SMED30001457

Overview
NameSMED30001457
Smed IDSMED30001457
Length (bp)1038
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30001457 (SMED30001457) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30001457 (SMED30001457) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30001457 (SMED30001457) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30001457 (SMED30001457) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30001457

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
gutSMED30001457h1SMcG0014422 dd_Smed_v4_11196_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30001457h1SMcG0014422 dd_Smed_v4_11196_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30001457h1SMcG0014422 dd_Smed_v6_11196_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
enteric muscle cellSMED30001457h1SMcG0014422 dd_Smed_v4_11196_0_1dd_Smed_v4PMID:30471994
Scimone et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30001457 vs. TrEMBL
Match: A0A1I8I0S4 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig024983g1 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.773e-20
Identity = 77/262 (29.39%), Postives = 130/262 (49.62%), Query Frame = 1
Query:  226 WEKTIF-----NISLFVSNKTKFIVLEYLLDDSNQINGIKV-----AHVNNSDQIWCLMNMRGGLWEICDELSERSRSNS----FCNQYDKIKDNKRCFNYL--YRS-RDFSSETYAYENKN-LYFLKMQNNVIACAIMVLICXXXXXXXXXXXXIWQLVLCGMVASVLFAMSALFSVFASAIQNEKV----KLLQVDE--QCHNYTPLNIPSEICPYYTSKSFSATTEWPFTLSLISSILFAGSTLLWVMITRNLRLVKAK 939
            WE   F     N +L  +  T++     L  +S Q  G+ +     +  N +   +CL+N+   +W +CD ++  S +NS    +C+ Y  +  N  CF+Y+  Y S RD   +T   EN +    +KMQNN +AC I+VL+C   +       L+ ++V   MV SVL   + +F VF+++IQ+EKV    K  Q+D   QC  Y+ +  P   C    S   SA+  W    + +++  +  +   W+ +TR +R+ K+K
Sbjct:   58 WESVTFDFGQVNRTLAAAGSTQWQQPRPLFSESGQQTGLVLLPAGNSTANGTATGFCLLNVYASMWSLCDRVNSASGTNSDYSDYCSTYSMLIRNNTCFSYISGYSSIRDLLDKT---ENSSESQIMKMQNNAMACCIVVLLCVAASMVTGAIGLLARVVPSIMVTSVLNLTAGIFIVFSNSIQHEKVARMIKKPQIDACPQCACYSLIKTPEMFC---NSTHRSASLGWSVITAWVAAGAYLATAGCWLALTRRIRIEKSK 313          
BLAST of SMED30001457 vs. TrEMBL
Match: A0A1I8HCJ1 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.811e-20
Identity = 77/262 (29.39%), Postives = 130/262 (49.62%), Query Frame = 1
Query:  226 WEKTIF-----NISLFVSNKTKFIVLEYLLDDSNQINGIKV-----AHVNNSDQIWCLMNMRGGLWEICDELSERSRSNS----FCNQYDKIKDNKRCFNYL--YRS-RDFSSETYAYENKN-LYFLKMQNNVIACAIMVLICXXXXXXXXXXXXIWQLVLCGMVASVLFAMSALFSVFASAIQNEKV----KLLQVDE--QCHNYTPLNIPSEICPYYTSKSFSATTEWPFTLSLISSILFAGSTLLWVMITRNLRLVKAK 939
            WE   F     N +L  +  T++     L  +S Q  G+ +     +  N +   +CL+N+   +W +CD ++  S +NS    +C+ Y  +  N  CF+Y+  Y S RD   +T   EN +    +KMQNN +AC I+VL+C   +       L+ ++V   MV SVL   + +F VF+++IQ+EKV    K  Q+D   QC  Y+ +  P   C    S   SA+  W    + +++  +  +   W+ +TR +R+ K+K
Sbjct:   58 WESVTFDFGQVNRTLAAAGSTQWQQPRPLFSESGQQTGLVLLPAGNSTANGTATGFCLLNVYASMWSLCDRVNSASATNSDYSDYCSTYSMLIRNNTCFSYISGYSSIRDLLDKT---ENSSESQIMKMQNNAMACCIVVLLCVAASMVTGAIGLLARVVPSIMVTSVLNLTAGIFIVFSNSIQHEKVARMIKKPQIDACPQCACYSLIKTPEMFC---NSSHRSASLGWSVITAWVAAGAYLATAGCWLALTRRIRIEKSK 313          
BLAST of SMED30001457 vs. TrEMBL
Match: A0A267GF00 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig024983g2 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.751e-20
Identity = 77/262 (29.39%), Postives = 130/262 (49.62%), Query Frame = 1
Query:  226 WEKTIF-----NISLFVSNKTKFIVLEYLLDDSNQINGIKV-----AHVNNSDQIWCLMNMRGGLWEICDELSERSRSNS----FCNQYDKIKDNKRCFNYL--YRS-RDFSSETYAYENKN-LYFLKMQNNVIACAIMVLICXXXXXXXXXXXXIWQLVLCGMVASVLFAMSALFSVFASAIQNEKV----KLLQVDE--QCHNYTPLNIPSEICPYYTSKSFSATTEWPFTLSLISSILFAGSTLLWVMITRNLRLVKAK 939
            WE   F     N +L  +  T++     L  +S Q  G+ +     +  N +   +CL+N+   +W +CD ++  S +NS    +C+ Y  +  N  CF+Y+  Y S RD   +T   EN +    +KMQNN +AC I+VL+C   +       L+ ++V   MV SVL   + +F VF+++IQ+EKV    K  Q+D   QC  Y+ +  P   C    S   SA+  W    + +++  +  +   W+ +TR +R+ K+K
Sbjct:   58 WESVTFDFGQVNRTLAAAGSTQWQQPRPLFSESGQQTGLVLLPAGNSTANGTATGFCLLNVYASMWSLCDRVNSASATNSDYSDYCSTYSMLIRNNTCFSYISGYSSIRDLLDKT---ENSSESQIMKMQNNAMACCIVVLLCVAASMVTGAIGLLARVVPSIMVTSVLNLTAGIFIVFSNSIQHEKVARMIKKPQIDACPQCVCYSLIKTPEMFC---NSTHRSASLGWSVITAWVAAGAYLATAGCWLALTRRIRIEKSK 313          
BLAST of SMED30001457 vs. TrEMBL
Match: A0A4S2LVP6 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_005965 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.080e-12
Identity = 55/199 (27.64%), Postives = 97/199 (48.74%), Query Frame = 1
Query:  352 DQIWCLMNMRGGLWEICDELSERSRSNSFCNQYDKIKDNKRCFNYLY-RSRDFSSETYAYENKNL---------YFLKMQNNVIACAIMVLICXXXXXXXXXXXXIWQLVLCGMVASVLFAMSALFSVFASAIQNEKVKLLQVD-EQCHNYTPLNIPSEICPYYTSKSFSATTEWPFTLSLISSILFAGSTLLWVMITR 915
            +  W +MN   G+W +   L +     SF   Y           Y Y ++   SS   +Y  +NL         Y+LKMQNN+I+C I+V +C + +  +   +++++ V   MV  VL   S +F +FA+ I + K   L+ D   CH  +  ++P E+   Y  +  S  + WP  +S I+S +F  +++ W++ T+
Sbjct:  223 ESAWIVMNYHAGIWSMQHTLPD-IYDTSFLPHY-----------YTYCKTPPISSSKLSYFAQNLSESGISCTQYYLKMQNNIISCVIVVYLCMVGSALIGTFAIVFRTVPASMVTGVLHVTSGVFVIFANCIHHTKFNRLEYDWGPCHPIS--HLPKEL---YHPEYISVHSHWPLIVSWIASPIFFIASVAWIIFTQ 404          
BLAST of SMED30001457 vs. TrEMBL
Match: A0A4Z2DXF0 (Uncharacterized protein (Fragment) OS=Schistosoma japonicum OX=6182 GN=EWB00_000737 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.430e-12
Identity = 54/200 (27.00%), Postives = 97/200 (48.50%), Query Frame = 1
Query:  358 IWCLMNMRGGLWEICDELSERSRSNSFCNQYDKIKDNK---RCFNYLYRSRDFSSETYAYENKNL---YFLKMQNNVIACAIMVLICXXXXXXXXXXXXIWQLVLCGMVASVLFAMSALFSVFASAIQNEKVKLLQVDEQCHNYTPLNIPSEICPYYTSKSFSATTEWPFTLSLISSILFAGSTLLWVMITRNLRLVKAK 939
            +W +MN++ G+W +C  L++  +        +   D+     C +YL  +          E KNL   + LKMQNN+I+C ++V +    +  +   S +++ V   MV  VL+  S +F +FA+ I + K+  L+  E    Y    IP  +   YT    S    WP  +S ISS +F  +++ W+++T+ +    +K
Sbjct:   30 LWLIMNIQAGIWTMCFRLADAYKPKILAYSSNLHPDSNIPLDCMSYLQANLS--------ETKNLCVQFLLKMQNNIISCVVVVYLSVAASVLIGAFSTLFRAVPAAMVTGVLYVTSGVFIIFANCIHHTKLNRLEY-EWGPCYPISQIPRTL---YTPDIISVHALWPVLVSWISSFVFFTASITWIILTQLMTFENSK 217          
BLAST of SMED30001457 vs. Planmine SMEST
Match: SMESG000022121.1 (SMESG000022121.1)

HSP 1 Score: 551.206 bits (1419), Expect = 0.000e+0
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 1
Query:  100 MSFNLEICFPTHSRNTLFLFIICWLLPILATVFYSVVIILPNWEKTIFNISLFVSNKTKFIVLEYLLDDSNQINGIKVAHVNNSDQIWCLMNMRGGLWEICDELSERSRSNSFCNQYDKIKDNKRCFNYLYRSRDFSSETYAYENKNLYFLKMQNNVIACAIMVLICXXXXXXXXXXXXIWQLVLCGMVASVLFAMSALFSVFASAIQNEKVKLLQVDEQCHNYTPLNIPSEICPYYTSKSFSATTEWPFTLSLISSILFAGSTLLWVMITRNLRLVKAKAYL 948
            MSFNLEICFPTHSRNTLFLFIICWLLPILATVFYSVVIILPNWEKTIFNISLFVSNKTKFIVLEYLLDDSNQINGIKVAHVNNSDQIWCLMNMRGGLWEICDELSERSRSNSFCNQYDKIKDNKRCFNYLYRSRDFSSETYAYENKNLYFLKMQNNVIACAIMVLICSLFAFGLALASLIWQLVLCGMVASVLFAMSALFSVFASAIQNEKVKLLQVDEQCHNYTPLNIPSEICPYYTSKSFSATTEWPFTLSLISSILFAGSTLLWVMITRNLRLVKAKAYL
Sbjct:    1 MSFNLEICFPTHSRNTLFLFIICWLLPILATVFYSVVIILPNWEKTIFNISLFVSNKTKFIVLEYLLDDSNQINGIKVAHVNNSDQIWCLMNMRGGLWEICDELSERSRSNSFCNQYDKIKDNKRCFNYLYRSRDFSSETYAYENKNLYFLKMQNNVIACAIMVLICSLFAFGLALASLIWQLVLCGMVASVLFAMSALFSVFASAIQNEKVKLLQVDEQCHNYTPLNIPSEICPYYTSKSFSATTEWPFTLSLISSILFAGSTLLWVMITRNLRLVKAKAYL 283          
BLAST of SMED30001457 vs. Planmine SMEST
Match: SMESG000022121.1 (SMESG000022121.1)

HSP 1 Score: 239.58 bits (610), Expect = 5.981e-82
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 1
Query:  553 KMQNNVIACAIMVLICXXXXXXXXXXXXIWQLVLCGMVASVLFAMSALFSVFASAIQNEKVKLLQVDEQCHNYTPLNIPSEICPYYTSKSFSATTEWPFTLSLISSILFAGSTLLWVMITRNLRLVKAKAYL 948
            +MQNNVIACAIMVLICSLFAFGLALASLIWQLVLCGMVASVLFAMSALFSVFASAIQNEKVKLLQVDEQCHNYTPLNIPSEICPYYTSKSFSATTEWPFTLSLISSILFAGSTLLWVMITRNLRLVKAKAYL
Sbjct:   39 QMQNNVIACAIMVLICSLFAFGLALASLIWQLVLCGMVASVLFAMSALFSVFASAIQNEKVKLLQVDEQCHNYTPLNIPSEICPYYTSKSFSATTEWPFTLSLISSILFAGSTLLWVMITRNLRLVKAKAYL 170          

HSP 2 Score: 84.3445 bits (207), Expect = 5.981e-82
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 2
Query:  404 MNCQKGQDQIRFAINMTKSRTTRDALIICTDQEISVQKRM 523
            MNCQKGQDQIRFAINMTKSRTTRDALIICTDQEISVQK+M
Sbjct:    1 MNCQKGQDQIRFAINMTKSRTTRDALIICTDQEISVQKQM 40          
The following BLAST results are available for this feature:
BLAST of SMED30001457 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001457 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001457 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001457 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001457 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001457 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001457 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001457 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1I8I0S43.773e-2029.39Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8HCJ13.811e-2029.39Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267GF007.751e-2029.39Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A4S2LVP61.080e-1227.64Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A4Z2DXF01.430e-1227.00Uncharacterized protein (Fragment) OS=Schistosoma ... [more]
back to top
BLAST of SMED30001457 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001457 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001457 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001457 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001457 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30001457 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000022121.10.000e+0100.00SMESG000022121.1[more]
SMESG000022121.15.981e-8299.24SMESG000022121.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30001457 ID=SMED30001457|Name=SMED30001457|organism=Schmidtea mediterranea sexual|type=transcript|length=1038bp
TTTTGTTATAATTTAGATGTGATATGAATCAATTTTTATGGCATAGATAT
CGATTACAGTTTTTGCAAGTGAAATTCATTAAATAAATATCGAAGAGTCA
TGAGTTTCAATTTGGAAATCTGTTTTCCTACTCATTCCCGAAATACTTTG
TTTTTATTTATTATCTGTTGGTTATTACCAATATTAGCTACTGTGTTCTA
TTCAGTGGTAATTATTCTTCCAAACTGGGAAAAAACCATTTTTAACATTT
CTCTATTTGTTTCAAATAAAACCAAGTTTATAGTTTTGGAATATTTATTG
GATGACTCAAATCAAATAAATGGTATTAAAGTAGCTCATGTCAACAATTC
TGATCAAATTTGGTGTTTAATGAATATGAGGGGAGGTTTATGGGAAATAT
GTGATGAATTGTCAGAAAGGTCAAGATCAAATTCGTTTTGCAATCAATAT
GACAAAATCAAGGACAACAAGAGATGCTTTAATTATTTGTACAGATCAAG
AGATTTCAGTTCAGAAACGTATGCTTATGAGAACAAAAATTTATACTTTT
TAAAAATGCAGAACAACGTCATTGCTTGCGCTATAATGGTATTGATATGC
AGTTTATTTGCTTTTGGATTAGCGCTTGCCAGCTTAATTTGGCAATTAGT
TCTATGTGGAATGGTAGCGTCAGTTCTGTTTGCCATGTCAGCATTATTTT
CTGTATTTGCAAGTGCAATCCAGAACGAAAAAGTGAAATTATTACAAGTT
GATGAACAATGTCACAATTATACACCTCTCAATATTCCTTCAGAGATTTG
TCCCTATTATACTTCAAAATCCTTTTCTGCTACCACGGAATGGCCATTTA
CATTGAGCTTGATATCGTCGATATTATTCGCCGGATCCACTCTTCTATGG
GTTATGATCACAAGAAATTTGAGATTGGTTAAAGCTAAAGCATACTTATA
ATTTAATTAATTGTCATGAATAAAATTCTACACTGAGAATTATGTAACAT
TTTTTTATTAAATATAAAGAATTTCATTTCTAAAAAAA
back to top

protein sequence of SMED30001457-orf-1

>SMED30001457-orf-1 ID=SMED30001457-orf-1|Name=SMED30001457-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=284bp
MSFNLEICFPTHSRNTLFLFIICWLLPILATVFYSVVIILPNWEKTIFNI
SLFVSNKTKFIVLEYLLDDSNQINGIKVAHVNNSDQIWCLMNMRGGLWEI
CDELSERSRSNSFCNQYDKIKDNKRCFNYLYRSRDFSSETYAYENKNLYF
LKMQNNVIACAIMVLICSLFAFGLALASLIWQLVLCGMVASVLFAMSALF
SVFASAIQNEKVKLLQVDEQCHNYTPLNIPSEICPYYTSKSFSATTEWPF
TLSLISSILFAGSTLLWVMITRNLRLVKAKAYL*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000418head
PLANA:0003104enteric muscle cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.20.140.150coord: 15..280
e-value: 1.2E-9
score: 39.8
NoneNo IPR availableTMHMMTMhelixcoord: 248..270
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 181..203
NoneNo IPR availableTMHMMTMhelixcoord: 155..177