Lipopolysaccharide choline
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30001360 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 17
Homology
BLAST of Lipopolysaccharide choline vs. Ensembl Human
Match: FKTN (fukutin [Source:HGNC Symbol;Acc:HGNC:3622]) HSP 1 Score: 51.6026 bits (122), Expect = 1.628e-6 Identity = 47/168 (27.98%), Postives = 77/168 (45.83%), Query Frame = 2 Query: 380 DLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDL-IVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKL-DGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKK-KHMFP---LILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWN 865 +LL L ++K + F L G+ +G R IP+ D+DL I +KS++I A + D K KF K+ D + S + LD+FF E + M+ ++ KK K++FP L F ++++ PC T + +E YG K +W+ Sbjct: 279 ELLQLAAKTLNKLGVPFWLSSGTCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQ-----------DAGLPLKHKFGKVEDSLELSFQGKDDVKLDVFFFYEETDHMWNGGTQAKTGKKFKYLFPKFTLCWTEFVDMKVHVPCETLEYIEANYGKTWKIPVKTWD 435
BLAST of Lipopolysaccharide choline vs. Ensembl Human
Match: FKTN (fukutin [Source:HGNC Symbol;Acc:HGNC:3622]) HSP 1 Score: 51.6026 bits (122), Expect = 1.628e-6 Identity = 47/168 (27.98%), Postives = 77/168 (45.83%), Query Frame = 2 Query: 380 DLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDL-IVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKL-DGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKK-KHMFP---LILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWN 865 +LL L ++K + F L G+ +G R IP+ D+DL I +KS++I A + D K KF K+ D + S + LD+FF E + M+ ++ KK K++FP L F ++++ PC T + +E YG K +W+ Sbjct: 279 ELLQLAAKTLNKLGVPFWLSSGTCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQ-----------DAGLPLKHKFGKVEDSLELSFQGKDDVKLDVFFFYEETDHMWNGGTQAKTGKKFKYLFPKFTLCWTEFVDMKVHVPCETLEYIEANYGKTWKIPVKTWD 435
BLAST of Lipopolysaccharide choline vs. Ensembl Mouse
Match: Fktn (fukutin [Source:MGI Symbol;Acc:MGI:2179507]) HSP 1 Score: 50.8322 bits (120), Expect = 2.155e-6 Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 2 Query: 380 DLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDL-IVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKL-DGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKK-KHMFP---LILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWN 865 +LL L + + F L G+ +G R G IP+ D+DL I +K ++I A +E K KF K+ D + S + LDIFF E + ++ ++ KK K++FP L F ++++ PC T D +E YG K +W+ Sbjct: 318 ELLQLAAKTLKDLGVPFWLSSGTCLGWYRQCGIIPYSKDVDLGIFIQDYKPDIILAFQEAGLPL-----------KHKFGKVEDSLELSFQGKNDVKLDIFFFYEEADHLWNGGTQARTGKKFKYLFPKFTLCWTEFVDIKVHVPCETVDYIEANYGKTWKIPIKTWD 474
BLAST of Lipopolysaccharide choline vs. Ensembl Mouse
Match: Fktn (fukutin [Source:MGI Symbol;Acc:MGI:2179507]) HSP 1 Score: 50.447 bits (119), Expect = 2.554e-6 Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 2 Query: 380 DLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDL-IVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKL-DGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKK-KHMFP---LILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWN 865 +LL L + + F L G+ +G R G IP+ D+DL I +K ++I A +E K KF K+ D + S + LDIFF E + ++ ++ KK K++FP L F ++++ PC T D +E YG K +W+ Sbjct: 279 ELLQLAAKTLKDLGVPFWLSSGTCLGWYRQCGIIPYSKDVDLGIFIQDYKPDIILAFQEAGLPL-----------KHKFGKVEDSLELSFQGKNDVKLDIFFFYEEADHLWNGGTQARTGKKFKYLFPKFTLCWTEFVDIKVHVPCETVDYIEANYGKTWKIPIKTWD 435
BLAST of Lipopolysaccharide choline vs. Ensembl Mouse
Match: Fktn (fukutin [Source:MGI Symbol;Acc:MGI:2179507]) HSP 1 Score: 50.447 bits (119), Expect = 2.554e-6 Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 2 Query: 380 DLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDL-IVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKL-DGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKK-KHMFP---LILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWN 865 +LL L + + F L G+ +G R G IP+ D+DL I +K ++I A +E K KF K+ D + S + LDIFF E + ++ ++ KK K++FP L F ++++ PC T D +E YG K +W+ Sbjct: 279 ELLQLAAKTLKDLGVPFWLSSGTCLGWYRQCGIIPYSKDVDLGIFIQDYKPDIILAFQEAGLPL-----------KHKFGKVEDSLELSFQGKNDVKLDIFFFYEEADHLWNGGTQARTGKKFKYLFPKFTLCWTEFVDIKVHVPCETVDYIEANYGKTWKIPIKTWD 435
BLAST of Lipopolysaccharide choline vs. UniProt/SwissProt
Match: sp|P14184|LICD_HAEIN (Lipopolysaccharide cholinephosphotransferase LicD OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=licD PE=3 SV=2) HSP 1 Score: 62.003 bits (149), Expect = 1.472e-9 Identity = 25/48 (52.08%), Postives = 38/48 (79.17%), Query Frame = 2 Query: 362 QKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDL 505 Q+ L++L F + +++ I++SL GG+LIGA+RH+GFIPWDDDID+ Sbjct: 9 QQLVCLNILDYFHALCERYKISYSLGGGTLIGAIRHKGFIPWDDDIDV 56
BLAST of Lipopolysaccharide choline vs. UniProt/SwissProt
Match: sp|Q68W49|Y683_RICTY (Uncharacterized protein RT0683 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=RT0683 PE=3 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 4.236e-6 Identity = 55/205 (26.83%), Postives = 90/205 (43.90%), Query Frame = 2 Query: 359 IQKSGMLDLLALFKSQ---MDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESY---FIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTE-YFVSSSNLKT---VSCDLLKPFYPF 943 I + L L L K + K NI + + G+L+GAVRHQG IP+DDD+D+ + + + L + Q I ++ K Y + G++ LDIF + + + + Y F + ++PL F N+++ P L Y + +K HS F+S+ KT ++ +LLKP PF Sbjct: 99 ISEKKALSLYQLMKDTHELLTKNNIKYWIESGTLLGAVRHQGIIPFDDDLDIGIMHEDEIHFQQILPQFKQLGYRIKHN-------KIYVICGERC---------LDIFIFHKEKDKFVHILYDQYPNDFFYENELYPLKKYKFGNIEVYGPFDPIGNLNRQYPEWDKYAIIYSPHSFHLLFLSNIEKKTKFILTPELLKPAQPF 287
BLAST of Lipopolysaccharide choline vs. UniProt/SwissProt
Match: sp|Q60HG0|FKTN_MACFA (Fukutin OS=Macaca fascicularis OX=9541 GN=FKTN PE=1 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 5.265e-6 Identity = 56/211 (26.54%), Postives = 92/211 (43.60%), Query Frame = 2 Query: 278 MKFIENRAVNRTIKNPYE---SYFHHTMTPIQKSGML------DLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDL-IVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKL-DGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKK-KHMFP---LILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWN 865 M F+E +R I+ Y+ ++F + M +LL L ++K + F L G+ +G R IP+ D+DL I +KS++I A + D K KF K+ D + S + LDIFF E + M+ ++ KK K++FP L F ++++ PC T + +E YG K +W+ Sbjct: 236 MHFVEEVPHSRFIECRYKEARAFFQQYLDDNTVEAMAFRKSAKELLQLAAKTLNKLGVPFWLSSGTCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQ-----------DAGLPLKHKFGKVEDSLELSFQGKDDVKLDIFFFYEETDHMWNGGTQAKTGKKFKYLFPKFTLCWTEFVDMKVHVPCETLEYIEANYGKTWKIPVKTWD 435
BLAST of Lipopolysaccharide choline vs. UniProt/SwissProt
Match: sp|Q9ZCN4|Y689_RICPR (Uncharacterized protein RP689 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=RP689 PE=3 SV=1) HSP 1 Score: 50.8322 bits (120), Expect = 7.628e-6 Identity = 52/197 (26.40%), Postives = 90/197 (45.69%), Query Frame = 2 Query: 407 MDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKE------FNETMFKVEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWN--------HSTEY-FVSSSNLKT---VSCDLLKPFYPF 943 + K NI + + G+L+GAVRHQG IP+DDD+D+ + + ++ L + Q +SY+ + Y + K LDIF + + + M + + +F ++PL F ++++ P +D I G+LN+ P W+ HS F+S+ KT ++ +LLKP P Sbjct: 69 LTKNNIKYWIESGTLLGAVRHQGIIPFDDDLDIGIMHEDEIHLQQILPQFEQLGYTVSYE-------RAYNICKKTC---------LDIFIVHKEKNKFIYTNIMLRDKYPEHFFYDHELYPLKKYKFGSIEVYGP--SDPI-----GNLNR-QYPEWDKYAIIYSPHSLHLPFLSNIEKKTKFILTPELLKPAQPL 241
BLAST of Lipopolysaccharide choline vs. UniProt/SwissProt
Match: sp|O75072|FKTN_HUMAN (Fukutin OS=Homo sapiens OX=9606 GN=FKTN PE=1 SV=2) HSP 1 Score: 51.6026 bits (122), Expect = 7.820e-6 Identity = 47/168 (27.98%), Postives = 77/168 (45.83%), Query Frame = 2 Query: 380 DLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDL-IVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKL-DGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKK-KHMFP---LILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWN 865 +LL L ++K + F L G+ +G R IP+ D+DL I +KS++I A + D K KF K+ D + S + LD+FF E + M+ ++ KK K++FP L F ++++ PC T + +E YG K +W+ Sbjct: 279 ELLQLAAKTLNKLGVPFWLSSGTCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQ-----------DAGLPLKHKFGKVEDSLELSFQGKDDVKLDVFFFYEETDHMWNGGTQAKTGKKFKYLFPKFTLCWTEFVDMKVHVPCETLEYIEANYGKTWKIPVKTWD 435
BLAST of Lipopolysaccharide choline vs. TrEMBL
Match: A0A3S1B5A0 (Uncharacterized protein (Fragment) OS=Elysia chlorotica OX=188477 GN=EGW08_011999 PE=4 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.512e-32 Identity = 82/234 (35.04%), Postives = 118/234 (50.43%), Query Frame = 2 Query: 338 FHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIE---SYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAE 1030 F +T +K +L + F FN+TF LYGG+L+G+ RH IPWDDDID+ V + K + AL LN T L+ + WKFY K HKPFR+PY+DIFF ++ +F +IE S+ +K +FPL +R F +P PC TD +L Y N C+S ++H TE + + C L YPF ++ N + E +K+G H + Sbjct: 1 FRPIITVEEKKLLLLVFQKFVRACKDFNVTFFLYGGTLLGSFRHHDLIPWDDDIDVFVPAREKHILRRALSPLNYTGYLLYQPLDK--PWKFYWNKTKTLLHKPFRWPYVDIFFYEDNATHIFDQQIEYRASFAYRKVDVFPLTVRPFAGAFLPVPCNTDRVLRQNYSP-NLCSSQRFSHRTETLPAWGPHLIIPCKRLHDVYPFVHRQWSHTGNL--VTEEVKIGATTFHSVQ 229
BLAST of Lipopolysaccharide choline vs. TrEMBL
Match: A0A1I8HH40 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig006809g1 PE=4 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 3.423e-32 Identity = 78/254 (30.71%), Postives = 130/254 (51.18%), Query Frame = 2 Query: 329 ESYFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISY-DGKETGKWKFYKLDGKKFSHKP---FRYPYLDIFFLKEFNETMFK-VEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGD----LNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEY-YRPLRCLDK 1060 E YF+ +T Q M +L +F M ++TF L G+L+G++RH G IPWDDD+D++V + M +AL++L + L + + GKWKF++ D F +P FR+PY+DIFF++ N + + + ++K +FPL LR ++ + +P PCA D + + D C S ++H E + +++ C L +PF R+ E LK+G K + E+ +RP C + Sbjct: 72 EDYFYSPVTEQQAMQMRSVLRVFADAMKNASVTFFLCSGTLLGSLRHHGRIPWDDDVDVMVLIEQRQQMEAALKQLEPEYRLYRFMEWAALGKWKFFRADSDAFLLQPWSKFRWPYVDIFFVQGHNASHLRHAYYGDIYFRRKDLFPLQLRPYEGMMLPVPCAPGDFMRAEFQDPGFNWTLCQSRGFSHVMEVPLPHWRQRSLLCSRLASRFPFVYTATSTAD---RVTEVLKVGEKVLR--EFSFRPPACTGR 320
BLAST of Lipopolysaccharide choline vs. TrEMBL
Match: A0A0L8FFU7 (Uncharacterized protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22024326mg PE=4 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 3.335e-31 Identity = 79/218 (36.24%), Postives = 120/218 (55.05%), Query Frame = 2 Query: 332 SYFHHTMTPI-QKSGMLDLLAL------FKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEI----ESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEK 952 ++F H++ QK + DL AL F DK N+T+ LY GSL+G+ RH G IPWDDD+D+++ SS K +I L++ + T+ L + +WKFY + HKPFR+PY+DIFF +E +E ++ EI SY IKK +FPL R F+ + +PC + + ++ D+ KC + S+NH E + V C L +PF + Sbjct: 113 AHFRHSLAEYKQKMSLTDLKALNEMLQVFTKAADKANLTYFLYAGSLLGSYRHHGIIPWDDDVDIMMNSSQKGKIIETLKKFSPTYGLYIH---PRNQWKFYYANTNTLLHKPFRWPYIDIFFFQEDDEYIWD-EIPTFKSSYTIKKSSIFPLQRRPFNGFMLWSPC--NPVENLLFYDIEKCAASSYNHDIEEWKPVYTWAKVQCTQLMDTFPFVWR 324
BLAST of Lipopolysaccharide choline vs. TrEMBL
Match: A0A0L8GPU7 (Uncharacterized protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22030157mg PE=4 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 3.224e-30 Identity = 83/242 (34.30%), Postives = 121/242 (50.00%), Query Frame = 2 Query: 338 FHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKE----FNETMFKVEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRC 1051 F +T + +L L +F D N+ + LYGGSL+G+ RH GFIPWDDDID+I+ SS K + AL + L + K+ WKFY+ D + KPFR+PY+DIFF +E + F + +Y KK +FPL R FDNL +P PC T+ L D+ C + +++H E ++ + C L+ +P V + K E L G I + +Y P C Sbjct: 49 FQPRVTATEYRLLLTLTRIFAKAADTENLVYFLYGGSLLGSYRHHGFIPWDDDIDVIMNSSQKEEIRRALSAYEPKYKLYAPPHKQ---WKFYRADSEALKEKPFRWPYIDIFFFQEDATHIWDEFFWYQF-TYVYDKKRVFPLQKRPFDNLSLPAPCDTESFLGTYAADM--CRTNAFSHKEERWLYRQ--AQLPCYQLRDSFPL----VQRTKTDDGWTEVLWNG--SIAVQYFYSPHAC 276
BLAST of Lipopolysaccharide choline vs. TrEMBL
Match: A0A1I8H982 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig018254g1 PE=4 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 4.557e-27 Identity = 79/254 (31.10%), Postives = 130/254 (51.18%), Query Frame = 2 Query: 329 ESYFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISY-DGKETGKWKFYKLDGKKFSHKP---FRYPYLDIFFLKEFNETMFK-VEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGD----LNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEY-YRPLRCLDK 1060 E YF+ +T Q M +L +F M N+TF L G+L+G++RH G IPWDDD+D++V + M +AL++L + L + + GKWKF++ D F +P FR+PY+DIFF++ N + + + ++K +FPL LR ++ + +P PCA D + + D C S ++H E + +++ C L +PF R+ E LK+G K + E+ +RP C + Sbjct: 72 EDYFYSPVTEQQAVQMRSVLRVFADAMKNANVTFFLCSGTLLGSLRHHGRIPWDDDVDVMVLVEQRQQMEAALKQLEPEYRLYRFMEWAALGKWKFFRADSDAFLLQPWSKFRWPYVDIFFVQGHNASHLRHAYYGDIYFRRKDLFPLQLRPYEGMMLPAPCAPGDFMRAEFQDPGFNWTLCQSRGFSHVMEVPLPHWRQRSLLCSRLASRFPFVYTATSTAD---RVTEVLKVGEKVLR--EFSFRPPACTGR 320
BLAST of Lipopolysaccharide choline vs. Ensembl Nematostella
Match: EDO43590 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RY81]) HSP 1 Score: 51.9878 bits (123), Expect = 2.523e-7 Identity = 43/158 (27.22%), Postives = 71/158 (44.94%), Query Frame = 2 Query: 407 MDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSN---MISALEELNQTHNLISYDG---KETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFK----------VEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYG 832 +D +++ L GGSL+GAVRH IPWD D+D+ ++ S + ALE+ I G +++ + +F+++ + +H ++DIF E N M K +E +F+K PL F + P D LE +G Sbjct: 357 LDNSGVSYWLEGGSLLGAVRHSDIIPWDYDVDIGIYQSQIRKCKPLFYALEQSRSGSKFIDEKGFVWEKSREGEFFRVQFSQINHL-----HVDIFPFYEKNGKMTKDTWFKTHRQDMEFPVHFLK-----PLTKIKFVGVLASAPNHIKDFLELKFG 504
BLAST of Lipopolysaccharide choline vs. Ensembl Nematostella
Match: EDO45781 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RRL8]) HSP 1 Score: 50.0618 bits (118), Expect = 3.617e-7 Identity = 34/109 (31.19%), Postives = 53/109 (48.62%), Query Frame = 2 Query: 362 QKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGK--KFSHKPFRYPYLDIFFL 682 Q +G LD L + I + GG+ +G VRH+G IPWDDDIDL + S + AL+ + +T + K+ ++ Y + K R+P+ DIF + Sbjct: 26 QMAGDLDQL------FTEHQINYWTDGGTTLGCVRHKGLIPWDDDIDLCI-SKNDEQKVLALKPVLETRGYDIVNYKKPFGYRIYPVANSLPLPPGKVGRFPFCDIFLM 127
BLAST of Lipopolysaccharide choline vs. Ensembl Nematostella
Match: EDO29477 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T3I7]) HSP 1 Score: 49.2914 bits (116), Expect = 1.293e-6 Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 2 Query: 374 MLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEEL 556 +L +LAL DK + + L+ G+L+GAVRHQG P+D+DID+ + + +A EEL Sbjct: 83 LLRVLALL---CDKHGVRYFLFHGTLLGAVRHQGHNPFDNDIDIAIPEEDFHKLQAAAEEL 140
BLAST of Lipopolysaccharide choline vs. Ensembl Nematostella
Match: EDO35854 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SK93]) HSP 1 Score: 48.9062 bits (115), Expect = 1.403e-6 Identity = 26/72 (36.11%), Postives = 43/72 (59.72%), Query Frame = 2 Query: 341 HHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEEL 556 H ++ + + +L +LAL DK + + L+ G+L+GAVRHQG P+D+DID+ + + +A EEL Sbjct: 72 HLRVSQLILTRLLRVLALL---CDKHGVRYFLFHGTLLGAVRHQGHNPFDNDIDIAIPEEDFHKLQAAAEEL 140
BLAST of Lipopolysaccharide choline vs. Ensembl Nematostella
Match: EDO32420 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SV38]) HSP 1 Score: 49.6766 bits (117), Expect = 1.569e-6 Identity = 43/169 (25.44%), Postives = 78/169 (46.15%), Query Frame = 2 Query: 362 QKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIV-WSSFKSNMISALEELNQTHNLISYD-GKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFI----KKKHMFPLIL-------RNFDNLQMPTPCATDDILEYMY 829 +++ +++L + S ++ + L GS+IGA+R+ +PWD D+DL F A+ E Q+ LI +D G F K +G K S +D+F +++N +++ E + K H FP+ L R F +++ P +IL ++Y Sbjct: 298 ERTKLIELTSQIHSILNSIGLQHWLMYGSIIGALRYGSPLPWDHDVDLGARREDFDKLDRKAIIETFQSAGLIVHDFILRRGSITFSK-EGGKLS--------VDLFLFQDYNGIIWRTGAEPWLFFLHYKYYHTFPVNLIQPPLPKRKFGPIELSVPRGELEILRHLY 457
BLAST of Lipopolysaccharide choline vs. Planmine SMEST
Match: SMESG000060269.1 (SMESG000060269.1) HSP 1 Score: 604.749 bits (1558), Expect = 0.000e+0 Identity = 310/312 (99.36%), Postives = 310/312 (99.36%), Query Frame = 2 Query: 167 MTTNENQMKYLLKXXXXXXXXXXXXXXXXCYFVKWKDMKFIENRAVNRTIKNPYESYFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRCLDKLSHFNSKLSIKRLK 1102 MTTNENQMKYLLKLFVYFLVI ITFLILFCYFVKWKDMKFIENRAVNRTIKNPYESYFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSN KTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRCLDKLSHFNSKLSIKRLK Sbjct: 1 MTTNENQMKYLLKLFVYFLVIVITFLILFCYFVKWKDMKFIENRAVNRTIKNPYESYFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNWKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRCLDKLSHFNSKLSIKRLK 312
BLAST of Lipopolysaccharide choline vs. Planmine SMEST
Match: SMESG000052426.1 (SMESG000052426.1) HSP 1 Score: 169.859 bits (429), Expect = 2.795e-49 Identity = 104/286 (36.36%), Postives = 160/286 (55.94%), Query Frame = 2 Query: 254 CYFVK-----WKDMKFIENRAVNRTIKN-PYESYFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLK-EFNETMFKVEIESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRCLDKLSHFNSKLSI 1090 C F K W I N ++ T K+ ++YF+ M+ Q ML+LL +F + +D+ NIT+ YGG+LIG RH G IPWDDDID+++ + K + + ++ H L+SYD K TG WKFY L+ + KPF+YPY+DIFF + N T++ + MFPLI R F+ + + TPC +LE YG+L+ C SP +NHS E++++ ++V C+ LK Y F +K+ + ++ I E+L K IH Y P +C K+ S +++ Sbjct: 12 CLFSKPHSRLWNSTSLILNISLKLTTKSLNLKTYFYKRMSNSQTFEMLELLQVFINLLDRSNITYVAYGGTLIGIYRHHGMIPWDDDIDILIDGNQKELLKLIAKNISAPHKLLSYDNKPTGHWKFYNLNSATINGKPFKYPYIDIFFFQYSSNGTIYDESYPEFNTTILRMFPLIKRFFNGISINTPCQIKPVLESFYGNLDNCHSPYYNHSKEHYITHH--RSVKCEKLKKKYSFVVRKISENSSRKTIVETLIKRTKIIHKLVYSVPKQCNGKMKILKSDMNV 295
BLAST of Lipopolysaccharide choline vs. Planmine SMEST
Match: SMESG000053934.1 (SMESG000053934.1) HSP 1 Score: 132.88 bits (333), Expect = 7.111e-35 Identity = 81/234 (34.62%), Postives = 128/234 (54.70%), Query Frame = 2 Query: 380 DLLALFKS---QMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETG-KWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEI-ESYFIKKKHMFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRCLDKLS 1066 DL+ LFK+ ++DK I + + G+L+G RH G I WDD I +++ K ++I L NQTH Y+ KE K KL +FS +R+P++DIFF+ + + VEI +++ I+ K+++PLI R F + + TPC IL +YG++ +C SP +NH+ E ++ +N+ +C LL+ PF ++ V K Q E L L + Y PL+C D S Sbjct: 129 DLIQLFKTCIKKLDKSKIPYMAFSGTLLGIHRHHGLIDWDDKISILINRDIKEDVIKVL---NQTH----YEVKEVSIKHNSTKL---QFSSIRYRFPFIDIFFMTKQSNNDRNVEINDNFLIRGKYLYPLIKRPFHGIHVNTPCNISGILNDLYGNITQCQSPVYNHAYEPKITLTNVVLKNCSLLENSVPFVKRSVMKNATQLTYYEDLVLKSNVLSNFIYSSPLKCNDIFS 352
BLAST of Lipopolysaccharide choline vs. Planmine SMEST
Match: SMESG000023088.1 (SMESG000023088.1) HSP 1 Score: 130.183 bits (326), Expect = 1.119e-33 Identity = 91/253 (35.97%), Postives = 143/253 (56.52%), Query Frame = 2 Query: 335 YFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKKKH-MFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRCLDKLSHFNSKLSI 1090 +F ++ +K MLDL +F QM+ +N+T+ YGG+LIG RH G IPWDDDID+++ ++ K + + +L++TH L D KWKF+ ++G F+YPY+DIF +K+ +E +VE E H ++PL+ R F+ L + +PC IL+ Y D NKCTS ++H E ++ N+ V+C +LK YPF +K +N+ + E L + IA+Y P C ++ S + S L I Sbjct: 123 HFKRRLSSEKKEKMLDLFRVFIRQMELYNLTYMAYGGTLIGINRHHGIIPWDDDIDILIDAAQKRRVEKVMGKLHKTHKLYVVDESLHIKWKFFNINGLYTEGYDFKYPYIDIFSMKKISEDEVEVEGEDESNMDLHDIYPLVKRPFNGLTVYSPCNVKKILKSTYTDFNKCTSSYYSHEFEDYL-RGNMIEVNCRILKEHYPFVKKNFIAEENKIVLTERLIKNGTVLQIAKYSMPDACTNERSFYPSDLEI 374
BLAST of Lipopolysaccharide choline vs. Planmine SMEST
Match: SMESG000023088.1 (SMESG000023088.1) HSP 1 Score: 129.798 bits (325), Expect = 1.237e-33 Identity = 91/253 (35.97%), Postives = 143/253 (56.52%), Query Frame = 2 Query: 335 YFHHTMTPIQKSGMLDLLALFKSQMDKFNITFSLYGGSLIGAVRHQGFIPWDDDIDLIVWSSFKSNMISALEELNQTHNLISYDGKETGKWKFYKLDGKKFSHKPFRYPYLDIFFLKEFNETMFKVEIESYFIKKKH-MFPLILRNFDNLQMPTPCATDDILEYMYGDLNKCTSPSWNHSTEYFVSSSNLKTVSCDLLKPFYPFTEKKVHKMKNQFRIEESLKLGPKPIHIAEYYRPLRCLDKLSHFNSKLSI 1090 +F ++ +K MLDL +F QM+ +N+T+ YGG+LIG RH G IPWDDDID+++ ++ K + + +L++TH L D KWKF+ ++G F+YPY+DIF +K+ +E +VE E H ++PL+ R F+ L + +PC IL+ Y D NKCTS ++H E ++ N+ V+C +LK YPF +K +N+ + E L + IA+Y P C ++ S + S L I Sbjct: 127 HFKRRLSSEKKEKMLDLFRVFIRQMELYNLTYMAYGGTLIGINRHHGIIPWDDDIDILIDAAQKRRVEKVMGKLHKTHKLYVVDESLHIKWKFFNINGLYTEGYDFKYPYIDIFSMKKISEDEVEVEGEDESNMDLHDIYPLVKRPFNGLTVYSPCNVKKILKSTYTDFNKCTSSYYSHEFEDYL-RGNMIEVNCRILKEHYPFVKKNFIAEENKIVLTERLIKNGTVLQIAKYSMPDACTNERSFYPSDLEI 378 The following BLAST results are available for this feature:
BLAST of Lipopolysaccharide choline vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of Lipopolysaccharide choline vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Lipopolysaccharide choline vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Lipopolysaccharide choline vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Lipopolysaccharide choline vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Lipopolysaccharide choline vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 3
BLAST of Lipopolysaccharide choline vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Lipopolysaccharide choline vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Lipopolysaccharide choline vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Lipopolysaccharide choline vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Lipopolysaccharide choline vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Lipopolysaccharide choline vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of Lipopolysaccharide choline vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Lipopolysaccharide choline vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30001360 ID=SMED30001360|Name=Lipopolysaccharide choline|organism=Schmidtea mediterranea sexual|type=transcript|length=1261bpback to top protein sequence of SMED30001360-orf-1 >SMED30001360-orf-1 ID=SMED30001360-orf-1|Name=SMED30001360-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=313bp MTTNENQMKYLLKLFVYFLVIFITFLILFCYFVKWKDMKFIENRAVNRTIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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