNDKDTEGEENKSNEMPSEAIKVKCSQIYTDSGLDESETRDVNVVFCPPDINKNVGKMDPTADIKSVNNSFDETPKCDSETNEIFLNRNGQIFFESQAFEFTASPAKYDTNNEEYSNPNILTPSFEMEKSFDNNGKAISIRDANLHKETDHEIEDIITNFEGTEVGYSISTEYDEASEITKKKMNYLSNNEKEISSSENDIFYRPIVIENDMSKNVDEFMGSCSLNMGEIYQFTKNDMFVSSENGKILEKDSIININFEPIAIDSSKTEYVDIDIGSRITFSSVDIYTNVSGNKNQNPVPKRRSIGNIEEEIAGEVGLPNANPVKTQDIELTAGSSDAFNFRNTGNKRKAFDEIVVNEDCEIISTIGNEEKQFVEHFGKTNVRTNQEKTTNWTNSDQNFEINDKASNTLNLSQHRLNLKHSSTKRERQPHFKGSSHISFSFLSKFKTIHTFIKRIVFRENRVSSCCQQEEHSNHKEDSITRCLHSPWCVLLVFVGGTLASPYWVELTKNISQRAVEPGFLVDTIASTALHEEKVIGKYNHYF 1414 The following BLAST results are available for this feature:
BLAST of Expressed conserved protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Expressed conserved protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Expressed conserved protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Expressed conserved protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Expressed conserved protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Expressed conserved protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Expressed conserved protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Expressed conserved protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Expressed conserved protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Expressed conserved protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Expressed conserved protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Expressed conserved protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Expressed conserved protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Expressed conserved protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30001663 ID=SMED30001663|Name=Expressed conserved protein|organism=Schmidtea mediterranea sexual|type=transcript|length=4638bpback to top protein sequence of SMED30001663-orf-1 >SMED30001663-orf-1 ID=SMED30001663-orf-1|Name=SMED30001663-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1415bp MDYKLNLITPSLYSKAGSSNFQDSIVEKFAHYLKYRSDTEFNLKCKFDPVback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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