SMED30001652
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30001652 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Alignments
SMED30001652 aligns in the following genomic locations:
Homology
BLAST of SMED30001652 vs. TrEMBL
Match: A0A1W7RA66 (Methyltransferase-like protein OS=Hadrurus spadix OX=141984 PE=4 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.636e-12 Identity = 44/135 (32.59%), Postives = 66/135 (48.89%), Query Frame = 3 Query: 75 TKWLYNESGRYQEDTVYAGLN----CRVARAICDGNRLVGSLLEGEKCVYLSSNNTVFEQYEYQVFVEENNCKNTRLEWKWASGKIVPEGAIVGGSDA-GNVLFIGRTAIDGRLLVGSYRADKGKITVGYKNRVH 464 +WL+ SG+ V G + VARA +G+ + G LL CVY+S + Y+V N + ++LEWK+ G VP GA+ GG+ A G L+IGR +G + VG + + + Y R H Sbjct: 13 AEWLFGSSGQVPPCAVQGGYDGGDTIYVARAHHNGDNIPGKLLPSHGCVYVSWGGEEHSHHSYEVLC---NPQGSQLEWKYCGGGDVPSGAVQGGTTADGEPLYIGRHEHEGTMTVGKVQPSHQVLYIAYGGREH 144
BLAST of SMED30001652 vs. TrEMBL
Match: A0A2I9LP56 (Methyltransferase-like protein OS=Centruroides hentzi OX=88313 PE=4 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.889e-12 Identity = 45/146 (30.82%), Postives = 69/146 (47.26%), Query Frame = 3 Query: 75 TKWLYNESGRYQEDTVYAGLNCR----VARAICDGNRLVGSLLEGEKCVYLSSNNTVFEQYEYQVFVEENNCKNTRLEWKWASGKIVPEGAIVGGSDA-GNVLFIGRTAIDGRLLVGSYRADKGKITVGYKNRVHIIPGCDIL-CK 494 +W+ SG V AG + VARA +G+ + G L+ C Y+ + YQV N + +LEW++ SG +P GA+ GG A G L+IGR +G + VG + G + + + R H P ++L CK Sbjct: 13 AEWVPASSGHVPPCAVQAGYDVSDTLYVARAHHNGDNIPGKLVPSHGCCYVPWGGEEHSHHSYQVLC---NPEGVQLEWRFTSGGDIPPGAVQGGMTADGEPLYIGRHDHEGTMTVGKVQPSHGVLYIAFGGREHSYPDYEVLVCK 155
BLAST of SMED30001652 vs. TrEMBL
Match: Q686R4 (CG10527-like methyltransferase (Fragment) OS=Mesobuthus gibbosus OX=123226 GN=mt PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 6.518e-10 Identity = 37/118 (31.36%), Postives = 59/118 (50.00%), Query Frame = 3 Query: 114 DTVYAGLNCRVARAICDGNRLVGSLLEGEKCVYLSSNNTVFEQYEYQVFVEENNCKNTRLEWKWASGKIVPEGAIVGG-SDAGNVLFIGRTAIDGRLLVGSYRADKGKITVGYKNRVH 464 D++Y VARA +G+ + G L+ C Y+ +EYQV N + +LEW++ASG +P GAI GG + G L+IGR +G + +G + G + + + H Sbjct: 8 DSIY------VARAHHNGDNIPGKLVPSHGCCYVPWGGEEHRHHEYQVLC---NPEGMQLEWRFASGGDIPPGAIQGGMTSDGEPLYIGRHEHEGTMTIGKXQPSHGVVYISFGGGEH 116
BLAST of SMED30001652 vs. TrEMBL
Match: Q686V2 (CG10527-like methyltransferase (Fragment) OS=Mesobuthus gibbosus OX=123226 GN=mettrans PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 7.449e-10 Identity = 37/118 (31.36%), Postives = 59/118 (50.00%), Query Frame = 3 Query: 114 DTVYAGLNCRVARAICDGNRLVGSLLEGEKCVYLSSNNTVFEQYEYQVFVEENNCKNTRLEWKWASGKIVPEGAIVGG-SDAGNVLFIGRTAIDGRLLVGSYRADKGKITVGYKNRVH 464 D++Y VARA +G+ + G L+ C Y+ +EYQV N + +LEW++ASG +P GAI GG + G L+IGR +G + +G + G + + + H Sbjct: 8 DSIY------VARAHHNGHNIPGKLVPSHGCCYVPWGGEEHRHHEYQVLC---NPEGMQLEWRFASGGDIPPGAIQGGMTSDGEPLYIGRHEHEGTMTIGKIQPSHGVVYISFGGGEH 116
BLAST of SMED30001652 vs. TrEMBL
Match: Q686U9 (CG10527-like methyltransferase (Fragment) OS=Mesobuthus gibbosus OX=123226 GN=mt PE=4 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 7.683e-10 Identity = 37/118 (31.36%), Postives = 59/118 (50.00%), Query Frame = 3 Query: 114 DTVYAGLNCRVARAICDGNRLVGSLLEGEKCVYLSSNNTVFEQYEYQVFVEENNCKNTRLEWKWASGKIVPEGAIVGG-SDAGNVLFIGRTAIDGRLLVGSYRADKGKITVGYKNRVH 464 D++Y VARA +G+ + G L+ C Y+ +EYQV N + +LEW++ASG +P GAI GG + G L+IGR +G + +G + G + + + H Sbjct: 8 DSIY------VARAHHNGDNIPGKLVPSHGCCYVPWGGEEHRHHEYQVLC---NPEGMQLEWRFASGGDIPPGAIQGGMTSDGEPLYIGRHEHEGTMTIGKIQPSHGVVYISFGGGEH 116
BLAST of SMED30001652 vs. Planmine SMEST
Match: SMESG000027142.1 (SMESG000027142.1) HSP 1 Score: 323.553 bits (828), Expect = 6.427e-114 Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 3 Query: 33 MSNDKRLGDIVDGQTKWLYNESGRYQEDTVYAGLNCRVARAICDGNRLVGSLLEGEKCVYLSSNNTVFEQYEYQVFVEENNCKNTRLEWKWASGKIVPEGAIVGGSDAGNVLFIGRTAIDGRLLVGSYRADKGKITVGYKNRVHIIPGCDILCKVSSES 509 MSNDKRLGDIVDGQTKWLYNESG+YQEDTVYAGLNCRVARAICDGNRLVGSLLEGEKCVYLSSNNTVFEQYEYQVFVEENNCKNTRLEWKWASGKIVPEGAIVGGSDAGNVLFIGRTAIDGRLLVGSYRADKGKITVGYKNRVHIIPGCDILCKVSSES Sbjct: 1 MSNDKRLGDIVDGQTKWLYNESGKYQEDTVYAGLNCRVARAICDGNRLVGSLLEGEKCVYLSSNNTVFEQYEYQVFVEENNCKNTRLEWKWASGKIVPEGAIVGGSDAGNVLFIGRTAIDGRLLVGSYRADKGKITVGYKNRVHIIPGCDILCKVSSES 159
BLAST of SMED30001652 vs. Planmine SMEST
Match: SMESG000027140.1 (SMESG000027140.1) HSP 1 Score: 141.739 bits (356), Expect = 1.992e-42 Identity = 68/147 (46.26%), Postives = 95/147 (64.63%), Query Frame = 3 Query: 57 DIVDGQTKWLYNESGRYQEDTVYAGLNCRVARAICDGNRLVGSLLEGEKCVYLSSNNTVFEQYEYQVFVEENNCKNTRLEWKWASGKIVPEGAIVGGSDAGNVLFIGRTAIDGRLLVGSYRADKGKITVGYKNRVHIIPGCDILCKV 497 D D +T W+Y++SG+ VYAGL + RAI D R++G+L++GE ++ N V + Y YQV V ++L WK+ +GKI+PEGAI GG D+ +LF+GR I+G LLVGS+R D G + G+ N VH + GCDILCKV Sbjct: 2 DQTDNETDWVYSDSGKKVPGAVYAGLKSYIIRAIHDDQRIIGTLIDGEDFARVAYNGAVHKDYAYQVLVNTKTPDCSKLVWKFTTGKIIPEGAIRGGHDSSIMLFVGRAVINGELLVGSFRVDSGILYTGF-NSVHSVAGCDILCKV 147
BLAST of SMED30001652 vs. Planmine SMEST
Match: SMESG000027124.1 (SMESG000027124.1) HSP 1 Score: 117.472 bits (293), Expect = 1.775e-32 Identity = 58/148 (39.19%), Postives = 81/148 (54.73%), Query Frame = 3 Query: 57 DIVDGQTKWLYNESGRYQEDTVYAGLNCRVARAICDGNRLVGSLLEGEKCVYLSSNNTVFEQYEYQVFVEENNCKNTRLEWKWASGKIVPEGAIVGGSDAGNVLFIGRTAIDGRLLVGSYRADKGKITVGYKNRVHIIPGCDILCKVS 500 D VD + W Y + G + VY G + + RAI +G+++ G+ C ++ +Y YQ+ VE N EWKW G +PEGAI+ G D VLF+GR A +G+LL+GSYR D G + + YK V GCDILC+V Sbjct: 45 DEVDNKGMWQYGQKGEIPDKAVYGGCDSYIIRAIHKEQTFIGTIVRGDLCGHVPFRKWSHSKYIYQIMVENRNI----FEWKWTDGTFLPEGAIIAGEDNATVLFVGRAAYNGQLLIGSYRPDNGIVYLPYKGEVRERVGCDILCRVD 188
BLAST of SMED30001652 vs. Planmine SMEST
Match: SMESG000029906.1 (SMESG000029906.1) HSP 1 Score: 88.1965 bits (217), Expect = 1.388e-21 Identity = 44/137 (32.12%), Postives = 75/137 (54.74%), Query Frame = 3 Query: 81 WLYNESGRYQEDTVYAGLNCRVARAICDGNRLVGSLLEGEKCVYLSSNNTVFEQYEYQVFVEENNCKNTRLEWKWASGKIVPEGAIVGGSDAGNVLFIGRTAIDGRLLVGSYRADKGKITVGYKNRVHIIPGCDILC 491 W +G D+V AG N +ARA+ +G + G ++ GE C Y+ + EY+V V+ +N EWK + G ++P+G+++GGSD G L+IGR + +LL G ++ + G + Y ++ + D+LC Sbjct: 18 WQKASNGHIPNDSVNAG-NSYIARAVYNGEYIPGKIVRGENCAYICYDGKEISCSEYEVLVDTHNFGGQAYEWKSSRGSVIPKGSVIGGSDEGRPLYIGRARVADKLLAGKFQPEHGCTYIPYDSQENRKEDYDVLC 153
BLAST of SMED30001652 vs. Planmine SMEST
Match: SMESG000074377.1 (SMESG000074377.1) HSP 1 Score: 86.6557 bits (213), Expect = 4.918e-21 Identity = 50/143 (34.97%), Postives = 68/143 (47.55%), Query Frame = 3 Query: 81 WLYNESGRYQEDTVYAGLNCRVARAICDGNRLVGSLLEGEKCVYLSSNNTVFEQYEYQVFVEENNCKNTRLEWKWASGKIVPEGAIVGGSDAGNVLFIGRTAIDGRLLVGSYRADKGKITVGYKNRVHIIPGCDILCKVSSES 509 W +G TV AG C V RA +G + G L EG K VY+S Y+ VE N N +WK+ G VP GAIVGG+D G L+I R+ ++G +VG Y G + H G ++LC V+ + Sbjct: 18 WQKASNGEIPHRTVKAGGKCFVGRAQQNGQYIPGKLYEGHKGVYVSYGGKEICVNNYEALVETNVLHNDGFQWKYVDGNNVPSGAIVGGTDNGQPLYIARSEVNGEPVVGKYFPPHGCAYFPFGGEEHRKTGVEVLCCVAKSA 160 The following BLAST results are available for this feature:
BLAST of SMED30001652 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30001652 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30001652 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30001652 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30001652 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30001652 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30001652 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30001652 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30001652 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30001652 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30001652 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30001652 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30001652 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30001652 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30001652 ID=SMED30001652|Name=SMED30001652|organism=Schmidtea mediterranea sexual|type=transcript|length=746bpback to top protein sequence of SMED30001652-orf-1 >SMED30001652-orf-1 ID=SMED30001652-orf-1|Name=SMED30001652-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=160bp MSNDKRLGDIVDGQTKWLYNESGRYQEDTVYAGLNCRVARAICDGNRLVGback to top Annotated Terms
The following terms have been associated with this transcript:
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