SMED30001511
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30001511 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Alignments
SMED30001511 aligns in the following genomic locations:
Homology
BLAST of SMED30001511 vs. Ensembl Human
Match: TCTEX1D1 (Tctex1 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26882]) HSP 1 Score: 52.373 bits (124), Expect = 9.873e-8 Identity = 25/93 (26.88%), Postives = 50/93 (53.76%), Query Frame = 2 Query: 485 LKDV--------DYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 LKDV +Y+P +CR+ +++S I + ++ P+Y+ ++I+H G++ N + I SRC+W +D +LF + ++A+ Sbjct: 85 LKDVVTSYLQVEEYEPELCRQMTKTISEVIKAQVKDLMIPRYKLIVIVHIGQL-NRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAV 176
BLAST of SMED30001511 vs. Ensembl Mouse
Match: Tctex1d1 (Tctex1 domain containing 1 [Source:MGI Symbol;Acc:MGI:1914594]) HSP 1 Score: 53.5286 bits (127), Expect = 8.644e-9 Identity = 25/94 (26.60%), Postives = 51/94 (54.26%), Query Frame = 2 Query: 461 LLEKKLKS-LKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 +LE L + L++ YDP CR+ +++S I T + E+ P+Y+ ++I++ G+ + + I SRC+W+ +D F + ++A+ Sbjct: 21 ILEDVLTTYLQEAQYDPEFCRQMTKTISEVIKTQVKELVIPRYKLIVIVYIGQ-RDDQSIVIGSRCLWNPKSDTVSSYTFKNSTFFALANVYAV 113
BLAST of SMED30001511 vs. Ensembl Mouse
Match: Tctex1d1 (Tctex1 domain containing 1 [Source:MGI Symbol;Acc:MGI:1914594]) HSP 1 Score: 53.5286 bits (127), Expect = 8.644e-9 Identity = 25/94 (26.60%), Postives = 51/94 (54.26%), Query Frame = 2 Query: 461 LLEKKLKS-LKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 +LE L + L++ YDP CR+ +++S I T + E+ P+Y+ ++I++ G+ + + I SRC+W+ +D F + ++A+ Sbjct: 21 ILEDVLTTYLQEAQYDPEFCRQMTKTISEVIKTQVKELVIPRYKLIVIVYIGQ-RDDQSIVIGSRCLWNPKSDTVSSYTFKNSTFFALANVYAV 113
BLAST of SMED30001511 vs. Ensembl Mouse
Match: Tctex1d1 (Tctex1 domain containing 1 [Source:MGI Symbol;Acc:MGI:1914594]) HSP 1 Score: 53.9138 bits (128), Expect = 2.101e-8 Identity = 25/94 (26.60%), Postives = 51/94 (54.26%), Query Frame = 2 Query: 461 LLEKKLKS-LKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 +LE L + L++ YDP CR+ +++S I T + E+ P+Y+ ++I++ G+ + + I SRC+W+ +D F + ++A+ Sbjct: 78 ILEDVLTTYLQEAQYDPEFCRQMTKTISEVIKTQVKELVIPRYKLIVIVYIGQ-RDDQSIVIGSRCLWNPKSDTVSSYTFKNSTFFALANVYAV 170
BLAST of SMED30001511 vs. Ensembl Mouse
Match: Tctex1d1 (Tctex1 domain containing 1 [Source:MGI Symbol;Acc:MGI:1914594]) HSP 1 Score: 53.9138 bits (128), Expect = 2.101e-8 Identity = 25/94 (26.60%), Postives = 51/94 (54.26%), Query Frame = 2 Query: 461 LLEKKLKS-LKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 +LE L + L++ YDP CR+ +++S I T + E+ P+Y+ ++I++ G+ + + I SRC+W+ +D F + ++A+ Sbjct: 78 ILEDVLTTYLQEAQYDPEFCRQMTKTISEVIKTQVKELVIPRYKLIVIVYIGQ-RDDQSIVIGSRCLWNPKSDTVSSYTFKNSTFFALANVYAV 170
BLAST of SMED30001511 vs. Ensembl Mouse
Match: Tctex1d1 (Tctex1 domain containing 1 [Source:MGI Symbol;Acc:MGI:1914594]) HSP 1 Score: 53.9138 bits (128), Expect = 2.101e-8 Identity = 25/94 (26.60%), Postives = 51/94 (54.26%), Query Frame = 2 Query: 461 LLEKKLKS-LKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 +LE L + L++ YDP CR+ +++S I T + E+ P+Y+ ++I++ G+ + + I SRC+W+ +D F + ++A+ Sbjct: 78 ILEDVLTTYLQEAQYDPEFCRQMTKTISEVIKTQVKELVIPRYKLIVIVYIGQ-RDDQSIVIGSRCLWNPKSDTVSSYTFKNSTFFALANVYAV 170
BLAST of SMED30001511 vs. UniProt/SwissProt
Match: sp|Q9D5I4|TC1D1_MOUSE (Tctex1 domain-containing protein 1 OS=Mus musculus OX=10090 GN=Tctex1d1 PE=2 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 1.470e-7 Identity = 25/94 (26.60%), Postives = 51/94 (54.26%), Query Frame = 2 Query: 461 LLEKKLKS-LKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 +LE L + L++ YDP CR+ +++S I T + E+ P+Y+ ++I++ G+ + + I SRC+W+ +D F + ++A+ Sbjct: 78 ILEDVLTTYLQEAQYDPEFCRQMTKTISEVIKTQVKELVIPRYKLIVIVYIGQ-RDDQSIVIGSRCLWNPKSDTVSSYTFKNSTFFALANVYAV 170
BLAST of SMED30001511 vs. UniProt/SwissProt
Match: sp|Q8N7M0|TC1D1_HUMAN (Tctex1 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=TCTEX1D1 PE=1 SV=2) HSP 1 Score: 52.373 bits (124), Expect = 4.741e-7 Identity = 25/93 (26.88%), Postives = 50/93 (53.76%), Query Frame = 2 Query: 485 LKDV--------DYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 LKDV +Y+P +CR+ +++S I + ++ P+Y+ ++I+H G++ N + I SRC+W +D +LF + ++A+ Sbjct: 85 LKDVVTSYLQVEEYEPELCRQMTKTISEVIKAQVKDLMIPRYKLIVIVHIGQL-NRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAV 176
BLAST of SMED30001511 vs. TrEMBL
Match: A0A2G8KR34 (Putative tctex1 domain-containing protein 1-like OS=Stichopus japonicus OX=307972 GN=BSL78_12686 PE=4 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.149e-11 Identity = 39/123 (31.71%), Postives = 64/123 (52.03%), Query Frame = 2 Query: 377 FYVRPIKKVK-LQVQXXXXXXXXXXXXVRLLEKKLKS-LKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 + + PIKK++ +VQ RL E +L+ L D+ YDP+ CR + ++S I + E+N P+Y+ V+++ G + SRC+W+ TD SL VH LF +V I+ + Sbjct: 45 YQIEPIKKLRHSEVQ-------------RLAETELERFLADLRYDPITCRELTREIASAILEKIKEMNVPRYKYVVMVSLGSEKGNPGVQLGSRCLWNDSTDSSLTVHFHNKYLFAVVIIYGL 154
BLAST of SMED30001511 vs. TrEMBL
Match: C3YDU2 (Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_239782 PE=4 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 3.508e-7 Identity = 27/85 (31.76%), Postives = 42/85 (49.41%), Query Frame = 2 Query: 485 LKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 LKD YD CR AQ L+ +I +N +Y+ V I+ G + + F SRC+W+ TD V + +LF + I+ + Sbjct: 32 LKDQPYDAATCRTQAQDLAGKIMDATKNLNIKRYKLVTIVSIGSLKERPGMHFGSRCLWNDKTDSFTTVKYTNGSLFAVAMIYGL 116
BLAST of SMED30001511 vs. TrEMBL
Match: A0A1S3JDJ0 (tctex1 domain-containing protein 1-B OS=Lingula unguis OX=7574 GN=LOC106172364 PE=4 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 4.827e-7 Identity = 26/85 (30.59%), Postives = 45/85 (52.94%), Query Frame = 2 Query: 485 LKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 LKD+ YDP C+ +Q L+ I + F +Y+ V+++ G + + F SRC+W+K TD V + +LF + I+ + Sbjct: 100 LKDMKYDPATCKHLSQELAGIIMERVKLFAFKRYKFVVVVSIGSLKERPGMQFGSRCLWNKGTDSFANVKFANGSLFAVAMIYGL 184
BLAST of SMED30001511 vs. TrEMBL
Match: W4Y623 (Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 6.137e-7 Identity = 22/80 (27.50%), Postives = 43/80 (53.75%), Query Frame = 2 Query: 500 YDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 YDP CR ++ ++ + L + +P+Y+ V++++ G + SRC+W+ TD VH S +LF +V ++ + Sbjct: 69 YDPKQCRLLSRDIAGAVMEELKTMMYPRYKFVVVVNIGSKKEKPGVQLGSRCIWNDSTDSMTTVHYSNGSLFAVVMVYGL 148
BLAST of SMED30001511 vs. TrEMBL
Match: K1RFR2 (Tctex1 domain-containing protein 1 OS=Crassostrea gigas OX=29159 GN=CGI_10027869 PE=4 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 1.140e-6 Identity = 25/85 (29.41%), Postives = 48/85 (56.47%), Query Frame = 2 Query: 485 LKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 L V+YDPV CR +Q+++ +I + ++ F +Y+ + + G + + F SRC+W+K TD + V S ++F + I+ + Sbjct: 151 LSKVEYDPVTCRDVSQTVAIDILERVKQMGFKRYKIITNVSIGSLREKPGMQFGSRCLWNKNTDNFVSVKYSNTSIFAVAMIYGL 235
BLAST of SMED30001511 vs. Ensembl Cavefish
Match: tctex1d1 (Tctex1 domain containing 1 [Source:NCBI gene;Acc:103044040]) HSP 1 Score: 46.595 bits (109), Expect = 4.953e-6 Identity = 22/87 (25.29%), Postives = 50/87 (57.47%), Query Frame = 2 Query: 485 LKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDN--LFGIVQIFAI 739 L +V Y+ +CR+ +++S + + ++ P+Y+ +++I G++ +++ SRC+W +D + C + S N LF I ++A+ Sbjct: 91 LLEVKYEAELCRQMTKTISEVVKARVKDMMIPRYKIIVVISIGQLTG-QNMHVGSRCLWDATSD-TFCSN-SFKNSSLFAIANVYAV 174
BLAST of SMED30001511 vs. Ensembl Nematostella
Match: EDO45441 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RTB6]) HSP 1 Score: 53.5286 bits (127), Expect = 8.471e-9 Identity = 21/88 (23.86%), Postives = 48/88 (54.55%), Query Frame = 2 Query: 476 LKSLKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 +++L DV+YDP CR+ +++S + + E++ +Y+ + ++H G++ + + SRC+W D +LFG+ ++ + Sbjct: 88 IENLADVNYDPNTCRQLTKTISETLKNRVKELSVQRYKIICLVHIGQLGK-QAMRIGSRCLWDANFDTYTTYEFKNGSLFGVATVYGV 174
BLAST of SMED30001511 vs. Ensembl Nematostella
Match: EDO46990 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RNU7]) HSP 1 Score: 49.6766 bits (117), Expect = 6.606e-8 Identity = 25/87 (28.74%), Postives = 42/87 (48.28%), Query Frame = 2 Query: 479 KSLKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 K L + YDP CR A + EI + + + F +Y+ V + + G+V++ + I SRC W + D + LF + I+ I Sbjct: 27 KVLAESVYDPKTCRTQAMEIGDEILSQVKALGFDRYKIVCLTNIGKVND-QTIRIGSRCCWDQNLDNYAEAVYTNSTLFAVTAIYGI 112
BLAST of SMED30001511 vs. Ensembl Nematostella
Match: EDO49885 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RF13]) HSP 1 Score: 47.7506 bits (112), Expect = 1.957e-7 Identity = 25/95 (26.32%), Postives = 51/95 (53.68%), Query Frame = 2 Query: 455 VRLLEKKLKSLKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 +++LE++L++ K Y+ C+ + +S +I + + + +Y+ + + G VH + + SSRC+W +TD S + +LF + IF I Sbjct: 12 LKILERELRAAK---YEARKCKVLSMDISEKIRDEVKRLAYDRYKIIAFVTIGSVHG-QGLLVSSRCLWFPLTDGSATAVFTNASLFAVATIFGI 102
BLAST of SMED30001511 vs. Ensembl Nematostella
Match: EDO46089 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RR15]) HSP 1 Score: 45.4394 bits (106), Expect = 2.083e-6 Identity = 21/85 (24.71%), Postives = 44/85 (51.76%), Query Frame = 2 Query: 485 LKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 L+ + Y+ C + A+ +S I + +++ +Y+ V+++ G + + + + SSRC+W TD S +LF + +F I Sbjct: 39 LEGMSYEATECSKLAREMSETIRNEVKALSWDRYKIVVMVSIGSLKD-QGLHISSRCLWYPNTDGSATAVYRNTSLFAVATVFGI 122
BLAST of SMED30001511 vs. Ensembl Nematostella
Match: EDO46891 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RNP6]) HSP 1 Score: 45.0542 bits (105), Expect = 3.196e-6 Identity = 21/85 (24.71%), Postives = 44/85 (51.76%), Query Frame = 2 Query: 485 LKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAI 739 L V Y R + L+ EI +H+ + + +Y+ + ++H G + + +D+ +SRC+W + DR+ ++LF +F + Sbjct: 45 LGQVKYSAERSRVLSVPLAEEIKSHVKRLGYQRYKIICVVHIGSL-DGQDVRVASRCLWDENQDRAASGSFCNESLFASATVFGV 128
BLAST of SMED30001511 vs. Planmine SMEST
Match: SMESG000029772.1 (SMESG000029772.1) HSP 1 Score: 327.405 bits (838), Expect = 5.809e-114 Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 2 Query: 95 MASYNPRKNSNTLRYNKQSIPNGYSRKSSMDPKQSYFNKSSLNKAFSSLLNINRPSNYEMNXXXXXXXXXXXXXXXXXXXXXXXXXXXGKSTNMFYVRPIKKVKLQVQXXXXXXXXXXXXVRLLEKKLKSLKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAIL 742 MASYNPRKNSNTLRYNKQSI NGYSRKSSMDPKQSYFNKSSLNKAFSSLLNINRPSNYEMNSAKSIADISCDSSSTSSSVKIVQSITSGKSTNMFYVRPIKKVKLQVQEIFDIEAAEIIAVRLLEKKLKSLKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAIL Sbjct: 1 MASYNPRKNSNTLRYNKQSISNGYSRKSSMDPKQSYFNKSSLNKAFSSLLNINRPSNYEMNSAKSIADISCDSSSTSSSVKIVQSITSGKSTNMFYVRPIKKVKLQVQEIFDIEAAEIIAVRLLEKKLKSLKDVDYDPVVCRRYAQSLSSEIATHLDEINFPKYRRVIIIHFGRVHNLKDIFFSSRCVWSKITDRSLCVHKSLDNLFGIVQIFAIL 216 The following BLAST results are available for this feature:
BLAST of SMED30001511 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of SMED30001511 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30001511 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30001511 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30001511 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30001511 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of SMED30001511 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 2
BLAST of SMED30001511 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30001511 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of SMED30001511 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30001511 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30001511 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of SMED30001511 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30001511 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30001511 ID=SMED30001511|Name=SMED30001511|organism=Schmidtea mediterranea sexual|type=transcript|length=832bpback to top protein sequence of SMED30001511-orf-1 >SMED30001511-orf-1 ID=SMED30001511-orf-1|Name=SMED30001511-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=217bp MASYNPRKNSNTLRYNKQSIPNGYSRKSSMDPKQSYFNKSSLNKAFSSLLback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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