Lipopolysaccharide choline

Overview
NameLipopolysaccharide choline
Smed IDSMED30001360
Length (bp)1261
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Lipopolysaccharide choline (SMED30001360) t-SNE clustered cells

Violin plots show distribution of expression levels for Lipopolysaccharide choline (SMED30001360) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Lipopolysaccharide choline (SMED30001360) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Lipopolysaccharide choline (SMED30001360) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30001360

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 17

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
gutSMED30001360h1SMcG0002769 Contig2381uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
gutSMED30001360h1SMcG0002769 Contig2381newmark_estsPMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
intestinal phagocyteSMED30001360h1SMcG0002769 Contig2381uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30001360h1SMcG0002769 Contig2381newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
gutSMED30001360h1SMcG0009313 Contig2381uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
gutSMED30001360h1SMcG0009313 Contig2381newmark_estsPMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
intestinal phagocyteSMED30001360h1SMcG0009313 Contig2381uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30001360h1SMcG0009313 Contig2381newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
Smed sexual biotypeSMED30001360h1SMcG0002769 Contig2381uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30001360h1SMcG0002769 Contig2381newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
protonephridiaSMED30001360h1SMcG0002769 dd_Smed_v4_6457_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30001360h1SMcG0002769 dd_Smed_v4_6457_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30001360h1SMcG0002769 dd_Smed_v4_6457_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30001360h1SMcG0002769 dd_Smed_v4_6457_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30001360h1SMcG0002769 dd_Smed_v4_6457_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30001360h1SMcG0009313 Contig2381uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30001360h1SMcG0009313 Contig2381newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Lipopolysaccharide choline vs. Ensembl Human
Match: FKTN (fukutin [Source:HGNC Symbol;Acc:HGNC:3622])

HSP 1 Score: 51.6026 bits (122), Expect = 1.628e-6
Identity = 47/168 (27.98%), Postives = 77/168 (45.83%), Query Frame = 2 
Query:  380 DLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDL-IVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKL-DGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKK-KHMFP---LILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWN 865
            +LL L    ++K  + F L  G+ +G  R    IP+  D+DL I    +KS++I A +           D     K KF K+ D  + S +      LD+FF  E  + M+    ++   KK K++FP   L    F ++++  PC T + +E  YG   K    +W+
Sbjct:  279 ELLQLAAKTLNKLGVPFWLSSGTCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQ-----------DAGLPLKHKFGKVEDSLELSFQGKDDVKLDVFFFYEETDHMWNGGTQAKTGKKFKYLFPKFTLCWTEFVDMKVHVPCETLEYIEANYGKTWKIPVKTWD 435
[Close]
BLAST of Lipopolysaccharide choline vs. Ensembl Human
Match: FKTN (fukutin [Source:HGNC Symbol;Acc:HGNC:3622])

HSP 1 Score: 51.6026 bits (122), Expect = 1.628e-6
Identity = 47/168 (27.98%), Postives = 77/168 (45.83%), Query Frame = 2 
Query:  380 DLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDL-IVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKL-DGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKK-KHMFP---LILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWN 865
            +LL L    ++K  + F L  G+ +G  R    IP+  D+DL I    +KS++I A +           D     K KF K+ D  + S +      LD+FF  E  + M+    ++   KK K++FP   L    F ++++  PC T + +E  YG   K    +W+
Sbjct:  279 ELLQLAAKTLNKLGVPFWLSSGTCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQ-----------DAGLPLKHKFGKVEDSLELSFQGKDDVKLDVFFFYEETDHMWNGGTQAKTGKKFKYLFPKFTLCWTEFVDMKVHVPCETLEYIEANYGKTWKIPVKTWD 435
[Close]
BLAST of Lipopolysaccharide choline vs. Ensembl Mouse
Match: Fktn (fukutin [Source:MGI Symbol;Acc:MGI:2179507])

HSP 1 Score: 50.8322 bits (120), Expect = 2.155e-6
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 2 
Query:  380 DLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDL-IVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKL-DGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKK-KHMFP---LILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWN 865
            +LL L    +    + F L  G+ +G  R  G IP+  D+DL I    +K ++I A +E                K KF K+ D  + S +      LDIFF  E  + ++    ++   KK K++FP   L    F ++++  PC T D +E  YG   K    +W+
Sbjct:  318 ELLQLAAKTLKDLGVPFWLSSGTCLGWYRQCGIIPYSKDVDLGIFIQDYKPDIILAFQEAGLPL-----------KHKFGKVEDSLELSFQGKNDVKLDIFFFYEEADHLWNGGTQARTGKKFKYLFPKFTLCWTEFVDIKVHVPCETVDYIEANYGKTWKIPIKTWD 474
[Close]
BLAST of Lipopolysaccharide choline vs. Ensembl Mouse
Match: Fktn (fukutin [Source:MGI Symbol;Acc:MGI:2179507])

HSP 1 Score: 50.447 bits (119), Expect = 2.554e-6
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 2 
Query:  380 DLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDL-IVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKL-DGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKK-KHMFP---LILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWN 865
            +LL L    +    + F L  G+ +G  R  G IP+  D+DL I    +K ++I A +E                K KF K+ D  + S +      LDIFF  E  + ++    ++   KK K++FP   L    F ++++  PC T D +E  YG   K    +W+
Sbjct:  279 ELLQLAAKTLKDLGVPFWLSSGTCLGWYRQCGIIPYSKDVDLGIFIQDYKPDIILAFQEAGLPL-----------KHKFGKVEDSLELSFQGKNDVKLDIFFFYEEADHLWNGGTQARTGKKFKYLFPKFTLCWTEFVDIKVHVPCETVDYIEANYGKTWKIPIKTWD 435
[Close]
BLAST of Lipopolysaccharide choline vs. Ensembl Mouse
Match: Fktn (fukutin [Source:MGI Symbol;Acc:MGI:2179507])

HSP 1 Score: 50.447 bits (119), Expect = 2.554e-6
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 2 
Query:  380 DLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDL-IVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKL-DGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKK-KHMFP---LILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWN 865
            +LL L    +    + F L  G+ +G  R  G IP+  D+DL I    +K ++I A +E                K KF K+ D  + S +      LDIFF  E  + ++    ++   KK K++FP   L    F ++++  PC T D +E  YG   K    +W+
Sbjct:  279 ELLQLAAKTLKDLGVPFWLSSGTCLGWYRQCGIIPYSKDVDLGIFIQDYKPDIILAFQEAGLPL-----------KHKFGKVEDSLELSFQGKNDVKLDIFFFYEEADHLWNGGTQARTGKKFKYLFPKFTLCWTEFVDIKVHVPCETVDYIEANYGKTWKIPIKTWD 435
[Close]
BLAST of Lipopolysaccharide choline vs. UniProt/SwissProt
Match: sp|P14184|LICD_HAEIN (Lipopolysaccharide cholinephosphotransferase LicD OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=licD PE=3 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 1.472e-9
Identity = 25/48 (52.08%), Postives = 38/48 (79.17%), Query Frame = 2 
Query:  362 QKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDL 505
            Q+   L++L  F +  +++ I++SL GG+LIGA+RH+GFIPWDDDID+
Sbjct:    9 QQLVCLNILDYFHALCERYKISYSLGGGTLIGAIRHKGFIPWDDDIDV 56
[Close]
BLAST of Lipopolysaccharide choline vs. UniProt/SwissProt
Match: sp|Q68W49|Y683_RICTY (Uncharacterized protein RT0683 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=RT0683 PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 4.236e-6
Identity = 55/205 (26.83%), Postives = 90/205 (43.90%), Query Frame = 2 
Query:  359 IQKSGMLDLLALFKSQ---MDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESY---FIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTE-YFVSSSNLKT---VSCDLLKPFYPF 943
            I +   L L  L K     + K NI + +  G+L+GAVRHQG IP+DDD+D+ +    + +    L +  Q    I ++       K Y + G++          LDIF   +  +    +  + Y   F  +  ++PL    F N+++  P      L   Y + +K       HS    F+S+   KT   ++ +LLKP  PF
Sbjct:   99 ISEKKALSLYQLMKDTHELLTKNNIKYWIESGTLLGAVRHQGIIPFDDDLDIGIMHEDEIHFQQILPQFKQLGYRIKHN-------KIYVICGERC---------LDIFIFHKEKDKFVHILYDQYPNDFFYENELYPLKKYKFGNIEVYGPFDPIGNLNRQYPEWDKYAIIYSPHSFHLLFLSNIEKKTKFILTPELLKPAQPF 287
[Close]
BLAST of Lipopolysaccharide choline vs. UniProt/SwissProt
Match: sp|Q60HG0|FKTN_MACFA (Fukutin OS=Macaca fascicularis OX=9541 GN=FKTN PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 5.265e-6
Identity = 56/211 (26.54%), Postives = 92/211 (43.60%), Query Frame = 2 
Query:  278 MKFIENRAVNRTIKNPYE---SYFHHTMTPIQKSGML------DLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDL-IVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKL-DGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKK-KHMFP---LILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWN 865
            M F+E    +R I+  Y+   ++F   +       M       +LL L    ++K  + F L  G+ +G  R    IP+  D+DL I    +KS++I A +           D     K KF K+ D  + S +      LDIFF  E  + M+    ++   KK K++FP   L    F ++++  PC T + +E  YG   K    +W+
Sbjct:  236 MHFVEEVPHSRFIECRYKEARAFFQQYLDDNTVEAMAFRKSAKELLQLAAKTLNKLGVPFWLSSGTCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQ-----------DAGLPLKHKFGKVEDSLELSFQGKDDVKLDIFFFYEETDHMWNGGTQAKTGKKFKYLFPKFTLCWTEFVDMKVHVPCETLEYIEANYGKTWKIPVKTWD 435
[Close]
BLAST of Lipopolysaccharide choline vs. UniProt/SwissProt
Match: sp|Q9ZCN4|Y689_RICPR (Uncharacterized protein RP689 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=RP689 PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 7.628e-6
Identity = 52/197 (26.40%), Postives = 90/197 (45.69%), Query Frame = 2 
Query:  407 MDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKE------FNETMFKVEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWN--------HSTEY-FVSSSNLKT---VSCDLLKPFYPF 943
            + K NI + +  G+L+GAVRHQG IP+DDD+D+ +    + ++   L +  Q    +SY+       + Y +  K           LDIF + +      +   M + +   +F     ++PL    F ++++  P  +D I     G+LN+   P W+        HS    F+S+   KT   ++ +LLKP  P 
Sbjct:   69 LTKNNIKYWIESGTLLGAVRHQGIIPFDDDLDIGIMHEDEIHLQQILPQFEQLGYTVSYE-------RAYNICKKTC---------LDIFIVHKEKNKFIYTNIMLRDKYPEHFFYDHELYPLKKYKFGSIEVYGP--SDPI-----GNLNR-QYPEWDKYAIIYSPHSLHLPFLSNIEKKTKFILTPELLKPAQPL 241
[Close]
BLAST of Lipopolysaccharide choline vs. UniProt/SwissProt
Match: sp|O75072|FKTN_HUMAN (Fukutin OS=Homo sapiens OX=9606 GN=FKTN PE=1 SV=2)

HSP 1 Score: 51.6026 bits (122), Expect = 7.820e-6
Identity = 47/168 (27.98%), Postives = 77/168 (45.83%), Query Frame = 2 
Query:  380 DLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDL-IVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKL-DGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKK-KHMFP---LILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWN 865
            +LL L    ++K  + F L  G+ +G  R    IP+  D+DL I    +KS++I A +           D     K KF K+ D  + S +      LD+FF  E  + M+    ++   KK K++FP   L    F ++++  PC T + +E  YG   K    +W+
Sbjct:  279 ELLQLAAKTLNKLGVPFWLSSGTCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQ-----------DAGLPLKHKFGKVEDSLELSFQGKDDVKLDVFFFYEETDHMWNGGTQAKTGKKFKYLFPKFTLCWTEFVDMKVHVPCETLEYIEANYGKTWKIPVKTWD 435
[Close]
BLAST of Lipopolysaccharide choline vs. TrEMBL
Match: A0A3S1B5A0 (Uncharacterized protein (Fragment) OS=Elysia chlorotica OX=188477 GN=EGW08_011999 PE=4 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.512e-32
Identity = 82/234 (35.04%), Postives = 118/234 (50.43%), Query Frame = 2 
Query:  338 FHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIE---SYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAE 1030
            F   +T  +K  +L +   F      FN+TF LYGG+L+G+ RH   IPWDDDID+ V +  K  +  AL  LN T  L+     +   WKFY    K   HKPFR+PY+DIFF ++    +F  +IE   S+  +K  +FPL +R F    +P PC TD +L   Y   N C+S  ++H TE   +      + C  L   YPF  ++     N   + E +K+G    H  +
Sbjct:    1 FRPIITVEEKKLLLLVFQKFVRACKDFNVTFFLYGGTLLGSFRHHDLIPWDDDIDVFVPAREKHILRRALSPLNYTGYLLYQPLDK--PWKFYWNKTKTLLHKPFRWPYVDIFFYEDNATHIFDQQIEYRASFAYRKVDVFPLTVRPFAGAFLPVPCNTDRVLRQNYSP-NLCSSQRFSHRTETLPAWGPHLIIPCKRLHDVYPFVHRQWSHTGNL--VTEEVKIGATTFHSVQ 229
[Close]
BLAST of Lipopolysaccharide choline vs. TrEMBL
Match: A0A1I8HH40 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig006809g1 PE=4 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.423e-32
Identity = 78/254 (30.71%), Postives = 130/254 (51.18%), Query Frame = 2 
Query:  329 ESYFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISY-DGKETGKWKFYKLDGKKFSHKP---FRYPYLDIFFLKEFNETMFK-VEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGD----LNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEY-YRPLRCLDK 1060
            E YF+  +T  Q   M  +L +F   M   ++TF L  G+L+G++RH G IPWDDD+D++V    +  M +AL++L   + L  + +    GKWKF++ D   F  +P   FR+PY+DIFF++  N +  +       + ++K +FPL LR ++ + +P PCA  D +   + D       C S  ++H  E  +     +++ C  L   +PF            R+ E LK+G K +   E+ +RP  C  +
Sbjct:   72 EDYFYSPVTEQQAMQMRSVLRVFADAMKNASVTFFLCSGTLLGSLRHHGRIPWDDDVDVMVLIEQRQQMEAALKQLEPEYRLYRFMEWAALGKWKFFRADSDAFLLQPWSKFRWPYVDIFFVQGHNASHLRHAYYGDIYFRRKDLFPLQLRPYEGMMLPVPCAPGDFMRAEFQDPGFNWTLCQSRGFSHVMEVPLPHWRQRSLLCSRLASRFPFVYTATSTAD---RVTEVLKVGEKVLR--EFSFRPPACTGR 320
[Close]
BLAST of Lipopolysaccharide choline vs. TrEMBL
Match: A0A0L8FFU7 (Uncharacterized protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22024326mg PE=4 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.335e-31
Identity = 79/218 (36.24%), Postives = 120/218 (55.05%), Query Frame = 2 
Query:  332 SYFHHTMTPI-QKSGMLDLLAL------FKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEI----ESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEK 952
            ++F H++    QK  + DL AL      F    DK N+T+ LY GSL+G+ RH G IPWDDD+D+++ SS K  +I  L++ + T+ L  +      +WKFY  +     HKPFR+PY+DIFF +E +E ++  EI     SY IKK  +FPL  R F+   + +PC  + +   ++ D+ KC + S+NH  E +        V C  L   +PF  +
Sbjct:  113 AHFRHSLAEYKQKMSLTDLKALNEMLQVFTKAADKANLTYFLYAGSLLGSYRHHGIIPWDDDVDIMMNSSQKGKIIETLKKFSPTYGLYIH---PRNQWKFYYANTNTLLHKPFRWPYIDIFFFQEDDEYIWD-EIPTFKSSYTIKKSSIFPLQRRPFNGFMLWSPC--NPVENLLFYDIEKCAASSYNHDIEEWKPVYTWAKVQCTQLMDTFPFVWR 324
[Close]
BLAST of Lipopolysaccharide choline vs. TrEMBL
Match: A0A0L8GPU7 (Uncharacterized protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22030157mg PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.224e-30
Identity = 83/242 (34.30%), Postives = 121/242 (50.00%), Query Frame = 2 
Query:  338 FHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKE----FNETMFKVEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRC 1051
            F   +T  +   +L L  +F    D  N+ + LYGGSL+G+ RH GFIPWDDDID+I+ SS K  +  AL      + L +   K+   WKFY+ D +    KPFR+PY+DIFF +E      +  F  +  +Y   KK +FPL  R FDNL +P PC T+  L     D+  C + +++H  E ++       + C  L+  +P     V + K      E L  G   I +  +Y P  C
Sbjct:   49 FQPRVTATEYRLLLTLTRIFAKAADTENLVYFLYGGSLLGSYRHHGFIPWDDDIDVIMNSSQKEEIRRALSAYEPKYKLYAPPHKQ---WKFYRADSEALKEKPFRWPYIDIFFFQEDATHIWDEFFWYQF-TYVYDKKRVFPLQKRPFDNLSLPAPCDTESFLGTYAADM--CRTNAFSHKEERWLYRQ--AQLPCYQLRDSFPL----VQRTKTDDGWTEVLWNG--SIAVQYFYSPHAC 276
[Close]
BLAST of Lipopolysaccharide choline vs. TrEMBL
Match: A0A1I8H982 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig018254g1 PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.557e-27
Identity = 79/254 (31.10%), Postives = 130/254 (51.18%), Query Frame = 2 
Query:  329 ESYFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISY-DGKETGKWKFYKLDGKKFSHKP---FRYPYLDIFFLKEFNETMFK-VEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGD----LNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEY-YRPLRCLDK 1060
            E YF+  +T  Q   M  +L +F   M   N+TF L  G+L+G++RH G IPWDDD+D++V    +  M +AL++L   + L  + +    GKWKF++ D   F  +P   FR+PY+DIFF++  N +  +       + ++K +FPL LR ++ + +P PCA  D +   + D       C S  ++H  E  +     +++ C  L   +PF            R+ E LK+G K +   E+ +RP  C  +
Sbjct:   72 EDYFYSPVTEQQAVQMRSVLRVFADAMKNANVTFFLCSGTLLGSLRHHGRIPWDDDVDVMVLVEQRQQMEAALKQLEPEYRLYRFMEWAALGKWKFFRADSDAFLLQPWSKFRWPYVDIFFVQGHNASHLRHAYYGDIYFRRKDLFPLQLRPYEGMMLPAPCAPGDFMRAEFQDPGFNWTLCQSRGFSHVMEVPLPHWRQRSLLCSRLASRFPFVYTATSTAD---RVTEVLKVGEKVLR--EFSFRPPACTGR 320
[Close]
BLAST of Lipopolysaccharide choline vs. Ensembl Nematostella
Match: EDO43590 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RY81])

HSP 1 Score: 51.9878 bits (123), Expect = 2.523e-7
Identity = 43/158 (27.22%), Postives = 71/158 (44.94%), Query Frame = 2 
Query:  407 MDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSN---MISALEELNQTHNLISYDG---KETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFK----------VEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYG 832
            +D   +++ L GGSL+GAVRH   IPWD D+D+ ++ S       +  ALE+       I   G   +++ + +F+++   + +H      ++DIF   E N  M K          +E   +F+K     PL    F  +    P    D LE  +G
Sbjct:  357 LDNSGVSYWLEGGSLLGAVRHSDIIPWDYDVDIGIYQSQIRKCKPLFYALEQSRSGSKFIDEKGFVWEKSREGEFFRVQFSQINHL-----HVDIFPFYEKNGKMTKDTWFKTHRQDMEFPVHFLK-----PLTKIKFVGVLASAPNHIKDFLELKFG 504
[Close]
BLAST of Lipopolysaccharide choline vs. Ensembl Nematostella
Match: EDO45781 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RRL8])

HSP 1 Score: 50.0618 bits (118), Expect = 3.617e-7
Identity = 34/109 (31.19%), Postives = 53/109 (48.62%), Query Frame = 2 
Query:  362 QKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGK--KFSHKPFRYPYLDIFFL 682
            Q +G LD L        +  I +   GG+ +G VRH+G IPWDDDIDL + S      + AL+ + +T      + K+   ++ Y +         K  R+P+ DIF +
Sbjct:   26 QMAGDLDQL------FTEHQINYWTDGGTTLGCVRHKGLIPWDDDIDLCI-SKNDEQKVLALKPVLETRGYDIVNYKKPFGYRIYPVANSLPLPPGKVGRFPFCDIFLM 127
[Close]
BLAST of Lipopolysaccharide choline vs. Ensembl Nematostella
Match: EDO29477 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T3I7])

HSP 1 Score: 49.2914 bits (116), Expect = 1.293e-6
Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 2 
Query:  374 MLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEEL 556
            +L +LAL     DK  + + L+ G+L+GAVRHQG  P+D+DID+ +       + +A EEL
Sbjct:   83 LLRVLALL---CDKHGVRYFLFHGTLLGAVRHQGHNPFDNDIDIAIPEEDFHKLQAAAEEL 140
[Close]
BLAST of Lipopolysaccharide choline vs. Ensembl Nematostella
Match: EDO35854 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SK93])

HSP 1 Score: 48.9062 bits (115), Expect = 1.403e-6
Identity = 26/72 (36.11%), Postives = 43/72 (59.72%), Query Frame = 2 
Query:  341 HHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEEL 556
            H  ++ +  + +L +LAL     DK  + + L+ G+L+GAVRHQG  P+D+DID+ +       + +A EEL
Sbjct:   72 HLRVSQLILTRLLRVLALL---CDKHGVRYFLFHGTLLGAVRHQGHNPFDNDIDIAIPEEDFHKLQAAAEEL 140
[Close]
BLAST of Lipopolysaccharide choline vs. Ensembl Nematostella
Match: EDO32420 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SV38])

HSP 1 Score: 49.6766 bits (117), Expect = 1.569e-6
Identity = 43/169 (25.44%), Postives = 78/169 (46.15%), Query Frame = 2 
Query:  362 QKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIV-WSSFKSNMISALEELNQTHNLISYD-GKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFI----KKKHMFPLIL-------RNFDNLQMPTPCATDDILEYMY 829
            +++ +++L +   S ++   +   L  GS+IGA+R+   +PWD D+DL      F      A+ E  Q+  LI +D     G   F K +G K S        +D+F  +++N  +++   E +      K  H FP+ L       R F  +++  P    +IL ++Y
Sbjct:  298 ERTKLIELTSQIHSILNSIGLQHWLMYGSIIGALRYGSPLPWDHDVDLGARREDFDKLDRKAIIETFQSAGLIVHDFILRRGSITFSK-EGGKLS--------VDLFLFQDYNGIIWRTGAEPWLFFLHYKYYHTFPVNLIQPPLPKRKFGPIELSVPRGELEILRHLY 457
[Close]
BLAST of Lipopolysaccharide choline vs. Planmine SMEST
Match: SMESG000060269.1 (SMESG000060269.1)

HSP 1 Score: 604.749 bits (1558), Expect = 0.000e+0
Identity = 310/312 (99.36%), Postives = 310/312 (99.36%), Query Frame = 2 
Query:  167 MTTNENQMKYLLKXXXXXXXXXXXXXXXXCYFVKWKDMKFIENRAVNRTIKNPYESYFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRCLDKLSHFNSKLSIKRLK 1102
            MTTNENQMKYLLKLFVYFLVI ITFLILFCYFVKWKDMKFIENRAVNRTIKNPYESYFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSN KTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRCLDKLSHFNSKLSIKRLK
Sbjct:    1 MTTNENQMKYLLKLFVYFLVIVITFLILFCYFVKWKDMKFIENRAVNRTIKNPYESYFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNWKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRCLDKLSHFNSKLSIKRLK 312
[Close]
BLAST of Lipopolysaccharide choline vs. Planmine SMEST
Match: SMESG000052426.1 (SMESG000052426.1)

HSP 1 Score: 169.859 bits (429), Expect = 2.795e-49
Identity = 104/286 (36.36%), Postives = 160/286 (55.94%), Query Frame = 2 
Query:  254 CYFVK-----WKDMKFIENRAVNRTIKN-PYESYFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLK-EFNETMFKVEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRCLDKLSHFNSKLSI 1090
            C F K     W     I N ++  T K+   ++YF+  M+  Q   ML+LL +F + +D+ NIT+  YGG+LIG  RH G IPWDDDID+++  + K  +    + ++  H L+SYD K TG WKFY L+    + KPF+YPY+DIFF +   N T++      +      MFPLI R F+ + + TPC    +LE  YG+L+ C SP +NHS E++++    ++V C+ LK  Y F  +K+ +  ++  I E+L    K IH   Y  P +C  K+    S +++
Sbjct:   12 CLFSKPHSRLWNSTSLILNISLKLTTKSLNLKTYFYKRMSNSQTFEMLELLQVFINLLDRSNITYVAYGGTLIGIYRHHGMIPWDDDIDILIDGNQKELLKLIAKNISAPHKLLSYDNKPTGHWKFYNLNSATINGKPFKYPYIDIFFFQYSSNGTIYDESYPEFNTTILRMFPLIKRFFNGISINTPCQIKPVLESFYGNLDNCHSPYYNHSKEHYITHH--RSVKCEKLKKKYSFVVRKISENSSRKTIVETLIKRTKIIHKLVYSVPKQCNGKMKILKSDMNV 295
[Close]
BLAST of Lipopolysaccharide choline vs. Planmine SMEST
Match: SMESG000053934.1 (SMESG000053934.1)

HSP 1 Score: 132.88 bits (333), Expect = 7.111e-35
Identity = 81/234 (34.62%), Postives = 128/234 (54.70%), Query Frame = 2 
Query:  380 DLLALFKS---QMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETG-KWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEI-ESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRCLDKLS 1066
            DL+ LFK+   ++DK  I +  + G+L+G  RH G I WDD I +++    K ++I  L   NQTH    Y+ KE   K    KL   +FS   +R+P++DIFF+ + +     VEI +++ I+ K+++PLI R F  + + TPC    IL  +YG++ +C SP +NH+ E  ++ +N+   +C LL+   PF ++ V K   Q    E L L    +    Y  PL+C D  S
Sbjct:  129 DLIQLFKTCIKKLDKSKIPYMAFSGTLLGIHRHHGLIDWDDKISILINRDIKEDVIKVL---NQTH----YEVKEVSIKHNSTKL---QFSSIRYRFPFIDIFFMTKQSNNDRNVEINDNFLIRGKYLYPLIKRPFHGIHVNTPCNISGILNDLYGNITQCQSPVYNHAYEPKITLTNVVLKNCSLLENSVPFVKRSVMKNATQLTYYEDLVLKSNVLSNFIYSSPLKCNDIFS 352
[Close]
BLAST of Lipopolysaccharide choline vs. Planmine SMEST
Match: SMESG000023088.1 (SMESG000023088.1)

HSP 1 Score: 130.183 bits (326), Expect = 1.119e-33
Identity = 91/253 (35.97%), Postives = 143/253 (56.52%), Query Frame = 2 
Query:  335 YFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKKKH-MFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRCLDKLSHFNSKLSI 1090
            +F   ++  +K  MLDL  +F  QM+ +N+T+  YGG+LIG  RH G IPWDDDID+++ ++ K  +   + +L++TH L   D     KWKF+ ++G       F+YPY+DIF +K+ +E   +VE E       H ++PL+ R F+ L + +PC    IL+  Y D NKCTS  ++H  E ++   N+  V+C +LK  YPF +K     +N+  + E L      + IA+Y  P  C ++ S + S L I
Sbjct:  123 HFKRRLSSEKKEKMLDLFRVFIRQMELYNLTYMAYGGTLIGINRHHGIIPWDDDIDILIDAAQKRRVEKVMGKLHKTHKLYVVDESLHIKWKFFNINGLYTEGYDFKYPYIDIFSMKKISEDEVEVEGEDESNMDLHDIYPLVKRPFNGLTVYSPCNVKKILKSTYTDFNKCTSSYYSHEFEDYL-RGNMIEVNCRILKEHYPFVKKNFIAEENKIVLTERLIKNGTVLQIAKYSMPDACTNERSFYPSDLEI 374
[Close]
BLAST of Lipopolysaccharide choline vs. Planmine SMEST
Match: SMESG000023088.1 (SMESG000023088.1)

HSP 1 Score: 129.798 bits (325), Expect = 1.237e-33
Identity = 91/253 (35.97%), Postives = 143/253 (56.52%), Query Frame = 2 
Query:  335 YFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKKKH-MFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRCLDKLSHFNSKLSI 1090
            +F   ++  +K  MLDL  +F  QM+ +N+T+  YGG+LIG  RH G IPWDDDID+++ ++ K  +   + +L++TH L   D     KWKF+ ++G       F+YPY+DIF +K+ +E   +VE E       H ++PL+ R F+ L + +PC    IL+  Y D NKCTS  ++H  E ++   N+  V+C +LK  YPF +K     +N+  + E L      + IA+Y  P  C ++ S + S L I
Sbjct:  127 HFKRRLSSEKKEKMLDLFRVFIRQMELYNLTYMAYGGTLIGINRHHGIIPWDDDIDILIDAAQKRRVEKVMGKLHKTHKLYVVDESLHIKWKFFNINGLYTEGYDFKYPYIDIFSMKKISEDEVEVEGEDESNMDLHDIYPLVKRPFNGLTVYSPCNVKKILKSTYTDFNKCTSSYYSHEFEDYL-RGNMIEVNCRILKEHYPFVKKNFIAEENKIVLTERLIKNGTVLQIAKYSMPDACTNERSFYPSDLEI 378
The following BLAST results are available for this feature:
BLAST of Lipopolysaccharide choline vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2
Match NameE-valueIdentityDescription
FKTN1.628e-627.98fukutin [Source:HGNC Symbol;Acc:HGNC:3622][more]
FKTN1.628e-627.98fukutin [Source:HGNC Symbol;Acc:HGNC:3622][more]
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BLAST of Lipopolysaccharide choline vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Lipopolysaccharide choline vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Lipopolysaccharide choline vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Lipopolysaccharide choline vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Lipopolysaccharide choline vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Fktn2.155e-627.98fukutin [Source:MGI Symbol;Acc:MGI:2179507][more]
Fktn2.554e-627.98fukutin [Source:MGI Symbol;Acc:MGI:2179507][more]
Fktn2.554e-627.98fukutin [Source:MGI Symbol;Acc:MGI:2179507][more]
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BLAST of Lipopolysaccharide choline vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P14184|LICD_HAEIN1.472e-952.08Lipopolysaccharide cholinephosphotransferase LicD ... [more]
sp|Q68W49|Y683_RICTY4.236e-626.83Uncharacterized protein RT0683 OS=Rickettsia typhi... [more]
sp|Q60HG0|FKTN_MACFA5.265e-626.54Fukutin OS=Macaca fascicularis OX=9541 GN=FKTN PE=... [more]
sp|Q9ZCN4|Y689_RICPR7.628e-626.40Uncharacterized protein RP689 OS=Rickettsia prowaz... [more]
sp|O75072|FKTN_HUMAN7.820e-627.98Fukutin OS=Homo sapiens OX=9606 GN=FKTN PE=1 SV=2[more]
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BLAST of Lipopolysaccharide choline vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3S1B5A01.512e-3235.04Uncharacterized protein (Fragment) OS=Elysia chlor... [more]
A0A1I8HH403.423e-3230.71Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A0L8FFU73.335e-3136.24Uncharacterized protein OS=Octopus bimaculoides OX... [more]
A0A0L8GPU73.224e-3034.30Uncharacterized protein OS=Octopus bimaculoides OX... [more]
A0A1I8H9824.557e-2731.10Uncharacterized protein OS=Macrostomum lignano OX=... [more]
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BLAST of Lipopolysaccharide choline vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Lipopolysaccharide choline vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Lipopolysaccharide choline vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Lipopolysaccharide choline vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO435902.523e-727.22Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO457813.617e-731.19Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO294771.293e-640.98Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO358541.403e-636.11Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO324201.569e-625.44Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Lipopolysaccharide choline vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Lipopolysaccharide choline vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000060269.10.000e+099.36SMESG000060269.1[more]
SMESG000052426.12.795e-4936.36SMESG000052426.1[more]
SMESG000053934.17.111e-3534.62SMESG000053934.1[more]
SMESG000023088.11.119e-3335.97SMESG000023088.1[more]
SMESG000023088.11.237e-3335.97SMESG000023088.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30001360 ID=SMED30001360|Name=Lipopolysaccharide choline|organism=Schmidtea mediterranea sexual|type=transcript|length=1261bp
GGTAGGGGTACTAGTGTGTTATGTTGCATTTTGCCCCTAACCACCTACTA
ACTTACAATTAAAGACTAAAATTGATCGAACTATTTCAACAAACATTTCA
TTGGTCGAATTATTTTTTTGAAACTAATCGTATTCGTCGATACAATTCAG
TTATCTATAAAGCAGTATGACAACAAATGAAAATCAAATGAAATATCTAT
TGAAATTATTCGTTTACTTCCTCGTCATTTTTATCACATTTTTGATATTA
TTCTGCTACTTCGTAAAATGGAAAGATATGAAATTTATTGAAAATAGAGC
TGTCAATCGCACAATTAAAAATCCATACGAGTCATATTTTCACCATACAA
TGACTCCAATTCAAAAGTCTGGAATGCTTGATTTATTAGCTCTTTTCAAA
TCTCAAATGGATAAATTCAACATCACATTTTCTCTTTATGGTGGTTCATT
AATTGGAGCTGTAAGACATCAAGGATTTATTCCATGGGATGATGATATTG
ATTTAATCGTATGGAGCTCATTTAAATCCAATATGATTTCCGCATTAGAA
GAACTAAACCAAACGCACAACCTTATTTCGTATGACGGAAAAGAGACCGG
AAAATGGAAGTTTTACAAGCTTGATGGAAAGAAATTCTCTCACAAACCTT
TCAGGTATCCATATCTCGACATTTTCTTTCTGAAAGAATTCAATGAAACG
ATGTTCAAAGTAGAAATCGAGTCATATTTCATTAAGAAGAAACACATGTT
TCCATTAATTCTTCGAAACTTTGATAACCTTCAAATGCCGACACCTTGTG
CAACAGATGATATCTTAGAATATATGTATGGTGACTTAAACAAATGCACC
AGTCCGTCTTGGAATCATAGCACCGAATATTTTGTGAGTTCCTCAAATTT
GAAGACAGTCAGTTGTGATTTATTGAAACCATTTTATCCCTTTACGGAGA
AAAAAGTCCACAAAATGAAAAATCAGTTTAGAATAGAAGAATCCCTGAAA
TTGGGACCAAAACCAATTCATATTGCTGAGTATTACAGACCCTTGAGATG
CTTAGATAAATTATCTCATTTTAATTCTAAATTATCAATAAAAAGGTTAA
AATAGACTTAAAATATATTTTAGAACAAATATATAATCATAATAATCATA
ATTTACATTAAAATCTTGATGCTGGATAACTTAAAATATGTGAGACAACA
TTTATTATGTAATAAATTGGAAAATTGTAACTAATTATTAGAAAACGCCA
CTCGAACATCA
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protein sequence of SMED30001360-orf-1

>SMED30001360-orf-1 ID=SMED30001360-orf-1|Name=SMED30001360-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=313bp
MTTNENQMKYLLKLFVYFLVIFITFLILFCYFVKWKDMKFIENRAVNRTI
KNPYESYFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVR
HQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFY
KLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKKKHMFPLILR
NFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSC
DLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRCLDKLS
HFNSKLSIKRLK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000020protonephridia
PLANA:0000026gut
PLANA:0000070intestinal phagocyte
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR007074LicD_fam
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: molecular function
TermDefinition
GO:0016740transferase activity
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007074LicD familyPFAMPF04991LicDcoord: 83..152
e-value: 1.3E-14
score: 54.9
NoneNo IPR availablePANTHERPTHR43404FAMILY NOT NAMEDcoord: 61..250
NoneNo IPR availableTMHMMTMhelixcoord: 13..35