Y box protein-1

Overview
NameY box protein-1
Smed IDSMED30001546
Length (bp)453
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Y box protein-1 (SMED30001546) t-SNE clustered cells

Violin plots show distribution of expression levels for Y box protein-1 (SMED30001546) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Y box protein-1 (SMED30001546) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Y box protein-1 (SMED30001546) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30001546

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 18

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30001546h1SMcG0013548 SmedASXL_009658SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30001546h1SMcG0013548 SmedASXL_009658SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30001546h1SMcG0013548 SmedASXL_072287SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30001546h1SMcG0013548 SmedASXL_072287SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30001546h1SMcG0013550 SmedASXL_009658SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30001546h1SMcG0013550 SmedASXL_009658SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30001546h1SMcG0013550 SmedASXL_009659SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30001546h1SMcG0013550 SmedASXL_009659SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30001546h1SMcG0013550 SmedASXL_072287SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30001546h1SMcG0013550 SmedASXL_072287SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
gutSMED30001546h1SMcG0013550 SMED30004532smed_20140614PMID:26457503
Tu et al., 2015
whole organism asexual adult colorimetric in situ hybridization evidence
parenchymaSMED30001546h1SMcG0013550 SMED30004532smed_20140614PMID:26457503
Tu et al., 2015
whole organism asexual adult colorimetric in situ hybridization evidence
gutSMED30001546h1SMcG0013548 SMED30004532smed_20140614PMID:26457503
Tu et al., 2015
whole organism asexual adult colorimetric in situ hybridization evidence
parenchymaSMED30001546h1SMcG0013548 SMED30004532smed_20140614PMID:26457503
Tu et al., 2015
whole organism asexual adult colorimetric in situ hybridization evidence
Category 2 cellSMED30001546h1SMcG0013550 dd_Smed_v6_35_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30001546h1SMcG0013550 dd_Smed_v6_35_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Category 2 cellSMED30001546h1SMcG0013548 dd_Smed_v6_35_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30001546h1SMcG0013548 dd_Smed_v6_35_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX2 (Y-box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948])

HSP 1 Score: 73.559 bits (179), Expect = 1.614e-15
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 3
Query:   48 QVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVT 248
            QV+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   93 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVT 161          
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX2 (Y-box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948])

HSP 1 Score: 73.559 bits (179), Expect = 1.614e-15
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 3
Query:   48 QVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVT 248
            QV+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   93 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVT 161          
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX1 (Y-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8014])

HSP 1 Score: 71.2478 bits (173), Expect = 7.149e-15
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            ++V+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   57 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 126          
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX3 (Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428])

HSP 1 Score: 70.8626 bits (172), Expect = 1.334e-14
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            ++V+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   89 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 158          
BLAST of Y box protein-1 vs. Ensembl Human
Match: YBX3 (Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428])

HSP 1 Score: 70.0922 bits (170), Expect = 1.603e-14
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            ++V+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   89 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 158          
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-1 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:O62213])

HSP 1 Score: 73.9442 bits (180), Expect = 9.134e-17
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            ++V G VKWFN KNGYGFI+  + N  +DIFVH  +I   N      SL D EEV+FDIVEG+KGLEA +VT
Sbjct:   19 TKVKGTVKWFNVKNGYGFINRTDTN--EDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVT 88          
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-4 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5EDV3])

HSP 1 Score: 60.8474 bits (146), Expect = 1.281e-11
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 3
Query:   42 QSQVVGHVKWFNSKNGYGFISVDND-NSDKDIFVHFKSIAAGNA-----TSLADGEEVLFDIVEGAKGLEARNVT 248
            ++ V GHVKWF+ +  YGF++ D   + ++D FVH  +I   +       +L D E V+FDIVEG KG EA NVT
Sbjct:   86 ETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVT 160          
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-4 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5EDV3])

HSP 1 Score: 60.8474 bits (146), Expect = 1.281e-11
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 3
Query:   42 QSQVVGHVKWFNSKNGYGFISVDND-NSDKDIFVHFKSIAAGNA-----TSLADGEEVLFDIVEGAKGLEARNVT 248
            ++ V GHVKWF+ +  YGF++ D   + ++D FVH  +I   +       +L D E V+FDIVEG KG EA NVT
Sbjct:   86 ETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVT 160          
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-2 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91306])

HSP 1 Score: 60.8474 bits (146), Expect = 1.367e-11
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 3
Query:   51 VVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT------SLADGEEVLFDIVEGAKGLEARNVT 248
            + G VKW++    YGFIS   ++ +KDIFVH  +IA  +AT      +L D EEVLFD+VEG  G EA NVT
Sbjct:   66 LQGKVKWYSVLRRYGFIS--RNDGEKDIFVHQTAIAK-SATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVT 134          
BLAST of Y box protein-1 vs. Ensembl Celegans
Match: cey-3 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91398])

HSP 1 Score: 59.3066 bits (142), Expect = 4.085e-11
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 3
Query:   33 IMAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT-----SLADGEEVLFDIVEGAKGLEARNVT 248
            I+  + + G VKW++    YGFIS    + +KD+FVH  +I+  +       +LAD EEVLFD+V+G  G EA NVT
Sbjct:   58 IVLTAGLQGKVKWYSVLRRYGFIS--RSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVT 132          
BLAST of Y box protein-1 vs. Ensembl Fly
Match: yps (gene:FBgn0022959 transcript:FBtr0076027)

HSP 1 Score: 66.2402 bits (160), Expect = 2.549e-13
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 3
Query:   24 TNSIMAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            T  ++A ++V G VKWFN K+GYGFI  + +++ +D+FVH  +IA  N      S+ DGE V FD+V G KG EA NVT
Sbjct:   54 TKEVIA-TKVTGTVKWFNVKSGYGFI--NRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVT 129          
BLAST of Y box protein-1 vs. Ensembl Fly
Match: yps (gene:FBgn0022959 transcript:FBtr0305992)

HSP 1 Score: 66.2402 bits (160), Expect = 2.696e-13
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 3
Query:   24 TNSIMAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            T  ++A ++V G VKWFN K+GYGFI  + +++ +D+FVH  +IA  N      S+ DGE V FD+V G KG EA NVT
Sbjct:   54 TKEVIA-TKVTGTVKWFNVKSGYGFI--NRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVT 129          
BLAST of Y box protein-1 vs. Ensembl Fly
Match: lin-28 (gene:FBgn0035626 transcript:FBtr0077090)

HSP 1 Score: 48.521 bits (114), Expect = 2.395e-7
Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 3
Query:   54 VGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVT 248
            +G  KWFN   G+GF++  ND   +++FVH   I      SL + EEV F+    ++GLEA  V+
Sbjct:   40 LGKCKWFNVAKGWGFLT-PNDGG-QEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEATRVS 102          
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 72.0182 bits (175), Expect = 2.525e-15
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            ++V+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   37 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 106          
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 72.0182 bits (175), Expect = 2.525e-15
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            ++V+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   37 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 106          
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 71.633 bits (174), Expect = 3.981e-15
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            ++V+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   37 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 106          
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: lin28b (lin-28 homolog B (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-140811-1])

HSP 1 Score: 53.5286 bits (127), Expect = 6.057e-9
Identity = 26/69 (37.68%), Postives = 38/69 (55.07%), Query Frame = 3
Query:   57 GHVKWFNSKNGYGFISVDND-----NSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVT 248
            G+ KWFN + G+GFIS+ +      +   D+FVH   +      SL +GE+V F     +KGLE+  VT
Sbjct:   23 GYCKWFNVRMGFGFISMTSSEGKPVDPPLDVFVHQSKLVMEGFRSLREGEQVEFTFKRSSKGLESLRVT 91          
BLAST of Y box protein-1 vs. Ensembl Zebrafish
Match: LIN28A (si:ch1073-284b18.2 [Source:ZFIN;Acc:ZDB-GENE-110914-157])

HSP 1 Score: 49.6766 bits (117), Expect = 1.370e-7
Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 3
Query:   54 VGHVKWFNSKNGYGFISVDNDN-----SDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVT 248
            VG  KWFN + G+GF+S++  +     +  D+FVH   +      SL +GE V F   + +KGLE+  VT
Sbjct:   25 VGVCKWFNVRMGFGFLSMNTRDGVPLETPVDVFVHQSKLHMEGFRSLKEGESVEFTFKKSSKGLESVRVT 94          
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: hmgcs1 (3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:Xenbase;Acc:XB-GENE-942074])

HSP 1 Score: 71.633 bits (174), Expect = 5.273e-15
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            ++V+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   35 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 104          
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: hmgcs1 (3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:Xenbase;Acc:XB-GENE-942074])

HSP 1 Score: 70.8626 bits (172), Expect = 8.612e-15
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            ++V+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   43 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 112          
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: ybx3 (Y-box binding protein 3 [Source:NCBI gene;Acc:548572])

HSP 1 Score: 66.6254 bits (161), Expect = 1.949e-13
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVT 248
            ++V G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+V G KG EA NVT
Sbjct:   34 TKVQGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEKGAEAANVT 103          
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:100216028])

HSP 1 Score: 52.373 bits (124), Expect = 3.138e-8
Identity = 26/69 (37.68%), Postives = 36/69 (52.17%), Query Frame = 3
Query:   57 GHVKWFNSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVT 248
            GH KWFN + G+GFIS+ +          D+FVH   +      SL +GE V F   + +KG E+  VT
Sbjct:   35 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSSKGFESLRVT 103          
BLAST of Y box protein-1 vs. Ensembl Xenopus
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:100216028])

HSP 1 Score: 52.373 bits (124), Expect = 3.159e-8
Identity = 26/69 (37.68%), Postives = 36/69 (52.17%), Query Frame = 3
Query:   57 GHVKWFNSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVT 248
            GH KWFN + G+GFIS+ +          D+FVH   +      SL +GE V F   + +KG E+  VT
Sbjct:   59 GHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSSKGFESLRVT 127          
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx2 (Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372])

HSP 1 Score: 72.7886 bits (177), Expect = 1.233e-15
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 3
Query:   48 QVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVT 248
            QV+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   17 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVT 85          
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx2 (Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372])

HSP 1 Score: 73.1738 bits (178), Expect = 1.347e-15
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 3
Query:   48 QVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVT 248
            QV+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   94 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVT 162          
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx1 (Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146])

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-15
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            ++V+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   55 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 124          
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx3 (Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670])

HSP 1 Score: 71.2478 bits (173), Expect = 5.174e-15
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            ++V+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   81 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 150          
BLAST of Y box protein-1 vs. Ensembl Mouse
Match: Ybx3 (Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670])

HSP 1 Score: 71.2478 bits (173), Expect = 5.932e-15
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            ++V+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   81 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 150          
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P45441|YBX2B_XENLA (Y-box-binding protein 2-B OS=Xenopus laevis OX=8355 GN=ybx2-b PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.972e-15
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 3
Query:   27 NSIMAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVT 248
            N  +  +QV G VKWFN +NGYGFI  + ++S +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   34 NKKLLATQVQGTVKWFNVRNGYGFI--NRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVT 109          
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P41824|YBOXH_APLCA (Y-box factor homolog OS=Aplysia californica OX=6500 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.944e-15
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVT 248
            SQV G VKWFN K+GYGFI  + D++ +D+FVH  +I   N      S+ DGE+V FD+VEG KG EA NVT
Sbjct:   31 SQVSGTVKWFNVKSGYGFI--NRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVT 100          
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|Q9Y2T7|YBOX2_HUMAN (Y-box-binding protein 2 OS=Homo sapiens OX=9606 GN=YBX2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 7.752e-15
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 3
Query:   48 QVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVT 248
            QV+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   93 QVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVT 161          
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|P21574|YBX2A_XENLA (Y-box-binding protein 2-A OS=Xenopus laevis OX=8355 GN=ybx2-a PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.092e-14
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVT 248
            +QV G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   40 TQVQGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVT 109          
BLAST of Y box protein-1 vs. UniProt/SwissProt
Match: sp|Q9KN00|CSPA_VIBCH (Cold shock-like protein CspA OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=cspA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.712e-14
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 3
Query:   36 MAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVT 248
            M+Q ++ G VKWFN   G+GFIS   DN  +D+FVHFKSI +    +LA+G+ V F + +G KG +A  VT
Sbjct:    1 MSQ-KMTGSVKWFNETKGFGFIS--QDNGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQGKKGPQAAQVT 68          
BLAST of Y box protein-1 vs. TrEMBL
Match: I1ZIB0 (Y box protein-1 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.567e-34
Identity = 77/99 (77.78%), Postives = 84/99 (84.85%), Query Frame = 3
Query:   33 IMAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTXXXXXXXXXXAQH---DHSNNRGGDRD 320
            IM  SQV GHVKWF+SKNGYGFISVD+DN+ KDIFVH  SI A NATSLADGEEVLFDIV+GAKGLEARNVTGP+GGDV+GG  +   D SNNR GDRD
Sbjct:   17 IMTASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSDRSNNR-GDRD 114          
BLAST of Y box protein-1 vs. TrEMBL
Match: A0A3N5Z465 (Cold-shock protein OS=Alteromonas sp. U0105 OX=2259342 GN=DRW07_17875 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.870e-15
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNV 245
            S+V G VKWFN++ GYGF++   DN +KD+FVHF++I A    +L +G+ V F+I EG KGL+A NV
Sbjct:    2 SKVTGTVKWFNAEKGYGFLT--QDNGEKDVFVHFRAIVAEGYKTLLEGQRVEFEIEEGQKGLQAANV 66          
BLAST of Y box protein-1 vs. TrEMBL
Match: A0A3D8M3N3 (Cold-shock protein OS=Alteromonas aestuariivivens OX=1938339 GN=DXV75_15155 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.795e-15
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVT 248
            S+V G VKWFN+  GYGF++   D+ DKD+FVHF++I +    +LA+G+ V F++ +G KGL+A NVT
Sbjct:    2 SKVTGTVKWFNADKGYGFLT--QDSGDKDVFVHFRAIVSEGYKTLAEGQRVEFEVEQGQKGLQAANVT 67          
BLAST of Y box protein-1 vs. TrEMBL
Match: G0MVG4 (CBN-CEY-1 protein OS=Caenorhabditis brenneri OX=135651 GN=Cbn-cey-1 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.478e-15
Identity = 44/79 (55.70%), Postives = 52/79 (65.82%), Query Frame = 3
Query:   24 TNSIMAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            T   +  ++V G VKWFN KNGYGFI+  + N  +DIFVH  +I   N      SL D EEVLFDIVEG+KGLEA NVT
Sbjct:   12 TEKPVKATKVKGTVKWFNVKNGYGFINRTDTN--EDIFVHQTAIINNNPNKYLRSLGDNEEVLFDIVEGSKGLEASNVT 88          
BLAST of Y box protein-1 vs. TrEMBL
Match: A0A3M7PA90 (Y-box factor-like protein OS=Brachionus plicatilis OX=10195 GN=BpHYR1_037785 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.064e-14
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 3
Query:   18 KFTNSIMAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVT 248
            K     +   +V G VKWFN KNGYGFIS+  D+ ++DIF+H   IA  N      S+ +GE+V FDIV+G KGLEA N+T
Sbjct:   26 KIVQKPLIDQKVTGTVKWFNVKNGYGFISL--DDREEDIFIHHSGIARNNPKKQQKSVGEGEKVEFDIVQGEKGLEAANLT 104          
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: ybx1 (Y-box binding protein 1 [Source:NCBI gene;Acc:103040011])

HSP 1 Score: 70.8626 bits (172), Expect = 6.236e-15
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            ++V+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   38 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 107          
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: YBX2 (Y-box-binding protein 2-A-like [Source:NCBI gene;Acc:103036193])

HSP 1 Score: 65.4698 bits (158), Expect = 5.340e-13
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 3
Query:   51 VVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVT 248
            V G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VE  KG EA NVT
Sbjct:   31 VQGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEIVEFDVVEATKGSEAANVT 98          
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: YBX2 (Y-box-binding protein 2-A-like [Source:NCBI gene;Acc:103036193])

HSP 1 Score: 65.4698 bits (158), Expect = 5.390e-13
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 3
Query:   30 SIMAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNA----TSLADGEEVLFDIVEGAKGLEARNVT 248
            SI+A + V G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VE  KG EA NVT
Sbjct:   18 SIVA-TLVQGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEIVEFDVVEATKGSEAANVT 91          
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: lin28b (protein lin-28 homolog B-like [Source:NCBI gene;Acc:103047343])

HSP 1 Score: 53.1434 bits (126), Expect = 6.314e-9
Identity = 26/69 (37.68%), Postives = 38/69 (55.07%), Query Frame = 3
Query:   57 GHVKWFNSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVT 248
            G+ KWFN + G+GFIS+ +   +      D+FVH   +      SL +GE+V F     +KGLE+  VT
Sbjct:   29 GYCKWFNVRMGFGFISMTHSEGNPVEPPLDVFVHQSKLVMEGFRSLREGEQVEFTFKRSSKGLESLRVT 97          
BLAST of Y box protein-1 vs. Ensembl Cavefish
Match: LIN28B (protein lin-28 homolog A [Source:NCBI gene;Acc:103022253])

HSP 1 Score: 52.7582 bits (125), Expect = 1.219e-8
Identity = 27/69 (39.13%), Postives = 37/69 (53.62%), Query Frame = 3
Query:   57 GHVKWFNSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVT 248
            GH KWFN + G+GFIS+ +   +      D+FVH   +      SL +GE V F   + +KGLE   VT
Sbjct:   39 GHCKWFNVRMGFGFISMTSRGGNPIDPPLDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSSKGLECVRVT 107          
BLAST of Y box protein-1 vs. Ensembl Nematostella
Match: EDO41469 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S475])

HSP 1 Score: 73.559 bits (179), Expect = 5.074e-18
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = 3
Query:   33 IMAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
             +A ++V G VKWFN KNGYGFI  + D++ +DIFVH  +IA  N      S+ DGE V F++V G KGLEA NVT
Sbjct:    2 FIAATKVTGTVKWFNVKNGYGFI--NRDDNKEDIFVHQTAIAKNNPKKYLRSVGDGEVVEFNVVSGTKGLEASNVT 75          
BLAST of Y box protein-1 vs. Ensembl Nematostella
Match: EDO44703 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RV03])

HSP 1 Score: 47.3654 bits (111), Expect = 4.630e-7
Identity = 28/64 (43.75%), Postives = 35/64 (54.69%), Query Frame = 3
Query:   57 GHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVT 248
            G VKWFN   G+GFI+   D+  +D+FVH  +I A    SL +GE V   I    KG  A  VT
Sbjct:  485 GSVKWFNLIKGFGFIT--RDDGGEDVFVHQSAIKASGYRSLEEGEHVQLTISNSDKGKVAICVT 546          
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: ybx1 (Y-box binding protein 1 [Source:NCBI gene;Acc:100049221])

HSP 1 Score: 70.4774 bits (171), Expect = 6.763e-15
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   45 SQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            ++V+G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD+VEG KG EA NVT
Sbjct:   39 TKVLGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 108          
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: ENSORLT00000007880.2 (Y-box binding protein 2 [Source:NCBI gene;Acc:100049372])

HSP 1 Score: 68.1662 bits (165), Expect = 8.059e-14
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 3
Query:   51 VVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            V G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD++E AKG EA NVT
Sbjct:  112 VQGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVT 179          
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: ENSORLT00000007875.2 (Y-box binding protein 2 [Source:NCBI gene;Acc:100049372])

HSP 1 Score: 67.781 bits (164), Expect = 1.039e-13
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 3
Query:   51 VVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNAT----SLADGEEVLFDIVEGAKGLEARNVT 248
            V G VKWFN +NGYGFI  + +++ +D+FVH  +I   N      S+ DGE V FD++E AKG EA NVT
Sbjct:  112 VQGTVKWFNVRNGYGFI--NRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVT 179          
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:101160951])

HSP 1 Score: 53.5286 bits (127), Expect = 5.622e-9
Identity = 27/69 (39.13%), Postives = 37/69 (53.62%), Query Frame = 3
Query:   57 GHVKWFNSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVT 248
            G  KWFN + G+GFIS+ N          D+FVH   +      SL +GE+V F   + +KGLE+  VT
Sbjct:   35 GFCKWFNVRMGFGFISMTNSEGSPVEPPLDVFVHQSKLVMEGFRSLKEGEQVEFTYKKSSKGLESLRVT 103          
BLAST of Y box protein-1 vs. Ensembl Medaka
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:101160951])

HSP 1 Score: 53.5286 bits (127), Expect = 5.723e-9
Identity = 27/69 (39.13%), Postives = 37/69 (53.62%), Query Frame = 3
Query:   57 GHVKWFNSKNGYGFISVDNDNSDK-----DIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVT 248
            G  KWFN + G+GFIS+ N          D+FVH   +      SL +GE+V F   + +KGLE+  VT
Sbjct:   42 GFCKWFNVRMGFGFISMTNSEGSPVEPPLDVFVHQSKLVMEGFRSLKEGEQVEFTYKKSSKGLESLRVT 110          
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058013.1 (SMESG000058013.1)

HSP 1 Score: 159.844 bits (403), Expect = 2.286e-51
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = 3
Query:   36 MAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTXXXXXXXXXXAQHDHSNNRGGDRD 320
            MAQSQV+GHVKWFNSKNGYGFISVDN+ +DKD+FVHFKSIAA NATSLADGEEVLFDIVEGAKGLEARNVTGPDGGDVVGGAQHDHSNNRGGDRD
Sbjct:    1 MAQSQVIGHVKWFNSKNGYGFISVDNERNDKDVFVHFKSIAATNATSLADGEEVLFDIVEGAKGLEARNVTGPDGGDVVGGAQHDHSNNRGGDRD 95          
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058043.1 (SMESG000058043.1)

HSP 1 Score: 153.68 bits (387), Expect = 8.637e-49
Identity = 90/99 (90.91%), Postives = 92/99 (92.93%), Query Frame = 3
Query:   36 MAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTXXXXXXXXXXAQH----DHSNNRGGDRD 320
            MAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGP+GGDVVGGA +    D  NNRGGDRD
Sbjct:    1 MAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAPYEQNNDRFNNRGGDRD 99          
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058039.1 (SMESG000058039.1)

HSP 1 Score: 145.976 bits (367), Expect = 9.195e-46
Identity = 85/99 (85.86%), Postives = 89/99 (89.90%), Query Frame = 3
Query:   36 MAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTXXXXXXXXXXAQH----DHSNNRGGDRD 320
            MAQSQV GHVKWFNSKNGYGFISVDN+  DKD+FVHFKSIAA NATSLADGEEVLFDIVEGAKGLEARNVTGP+GGDVVGGAQ+    D  NNRGGDRD
Sbjct:    1 MAQSQVTGHVKWFNSKNGYGFISVDNERCDKDVFVHFKSIAATNATSLADGEEVLFDIVEGAKGLEARNVTGPNGGDVVGGAQYEQNNDRFNNRGGDRD 99          
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000058066.1 (SMESG000058066.1)

HSP 1 Score: 125.176 bits (313), Expect = 5.051e-37
Identity = 76/98 (77.55%), Postives = 83/98 (84.69%), Query Frame = 3
Query:   36 MAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVTXXXXXXXXXXAQH---DHSNNRGGDRD 320
            M  SQV GHVKWF+SKNGYGFISVD+DN+ KDIFVH  SI A NATSLADGEEVLFDIV+GAKGLEARNVTGP+GGDV+GG  +   D SNNR GDRD
Sbjct:    1 MTASQVTGHVKWFSSKNGYGFISVDDDNNSKDIFVHHSSITANNATSLADGEEVLFDIVQGAKGLEARNVTGPNGGDVIGGKPYEPSDRSNNR-GDRD 97          
BLAST of Y box protein-1 vs. Planmine SMEST
Match: SMESG000073546.1 (SMESG000073546.1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.418e-26
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 3
Query:   21 FTNSIMAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLADGEEVLFDIVEGAKGLEARNVT 248
             T+  + +S+V GHVKWFN+K+GYGFI  D D +D  +FVH  SI A N+ SLADGEEVLFD++EG KGLEARNV 
Sbjct:    1 MTDYDIKESKVTGHVKWFNTKSGYGFIKKDVDGAD--VFVHHSSITATNSNSLADGEEVLFDVIEGPKGLEARNVC 74          
The following BLAST results are available for this feature:
BLAST of Y box protein-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
YBX21.614e-1552.11Y-box binding protein 2 [Source:HGNC Symbol;Acc:HG... [more]
YBX21.614e-1552.11Y-box binding protein 2 [Source:HGNC Symbol;Acc:HG... [more]
YBX17.149e-1550.00Y-box binding protein 1 [Source:HGNC Symbol;Acc:HG... [more]
YBX31.334e-1450.00Y-box binding protein 3 [Source:HGNC Symbol;Acc:HG... [more]
YBX31.603e-1450.00Y-box binding protein 3 [Source:HGNC Symbol;Acc:HG... [more]
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BLAST of Y box protein-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
cey-19.134e-1756.94C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:O62... [more]
cey-41.281e-1144.00C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5E... [more]
cey-41.281e-1144.00C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5E... [more]
cey-21.367e-1150.00C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91... [more]
cey-34.085e-1142.86C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91... [more]
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BLAST of Y box protein-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
yps2.549e-1348.10gene:FBgn0022959 transcript:FBtr0076027[more]
yps2.696e-1348.10gene:FBgn0022959 transcript:FBtr0305992[more]
lin-282.395e-738.46gene:FBgn0035626 transcript:FBtr0077090[more]
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BLAST of Y box protein-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ybx12.525e-1550.00Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-... [more]
ybx12.525e-1550.00Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-... [more]
ybx13.981e-1550.00Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-... [more]
lin28b6.057e-937.68lin-28 homolog B (C. elegans) [Source:ZFIN;Acc:ZDB... [more]
LIN28A1.370e-737.14si:ch1073-284b18.2 [Source:ZFIN;Acc:ZDB-GENE-11091... [more]
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BLAST of Y box protein-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
hmgcs15.273e-1550.003-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:... [more]
hmgcs18.612e-1550.003-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:... [more]
ybx31.949e-1348.61Y-box binding protein 3 [Source:NCBI gene;Acc:5485... [more]
lin28b3.138e-837.68lin-28 homolog B [Source:NCBI gene;Acc:100216028][more]
lin28b3.159e-837.68lin-28 homolog B [Source:NCBI gene;Acc:100216028][more]
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BLAST of Y box protein-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Ybx21.233e-1552.11Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372... [more]
Ybx21.347e-1552.11Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372... [more]
Ybx14.255e-1550.00Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146][more]
Ybx35.174e-1550.00Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670... [more]
Ybx35.932e-1550.00Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670... [more]
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BLAST of Y box protein-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P45441|YBX2B_XENLA2.972e-1550.00Y-box-binding protein 2-B OS=Xenopus laevis OX=835... [more]
sp|P41824|YBOXH_APLCA4.944e-1554.17Y-box factor homolog OS=Aplysia californica OX=650... [more]
sp|Q9Y2T7|YBOX2_HUMAN7.752e-1552.11Y-box-binding protein 2 OS=Homo sapiens OX=9606 GN... [more]
sp|P21574|YBX2A_XENLA1.092e-1451.39Y-box-binding protein 2-A OS=Xenopus laevis OX=835... [more]
sp|Q9KN00|CSPA_VIBCH1.712e-1447.89Cold shock-like protein CspA OS=Vibrio cholerae se... [more]
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BLAST of Y box protein-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
I1ZIB04.567e-3477.78Y box protein-1 (Fragment) OS=Schmidtea mediterran... [more]
A0A3N5Z4653.870e-1552.24Cold-shock protein OS=Alteromonas sp. U0105 OX=225... [more]
A0A3D8M3N36.795e-1550.00Cold-shock protein OS=Alteromonas aestuariivivens ... [more]
G0MVG49.478e-1555.70CBN-CEY-1 protein OS=Caenorhabditis brenneri OX=13... [more]
A0A3M7PA901.064e-1449.38Y-box factor-like protein OS=Brachionus plicatilis... [more]
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BLAST of Y box protein-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ybx16.236e-1550.00Y-box binding protein 1 [Source:NCBI gene;Acc:1030... [more]
YBX25.340e-1350.00Y-box-binding protein 2-A-like [Source:NCBI gene;A... [more]
YBX25.390e-1349.35Y-box-binding protein 2-A-like [Source:NCBI gene;A... [more]
lin28b6.314e-937.68protein lin-28 homolog B-like [Source:NCBI gene;Ac... [more]
LIN28B1.219e-839.13protein lin-28 homolog A [Source:NCBI gene;Acc:103... [more]
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BLAST of Y box protein-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Y box protein-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Y box protein-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO414695.074e-1852.63Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO447034.630e-743.75Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Y box protein-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ybx16.763e-1550.00Y-box binding protein 1 [Source:NCBI gene;Acc:1000... [more]
ENSORLT00000007880.28.059e-1450.00Y-box binding protein 2 [Source:NCBI gene;Acc:1000... [more]
ENSORLT00000007875.21.039e-1350.00Y-box binding protein 2 [Source:NCBI gene;Acc:1000... [more]
lin28b5.622e-939.13lin-28 homolog B [Source:NCBI gene;Acc:101160951][more]
lin28b5.723e-939.13lin-28 homolog B [Source:NCBI gene;Acc:101160951][more]
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BLAST of Y box protein-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000058013.12.286e-5193.68SMESG000058013.1[more]
SMESG000058043.18.637e-4990.91SMESG000058043.1[more]
SMESG000058039.19.195e-4685.86SMESG000058039.1[more]
SMESG000058066.15.051e-3777.55SMESG000058066.1[more]
SMESG000073546.12.418e-2661.84SMESG000073546.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30001546 ID=SMED30001546|Name=Y box protein-1|organism=Schmidtea mediterranea sexual|type=transcript|length=453bp
AATAGAGAATTATATAAAAATTTACAAATTCAATCATGGCTCAATCTCAA
GTTGTTGGACACGTTAAATGGTTTAACTCAAAGAATGGATACGGATTCAT
CAGTGTTGATAATGATAATAGTGATAAAGATATATTCGTGCATTTTAAGT
CAATTGCTGCTGGTAATGCAACTTCATTAGCTGACGGTGAAGAAGTTCTC
TTCGATATTGTCGAAGGTGCAAAGGGTCTTGAAGCAAGAAATGTTACTGG
TCCAGATGGAGGCGATGTTGTTGGCGGTGCGCAACATGATCATAGCAACA
ATAGAGGAGGTGATAGAGATAATAGCAGATCTTATGGTAATCGAGATGGG
GGTAATCGAAGGGATCAAGGAGGATATGGCAATAGGCGAGACGACAGATA
TTGATAATATCTAATATGTTAATAATTGGAATAAATTTTTTGTATAAAAA
AAA
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protein sequence of SMED30001546-orf-1

>SMED30001546-orf-1 ID=SMED30001546-orf-1|Name=SMED30001546-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=123bp
MAQSQVVGHVKWFNSKNGYGFISVDNDNSDKDIFVHFKSIAAGNATSLAD
GEEVLFDIVEGAKGLEARNVTGPDGGDVVGGAQHDHSNNRGGDRDNSRSY
GNRDGGNRRDQGGYGNRRDDRY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000028Category 2 cell
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002111X2 cell
PLANA:0002142parenchyma
Vocabulary: INTERPRO
TermDefinition
IPR002059CSP_DNA-bd
IPR011129CSD
IPR012340NA-bd_OB-fold
Vocabulary: biological process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
GO:0003676nucleic acid binding