DNA-directed RNA polymerase subunit beta
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Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30001223 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Match: POLR1B (RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454]) HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0 Identity = 424/1134 (37.39%), Postives = 634/1134 (55.91%), Query Frame = 3
Query: 6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV---IGCGN-KVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
+K +Q+ TR +++SFN + G+ ++ + P EF ERI I + +I P K +I N+YP ECR TY GK+ + +N + I + +G +PIM++S LC+L L + LI+HHEE +E+GGYFI+ G + ++R L+ RRNFP+ +P K G T + + CVR++ + + L + +N L K+ F +PL +KAL + S ++FQ+ K KED S + + E +T L YLG FR L +P W N +A ++ I I++K EK+ ++ +M KL + +C +++ D+L QE+LTPG LF + L +L ++ K S + + F + P YL +TG+L T G+ Q++GL ++ D +NF R++++FR HRGA F M+++T+RRLLPESWGF+CPVHTPDG PCGL+NH + V + +L L + ++ +S+ S+ V+L+G ++G++ A A+ +R+ KV E +P E++ ++ + +PG+++FT RL+RPV N+ G+ E IGT EQ +++++ +G THQEL S+ S A F P+ ++N SPRN+YQCQM KQ+MG+ + + RSDNKLY PQ PL R YD ++M P+G N IVA+ SYT YDMEDAM++N S ERG ++YK IDL+ + D S+ I G+ +V LD DGLP IGA+L G Y+ + T + V YK + V NI +D G+ +CI ++ RN IGDKF+SRHGQKG+ S D+P +E G+VPD LFNPH PSRMT+GM+IE +AGK AAL D+T F + + +E + L++ Y+ +G ER Y G G ++++I +GVVYYQRLRH+V DK+QVRT G D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ + C C S + P+LE+ P + +A + C LC ++ + V VP V R+F+ EL MN+KV+L V
Sbjct: 69 QKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAF-KDERISFTILDAVISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRI-VMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHRSY---SECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLR--EKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKE--ELIGTMEQIFMNVAIFEDEVFAG-----VTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDP-YYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAHVCVKCGSLL----SPLLEKPP---PSWSAMRNRKYNCTLCSR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1172
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Match: POLR1B (RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454]) HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0 Identity = 424/1135 (37.36%), Postives = 634/1135 (55.86%), Query Frame = 3
Query: 6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV---IGCGN-KVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
+K +Q+ TR +++SFN + G+ ++ + P EF ERI I + +I P K +I N+YP ECR TY GK+ + +N + I + +G +PIM++S LC+L L + LI+HHEE +E+GGYFI+ G + ++R L+ RRNFP+ +P K G T + + CVR++ + + L + +N L K+ F +PL +KAL + S ++FQ+ K KED S + + E +T L YLG FR L +P W N +A ++ I I++K EK+ ++ +M KL + +C +++ D+L QE+LTPG LF + L +L ++ K S + + F + P YL +TG+L T G+ Q++GL ++ D +NF R++++FR HRGA F M+++T+RRLLPESWGF+CPVHTPDG PCGL+NH + V + +L L + ++ +S+ S+ V+L+G ++G++ A A+ +R+ KV E +P E++ ++ + +PG+++FT RL+RPV N+ G+ E IGT EQ +++++ +G THQEL S+ S A F P+ ++N SPRN+YQCQM KQ+MG+ + + RSDNKLY PQ PL R YD ++M P+G N IVA+ SYT YDMEDAM++N S ERG ++YK IDL+ + D S+ I G+ +V LD DGLP IGA+L G Y+ + T + V YK + V NI +D G+ +CI ++ RN IGDKF+SRHGQKG+ S D+P +E G+VPD LFNPH PSRMT+GM+IE +AGK AAL D+T F + + +E + L++ Y+ +G ER Y G G ++++I +GVVYYQRLRH+V DK+QVRT G D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ + C C S + P+LE+ P + +A + C LC ++ + V VP V R+F+ EL MN+KV+L V
Sbjct: 31 QKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAF-KDERISFTILDAVISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRI-VMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHRSY---SECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLR--EKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKE--ELIGTMEQIFMNVAIFEDEVFAG-----VTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDP-YYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAHVCVKCGSLL----SPLLEKPP---PSWSAMRNRKYNCTLCSR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 1135
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Match: POLR1B (RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454]) HSP 1 Score: 689.878 bits (1779), Expect = 0.000e+0 Identity = 395/1044 (37.84%), Postives = 588/1044 (56.32%), Query Frame = 3
Query: 270 TINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV---IGCGN-KVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
+N + I + +G +PIM++S LC+L L + LI+HHEE +E+GGYFI+ G + ++R L+ RRNFP+ +P K G T + + CVR++ + + L + +N L K+ F +PL +KAL + S ++FQ+ K KED S + + E +T L YLG FR L +P W N +A ++ I I++K EK+ ++ +M KL + +C +++ D+L QE+LTPG LF + L +L ++ K S + + F + P YL +TG+L T G+ Q++GL ++ D +NF R++++FR HRGA F M+++T+RRLLPESWGF+CPVHTPDG PCGL+NH + V + +L L + ++ +S+ S+ V+L+G ++G++ A A+ +R+ KV E +P E++ ++ + +PG+++FT RL+RPV N+ G+ E IGT EQ +++++ +G THQEL S+ S A F P+ ++N SPRN+YQCQM KQ+MG+ + + RSDNKLY PQ PL R YD ++M P+G N IVA+ SYT YDMEDAM++N S ERG ++YK IDL+ + D S+ I G+ +V LD DGLP IGA+L G Y+ + T + V YK + V NI +D G+ +CI ++ RN IGDKF+SRHGQKG+ S D+P +E G+VPD LFNPH PSRMT+GM+IE +AGK AAL D+T F + + +E + L++ Y+ +G ER Y G G ++++I +GVVYYQRLRH+V DK+QVRT G D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ + C C S + P+LE+ P + +A + C LC ++ + V VP V R+F+ EL MN+KV+L V
Sbjct: 65 AVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRI-VMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHRSY---SECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLR--EKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKE--ELIGTMEQIFMNVAIFEDEVFAG-----VTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDP-YYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAHVCVKCGSLL----SPLLEKPP---PSWSAMRNRKYNCTLCSR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 1079
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Match: POLR1B (RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454]) HSP 1 Score: 616.305 bits (1588), Expect = 0.000e+0 Identity = 360/955 (37.70%), Postives = 533/955 (55.81%), Query Frame = 3
Query: 540 IRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV---IGCGN-KVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVP--WHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
+ CVR++ + + L + +N L K+ F +PL +KAL + S ++FQ+ K KED S + + E +T L YLG FR L +P W N +A ++ I I++K EK+ ++ +M KL + +C +++ D+L QE+LTPG LF + L +L ++ K S + + F + P YL +TG+L T G+ Q++GL ++ D +NF R++++FR HRGA F M+++T+RRLLPESWGF+CPVHTPDG PCGL+NH + V + +L L + ++ +S+ S+ V+L+G ++G++ A A+ +R+ KV + +P E++ ++ + +PG+++FT RL+RPV N+ G+ E IGT EQ +++++ +G THQEL S+ S A F P+ ++N SPRN+YQCQM KQ+MG+ + + RSDNKLY PQ PL R YD ++M P+G N IVA+ SYT YDMEDAM++N S ERG ++YK IDL+ + D S+ I G+ +V LD DGLP IGA+L G Y+ + T + V YK + V NI +D G+ +CI ++ RN IGDKF+SRHGQKG+ S D+P +E G+VPD LFNPH PSRMT+GM+IE +AGK AAL D+T F + + +E + L++ Y+ +G ER Y G G ++++I +GVVYYQRLRH+V DK+QVRT G D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ + C C S + P+LE+ P W +A + C LC ++ + V VP V R+F+ EL MN+KV+L V
Sbjct: 1 MHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRI-VMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHRSY---SECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKR--IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKE--ELIGTMEQIFMNVAIFEDEVFAG-----VTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDP-YYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAHVCVKCGSLL----SPLLEKPPPSW-----SAMRNRKYNCTLCSR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 924
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Match: POLR1B (RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454]) HSP 1 Score: 424.476 bits (1090), Expect = 4.885e-131 Identity = 239/570 (41.93%), Postives = 335/570 (58.77%), Query Frame = 3
Query: 1689 VPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV---IGCGN-KVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
+P E++ ++ + +PG+++FT RL+RPV N+ G+ E IGT EQ +++++ +G THQEL S+ S A F P+ ++N SPRN+YQCQM KQ+MG+ + + RSDNKLY PQ PL R YD ++M P+G N IVA+ SYT YDMEDAM++N S ERG ++YK IDL+ + D S+ I G+ +V LD DGLP IGA+L G Y+ + T + V YK + V NI +D G+ +CI ++ RN IGDKF+SRHGQKG+ S D+P +E G+VPD LFNPH PSRMT+GM+IE +AGK AAL D+T F + + +E + L++ Y+ +G ER Y G G ++++I +GVVYYQRLRH+V DK+QVRT G D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ + C C S + P+LE+ P + +A + C LC ++ + V VP V R+F+ EL MN+KV+L V
Sbjct: 406 IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKE--ELIGTMEQIFMNVAIFEDEVFAG-----VTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDP-YYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAHVCVKCGSLL----SPLLEKPP---PSWSAMRNRKYNCTLCSR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 952 HSP 2 Score: 198.364 bits (503), Expect = 2.674e-51 Identity = 118/361 (32.69%), Postives = 191/361 (52.91%), Query Frame = 3
Query: 6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTL 1076
+K +Q+ TR +++SFN + G+ ++ + P EF ERI I + +I P K +I N+YP ECR TY GK+ + +N + I + +G +PIM++S LC+L L + LI+HHEE +E+GGYFI+ G + ++R L+ RRNFP+ +P K G T + + CVR++ + + L + +N L K+ F +PL +KAL + S ++FQ+ K KED S + + E +T L YLG FR L +P W N +A ++ I I++K EK+ ++ +M KL + +C +++ D+L QE+LTPG LF + +L
Sbjct: 31 QKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAF-KDERISFTILDAVISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRI-VMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKGSL 389
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Celegans
Match: rpoa-2 (DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q27493]) HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0 Identity = 399/1151 (34.67%), Postives = 617/1151 (53.61%), Query Frame = 3
Query: 24 DFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSI-----DNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQF-KPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAK--EDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFL--KMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKD--SKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQ-FICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPEL-------LVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVT-HQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGN--KVFDDLDWDGLPPIGARLIPGKSNM-----YAQYSSQTEQVKVTKYKESQVGY--VINISRNG-SDYGAT---ICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYY--RPVLEQVPWHNQTDNA-KHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
D ++DSF+ + G + + + +F L G+ + + + + KP +T + P ECR+ LTY G + + + + +N S + I +G +PIM+RS CHL G+S +EL+ EE E GGYFIV G++ ++R L+ RRNFP+ K ++ G + +R V+++ T + L + D L LQ ++ F +PL I+KAL +K+ + F + + + F +L M+ +E + + + +GS+FR + ++ W +LEAGR I E + I++ EK+ + M KL + V +C E+ D FQE G + + R + N + V R ++ S+ + + + I M Y L+TG+L ++Q +G ++ + IN RF+++FRA HRGAFF++M+++ +R+L PE+WGF+CPVHTPDG PCGLLNH + + + + + SL L + M ++ + A + V++NG+ LGY+ A ++R KV D + LV R+T+I KNI Q+PGIYI +++GRL+RPV N+ +E+IGTFEQ YL + + +++ VT HQEL ++SF P+ ++N SPRN+YQCQM KQ+MG ++ R+DNK+Y PQ P+ + + Y+++ M + PLG N VA+ SYT YDMEDAM IN S +RG + K I+L +R R I N + + DGLP IPG+ Y ++ +T + K+ ++ Y ++ I G D GA I ++ERN IGDKF+SRHGQKG+NS LP SE G+VPD +FNPH PSRMT+GMMIE +AGK AA ++ D++ F + + + + L Y+ +G E FY G GR M+ +I G+VYYQRLRH++ DK+QVR G ID IT QPVKGRK GGGIR GEMERD +++HG +F LQDR+++C SD+ + C C S + R + + D + + RC+ C+ D + + ++VP V R+ EL MNVK++L +
Sbjct: 4 DIASYHVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQ---CQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSL---LAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDI--KNIQ---TQYPGIYILSDAGRLIRPVRNLAMD--AVEHIGTFEQVYLSV------VLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERER---KTIFYRNPREEIKTVGPDGLP------IPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLLNC-SDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQRCRTCDKD-------DQVFLLQVPRVFRYLTAELAAMNVKIKLGI 1118
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Celegans
Match: rpc-2 (DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q27492]) HSP 1 Score: 343.199 bits (879), Expect = 5.857e-100 Identity = 301/1137 (26.47%), Postives = 507/1137 (44.59%), Query Frame = 3
Query: 201 IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV------GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFS-IVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMP---IWLTNLEAGRRFID-------EYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNF---QEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRI-MTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIK-SFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVP-----RTTEIICKNISIT-AAQFPGIYIFTNSGRLLRPVYNIMFGEPVI----------------EYIGTFEQTYLDISCQGGNTMS--GGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCG------NKVF--DDLDWDGLPPIGARLIP-------------GKSNMYAQYSSQTEQV--KVTKYKESQVGY----------VINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
I P ECR ++TY + + + T N +G +PIM+RS+ C L L+ EEL + E + GGYF+VKG++ ++ Q +N +V +++ T + Y+ T + K R N D +P+ +I KA+ +S ++ ++ S + L N ++Q V+ + KF F +P + + +D +IA +++ K + +M +L + + + D +F + + GSL +F + + + R + K P+ +IVK +D I N + +STG+ +K+ R+ +T ++ +I+ R F K S R L P WG +CP TP+G CGL+ + + ++ SD+ L L V +L+ + S +K + + LNG L+G D PE +V R + ++ + +S++ + ++I ++ GRL RP + G P++ +++ YLD++ ++ G + TH E+ ++ AG PY ++N SPRN YQC M KQ+MG Y+ + R D+ +Y PQ PL +SKT + N +K P G N I+A+ SY+ YD+EDA+V+N SL+RG GRC +YKH + + ++G +F +LD +G+ GAR++P G+S A S+ T + + YK+ + Y V+ + + ++ R ++GDKFSSRHGQKGV L Q D+P ++ G+VPD + NPH PSRMTVG ++E ++GK ++ TAF Q D+ EE L + Y+ G + G G+ + + I G +YYQ+L+H+V DK R G +TRQP +GR GG+RLGEMERD L+++GA+ L +R++ +SD+ V C+ C G+ C+ C S+++M +++P + EL +MN+ +L +A
Sbjct: 100 ITPQECRLRDMTYSAPISVDIEYTRGNQRVFKKDLIIGRMPIMLRSSKCILRDLAEEELARVQECPYDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNSSKELQCEVLSSTSERKSKTYV-------TMKKGKYSVRHNQLTD----------DVPVSIIFKAMGVESDFDIVSTIGHEEKYVSAFAQTLEESINAGVYTQQQALAYVTS-KVKARKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRL---IQTELGENGLDDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKRIADNALMKTMAAPL-DIVKHMRQD--MITNTIVNAMSTGNWI------IKRFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLA---LISHITTDSDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIGTAVD------------------PERVVKAVRDLRRSGLLSEFVSVSRSLTNRSVFISSDGGRLCRPYIIVKNGTPMLTQAHVQELKEGKMIFEDFVDDGIVEYLDVNEMNDALIAVYGREIGPETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTFDRLLGPALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESGPGASASANTIGIAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVVNGTYHYGTAFGGDQVKDVCEE----LAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLM-VSSDEFKVDVCTGCGVI-----------------------GSKGWCQKCR-------SSKSMANIKIPYACKLLFQELQSMNIVPRLDLA 1150
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Celegans
Match: rpc-2 (DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q27492]) HSP 1 Score: 343.199 bits (879), Expect = 5.857e-100 Identity = 301/1137 (26.47%), Postives = 507/1137 (44.59%), Query Frame = 3
Query: 201 IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV------GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFS-IVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMP---IWLTNLEAGRRFID-------EYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNF---QEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRI-MTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIK-SFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVP-----RTTEIICKNISIT-AAQFPGIYIFTNSGRLLRPVYNIMFGEPVI----------------EYIGTFEQTYLDISCQGGNTMS--GGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCG------NKVF--DDLDWDGLPPIGARLIP-------------GKSNMYAQYSSQTEQV--KVTKYKESQVGY----------VINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
I P ECR ++TY + + + T N +G +PIM+RS+ C L L+ EEL + E + GGYF+VKG++ ++ Q +N +V +++ T + Y+ T + K R N D +P+ +I KA+ +S ++ ++ S + L N ++Q V+ + KF F +P + + +D +IA +++ K + +M +L + + + D +F + + GSL +F + + + R + K P+ +IVK +D I N + +STG+ +K+ R+ +T ++ +I+ R F K S R L P WG +CP TP+G CGL+ + + ++ SD+ L L V +L+ + S +K + + LNG L+G D PE +V R + ++ + +S++ + ++I ++ GRL RP + G P++ +++ YLD++ ++ G + TH E+ ++ AG PY ++N SPRN YQC M KQ+MG Y+ + R D+ +Y PQ PL +SKT + N +K P G N I+A+ SY+ YD+EDA+V+N SL+RG GRC +YKH + + ++G +F +LD +G+ GAR++P G+S A S+ T + + YK+ + Y V+ + + ++ R ++GDKFSSRHGQKGV L Q D+P ++ G+VPD + NPH PSRMTVG ++E ++GK ++ TAF Q D+ EE L + Y+ G + G G+ + + I G +YYQ+L+H+V DK R G +TRQP +GR GG+RLGEMERD L+++GA+ L +R++ +SD+ V C+ C G+ C+ C S+++M +++P + EL +MN+ +L +A
Sbjct: 100 ITPQECRLRDMTYSAPISVDIEYTRGNQRVFKKDLIIGRMPIMLRSSKCILRDLAEEELARVQECPYDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNSSKELQCEVLSSTSERKSKTYV-------TMKKGKYSVRHNQLTD----------DVPVSIIFKAMGVESDFDIVSTIGHEEKYVSAFAQTLEESINAGVYTQQQALAYVTS-KVKARKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRL---IQTELGENGLDDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKRIADNALMKTMAAPL-DIVKHMRQD--MITNTIVNAMSTGNWI------IKRFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLA---LISHITTDSDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIGTAVD------------------PERVVKAVRDLRRSGLLSEFVSVSRSLTNRSVFISSDGGRLCRPYIIVKNGTPMLTQAHVQELKEGKMIFEDFVDDGIVEYLDVNEMNDALIAVYGREIGPETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTFDRLLGPALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESGPGASASANTIGIAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVVNGTYHYGTAFGGDQVKDVCEE----LAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLM-VSSDEFKVDVCTGCGVI-----------------------GSKGWCQKCR-------SSKSMANIKIPYACKLLFQELQSMNIVPRLDLA 1150
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Celegans
Match: rpb-2 (DNA-directed RNA polymerase II subunit RPB2 [Source:UniProtKB/Swiss-Prot;Acc:Q10578]) HSP 1 Score: 303.908 bits (777), Expect = 5.223e-86 Identity = 237/845 (28.05%), Postives = 394/845 (46.63%), Query Frame = 3
Query: 1008 DTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFI--DMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV-----------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPL--TRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVI---------GCGNKVFDDLDWDGLPPIGARL-----IPGKS--------NMYAQYSSQTEQVKVTKYKESQVGYV----INISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAP 3362
D + + + G L +FR N L + + +++KN + + VK+S I + Y L+TG+ G K + ++ +N + A R I + K + R+L WG VCP TP+G GL+ + ++ + + + LE + +++ E++ + AD ++ + +NG +G R + ++ + R +II +S + + I I+T++GR+ RP+ ++ + G V+E I + E+ I+ + SGG D TH E+ + A P+ ++N SPRN YQ M KQ+MG + R D + PQ PL TRS Y FN + P G N IVAI SY+ Y+ ED++++N ++++RG+ R Y+ Y D + +E +I G + ++D LD DG+ G R+ I GK+ ++ A ++ T + S+ G V ++++ +G+ + I ++ R IGDKF+SRHGQKG + + D+P + +G+ PD + NPH++PSRMT+G +IE + GKL+A + D+T F + V++ L Y Y G E Y+G+ G+ + ++I G YYQRL+H+V+DK R G I + RQP++GR GG+R GEMERD +SHGAT L++R+ + SD V C+NC + + R NS+ CK C N + S VR+P + EL +M++ +L V P
Sbjct: 393 DHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDFALDVCVKTS-----TITRGLTYSLATGNWGDQK----KAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSP-SAIADATK---IFVNGAWVGI--HREPDQLMTTLKKLR----------RQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEETSMIAMMPEDLRSGGYCDTH-THCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFN--ELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYR-DNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKF-VKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEV-SDPYHVYVCNNCGLIVVANLRT-----------------NSFECKACRNKTQVSA-------VRIPYACKLLFQELMSMSIAPRLMVKP 1182 HSP 2 Score: 52.7582 bits (125), Expect = 1.693e-6 Identity = 42/155 (27.10%), Postives = 74/155 (47.74%), Query Frame = 3
Query: 27 FTRDYIDSFNAFLKPGIRNILKHLKPTEFE-----LGTGERXXXXXXXXXXQ----KPKCSIDNTRNI--YPWECRRMNLTYEGK--VIMTMTLTINNSTPETITETV--GTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVML 446
R +DSF+ F++ ++ I++ P E + LGT Q KP + + P E R NLTY V +T +T ++S E + + V G +P+M+RS+ C L ++ +L + +E + GGYF++ G++ +L
Sbjct: 47 LVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVL 201
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
Match: RpI135 (gene:FBgn0003278 transcript:FBtr0078054) HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0 Identity = 383/1134 (33.77%), Postives = 608/1134 (53.62%), Query Frame = 3
Query: 12 RQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSID----NTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPV-VQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKE-DFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFR-EFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEI----ICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGS-----DYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
R + + ++DSF+ L G+ N KH+ P + GE+I + +E+I I KPK D TR IYP + R+++++Y G + + ++N I +G +PIM+RS C+L + EE++KH E D E GG F+++GN+ ++R L+ TRRN P+ V+ + G + + ++ VR+DE++ + + +N K+ +P+ +I+K L + + E++ + E D V + M + + T+ C ++G+ FR F ++P W + + + E + I++ Y +K++LI+ M+ KL K E+ D+ QE+L PG L+Q+ + ++++ V R ++ ++ ++ + + + + L+TG++ T G+ QN+GL IM +NIN R++++FRA HRG++F M+++ R+LLP++WGF+CPVHTPDGTPCGLLNH ++ + + + +M L+ + +K V L+GK LG+I+ A++ + +RY K+F +P+ EI KN QFPG+YI T R++RPV+N+ + +EYIGT EQ Y++I+ TH EL+ S A P +YN SPRN+YQCQM KQ+MG + ++ NKLY P PL R YD + +G N IVA+ SYT YDMEDAM+IN + ERG +IYK LT D+ + ++ LD DGLP G++L G S +Y + + KV K E + V +I + GS I +++ R IGDKF+SR GQKG+ S K DLP +E G++PD +FNPH PSRMT+ MMIE +AGK AA+ D+T F+ S+ ++ + L + Y+ +G ER Y G GR M ++I GVV+YQRLRH+V DK+QVR+ G ++ T QP+KGRK GGG+R GEMERD L+SHGA F LQDR+ NSDK C C S + L+++ N+T C+LC + N ++ + +P ++ + EL+++N+ + +
Sbjct: 30 RHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLRE--VQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLSNRRYLGEK--LYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGT----LPQMMEIGFIPFKKN-----GQFPGLYIATGPARMMRPVWNLKWKR--VEYIGTLEQLYMEIAIDAKEMYPD-----FTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKF--LTLDKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYG-SPLYCYFDGEVATYKVVKMDEKEDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFH-NSDKTHTLVCHKCGSILAP-----LQRIVKRNETGGLSSQPD-TCRLCGD-------NSSVSMIEIPFSFKYLVTELSSVNINARFKL 1126
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
Match: RpIII128 (gene:FBgn0004463 transcript:FBtr0087977) HSP 1 Score: 360.147 bits (923), Expect = 4.987e-106 Identity = 320/1170 (27.35%), Postives = 522/1170 (44.62%), Query Frame = 3
Query: 15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIY----PWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTR-----ERQFTTNVSCLEYLGSKF--REFLKMPIWLTNLEAGRRFIDEYIA-INVKDYREKYELILV--MVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSK--RILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFA-DKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEY---------IGTFEQ-------TYLDISCQGGNTMSGGDSDVS--VTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIG-----CGNKVF---DDLDWDGLPPIGARL----------IPGKSNMYAQYSSQTEQVKVT----KYKESQVGYV--INISRNG-SDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNV 3338
Q++ + +IDSFN F+ I+ I+K E + +G ++ + ++ K ID+ NI P ECR + TY + + + T + +G +P+M+R + C L G S EL K +E + GGYF+V+G + ++ L+Q + ++ + + V + + + R + K + + N+ D IP+ VI KAL S +E S++ + + N+F + T LEY+GSK + F + EA + +A + V ++ + + I V MV ++ + DK + D + + GSL +F + ++ +K KN I ++ + F K R L S S G T+ K +T ++ +I+ R F K S R L P WG +CP TP+G CGL+ + ++ T + V ++ ++ + V +NG +LG + + ++RY + R + + S T IYI T+ GRL RP + P+++ I F+ YLD++ + + ++ + + TH E+ ++ AG PY ++N SPRN YQC M KQ+MG Y+ + R D+ +Y + P P+ +SKT + N K P G N VA+ SY+ YD+EDA+++N S++RG GRC +YK+ + + + ++G NKV D LD DG+ G ++ +P ++M Q+ QV T YK + Y+ + +S N D+ I ++ R +IGDKFSSRHGQKGV L ++ D+P ++ GI PD + NPH PSRMTVG +E + GK L K TAF S VE+ A L + ++ G + FY G G +++ I G VYYQ+L+H+V+DK R G +TRQP +GR GG+RLGEMERD L+S+GA+ + +R++ +SD V C C + SW C C+ S+ N+ ++ +P + ELT+MNV
Sbjct: 43 QVKGLVKQHIDSFNHFINVDIKKIVK---ANEL-VTSGADPLFYLKYLDVRVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVI--LIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTD----------DIPIVVIFKALGVVS----------DQEIQSLIGIDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFE----DLFKRMNWELKTIADKN----IPKVKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFKMERAG--VTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVA---FNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNH--KHLVRNLRYMR-------RKGRMGSYVSVHTSYTQR---CIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNP-LQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSK-VEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLM-ISSDAFEVDVCRTCGRMAYC----------------------SW-CHFCQ-------SSANVSKISMPYACKLLFQELTSMNV 1128
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
Match: RpII140 (gene:FBgn0262955 transcript:FBtr0082892) HSP 1 Score: 315.849 bits (808), Expect = 4.174e-90 Identity = 303/1227 (24.69%), Postives = 531/1227 (43.28%), Query Frame = 3
Query: 27 FTRDYIDSFNAFLKPGIRNILKHLKPTEF---------ELGTGERXXXXXXXXXXQKP-KCSIDNTRN-IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET-----VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETT--SEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQN--KSYL--EMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAIN-----------VKDYREKY-ELILVMVLKLHSFVNDKCCQESTDTLNF-----------------------QEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVP------RTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSD--VSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDE--------SVIGCGNKVFDDLDWDGLPPIGARL-----IPGKSNMYAQYSSQ--------TEQVKVTKYKESQVGYVINISRNGSDYGATIC---IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
R +DSF+ F++ ++ I++ E E+ T R + E I + KP D + + + P E R NLTY + + +T T N + + +G IPIM+RS C L L+ +L + +E + GGYFI+ G++ +L + Q +K+ T+ Y+ ++D + +EI+ ++ P L + ++ + QN KS + + P K++ I+ V R F + LE++ F + M + +L+ ++ +A+N KD R KY + IL + H V+D C + L + + + G L +FR N + V + F+ + + ++ +K++ I + + Y L+TG+ G + G+ + + + F +++ R + D K + R+L WG +CP TP+G GL+ + ++ + + S + LE + +++ E+ + AD ++ + +NG +G + DPE L+ R +II +S I + I I+T++GR+ RP+ + ++ V+EYI T E+ + I+ + D + TH E+ + A P+ ++N SPRN YQ M KQ+MG + R D + P PL +++ + ++ P G N IVAI YT Y+ ED++++N +++ERG R Y+ Y G +E + G N +D LD DG+ G R+ + GK+ + + +++ T + S+ G V + + G C ++ R IGDKF+SRHGQKG ++ + D+ + +G+ PD + NPH+IPSRMT+G +IE + GKL + + D+T F + V++ L+ Y Y G E Y+G+ GR +++++ +G YYQRL+H+V+DK R G + + RQP++GR GG+R GEMERD +SHGA L++R+ + SD V C+ C + R N++ CK C+N + S +VR+P + EL +MN+ +L V
Sbjct: 40 LVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVL-----------IAQ----EKMATN----TVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVN---------MMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVF---------RALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNI-----ITDGLRYSLATGNWGD-QKKAHQARAGVSQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP-SAIADATK---IFVNGCWVG------------------IHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEV-SDPYRVHICNFCGLIAIANLR-----------------NNTFECKGCKNKTQIS-------QVRLPYAAKLLFQELMSMNIAPRLMV 1175
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
Match: RpII140 (gene:FBgn0262955 transcript:FBtr0344600) HSP 1 Score: 315.849 bits (808), Expect = 4.174e-90 Identity = 303/1227 (24.69%), Postives = 531/1227 (43.28%), Query Frame = 3
Query: 27 FTRDYIDSFNAFLKPGIRNILKHLKPTEF---------ELGTGERXXXXXXXXXXQKP-KCSIDNTRN-IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET-----VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETT--SEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQN--KSYL--EMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAIN-----------VKDYREKY-ELILVMVLKLHSFVNDKCCQESTDTLNF-----------------------QEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVP------RTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSD--VSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDE--------SVIGCGNKVFDDLDWDGLPPIGARL-----IPGKSNMYAQYSSQ--------TEQVKVTKYKESQVGYVINISRNGSDYGATIC---IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
R +DSF+ F++ ++ I++ E E+ T R + E I + KP D + + + P E R NLTY + + +T T N + + +G IPIM+RS C L L+ +L + +E + GGYFI+ G++ +L + Q +K+ T+ Y+ ++D + +EI+ ++ P L + ++ + QN KS + + P K++ I+ V R F + LE++ F + M + +L+ ++ +A+N KD R KY + IL + H V+D C + L + + + G L +FR N + V + F+ + + ++ +K++ I + + Y L+TG+ G + G+ + + + F +++ R + D K + R+L WG +CP TP+G GL+ + ++ + + S + LE + +++ E+ + AD ++ + +NG +G + DPE L+ R +II +S I + I I+T++GR+ RP+ + ++ V+EYI T E+ + I+ + D + TH E+ + A P+ ++N SPRN YQ M KQ+MG + R D + P PL +++ + ++ P G N IVAI YT Y+ ED++++N +++ERG R Y+ Y G +E + G N +D LD DG+ G R+ + GK+ + + +++ T + S+ G V + + G C ++ R IGDKF+SRHGQKG ++ + D+ + +G+ PD + NPH+IPSRMT+G +IE + GKL + + D+T F + V++ L+ Y Y G E Y+G+ GR +++++ +G YYQRL+H+V+DK R G + + RQP++GR GG+R GEMERD +SHGA L++R+ + SD V C+ C + R N++ CK C+N + S +VR+P + EL +MN+ +L V
Sbjct: 40 LVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVL-----------IAQ----EKMATN----TVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVN---------MMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVF---------RALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNI-----ITDGLRYSLATGNWGD-QKKAHQARAGVSQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP-SAIADATK---IFVNGCWVG------------------IHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEV-SDPYRVHICNFCGLIAIANLR-----------------NNTFECKGCKNKTQIS-------QVRLPYAAKLLFQELMSMNIAPRLMV 1175
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Match: polr1b (RNA polymerase I subunit B [Source:ZFIN;Acc:ZDB-GENE-040426-1598]) HSP 1 Score: 715.687 bits (1846), Expect = 0.000e+0 Identity = 430/1141 (37.69%), Postives = 648/1141 (56.79%), Query Frame = 3
Query: 18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCS---IDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFS-----IVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKP---IKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKV--TKYKESQVGYVINISRNGSDYG--ATICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVP--WHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
+Q+ + +I+SF+ + G+ +++ + P EF L G+RI + II P S I ++P ECR TY K++ ++ ++N I +++G +PIM++S LC+LHGLS +EL++HHEE +E+GGYFIV G + ++R L+ RRN+P+ +P K G T + +RCV+++ T + L + DN + K+ F +PL +KAL + S +++Q+ K +ED S + E+L ++ ++ T T + L YLG +FR L +P W T+ + +DE + I++K EK+ ++ +M KL SF +C +E+ D+ F E+LTPG L+ + + +L +V K+ + K + + + F + YLL+TG+L T G+ QN+GL ++ D +NF R++++FR HRGA F M+++T+R+LLPESWGF+CPVHTPDG PCGL+NH + + + A + L L + + N ++++D C V+L+G ++G++ A +R KV + + VP TEI+ + A+ +PG+Y+FT R++R V N+ G+ E IG FEQ YL++ D THQEL S+ S A F P+ ++N SPRN+YQCQMSKQ+MG+ +S +YRSDNKLY PQ PL R YD +++ P+G N IVA+ SYT YDMEDAM++N +S ERG ++YK +IDL+ D V G KV LD DGLP IG+ L G Y S T Q V KY+ES V I + N + G IC+ ++ RN IGDKF+SRHGQKG+ S D+P +E G+ PD LFNPH PSRMT+GM+IE +AGK A+L D+T F S+ +E + L++ Y+ +G ER Y G G ++++I +GVVYYQRLRH+V DK+QVRT G D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ + + C +C S + P+LE+ P W +A C LC ++++ V VP V ++F+ EL MN+K++L V
Sbjct: 34 VQELVKAHIESFDQAVTDGLCRVVEAIPPMEF-LYKGDRISLSFVEAIIHTPSVSKGGISRDLRVFPAECRGRRCTYRAKLVADVSWSVNGVPKGIIKQSLGQMPIMVKSKLCNLHGLSPKELLEHHEEAEEMGGYFIVNGIEKVIRLLIMPRRNYPIAVSRPKFKSRGQGYTQYAISMRCVKEEHTAINMNLHYLDNGTVMVNFIYRKELFFLPLGFALKALVDYSDYQIYQELIKGREDNSFYKSCVSEMLRIVMDQGCT------TKIKVLNYLGERFRVKLNLPEWFTHEQCAHFLLDECLCIHLKTDVEKFYMLCLMTRKLFSFAKQECMEENPDSPMFHEVLTPGQLYLMFLKEKMEGWLVSV----KLALEKKPQRVGGLTPDSMTKLFNMGTDLTKAFEYLLATGNLMSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTTVRKLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIVAPVYPTSTLPGLLCSLGVNAADGNPGQAYSD-----CYPVILDGAMIGWVEKEVAPSVIESLRRFKVLGEKK--VPPWTEIVLVPQTGKASLYPGLYLFTTPCRMVRTVRNLSLGKQ--ELIGIFEQVYLNV-----GIFEKEIEDGVTTHQELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEIIDLSEKVKGDDSIVFGVKPGDPKVMGKLDADGLPFIGSVLKYGDP-FYGYISLNTGQSHVYFYKYQESCVVDNIKVCSNETGTGRFKRICVTSRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGLCHDATPFTFSEENSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAQVCMDCGSLL----SPLLEKPPPNW-----SATRHRKTICLLCNK-------SDSIETVSVPYVFKYFVAELAAMNIKIKLDV 1131
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Match: polr1b (RNA polymerase I subunit B [Source:ZFIN;Acc:ZDB-GENE-040426-1598]) HSP 1 Score: 715.687 bits (1846), Expect = 0.000e+0 Identity = 430/1141 (37.69%), Postives = 648/1141 (56.79%), Query Frame = 3
Query: 18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCS---IDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFS-----IVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKP---IKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKV--TKYKESQVGYVINISRNGSDYG--ATICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVP--WHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
+Q+ + +I+SF+ + G+ +++ + P EF L G+RI + II P S I ++P ECR TY K++ ++ ++N I +++G +PIM++S LC+LHGLS +EL++HHEE +E+GGYFIV G + ++R L+ RRN+P+ +P K G T + +RCV+++ T + L + DN + K+ F +PL +KAL + S +++Q+ K +ED S + E+L ++ ++ T T + L YLG +FR L +P W T+ + +DE + I++K EK+ ++ +M KL SF +C +E+ D+ F E+LTPG L+ + + +L +V K+ + K + + + F + YLL+TG+L T G+ QN+GL ++ D +NF R++++FR HRGA F M+++T+R+LLPESWGF+CPVHTPDG PCGL+NH + + + A + L L + + N ++++D C V+L+G ++G++ A +R KV + + VP TEI+ + A+ +PG+Y+FT R++R V N+ G+ E IG FEQ YL++ D THQEL S+ S A F P+ ++N SPRN+YQCQMSKQ+MG+ +S +YRSDNKLY PQ PL R YD +++ P+G N IVA+ SYT YDMEDAM++N +S ERG ++YK +IDL+ D V G KV LD DGLP IG+ L G Y S T Q V KY+ES V I + N + G IC+ ++ RN IGDKF+SRHGQKG+ S D+P +E G+ PD LFNPH PSRMT+GM+IE +AGK A+L D+T F S+ +E + L++ Y+ +G ER Y G G ++++I +GVVYYQRLRH+V DK+QVRT G D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ + + C +C S + P+LE+ P W +A C LC ++++ V VP V ++F+ EL MN+K++L V
Sbjct: 34 VQELVKAHIESFDQAVTDGLCRVVEAIPPMEF-LYKGDRISLSFVEAIIHTPSVSKGGISRDLRVFPAECRGRRCTYRAKLVADVSWSVNGVPKGIIKQSLGQMPIMVKSKLCNLHGLSPKELLEHHEEAEEMGGYFIVNGIEKVIRLLIMPRRNYPIAVSRPKFKSRGQGYTQYAISMRCVKEEHTAINMNLHYLDNGTVMVNFIYRKELFFLPLGFALKALVDYSDYQIYQELIKGREDNSFYKSCVSEMLRIVMDQGCT------TKIKVLNYLGERFRVKLNLPEWFTHEQCAHFLLDECLCIHLKTDVEKFYMLCLMTRKLFSFAKQECMEENPDSPMFHEVLTPGQLYLMFLKEKMEGWLVSV----KLALEKKPQRVGGLTPDSMTKLFNMGTDLTKAFEYLLATGNLMSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTTVRKLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIVAPVYPTSTLPGLLCSLGVNAADGNPGQAYSD-----CYPVILDGAMIGWVEKEVAPSVIESLRRFKVLGEKK--VPPWTEIVLVPQTGKASLYPGLYLFTTPCRMVRTVRNLSLGKQ--ELIGIFEQVYLNV-----GIFEKEIEDGVTTHQELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEIIDLSEKVKGDDSIVFGVKPGDPKVMGKLDADGLPFIGSVLKYGDP-FYGYISLNTGQSHVYFYKYQESCVVDNIKVCSNETGTGRFKRICVTSRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGLCHDATPFTFSEENSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAQVCMDCGSLL----SPLLEKPPPNW-----SATRHRKTICLLCNK-------SDSIETVSVPYVFKYFVAELAAMNIKIKLDV 1131
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Match: polr3b (polymerase (RNA) III (DNA directed) polypeptide B [Source:ZFIN;Acc:ZDB-GENE-030131-2887]) HSP 1 Score: 359.762 bits (922), Expect = 7.011e-106 Identity = 324/1182 (27.41%), Postives = 522/1182 (44.16%), Query Frame = 3
Query: 15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLT------INNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIW----LTNLEAGRRFIDEYIAINVK----DYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQI--KSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPV-----IEYIG----TFEQ-------TYLDISCQGGNTMSGGDSDVS--VTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDD-----------LDWDGLPPIGARL----------IPGKSNMYAQYSSQTEQVKVTKYKESQVGY---------VINISRNGSD-YGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
+++ + +IDSFN F+ I+ I+K + + +K + + + + S + TR + P ECR ++TY + + + T I N+ P +G +PIM+RS+ C L G + E K +E + GGYFIVKG + ++ Q +N +V VG T + + R + + + + + NT + P+ +I KA+ +S E+ Q E+ + + ++ Q T L Y+G+K R + +W T +E R + I +V ++R K + VMV ++ D + D + + G L +F + + + + + K ++VK +D +I N M +STG+ +Q +T ++ FI+ R F K S R L P WG +CP TP+G CGL+ + ++ T + ++ V ++N + + + + F+ V LNG +LG I D + + + F E + + ++T +YI ++ GRL RP + G+P IE + TFE YLD++ + ++ + +S TH E+ ++ AG PY ++N SPRN YQC M KQ+MG Y+ R R D +Y PQ P+ ++KT + + +K P G N VA+ SY+ YD+EDA+V+N SL+RG GRC +YK+ L + + V+G + D LD DG+ G ++ +P + + S+Q Q +Y+E V Y + IS N D + I ++ R +IGDKFSSRHGQKGV L + D+P + GI PD + NPH PSRMTVG +IE +AGK L + TAF S V++ L Y Y+ G + G G +++ I G VYYQ+L+H+V DK R G +TRQP +GR GG+RLGEMERD L+ +GA+ L +R++ +SD V C C G S C C++ S +R+P + EL +MN+ +L +A
Sbjct: 33 KVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALP------IGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQDRKGTVGASVTS-STHEKKSRTNMIVKQGRFYLKHNTLSE----------DAPIAIIFKAMGVESDQEIVQMI--GTEEHVMAAFAPSLEE---CQKAQIFTQTQALRYIGNKVR---RQRMWGGPKKTKMEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVILAQGDNKVDDR-DYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQF-DVVKHMRQD--QITNGMVNAISTGNWSLKRFKMDRQG-----VTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPI---IKLAFNLGVEDVNLLCGEELSYPTVFL-VFLNGNILGVIRDHQKLVYTFRLMRRAGF---------INEFVSISTNLTDR---CVYISSDGGRLCRPYIIVKNGKPAVKNKHIEELSQGYRTFEDFLHESLVEYLDVNEENDCNIALYEHMISKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMG---PMLDAETRKPIWRHSILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSAQPGQ---PQYREVPVSYKGATDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK-VKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM-ISSDAFEVDVCGQCGLL-----------------------GYSGWCHYCKSSCHVS-------SLRIPYACKLLFQELQSMNIIPRLKLA 1126
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Match: polr3b (polymerase (RNA) III (DNA directed) polypeptide B [Source:ZFIN;Acc:ZDB-GENE-030131-2887]) HSP 1 Score: 359.762 bits (922), Expect = 7.011e-106 Identity = 324/1182 (27.41%), Postives = 522/1182 (44.16%), Query Frame = 3
Query: 15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLT------INNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIW----LTNLEAGRRFIDEYIAINVK----DYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQI--KSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPV-----IEYIG----TFEQ-------TYLDISCQGGNTMSGGDSDVS--VTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDD-----------LDWDGLPPIGARL----------IPGKSNMYAQYSSQTEQVKVTKYKESQVGY---------VINISRNGSD-YGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
+++ + +IDSFN F+ I+ I+K + + +K + + + + S + TR + P ECR ++TY + + + T I N+ P +G +PIM+RS+ C L G + E K +E + GGYFIVKG + ++ Q +N +V VG T + + R + + + + + NT + P+ +I KA+ +S E+ Q E+ + + ++ Q T L Y+G+K R + +W T +E R + I +V ++R K + VMV ++ D + D + + G L +F + + + + + K ++VK +D +I N M +STG+ +Q +T ++ FI+ R F K S R L P WG +CP TP+G CGL+ + ++ T + ++ V ++N + + + + F+ V LNG +LG I D + + + F E + + ++T +YI ++ GRL RP + G+P IE + TFE YLD++ + ++ + +S TH E+ ++ AG PY ++N SPRN YQC M KQ+MG Y+ R R D +Y PQ P+ ++KT + + +K P G N VA+ SY+ YD+EDA+V+N SL+RG GRC +YK+ L + + V+G + D LD DG+ G ++ +P + + S+Q Q +Y+E V Y + IS N D + I ++ R +IGDKFSSRHGQKGV L + D+P + GI PD + NPH PSRMTVG +IE +AGK L + TAF S V++ L Y Y+ G + G G +++ I G VYYQ+L+H+V DK R G +TRQP +GR GG+RLGEMERD L+ +GA+ L +R++ +SD V C C G S C C++ S +R+P + EL +MN+ +L +A
Sbjct: 33 KVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALP------IGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQDRKGTVGASVTS-STHEKKSRTNMIVKQGRFYLKHNTLSE----------DAPIAIIFKAMGVESDQEIVQMI--GTEEHVMAAFAPSLEE---CQKAQIFTQTQALRYIGNKVR---RQRMWGGPKKTKMEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVILAQGDNKVDDR-DYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQF-DVVKHMRQD--QITNGMVNAISTGNWSLKRFKMDRQG-----VTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPI---IKLAFNLGVEDVNLLCGEELSYPTVFL-VFLNGNILGVIRDHQKLVYTFRLMRRAGF---------INEFVSISTNLTDR---CVYISSDGGRLCRPYIIVKNGKPAVKNKHIEELSQGYRTFEDFLHESLVEYLDVNEENDCNIALYEHMISKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMG---PMLDAETRKPIWRHSILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSAQPGQ---PQYREVPVSYKGATDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK-VKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM-ISSDAFEVDVCGQCGLL-----------------------GYSGWCHYCKSSCHVS-------SLRIPYACKLLFQELQSMNIIPRLKLA 1126
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Match: polr2b (polymerase (RNA) II (DNA directed) polypeptide B [Source:ZFIN;Acc:ZDB-GENE-041008-1]) HSP 1 Score: 298.901 bits (764), Expect = 4.261e-84 Identity = 226/827 (27.33%), Postives = 384/827 (46.43%), Query Frame = 3
Query: 1041 GSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSV-THQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYV------------IDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARL-----IPGKSNMYAQYSSQ--------TEQVKVTKYKESQVGYVINISRNGSDYGATIC---IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQL 3350
G L +FR N L + + F+ + + ++ +K+ I + + Y L+TG+ G + + G+ + + + F +++ R + D K + R+L WG VCP TP+G GL+ + ++ + + S + LE + +++ E++ + AD ++ + +NG +G D ++ N +R + R +II +S I + I I+T++GR+ RP+ + + V+EYI T E+ + ++ + G + S TH E+ + A P+ ++N SPRN YQ M KQ+MG + R D + PQ PL +++ + ++ P G N IVAIASYT Y+ ED++++N ++++RG R Y+ Y I P R E+ G + ++D LD DGL G R+ I GK+ + + T++ T + S+ G V + + G C ++ R IGDKF+SRHGQKG ++ + D+P + +GI PD + NPH+IPSRMTVG +IE + GK++A + D+T F + V++ L Y Y G E Y+G+ GR + S+I +G YYQRL+H+V+DK R G + + RQP++GR GG+R GEMERD ++HGA L++R+ + SD V C+ C + R +++ C+ C N + S VR+P + EL +M++ ++
Sbjct: 397 GPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRI-----ISDGLKYSLATGNWGDVK-KAHQARAGVSQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISP-AAIADATK---IFVNGCWVGIHKD--PEQLMNTLRKLR----------RQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTR----ETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEA-SDPYQVHVCNLCGLMAIANTRT-----------------HTYECRGCRNKTQISL-------VRMPYACKLLFQELMSMSIAPRM 1171 HSP 2 Score: 53.9138 bits (128), Expect = 1.384e-6 Identity = 47/156 (30.13%), Postives = 75/156 (48.08%), Query Frame = 3
Query: 27 FTRDYIDSFNAFLKPGIRNILKHLKP----TEFELGTGE-----RXXXXXXXXXXQKP-KCSIDNTRN-IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET-----VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVML 446
R +DSF+ F++ ++ I++ P E + +GE R + E I + KP D + + P E R NLTY + + +T TI E +G IPIM+RS C L GL+ +L + +E + GGYFI+ G++ +L
Sbjct: 39 LVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVL 194
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Match: POLR1B (polymerase (RNA) I polypeptide B [Source:NCBI gene;Acc:100485503]) HSP 1 Score: 723.005 bits (1865), Expect = 0.000e+0 Identity = 433/1135 (38.15%), Postives = 641/1135 (56.48%), Query Frame = 3
Query: 18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQK--PKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQK-VGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIV-EVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPD-RGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYG----ATICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVP--WHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
+QD TR +IDSFN + G+ ++ +KP EF + +++ +I PK SI + IYP ECR TY GK+ ++ ++N I +T+G IPIM++S C+L+ L+ ++L++HHEE+ E+GGYFI+ G + ++R L+ RRNFP+ +P K G T + +RCVRD+ T + L + +N + K+ F IPL +KAL + S ++F + K KE+ S + +T M NV L+YLG +FR +P W T+ +A I + I I++K EK+ ++ +M KL +F D C +E+ D+L +QE++TPG L + + ++L V N+ K + E + F + + YLL+TG+L T G+ Q++GL ++ D +NF R++++FR HRGA F M+++++RRLLPESWGF+CPVHTPDG PCGL+NH + + + + L L + ++ K FAD C VML+G ++G++ A + +R KV E VP TEI+ ++ A+ +PG+++FT R++RPV N+ G+ E +GT EQ +L+++ G+ + G THQE S+ S A F P+ ++N SPRN+YQCQM KQ+MG+ + + RSDNKLY PQ PL R YD + M P+G N IVA+ SYT YDMEDAMV+N +S ERG ++YK +DL+ + D V G +V LD DGLP +GA L G Y + T + V YK + + NI +D G ++C+ ++ RN IGDKF+SRHGQKG+ S + D+P +E G+VPD LFNPH PSRMT+GM+IE +AGK AAL D+T F S+ +E + LR+ Y+ +G E+ Y G G ++++I +GVVYYQRLRH+V DK+QVRT G D +T QPV GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ C C S + P LE+ P W + N KH C++C+ + + V VP V R+F+ EL MN+ V+LSV+
Sbjct: 35 LQDITRAHIDSFNQAMTEGLSLAVQAMKPLEFTYKNDKVALQIVDAVITPPLVPKGSICKEQKIYPAECRGRRSTYRGKLTADVSWSLNGLQKGIIKQTLGHIPIMVKSKFCNLYDLNPKQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKNRGPGYTQYGISLRCVRDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFALKALVDYSDYQIFTELIKGKEENSFYRDCMTQMLRAVVEEGCHSQKNV--LKYLGERFRVKFYLPDWFTDEQAAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEENPDSLMYQEVMTPGQLLLMFLKEKMESWLLGVKVNLDKRAHKYTVDLSTETMMKVFTSTSDLTKTCEYLLATGNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEIVTQTSYNTLLPLLLCSLGMTPVDGTAGKLFAD-----CYPVMLDGAMVGWVEKTIAPGLVSALRNYKV--KHEKNVPPWTEIVLIPMTGKASLYPGLFLFTTPCRMVRPVRNLALGKE--ELLGTLEQVFLNVAVYEGDIVPG-----ETTHQEFFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSDNKLYRLQTPQSPLVRPSMYDYYEMDNYPIGTNAIVAVISYTGYDMEDAMVLNKSSWERGFAHGSVYKTDHVDLSKKLKDGEDNLVFGIKPDDERVKGRLDSDGLPAVGAVLQFGDP-YYGYLNLNTGESFVAYYKSKENCVIDNIKICSNDIGFGKFKSVCVTMRIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALEYFGEMLRAGGYNFYGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSTAHVCIECGSLL----SPFLEKPPPSW-SSIRNRKH----HCEVCDR-------TDTVETVSVPYVFRYFVAELAAMNISVKLSVS 1135
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Match: POLR1B (polymerase (RNA) I polypeptide B [Source:NCBI gene;Acc:100485503]) HSP 1 Score: 722.62 bits (1864), Expect = 0.000e+0 Identity = 433/1135 (38.15%), Postives = 641/1135 (56.48%), Query Frame = 3
Query: 18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQK--PKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQK-VGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIV-EVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPD-RGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYG----ATICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVP--WHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
+QD TR +IDSFN + G+ ++ +KP EF + +++ +I PK SI + IYP ECR TY GK+ ++ ++N I +T+G IPIM++S C+L+ L+ ++L++HHEE+ E+GGYFI+ G + ++R L+ RRNFP+ +P K G T + +RCVRD+ T + L + +N + K+ F IPL +KAL + S ++F + K KE+ S + +T M NV L+YLG +FR +P W T+ +A I + I I++K EK+ ++ +M KL +F D C +E+ D+L +QE++TPG L + + ++L V N+ K + E + F + + YLL+TG+L T G+ Q++GL ++ D +NF R++++FR HRGA F M+++++RRLLPESWGF+CPVHTPDG PCGL+NH + + + + L L + ++ K FAD C VML+G ++G++ A + +R KV E VP TEI+ ++ A+ +PG+++FT R++RPV N+ G+ E +GT EQ +L+++ G+ + G THQE S+ S A F P+ ++N SPRN+YQCQM KQ+MG+ + + RSDNKLY PQ PL R YD + M P+G N IVA+ SYT YDMEDAMV+N +S ERG ++YK +DL+ + D V G +V LD DGLP +GA L G Y + T + V YK + + NI +D G ++C+ ++ RN IGDKF+SRHGQKG+ S + D+P +E G+VPD LFNPH PSRMT+GM+IE +AGK AAL D+T F S+ +E + LR+ Y+ +G E+ Y G G ++++I +GVVYYQRLRH+V DK+QVRT G D +T QPV GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ C C S + P LE+ P W + N KH C++C+ + + V VP V R+F+ EL MN+ V+LSV+
Sbjct: 41 LQDITRAHIDSFNQAMTEGLSLAVQAMKPLEFTYKNDKVALQIVDAVITPPLVPKGSICKEQKIYPAECRGRRSTYRGKLTADVSWSLNGLQKGIIKQTLGHIPIMVKSKFCNLYDLNPKQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKNRGPGYTQYGISLRCVRDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFALKALVDYSDYQIFTELIKGKEENSFYRDCMTQMLRAVVEEGCHSQKNV--LKYLGERFRVKFYLPDWFTDEQAAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEENPDSLMYQEVMTPGQLLLMFLKEKMESWLLGVKVNLDKRAHKYTVDLSTETMMKVFTSTSDLTKTCEYLLATGNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEIVTQTSYNTLLPLLLCSLGMTPVDGTAGKLFAD-----CYPVMLDGAMVGWVEKTIAPGLVSALRNYKV--KHEKNVPPWTEIVLIPMTGKASLYPGLFLFTTPCRMVRPVRNLALGKE--ELLGTLEQVFLNVAVYEGDIVPG-----ETTHQEFFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSDNKLYRLQTPQSPLVRPSMYDYYEMDNYPIGTNAIVAVISYTGYDMEDAMVLNKSSWERGFAHGSVYKTDHVDLSKKLKDGEDNLVFGIKPDDERVKGRLDSDGLPAVGAVLQFGDP-YYGYLNLNTGESFVAYYKSKENCVIDNIKICSNDIGFGKFKSVCVTMRIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALEYFGEMLRAGGYNFYGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSTAHVCIECGSLL----SPFLEKPPPSW-SSIRNRKH----HCEVCDR-------TDTVETVSVPYVFRYFVAELAAMNISVKLSVS 1141
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Match: POLR1B (polymerase (RNA) I polypeptide B [Source:NCBI gene;Acc:100485503]) HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0 Identity = 410/1137 (36.06%), Postives = 606/1137 (53.30%), Query Frame = 3
Query: 18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEEL----IKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQK-VGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIV-EVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPD-RGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYG----ATICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVP--WHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
+QD TR +IDSFN + G+ ++ +KP EF TY+ N+ I + V T P++ + ++C + E + + E+GGYFI+ G + ++R L+ RRNFP+ +P K G T + +RCVRD+ T + L + +N + K+ F IPL +KAL + S ++F + K KE+ S + +T M NV L+YLG +FR +P W T+ +A I + I I++K EK+ ++ +M KL +F D C +E+ D+L +QE++TPG L + + ++L V N+ K + E + F + + YLL+TG+L T G+ Q++GL ++ D +NF R++++FR HRGA F M+++++RRLLPESWGF+CPVHTPDG PCGL+NH + + + + L L + ++ K FAD C VML+G ++G++ A + +R KV E VP TEI+ ++ A+ +PG+++FT R++RPV N+ G+ E +GT EQ +L+++ G+ + G THQE S+ S A F P+ ++N SPRN+YQCQM KQ+MG+ + + RSDNKLY PQ PL R YD + M P+G N IVA+ SYT YDMEDAMV+N +S ERG ++YK +DL+ + D V G +V LD DGLP +GA L G Y + T + V YK + + NI +D G ++C+ ++ RN IGDKF+SRHGQKG+ S + D+P +E G+VPD LFNPH PSRMT+GM+IE +AGK AAL D+T F S+ +E + LR+ Y+ +G E+ Y G G ++++I +GVVYYQRLRH+V DK+QVRT G D +T QPV GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ C C S + P LE+ P W + N KH C++C+ + + V VP V R+F+ EL MN+ V+LSV+
Sbjct: 35 LQDITRAHIDSFNQAMTEGLSLAVQAMKPLEF----------------------------------------TYK-----------NDKVALQIVDAVITPPLVPKGSICKEQKIYPAECRGRRSTYRGKLTEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKNRGPGYTQYGISLRCVRDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFALKALVDYSDYQIFTELIKGKEENSFYRDCMTQMLRAVVEEGCHSQKNV--LKYLGERFRVKFYLPDWFTDEQAAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEENPDSLMYQEVMTPGQLLLMFLKEKMESWLLGVKVNLDKRAHKYTVDLSTETMMKVFTSTSDLTKTCEYLLATGNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEIVTQTSYNTLLPLLLCSLGMTPVDGTAGKLFAD-----CYPVMLDGAMVGWVEKTIAPGLVSALRNYKV--KHEKNVPPWTEIVLIPMTGKASLYPGLFLFTTPCRMVRPVRNLALGKE--ELLGTLEQVFLNVAVYEGDIVPG-----ETTHQEFFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSDNKLYRLQTPQSPLVRPSMYDYYEMDNYPIGTNAIVAVISYTGYDMEDAMVLNKSSWERGFAHGSVYKTDHVDLSKKLKDGEDNLVFGIKPDDERVKGRLDSDGLPAVGAVLQFGDP-YYGYLNLNTGESFVAYYKSKENCVIDNIKICSNDIGFGKFKSVCVTMRIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALEYFGEMLRAGGYNFYGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSTAHVCIECGSLL----SPFLEKPPPSW-SSIRNRKH----HCEVCDR-------TDTVETVSVPYVFRYFVAELAAMNISVKLSVS 1086
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Match: POLR1B (polymerase (RNA) I polypeptide B [Source:NCBI gene;Acc:100485503]) HSP 1 Score: 390.963 bits (1003), Expect = 6.032e-121 Identity = 236/677 (34.86%), Postives = 375/677 (55.39%), Query Frame = 3
Query: 18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQK--PKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQK-VGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIV-EVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQS 2030
+QD TR +IDSFN + G+ ++ +KP EF + +++ +I PK SI + IYP ECR TY GK+ ++ ++N I +T+G IPIM++S C+L+ L+ ++L++HHEE+ E+GGYFI+ G + ++R L+ RRNFP+ +P K G T + +RCVRD+ T + L + +N + K+ F IPL +KAL + S ++F + K KE+ S + +T M NV L+YLG +FR +P W T+ +A I + I I++K EK+ ++ +M KL +F D C +E+ D+L +QE++TPG L + + ++L V N+ K + E + F + + YLL+TG+L T G+ Q++GL ++ D +NF R++++FR HRGA F M+++++RRLLPESWGF+CPVHTPDG PCGL+NH + + + + L L + ++ K FAD C VML+G ++G++ A + +R KV E VP TEI+ ++ A+ +PG+++FT R++RPV N+ G+ E +GT EQ +L+++ G+ + G THQE S+ S A F P+ ++N SPRN+YQCQM K S
Sbjct: 35 LQDITRAHIDSFNQAMTEGLSLAVQAMKPLEFTYKNDKVALQIVDAVITPPLVPKGSICKEQKIYPAECRGRRSTYRGKLTADVSWSLNGLQKGIIKQTLGHIPIMVKSKFCNLYDLNPKQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKNRGPGYTQYGISLRCVRDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFALKALVDYSDYQIFTELIKGKEENSFYRDCMTQMLRAVVEEGCHSQKNV--LKYLGERFRVKFYLPDWFTDEQAAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEENPDSLMYQEVMTPGQLLLMFLKEKMESWLLGVKVNLDKRAHKYTVDLSTETMMKVFTSTSDLTKTCEYLLATGNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEIVTQTSYNTLLPLLLCSLGMTPVDGTAGKLFAD-----CYPVMLDGAMVGWVEKTIAPGLVSALRNYKV--KHEKNVPPWTEIVLIPMTGKASLYPGLFLFTTPCRMVRPVRNLALGKE--ELLGTLEQVFLNVAVYEGDIVPG-----ETTHQEFFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKSS 695
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Match: POLR1B (polymerase (RNA) I polypeptide B [Source:NCBI gene;Acc:100485503]) HSP 1 Score: 383.645 bits (984), Expect = 8.663e-115 Identity = 221/520 (42.50%), Postives = 302/520 (58.08%), Query Frame = 3
Query: 1845 QTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPD-RGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYG----ATICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVP--WHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
+ +L+++ G+ + G THQE S+ S A F P+ ++N SPRN+YQCQM KQ+MG+ + + RSDNKLY PQ PL R YD + M P+G N IVA+ SYT YDMEDAMV+N +S ERG ++YK +DL+ + D V G +V LD DGLP +GA L G Y + T + V YK + + NI +D G ++C+ ++ RN IGDKF+SRHGQKG+ S + D+P +E G+VPD LFNPH PSRMT+GM+IE +AGK AAL D+T F S+ +E + LR+ Y+ +G E+ Y G G ++++I +GVVYYQRLRH+V DK+QVRT G D +T QPV GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ C C S + P LE+ P W + N KH C++C+ + + V VP V R+F+ EL MN+ V+LSV+
Sbjct: 582 KVFLNVAVYEGDIVPG-----ETTHQEFFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSDNKLYRLQTPQSPLVRPSMYDYYEMDNYPIGTNAIVAVISYTGYDMEDAMVLNKSSWERGFAHGSVYKTDHVDLSKKLKDGEDNLVFGIKPDDERVKGRLDSDGLPAVGAVLQFGDP-YYGYLNLNTGESFVAYYKSKENCVIDNIKICSNDIGFGKFKSVCVTMRIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALEYFGEMLRAGGYNFYGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSTAHVCIECGSLL----SPFLEKPPPSW-SSIRNRKH----HCEVCDR-------TDTVETVSVPYVFRYFVAELAAMNISVKLSVS 1078 HSP 2 Score: 313.923 bits (803), Expect = 9.558e-90 Identity = 191/557 (34.29%), Postives = 306/557 (54.94%), Query Frame = 3
Query: 18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQK--PKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQK-VGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIV-EVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVF 1670
+QD TR +IDSFN + G+ ++ +KP EF + +++ +I PK SI + IYP ECR TY GK+ ++ ++N I +T+G IPIM++S C+L+ L+ ++L++HHEE+ E+GGYFI+ G + ++R L+ RRNFP+ +P K G T + +RCVRD+ T + L + +N + K+ F IPL +KAL + S ++F + K KE+ S + +T M NV L+YLG +FR +P W T+ +A I + I I++K EK+ ++ +M KL +F D C +E+ D+L +QE++TPG L + + ++L V N+ K + E + F + + YLL+TG+L T G+ Q++GL ++ D +NF R++++FR HRGA F M+++++RRLLPESWGF+CPVHTPDG PCGL+NH + + + + L L + ++ K FAD C VML+G ++G++ A + +R KVF
Sbjct: 35 LQDITRAHIDSFNQAMTEGLSLAVQAMKPLEFTYKNDKVALQIVDAVITPPLVPKGSICKEQKIYPAECRGRRSTYRGKLTADVSWSLNGLQKGIIKQTLGHIPIMVKSKFCNLYDLNPKQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKNRGPGYTQYGISLRCVRDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFALKALVDYSDYQIFTELIKGKEENSFYRDCMTQMLRAVVEEGCHSQKNV--LKYLGERFRVKFYLPDWFTDEQAAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEENPDSLMYQEVMTPGQLLLMFLKEKMESWLLGVKVNLDKRAHKYTVDLSTETMMKVFTSTSDLTKTCEYLLATGNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEIVTQTSYNTLLPLLLCSLGMTPVDGTAGKLFAD-----CYPVMLDGAMVGWVEKTIAPGLVSALRNYKVF 584
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Match: Polr1b (polymerase (RNA) I polypeptide B [Source:MGI Symbol;Acc:MGI:108014]) HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0 Identity = 429/1143 (37.53%), Postives = 643/1143 (56.26%), Query Frame = 3
Query: 6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKED-----FSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEI----VKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPD-RGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
+K +QD TR ++DSFN G+ + ++ + P EF ERI + I + +I P K +I N+YP ECR TY G++ ++ +N I + +G +PIM++S LC+L+ L LI+HHEE +E+GGYFI+ G + ++R L+ RRNFP+ +P K G T +RCVR++ + + L + +N L K+ F +PL +KAL + S ++FQ+ K KE+ S+ ++L ++ + ++Q L YLG FR L +P W N+EA +++ I I+++ +K+ L+ +M KL + +C ++ D+L QE+L+PG LF + + N+L ++ KI + K + K I + F + P YLL+TG+L T G Q++GL ++ D +NF R++++FR HRGA F M+++T+RRLLPESWGF+CPVHTPDG PCGLLNH + V + +L L + ++ + ++D V+L+G ++G++ A E A+ +R KV E +P E+ ++ + +PG+++FT RL+RPV N+ G E IGT EQ +++++ + + GG S THQEL S+ S A F P+ ++N SPRN+YQCQM KQ+MG+ + + RSDNKLY PQ PL R YD ++M P+G N IVA+ SYT YDMEDAM++N S ERG ++YK IDL+ + D V G +V LD DGLP IGA+L G Y+ + T + V YK + V NI +D G+ ICI ++ RN IGDKF+SRHGQKG+ S D+P +E G++PD LFNPH PSRMT+GM+IE +AGK AAL D+T F + + +E + L++ Y+ +G ER Y G G ++++I +GVVYYQRLRH+V DK+QVRT G D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ + C C S + P+LE+ P + +A + C +C ++ + V VP V R+F+ EL MN+KV+L V
Sbjct: 31 QKAALQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAF-KDERISLTIVDAVISPPSVPKGTICKDLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQV------LNYLGECFRVKLSLPDWYPNVEAAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSI----KIVLDKRAQKANVSINNENLMKIFSMGTELTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDTAPCRPYSDCYP---VLLDGVMVGWVDKDLAPEVADTLRRFKVLR--EKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGRE--ELIGTMEQLFMNVAIFE-DEVFGGIS----THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLEYGDP-YYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAHMCVECGSLL----SPLLEKPP---PSWSAMRNRKYNCTVCGR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Match: Polr1b (polymerase (RNA) I polypeptide B [Source:MGI Symbol;Acc:MGI:108014]) HSP 1 Score: 389.037 bits (998), Expect = 5.127e-120 Identity = 232/687 (33.77%), Postives = 376/687 (54.73%), Query Frame = 3
Query: 6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKED-----FSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEI----VKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQ 2027
+K +QD TR ++DSFN G+ + ++ + P EF ERI + I + +I P K +I N+YP ECR TY G++ ++ +N I + +G +PIM++S LC+L+ L LI+HHEE +E+GGYFI+ G + ++R L+ RRNFP+ +P K G T +RCVR++ + + L + +N L K+ F +PL +KAL + S ++FQ+ K KE+ S+ ++L ++ + ++Q L YLG FR L +P W N+EA +++ I I+++ +K+ L+ +M KL + +C ++ D+L QE+L+PG LF + + N+L ++ KI + K + K I + F + P YLL+TG+L T G Q++GL ++ D +NF R++++FR HRGA F M+++T+RRLLPESWGF+CPVHTPDG PCGLLNH + V + +L L + ++ + ++D V+L+G ++G++ A E A+ +R KV + +P E+ ++ + +PG+++FT RL+RPV N+ G E IGT EQ +++++ + + GG S THQEL S+ S A F P+ ++N SPRN+YQCQM Q
Sbjct: 31 QKAALQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAF-KDERISLTIVDAVISPPSVPKGTICKDLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQV------LNYLGECFRVKLSLPDWYPNVEAAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSI----KIVLDKRAQKANVSINNENLMKIFSMGTELTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDTAPCRPYSDCYP---VLLDGVMVGWVDKDLAPEVADTLRRFKVLREKR--IPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGRE--ELIGTMEQLFMNVAI-FEDEVFGGIS----THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGLQ 694
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Match: Polr3b (polymerase (RNA) III (DNA directed) polypeptide B [Source:MGI Symbol;Acc:MGI:1917678]) HSP 1 Score: 355.91 bits (912), Expect = 2.306e-104 Identity = 323/1185 (27.26%), Postives = 523/1185 (44.14%), Query Frame = 3
Query: 15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLT------INNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKF--STRERQFTTNVSCLEYLGSKFREFLKMPIW-----LTNLEAGRRFIDEYIAINVK----DYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQI--KSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISI-TAAQFPGIYIFTNSGRLLRPVYNIMFGEPVI----------------EYIGTFEQTYLDISCQGGNTMSGGDSDVS--VTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDD-----------LDWDGLPPIGARL----------------IPGKSNMYAQYSSQTEQVKVTKYKESQVGYV--INISRNGSD-YGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
+++ + +IDSFN F+ I+ I+K + + +K + + + + S + TR + P ECR ++TY + + + T I N+ P +G +PIM+RS+ C L G + E K +E + GGYFIVKG + ++ Q +N +V+ VG T + + R + + + + R NT + IP+ +I KA+ +S E+ Q E + F ++ Q T + L+Y+G+K R + +W T +E R + I +V ++R K VMV ++ D + D + + G L +F + + + + + K ++VK +D +I N M +STG+ +Q +T ++ +I+ R F K S R L P WG +CP TP+G CGL+ + ++ T + V ++N + + + + F+ V LNG +LG I D +KK+ L+ R I + +SI T +YI ++ GRL RP + +P + +++ YLD++ + ++ + ++ TH E+ ++ AG PY ++N SPRN YQC M KQ+MG Y+ R R D +Y PQ P+ ++KT + + +K P G N VA+ SY+ YD+EDA+V+N SL+RG GRC +YK+ L + + V+G + D LD DG+ G ++ IP + + Q Q + V +T YK + Y+ + IS N D + + ++ R +IGDKFSSRHGQKGV L + D+P + GI PD + NPH PSRMTVG +IE +AGK L + TAF S V++ L + Y+ G + G G +++ I G VYYQ+L+H+V DK R G +TRQP +GR GG+RLGEMERD L+ +GA+ L +R++ +SD V C C G S C C++ S +R+P + EL +MN+ +L +A
Sbjct: 35 KVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALP------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGAVGASVTS-STHEKKSRTNMAVKQGRFYLRHNTLSE----------DIPIVIIFKAMGVESDQEIVQMI-------GTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVR---RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDR-DYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF-DVVKHMRQD--QITNGMVNAISTGNWSLKRFKMDRQG-----VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNL---GVEDVNLLCGEELSYPNVFL-VFLNGNILGVIRD-----------HKKLVSTFRLM--RRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMG---PMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ-QPQYKDVPIT-YKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK-VKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM-ISSDAFEVDVCGQCGLL-----------------------GYSGWCHYCKSSCHVS-------SLRIPYACKLLFQELQSMNIIPRLKLA 1129
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Match: Polr2b (polymerase (RNA) II (DNA directed) polypeptide B [Source:MGI Symbol;Acc:MGI:2388280]) HSP 1 Score: 294.278 bits (752), Expect = 1.605e-82 Identity = 224/824 (27.18%), Postives = 380/824 (46.12%), Query Frame = 3
Query: 1041 GSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSV-THQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVI---------GCGNKVFDDLDWDGLPPIGARL-----IPGKSNMYAQYSSQTEQVK--------VTKYKESQVGYVINISRNGSDYGATIC---IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQL 3350
G L +FR N L V + F+ + + ++ +K+ I + + Y L+TG+ G + G+ + + + F +++ R + D K + R+L WG VCP TP+G GL+ + ++ + + S + LE + +++ E++ + AD ++ + +NG +G D ++ N +R + R +II +S I + I I+T++GR+ RP+ + + V+EYI T E+ + ++ + + S TH E+ + A P+ ++N SPRN YQ M KQ+MG + R D + PQ PL +++ + ++ P G N IVAIASYT Y+ ED++++N ++++RG R Y+ Y + +G E V G + +++ LD DGL G R+ I GK+ + + E T + S+ G V + + G C ++ R IGDKF+SRHGQKG ++ + D+P + +GI PD + NPH+IPSRMT+G +IE + GK++A + D+T F + V++ L Y Y G E Y+G+ GR + S+I +G YYQRL+H+V+DK R G I + RQP++GR GG+R GEMERD ++HGA L++R+ + SD V C+ C + R +++ C+ C N + S VR+P + EL +M++ ++
Sbjct: 397 GPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRI-----ISDGLKYSLATGNWGD-QKKAHQARAGVSQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISP-AAIADATK---IFVNGCWVGIHKD--PEQLMNTLRKLR----------RQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK-EQESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEA-SDPYQVHVCNLCGIMAIANTRT-----------------HTYECRGCRNKTQISL-------VRMPYACKLLFQELMSMSIAPRM 1171 HSP 2 Score: 56.6102 bits (135), Expect = 2.203e-7 Identity = 46/156 (29.49%), Postives = 77/156 (49.36%), Query Frame = 3
Query: 27 FTRDYIDSFNAFLKPGIRNILKHLKP----TEFELGTGE-----RXXXXXXXXXXQKP-KCSIDNTRN-IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET-----VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVML 446
R +DSF+ F++ ++ I++ P E + +GE R + E I + KP D + + P E R NLTY + + +T T+ E + +G IPIM+RS C L+GL+ +L + +E + GGYFI+ G++ +L
Sbjct: 39 LVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVL 194
BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Match: sp|Q9H9Y6|RPA2_HUMAN (DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens OX=9606 GN=POLR1B PE=1 SV=2) HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0 Identity = 424/1135 (37.36%), Postives = 634/1135 (55.86%), Query Frame = 3
Query: 6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV---IGCGN-KVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
+K +Q+ TR +++SFN + G+ ++ + P EF ERI I + +I P K +I N+YP ECR TY GK+ + +N + I + +G +PIM++S LC+L L + LI+HHEE +E+GGYFI+ G + ++R L+ RRNFP+ +P K G T + + CVR++ + + L + +N L K+ F +PL +KAL + S ++FQ+ K KED S + + E +T L YLG FR L +P W N +A ++ I I++K EK+ ++ +M KL + +C +++ D+L QE+LTPG LF + L +L ++ K S + + F + P YL +TG+L T G+ Q++GL ++ D +NF R++++FR HRGA F M+++T+RRLLPESWGF+CPVHTPDG PCGL+NH + V + +L L + ++ +S+ S+ V+L+G ++G++ A A+ +R+ KV E +P E++ ++ + +PG+++FT RL+RPV N+ G+ E IGT EQ +++++ +G THQEL S+ S A F P+ ++N SPRN+YQCQM KQ+MG+ + + RSDNKLY PQ PL R YD ++M P+G N IVA+ SYT YDMEDAM++N S ERG ++YK IDL+ + D S+ I G+ +V LD DGLP IGA+L G Y+ + T + V YK + V NI +D G+ +CI ++ RN IGDKF+SRHGQKG+ S D+P +E G+VPD LFNPH PSRMT+GM+IE +AGK AAL D+T F + + +E + L++ Y+ +G ER Y G G ++++I +GVVYYQRLRH+V DK+QVRT G D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ + C C S + P+LE+ P + +A + C LC ++ + V VP V R+F+ EL MN+KV+L V
Sbjct: 31 QKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAF-KDERISFTILDAVISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRI-VMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHRSY---SECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLR--EKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKE--ELIGTMEQIFMNVAIFEDEVFAG-----VTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDP-YYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAHVCVKCGSLL----SPLLEKPP---PSWSAMRNRKYNCTLCSR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 1135
BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Match: sp|P70700|RPA2_MOUSE (DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus OX=10090 GN=Polr1b PE=1 SV=2) HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0 Identity = 429/1143 (37.53%), Postives = 643/1143 (56.26%), Query Frame = 3
Query: 6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKED-----FSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEI----VKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPD-RGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
+K +QD TR ++DSFN G+ + ++ + P EF ERI + I + +I P K +I N+YP ECR TY G++ ++ +N I + +G +PIM++S LC+L+ L LI+HHEE +E+GGYFI+ G + ++R L+ RRNFP+ +P K G T +RCVR++ + + L + +N L K+ F +PL +KAL + S ++FQ+ K KE+ S+ ++L ++ + ++Q L YLG FR L +P W N+EA +++ I I+++ +K+ L+ +M KL + +C ++ D+L QE+L+PG LF + + N+L ++ KI + K + K I + F + P YLL+TG+L T G Q++GL ++ D +NF R++++FR HRGA F M+++T+RRLLPESWGF+CPVHTPDG PCGLLNH + V + +L L + ++ + ++D V+L+G ++G++ A E A+ +R KV E +P E+ ++ + +PG+++FT RL+RPV N+ G E IGT EQ +++++ + + GG S THQEL S+ S A F P+ ++N SPRN+YQCQM KQ+MG+ + + RSDNKLY PQ PL R YD ++M P+G N IVA+ SYT YDMEDAM++N S ERG ++YK IDL+ + D V G +V LD DGLP IGA+L G Y+ + T + V YK + V NI +D G+ ICI ++ RN IGDKF+SRHGQKG+ S D+P +E G++PD LFNPH PSRMT+GM+IE +AGK AAL D+T F + + +E + L++ Y+ +G ER Y G G ++++I +GVVYYQRLRH+V DK+QVRT G D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ + C C S + P+LE+ P + +A + C +C ++ + V VP V R+F+ EL MN+KV+L V
Sbjct: 31 QKAALQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAF-KDERISLTIVDAVISPPSVPKGTICKDLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQV------LNYLGECFRVKLSLPDWYPNVEAAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSI----KIVLDKRAQKANVSINNENLMKIFSMGTELTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDTAPCRPYSDCYP---VLLDGVMVGWVDKDLAPEVADTLRRFKVLR--EKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGRE--ELIGTMEQLFMNVAIFE-DEVFGGIS----THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLEYGDP-YYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAHMCVECGSLL----SPLLEKPP---PSWSAMRNRKYNCTVCGR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134
BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Match: sp|Q5REE8|RPA2_PONAB (DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii OX=9601 GN=POLR1B PE=2 SV=1) HSP 1 Score: 721.079 bits (1860), Expect = 0.000e+0 Identity = 423/1140 (37.11%), Postives = 638/1140 (55.96%), Query Frame = 3
Query: 6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEI----VKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVI----GCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGAT-FCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
+K +Q+ TR +++SFN + G+ ++ + P EF ERI I + +I P K +I ++YP ECR TY GK+ ++ +N + I + +G +PIM++S LC+L+ L + LI+HHEE +E+GGYFI+ G + ++R L+ RRNFP+ +P K G T + + CVR++ + + L + +N L K+ F +PL +KAL + S ++FQ+ K KED S + + E +T L YLG FR L +P W N +A ++ I I++K EK+ ++ +M KL + +C +++ D+L QE+LTPG LF + L +L ++ KI K + K + + F + P YL +TG+L T G+ Q++GL ++ D +NF R++++FR HRGA F M+++T+RRLLPESWGF+CPVHTPDG PCGL+NH + V + +L L + ++ +S+ S+ V+L+G ++G++ A A+ +R+ KV E +P TE++ ++ + +PG+++FT RL+RPV N+ G+ E IGT EQ +++++ +G THQEL S+ S A F P+ ++N SPRN+YQCQM KQ+MG+ + + RSDNKLY PQ PL R YD ++M P+G N IVA+ SYT YDMEDAM++N S ERG ++YK IDL+ + D S++ ++ LD DGLP IGA+L G Y+ + T + V YK + V NI +D G+ +CI ++ RN IGDKF+SRHGQKG+ S D+P +E G+VPD LFNPH PSRMT+GM+IE +AGK AAL D+T F + + +E + L++ Y+ +G ER Y G G ++++I +GVVYYQRLRH+V DK+QVRT G D +T QP+ GR V GGIR GEMERD LL+HG + F L DR+ +C SD+ + C C S + P+LE+ P + +A + C LC ++ + V VP V R+F+ EL MN+KV+L V
Sbjct: 31 QKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAF-KDERISFTILDAVISPPTVPKGTICKEVSVYPAECRGRRCTYRGKLTADISWAVNGISKGIIKQFLGYVPIMVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTHYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRI-VMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSI----KIAFDKKAQKTNVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHRSY---SECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLR--EKRIPPWTEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKE--ELIGTMEQIFMNVAIFEDEVFAG-----VTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGMKPGDPRILQKLDDDGLPFIGAKLQYGDP-YYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFFLLHDRLFNC-SDRSVAHVCVKCGSLL----SPLLEKPP---PSWSAMRNRKYNCTLCNR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 1136
BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Match: sp|Q54BM1|RPA2_DICDI (DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium discoideum OX=44689 GN=polr1b PE=3 SV=1) HSP 1 Score: 682.559 bits (1760), Expect = 0.000e+0 Identity = 406/1166 (34.82%), Postives = 645/1166 (55.32%), Query Frame = 3
Query: 15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPE----------------TITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDR----TGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFT---TNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNV-KIFMSKN-SNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFL-----KKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEI-ICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDE--SVIGCGNKVFDDLD----WDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTK-YKESQVGYVINISRNGSDYGAT--------ICIKLE--RNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQ---TSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
+++ + +IDSF+ F GI +LK +P FE + + + + + + ++ +YP E R TY + L N E T +G +PIM++S CHL+G+S E+LI+ EE+ E GGYFIV GN+ ++R LV T+ N PV H+K T+R T + IRCVR D ++ L + ++ L+ ++ F +P +++KAL++ + E++++ + + + + + S RE++ T L+Y+GS+FR + P +N++ GR FI++++ +++ +Y +KY L+++M+ KL++ V KC ++ D+ FQE+L G ++ + + L YL + V K F K S + + +K + +I + Y L+TG+L + ++Q +G ++ D +NF RFI++FR+ HRGAFF MK++ IR+L+PESWGF CPVHTPDG PCGLLNH S N +V AA + L ++ ++ + + + Q++ + L+G++LG I + +E +RY + + E +P+T EI ++ Q+ GI +FT R +RPV N+ G+ E IG EQ Y++I+ + G TH E S +++S A TP+ +YN SPRN+YQCQM+KQ+MG +S +R+DNKLY Q P+ +K +F P G N ++A+ S T YDMEDAM+IN ++ ERG G ++YK+ IDL R ++ + G N V D+LD DGLP +G + PG+ Y Y ++ +VTK YK + Y+ ++ GAT IC+KL RN IGDKFSSRHGQKGV S +++P +E G+ PD + NP++ PSRMT+GM++E +AGK A+ K D+TAFQ + ++ + L ++ FG E+ Y G G+ + EI GV YYQRLRH+V+DKYQVR +GK++ +TRQP+KGRKVGGGIR GEMERD LL+HGA+FCL DR++ +SD ++ C C S + Y + + NQT + CK C+ S++++ + +P V + + EL +N+ ++L V+
Sbjct: 4 ELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRPTRNIVEKEIKLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDLGRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVAL---HRKAWTNRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFLPATLLLKALKDTTEKEIYENIVQGDNENTFLTDRV----ELSLREQKINNINTQEEVLDYIGSRFRARTQFPPSFSNIKIGRWFINQFVFVHLPNYNDKYNLLILMIQKLYAMVGGKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDALKKVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQKAQTLLPSFLAAHGMLPIDMVSVY--QHQYLTITLDGRVLGKIEPKAGEEMVKMLRYLRSMGN-EPSIPKTMEISYAPPTNVENGQYSGISLFTTGARFMRPVVNLTSGQN--ELIGPQEQLYMEIAVVPHEVIKG-----VTTHIETSPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKTFFGRPNTVVDELDKFIDTDGLPFVGRLIKPGEP--YYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGKFQDATAFQFDENNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMK-SSDFAKIKVCKLCGSTLTIYSKK-----DYSNQTVS-------ECKSCK-------SSDSIATISIPYVFTYLVAELAAVNITMKLQVS 1130
BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Match: sp|Q9P7X8|RPA2_SCHPO (Probable DNA-directed RNA polymerase I subunit RPA2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa2 PE=3 SV=2) HSP 1 Score: 672.929 bits (1735), Expect = 0.000e+0 Identity = 413/1174 (35.18%), Postives = 633/1174 (53.92%), Query Frame = 3
Query: 18 IQDFTRDYIDSFNAFLKPGIRN-ILKHLKP-------TEFELGT---GERXXXXXXXXXXQKPKCSIDN----TRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPH-QKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDF-PKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSN----KPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAA--------QFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCG--------NKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATIC------IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCE---------NDIRYSYSNE------NMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
+Q + ++DSFNA G+ N +K + T+ E G G +I ++ + I KP S R +YP E R TY+ ++++ + ++N ++ VG IPIM+RSN CHL GLS ELI H EE +E+GGYFIV G + ++R L+ +RN P +P GT + + IRCVR D+++ L + +N + K + IP +I+KAL S E+F+ K + + + + +M + + + L+YLGSKFR L + LT++E GR + + + +++++ ++K+ L+L M+ KL++ V +CC ++ D+ QEIL G L+ Q+ + + ++L ++ + + + +++ K + + K + I + Y LSTG+L T ++Q G ++ + +NFYRF+++FR HRGAFF ++K++T+R+LLPE+WGF+CPVHTPDG+PCGLLNH + + + Q SL L ++ +S + CV L+GK++G+ + A+ A+ +R K+ +L TE + + Q+PG+Y+F+N R++RPV +I GE ++ +G FEQ Y+DI+C + VS TH E S +V S A TP+ ++N SPRN+YQCQM KQ+MG + RYR+DNKLY Q P+ R K ++ + + P G N +VA+ SYT YDMEDAM++N ++ ERG G +YK DL+ R R + V G + LD DGLP IG +L G + A Y T Q + Y ++ G+V + G+D G + C +++ R+ IGDKFSSRHGQKG+ S K TVD+P +E G+ PD + NPH+ PSRMT+GM IE +AGK A + DST F S+ + + L Y+ G E Y G G+ M ++I +GVVYYQRLRH+V DK+QVRT G I N+TRQPVKGRK GGIR GEMERD ++ HG +F +QDR+++C SD C +C S I + + RC+ C +DI S + N + +P+V + ELT MN+K+ L V
Sbjct: 25 LQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGALKFGNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPRQSEMREVGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNNGVTMFRFHWRKNEYLIPSMMILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAY--KSYGLYSQTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQKVVLVHLREAKDKFRLLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDFSDRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPSDVSQIPSLLLSLG-----VDPPSVVGHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYLFSNPARMVRPVKHISTGE--LDMLGPFEQVYMDIACFPKEIVP----KVS-THVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPFIGIKLEDGDP-IVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLAGKAGACHGLAQDSTPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTSFLMQDRLMNC-SDYAQSWVCRDCGSIISIMST---------ISMNGVGSASEVRCRSCAKPALGLEDTSDIWQDGSGKKFVGGTNTTLIALPSVFNYLTAELTAMNIKMMLEV 1173
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: A0A3Q0KN97 (Putative dna-directed RNA polymerase I subunit OS=Schistosoma mansoni OX=6183 PE=3 SV=1) HSP 1 Score: 842.032 bits (2174), Expect = 0.000e+0 Identity = 476/1164 (40.89%), Postives = 690/1164 (59.28%), Query Frame = 3
Query: 18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNI-YPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPV-VQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKA-KEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIV--KSSFKDSKRILNPMHYLLSTGSL-----GQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFL---KKSVMELN-QIKSFADKSQFICVMLNGKLLGYIYD-RFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIM-----FGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTP-----------DRGRL--DESVIG-CGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKES-QVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVS-EDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHS-----YYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIR--YSYSNENMLR-VRVPAVTRHFIHELTTMNVKVQLSVAPLD 3368
++ +R + SF+ F+K G+ ++KHL+P EF +G + I P DN + YP ECRR LTY G++ +++ +++N S + G +PIM+ S C+L L + H EE E+GGYFIV G + +LR L+ +RRN+P+ + +K G T H +RCVR+DET S + L W N P L + ++ F +P+ +I++AL K+ E+F D + E FS+ E + + ++ ++++ L YLG FR+ + +P L++ EAG+ + EYIAI++ + +KY L+ M+ KLH+FV+ CC+ES D FQE+L P +L+ QV R +++ LANV V + S+ N I + ++ + + M Y++STG+L ++ Q+ GL + DN+NF RF A FRA HRGAFF +M+++++RRLLPE+WGF CPVHTPDG PCGLLNH + +++ +L K +EL+ Q+ A++ + V+L+G+L+G++ A+ A +R KV P+ + +P T EI + +Q+PG+Y+F RLLRPV N+ G+ VIE+IGTFEQ YL+IS + S + +H E++ E+++SF AG PY ++N SPRN+YQCQM+KQ+MG++ Y+ R RSD K Y PQ PL R+K Y ++++ PLG+N IVA+ SYT YDMEDAMVIN S +RG+ IYK VIDL+ + RL E G G K LD DG PP+GARL PG S +YA S+T Q KY+ Q+ YV +IS NGS ATI ++L R DIGDK+SSRHGQKG+NSL +Q ++P S +G++PD +FNPH P+RMT+GMMIEF+AGK AAL+ ID+T FQ S+ E+Y L ++ +G E G GR ++++I +GVVYYQRLRH+V DKYQVR G+ D I RQP+KGRKVGGGIRLGEMERD LLSHG F LQDR++D N DKV + CS C HS + Q+ +N + N W C+LC++D S +N L+ V+V A R+ +EL +NVK +LS+ L+
Sbjct: 1 MEKLSRVHTGSFDFFVKEGLSRLVKHLQPLEFN--SGSDVVEFKIQFIEVAPPVDSDNRSTLLYPSECRRSGLTYGGELKLSVRVSVNGSPLGVLDVPCGVLPIMVMSRACNLSSLPRSQFYLHGEEFKEIGGYFIVHGKERVLRLLIMSRRNYPLAISRSTFKKRGHGYTEHAIVMRCVREDETVSILMLHWLVNGEPALAFIVEREQFLVPISIILRALVKKTEFEIFDDIRRGCGESFSLEENAMRILIRL--KDDEYSSQTRALCYLGGLFRKRMNVPDRLSDEEAGKFLLSEYIAIHLSSFLDKYHLLCFMIKKLHAFVSGLCCEESNDNPMFQEVLLPSTLYLQVLRAKVLHLLANVKEQV-LLKSRKQNVRISLSLFHQALLSRASEVSTAMVYMVSTGNLPPSCKSTLSAQLSGQSTGLSVPADNVNFLRFAAQFRAVHRGAFFTEMRTTSVRRLLPEAWGFFCPVHTPDGAPCGLLNHLAEPVEAVCETPKQSVLENIGNWLSTHKLRPIELSRQLFGVAEQQNALPVLLDGRLIGWLSTLDEAKRLALELRNSKVDPNCKN-IPHTMEITLVPSTDVGSQYPGLYLFAGGSRLLRPVKNLQCPKNSAGKDVIEWIGTFEQVYLNISVKEEELSE--RSPIDRSHIEIAPENIFSFVAGLIPYPDFNQSPRNMYQCQMAKQTMGHSCYTWRNRSDAKAYRLFTPQSPLVRTKMYVKYDVDHYPLGFNAIVAVMSYTGYDMEDAMVINKASYDRGLAGACIYKSEVIDLSSLSKSTSSNNPFQKKRLVTSEYYFGFAGEKPDKGLDLDGFPPVGARLEPGVSWLYAYTHSETLQTNFIKYEGGEQIAYVDSISLNGSWSCATITLRLPRQPDIGDKYSSRHGQKGINSLLIQCEEMPWSTTNGLIPDLIFNPHGFPTRMTMGMMIEFLAGKSAALTGNLIDATPFQWSEDSPPYEDYCQILTDCGFNHWGTETMMSGSTGRQLEAQIYVGVVYYQRLRHMVADKYQVRAEGRFDPILRQPIKGRKVGGGIRLGEMERDCLLSHGLVFSLQDRLVDSNCDKVKMLACSKCGGLTHSDLARNITNTSVNQITSNNSSSFVPGTNRWCCRLCDSDSSDCVSRDRDNSLKYVKVSASFRYLTYELACLNVKTRLSLIDLE 1156
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: A0A5K3ENF3 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1) HSP 1 Score: 838.565 bits (2165), Expect = 0.000e+0 Identity = 463/1155 (40.09%), Postives = 683/1155 (59.13%), Query Frame = 3
Query: 27 FTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPV-VQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFP-KAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIK--EIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVK----------QNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLK----KSVMELNQIKSFADKSQFICVMLNGKLLGYIYD-RFAQEFANHIRYKKVFPD-PELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPV------IEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTP-----DRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKES-QVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSED-GIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNS------WRCKLCENDI---RYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
R +I SFN LK G++ ++K+++P G+ + E++ I P+ + +I+P ECRR TY G + +T+ + N + + G +PIMI SN C+L + E I+H+EE+ E+GGYFIV G + +LR L+ RRN+P+ + +K G T +RCVRDDE +S I L W N P L + + +P+ ++++AL +K+ LE+++D S+ E + + +E + L YLG FR + +P T+ AG + EY+ I+V + +KY ++ MV KLH+FV+ CCQES D L FQE+L PG+++ QV R L+ YL V R S+ S KP++ I + ++ ++N + + ++ G+L PG Q +GL + D +NF RF A FRA HRGA F DM+++++RRLLPE+WGF+CPVHTPDG PCGLLNH + +T S + L +L + V Q+ + + V+L+G+L+G+ + A++ A+ +R+ K+ P+ P+ VP T EI + T +QFPG+Y+F RLLRPV +++ P IE IGTFEQ Y+DI+ M ++ H E+S ES++SFTA TPY ++N SPRN+YQCQM+KQ+MG++ Y+ R+R+D K+Y L PQ PL R+K+Y+++N+ PLG+N +VA+ SYT YDMEDAMVIN +S ERG IYK VIDL R + E G ++ ++D DG PPIG RLIPGKS +Y +T ++ +YK+ Q+ YV IS NGS A I ++L R DIGDK+SSRHGQKG+NS+ + D+P + D GIVPD +FNPH P+RMT+GMMIEF+AGK AAL+ + +D+T FQ ++ EY L + ++ +G E G GRL+++ I +GVVYYQRLRH+V DKYQVR G+ D + RQP+KGRKVGGG+RLGEMERD LLSHG +F LQDR++ N DKV + CSNC +H + ++ + + + G+S WRC+LC + S +N +L + VPA R+ +EL +NV+ +++V
Sbjct: 4 LARMHIQSFNFMLKSGLKRMVKYMQPVYITTPQGDEYSLNFESVEISHPRAHDRKSVSIFPHECRRTGQTYGGNLAITVKVRRNGCDMGIVDVSNGELPIMILSNACNLSDIPRSEFIRHNEEEHELGGYFIVNGKERLLRLLIMARRNYPLAITRSSFKKRGPSYTEFSVIMRCVRDDEHSSLIMLHWVMNGEPILAFTVENEQLFVPISILLRALMDKTELEIYEDIRCGGGNSLSLEEHAMRILTRL--QEDDYNCQSRALCYLGKLFRLKMHLPGSYTDRAAGEHLMREYLIIHVDSFADKYHVLCYMVRKLHAFVSGACCQESNDNLMFQEVLLPGTMYIQVLRNRLITYLHTV-REQLYLHSRKSTKPLEIINIRHALARNISEVINGVSFFVANGNL-----PGSSRAIIGRLLNGQASGLSVPLDTVNFLRFAAQFRAVHRGAMFNDMRTTSVRRLLPEAWGFLCPVHTPDGAPCGLLNHLAESTEAVCVTPSHALVNKLAIWLLEHNLRPVELTRQLTAANEYRDVFPVLLDGRLVGWSPSVQSARQLADELRFAKLDPNCPQ--VPTTMEICLVPPTETGSQFPGLYLFVGGSRLLRPVKSLVRVGPENVDKAEIEMIGTFEQPYMDIAVTLDELMERPVAERR--HFEVSPESIFSFTASLTPYPDFNQSPRNMYQCQMAKQTMGHSTYTWRHRADPKIYRLLTPQSPLVRTKSYNKYNVDHYPLGFNAVVAVMSYTGYDMEDAMVINKSSYERGFADACIYKSEVIDLADYSIKGQRKKQTEHYFGGPAELPPNIDIDGFPPIGTRLIPGKSILYVYTHYETMEMTAVRYKDGEQIAYVEAISLNGSWSKACITLRLPRRPDIGDKYSSRHGQKGINSILVPADDMPWTVDSGIVPDLIFNPHGFPTRMTMGMMIEFLAGKSAALTGQRVDATPFQWTEEKPPFSEYADQLTNAGFNYWGTEAMMSGVTGRLLEAHIFIGVVYYQRLRHMVADKYQVRAEGRFDPVLRQPIKGRKVGGGVRLGEMERDCLLSHGLSFTLQDRLLGSNCDKVKMLVCSNCGGMVHEDL--ISDETITRSSSSIQQRGHSLARKVRWRCRLCSQTTSSGQVSAANNKLLLIDVPAAFRYLTYELACLNVQTRIAV 1144
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: G4VEG3 (Putative dna-directed RNA polymerase I subunit OS=Schistosoma mansoni OX=6183 GN=Smp_140690 PE=3 SV=1) HSP 1 Score: 830.091 bits (2143), Expect = 0.000e+0 Identity = 471/1170 (40.26%), Postives = 686/1170 (58.63%), Query Frame = 3
Query: 18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNI-YPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPV-VQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTR----------ERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIV--KSSFKDSKRILNPMHYLLSTGSL-----GQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFL---KKSVMELN-QIKSFADKSQFICVMLNGKLLGYIYD-RFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIM-----FGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTP-----------DRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKES-QVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVS-EDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHS-----YYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIR--YSYSNENMLR-VRVPAVTRHFIHELTTMNVKVQLSVAPLD 3368
++ +R + SF+ F+K G+ ++KHL+P EF +G + I P DN + YP ECRR LTY G++ +++ +++N S + G +PIM+ S C+L L + H EE E+GGYFIV G + +LR L+ +RRN+P+ + +K G T H +RCVR+DET S + L W N P L + ++ F +P+ +I++ S+ +++ F + ++ +F KF R + ++++ L YLG FR+ + +P L++ EAG+ + EYIAI++ + +KY L+ M+ KLH+FV+ CC+ES D FQE+L P +L+ QV R +++ LANV V + S+ N I + ++ + + M Y++STG+L ++ Q+ GL + DN+NF RF A FRA HRGAFF +M+++++RRLLPE+WGF CPVHTPDG PCGLLNH + +++ +L K +EL+ Q+ A++ + V+L+G+L+G++ A+ A +R KV P+ + +P T EI + +Q+PG+Y+F RLLRPV N+ G+ VIE+IGTFEQ YL+IS + S + +H E++ E+++SF AG PY ++N SPRN+YQCQM+KQ+MG++ Y+ R RSD K Y PQ PL R+K Y ++++ PLG+N IVA+ SYT YDMEDAMVIN S +RG+ IYK VIDL+ + RL S G K LD DG PP+GARL PG S +YA S+T Q KY+ Q+ YV +IS NGS ATI ++L R DIGDK+SSRHGQKG+NSL +Q ++P S +G++PD +FNPH P+RMT+GMMIEF+AGK AAL+ ID+T FQ S+ E+Y L ++ +G E G GR ++++I +GVVYYQRLRH+V DKYQVR G+ D I RQP+KGRKVGGGIRLGEMERD LLSHG F LQDR++D N DKV + CS C HS + Q+ +N + N W C+LC++D S +N L+ V+V A R+ +EL +NVK +LS+ L+
Sbjct: 1 MEKLSRVHTGSFDFFVKEGLSRLVKHLQPLEFN--SGSDVVEFKIQFIEVAPPVDSDNRSTLLYPSECRRSGLTYGGELKLSVRVSVNGSPLGVLDVPCGVLPIMVMSRACNLSSLPRSQFYLHGEEFKEIGGYFIVHGKERVLRLLIMSRRNYPLAISRSTFKKRGHGYTEHAIVMRCVREDETVSILMLHWLVNGEPALAFIVEREQFLVPISIILRV----SFKSLYKTFGNVR-----TCNISFLFLKFHIRNAMRILIRLKDDEYSSQTRALCYLGGLFRKRMNVPDRLSDEEAGKFLLSEYIAIHLSSFLDKYHLLCFMIKKLHAFVSGLCCEESNDNPMFQEVLLPSTLYLQVLRAKVLHLLANVKEQV-LLKSRKQNVRISLSLFHQALLSRASEVSTAMVYMVSTGNLPPSCKSTLSAQLSGQSTGLSVPADNVNFLRFAAQFRAVHRGAFFTEMRTTSVRRLLPEAWGFFCPVHTPDGAPCGLLNHLAEPVEAVCETPKQSVLENIGNWLSTHKLRPIELSRQLFGVAEQQNALPVLLDGRLIGWLSTLDEAKRLALELRNSKVDPNCKN-IPHTMEITLVPSTDVGSQYPGLYLFAGGSRLLRPVKNLQCPKNSAGKDVIEWIGTFEQVYLNISVKEEELSE--RSPIDRSHIEIAPENIFSFVAGLIPYPDFNQSPRNMYQCQMAKQTMGHSCYTWRNRSDAKAYRLFTPQSPLVRTKMYVKYDVDHYPLGFNAIVAVMSYTGYDMEDAMVINKASYDRGLAGACIYKSEVIDLSSLSKSTSSNNPFQKKRLVTSEYYFGEKPDKGLDLDGFPPVGARLEPGVSWLYAYTHSETLQTNFIKYEGGEQIAYVDSISLNGSWSCATITLRLPRQPDIGDKYSSRHGQKGINSLLIQCEEMPWSTTNGLIPDLIFNPHGFPTRMTMGMMIEFLAGKSAALTGNLIDATPFQWSEDSPPYEDYCQILTDCGFNHWGTETMMSGSTGRQLEAQIYVGVVYYQRLRHMVADKYQVRAEGRFDPILRQPIKGRKVGGGIRLGEMERDCLLSHGLVFSLQDRLVDSNCDKVKMLACSKCGGLTHSDLARNITNTSVNQITSNNSSSFVPGTNRWCCRLCDSDSSDCVSRDRDNSLKYVKVSASFRYLTYELACLNVKTRLSLIDLE 1155
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: A0A4S2L477 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_009880 PE=3 SV=1) HSP 1 Score: 822.002 bits (2122), Expect = 0.000e+0 Identity = 453/1173 (38.62%), Postives = 686/1173 (58.48%), Query Frame = 3
Query: 18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPH-QKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAK-EDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIV--KSSFKDSKRILNPMHYLLSTGSL-----GQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLK----KSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRF-AQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFG-EP----VIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLT--------------PDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKES-QVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVS-EDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNS---------------WRCKLCE-NDIRYSY---SNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAPL 3365
++ +R ++ +F+ L+ G++ ++K+L P+EF G+ ++ +E + I P+ + +YP ECRR TY + + + L+IN + + G +PIM+ S C+L L+ E KH EE+ E+GGYFIV G + +LR L+ TRRNFP+ +P ++ G+ + +RCVR+DE S + L W N P L + ++ F +P+ ++++A+ NK+ EMF D + E S+ E + + ++ +++ L Y+G FR +++P T+ +AG I YI I++ + +KY L+ M+ KLH+FV+ +CC+E+ D L FQE+L P +L+ QV R + L N ++ + S+ S I + +S + I + M YLL TG+L + Q +GL + DN+NF R A FRA HRGA F D++++++RRLLPE+WGF+CPVHTPDG PCGLLNH + +D+L +L +SV Q+ + + V+L+G+L+G++ A++ A+ +R K+ + VP + EI + +Q+PG+++FT RLLRPV N+ G +P ++E+IGTFEQ YLDI+ + DV +H EL+ + ++SF AG TPYQ++N SPRN+YQCQM+KQ+MG++ Y+ R+RSD K Y L PQ PL R+KTY ++++ PLG+N IVA+ SYT YDMEDAMVIN S ERG+ IYK V+DL+ + E G N+ LDWDG PP+G RL PG S +Y +T+ + KY+ Q+ YV IS NGS ATI ++L R DIGDK+SSRHGQKG+NSL + + ++P S G+VPD +FNPH P+RMT+GMM+EF+AGK AAL+ K +D+T FQ ++ +Y L ++ +G E G GR +++ I +GVVYYQRLRH+V DKYQVR+ G+ D I RQP+KGRKVGGGIRLGEMERD LLS G +F LQDR++D N D V + C C S +H+ + V + + + G S W C+LC+ ++ S+ + ++ RVRV A R+ ++EL+ MN++ L+++ L
Sbjct: 1 MEKLSRIHVRAFDFMLRDGLKRMVKYLVPSEFICPNGDVCELRVEFLEIGNPRHD-KAGKPVYPHECRRQGTTYGATLRLNVRLSINGTAASVLEIPCGEVPIMVLSRACNLSKLNRAEFPKHLEEEREIGGYFIVNGKERVLRLLIMTRRNFPLAISRPSFKRRGSGYSEFAIIMRCVREDEAVSTMMLHWLMNGEPVLAFIVEREQFFVPISILLRAMVNKTEFEMFDDIRRGSGESLSLEETAMRILVRL--KDEDYSSQTRALSYMGRLFRGRMRLPTNATDEDAGIFLIRRYIGIHLDSFVDKYHLLCFMIRKLHAFVSGQCCEETNDNLMFQEVLLPSTLYLQVLREKIRQLLDNTKDHI-LARSRKSKVKINSTLLQQSLLSRAPEIGSAMTYLLCTGNLPPTLRSDLAAQFGGQASGLSVPADNVNFLRLAAQFRAVHRGALFTDIRTTSVRRLLPEAWGFICPVHTPDGAPCGLLNHLAEPVEAVCETPKHSTNDALAAWLTSNKLRSVELSRQLSGVTEAQNALPVLLDGRLVGWLSSLIEAEQLADELRDLKLDTQSKH-VPYSLEIALVPPTDVGSQYPGLFLFTGGSRLLRPVKNVRHGNQPEVGGLVEWIGTFEQPYLDIAVTQ-EELQERPEDVQ-SHMELTPDGIFSFVAGLTPYQDFNQSPRNMYQCQMAKQTMGHSCYTWRHRSDVKAYRLLTPQSPLVRTKTYVKYDIDHYPLGFNAIVAVMSYTGYDMEDAMVINKGSYERGLAGACIYKSEVLDLSVLNKQAISKSQGFARRKTVAAEHYFGTPNQPPPGLDWDGFPPVGTRLEPGVSALYCYTHVETQHTTIVKYEGGEQIAYVDAISLNGSWSHATITLRLPRPPDIGDKYSSRHGQKGINSLLVPSDEMPWSVTSGVVPDLIFNPHGFPTRMTMGMMVEFLAGKSAALTGKRVDATPFQWTEDNPPFTDYCRQLADCGFNYWGTEMMMSGCNGRQLEAHIYIGVVYYQRLRHMVADKYQVRSQGRFDPILRQPIKGRKVGGGIRLGEMERDCLLSQGLSFTLQDRMVDSNCDTVTMLACKKCGSLVHT---DLARNVSSNEELSTSFFGVSAIGSAESSGPFNRHLWSCRLCDRTEVDSSFIGNTKAHLKRVRVSAAFRYLVYELSCMNIQTHLTLSDL 1163
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: A0A564Y4U9 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS2916 PE=3 SV=1) HSP 1 Score: 810.061 bits (2091), Expect = 0.000e+0 Identity = 463/1156 (40.05%), Postives = 675/1156 (58.39%), Query Frame = 3
Query: 3 MEKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPV-VQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKED-FSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIK--EIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVK----------QNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVM---ELNQ-IKSFADKSQFICVMLNGKLLGYIYDRFA-QEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIM------FGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTP-----DRGRLDESVIGCGNK-VFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVS-EDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAG---LRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQT--DNAKHGNSWRCKLC---ENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQL 3350
+E ++Q +R ++DSFN ++ G++ +L++L+P F +G E V I Q + ++ +T IYP ECRR TY G + M++ + + + GTIP+M+ S+LC+L L E K +EE E+GGYFIV GN+ +LR ++ RRN+P+ V +K GT T + +RCVR+DET + + L W N P L + + +P+ V+++AL +K+ E+++D + + S+ E + N+ +E +++ L ++G FR + + L++LE G+ + EY+ I+ K + +KY ++ M+ KLH+FV+ CC E+ D L FQE+L PG+ + Q+ R ++ YL + + I S+ + KP++ ++ + + + M + TG+L PG Q+ GL + D INF RF A FRA HRGA F DM+++++RRL PE++GF+CPV+TPDG+PCGLLNHF+ NT V S D L ++L+K + EL+Q + + V+L+G+L+G+ A +E A +R K+ + L VP EI + TA+Q+P +Y+FT S RLLRPVY+ + P IE IGTFEQ YLDI + D H+E+S E ++SF A TP+ ++N SPRNLYQCQM KQS+ ++ YS YRSD K Y PQ PL R+KTY ++++ P+G N IVA+ SYT YDMEDAMVIN S +RG+ IYK +IDL R + E G K + D+D+DGLP IGA+LIPGKS Y +T+++ YK Q GYV +IS +G Y TI +++ R DIGDK+SSRHGQKG+NS+ + DLP S + G++PD +FNPH P+RMT+GM+IEF+AGK +AL+ D+T FQ +D V Y+ L Y +D G E G G+ +++ I MGVVYYQRLRH+V DKYQVR G+ D RQP+KGRKVGGGIRLGEMERD L+S G +F L DR++ N DKV + CS C IH+ +Q + T + WRC+LC E S N+ L V VPAV RH +EL +NV+ +L
Sbjct: 8 IENEKMQRLSRAHVDSFNFMVRVGLKRMLEYLQPIYFHVGDEEYSLGVEHLEIGQPMEPNLKSTL-IYPHECRRNGETYAGTLKMSIRIRSKSVDFGVVDVAGGTIPVMVMSDLCNLSKLPRSEFYKVNEETRELGGYFIVNGNEKVLRMIIMARRNYPIAVSRSSFKKRGTGFTEYCVIMRCVREDETAAPVMLHWVTNGEPVLAFTVENEQVFVPVSVLLRALVDKTEFEIYEDIIRGGGNSLSLEEHAIKILNR--CKEEDYSSQARALSHIGRLFRLKMYLSKCLSDLEVGKHLLTEYVLIHTKSFFDKYHILCYMIRKLHTFVSGGCCVENNDNLMFQEVLLPGTQYVQLLRNRIITYLHSAREQISI-ASRRTTKPLEYANFRQALNRTYAEVTSNMTSFIMTGNL-----PGTSKAVLGRLLNGQSTGLSVTVDTINFLRFAAQFRAVHRGAMFTDMRTTSVRRLQPEAFGFICPVNTPDGSPCGLLNHFAKNTEVVTETPSDSMIDDLAQWLRKHYVRPVELSQQLMGHEEHCGIFPVLLDGRLVGWAPSGLAAKELACTLRIAKLDKNCSL-VPSNLEICLVAPTDTASQYPSLYLFTGSSRLLRPVYSYVRTGGCKLDNPEIEMIGTFEQPYLDIPVTQKELLQRSPEDR--LHREISPEDIFSFIASLTPFCDFNQSPRNLYQCQMGKQSIAFSNYSYMYRSDPKFYRLFIPQSPLVRTKTYVDYDVDHYPVGINAIVAVLSYTGYDMEDAMVINKASYDRGIADACIYKTEIIDLRQYSTKNSRAKDAEHYFGGNEKDLPSDIDFDGLPRIGAKLIPGKSTFYVYTHRETKKMTTVVYK-GQFGYVDSISNHGVSYKVTITLRIPRRPDIGDKYSSRHGQKGINSILMSPSDLPFSTKTGMIPDLIFNPHGFPTRMTMGMLIEFLAGKSSALTGIFTDATPFQWNDEVPPYLDYGRILEQYGFDYHGTETMVSGITGQPLEAHIFMGVVYYQRLRHMVADKYQVRAEGRYDPELRQPIKGRKVGGGIRLGEMERDCLISQGLSFTLHDRLVGSNCDKVKMFVCSKCSGMIHADLVGESQQNAPNTTTLHQGLWSASRWRCRLCNQAEGSTPSSTRNKLSL-VEVPAVFRHLTYELACLNVQTKL 1149
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
Match: polr1b (RNA polymerase I subunit B [Source:NCBI gene;Acc:103036003]) HSP 1 Score: 767.303 bits (1980), Expect = 0.000e+0 Identity = 443/1143 (38.76%), Postives = 653/1143 (57.13%), Query Frame = 3
Query: 6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFS-----IVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKP---IKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGAT----ICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
++ +QD + +IDSF+ L G+ +++ + P EF + G+RI + + P K I ++P ECR TY GK++ ++ ++N I +++G +PIM++S LC+LHGLS +ELI+HHEE +E+GGYFIV G + ++R L+ RRNFP+ +P K G T + + CV+D+ T + L + DN L K+ F +PL +KAL + S +++Q+ K KE+ S + E+L ++ E TT L YLG +FR L +P W TN + + +DE + I++K EK+ + +M KL +F +C +E+ D+L QE+LTPG LF + + +L +V K+ + K S + E + F I Y+L+TG++ T G+ Q++GL ++ D +NF R++++FR HRGA F M+++T+R+LLPESWGF+CPVHTPDGTPCGL+NH + + + A +S+ +L + + ++S + C V+L+G ++G++ A +R KV + + P TEI+ + A+ +PG+++FT R++RPV N+ G+ E IGTFEQ YL++ G THQEL S+ S A F P+ ++N SPRN+YQCQM KQ+MG+ +S + RSDNKLY PQ PL R YD +N+ P+G N +VA+ SYT YDMEDAM++N +S ERG ++YK VIDL+ D V G KV LD DGLP IG L G Y+ + T Q V+ YK + V NI +D G +CI ++ RN IGDKF+SRHGQKG+ S D+P +E G+ PD LFNPH PSRMT+GM+IE +AGK AAL D+T F S+ +E + L++ Y+ +G ER Y G G ++++I +GVVYYQRLRH+V DK+QVRT G D +T QPV GR V GGIR GEMERD LL+HG++F L DR+ +C SD+ + + C +C S + P+LE+ P H T +H N+ C LC+ S S EN V VP V R+F+ EL MN+K++L V
Sbjct: 31 QQAAVQDLVKAHIDSFDQALSDGLAQVVQAIPPMEF-MHKGDRISLAFVEATVHNPTVAKGGICKDLRVFPAECRGRRCTYRGKLVADVSWSVNGVPKGIIKQSLGQVPIMVKSKLCNLHGLSPKELIEHHEEAEEMGGYFIVNGIEKVIRMLIMPRRNFPIALSRPKFKSRGQGYTQYGIAVHCVKDEHTAINMNLHYLDNGTIMLNFIYHKELFFLPLGFALKALVDFSDYQIYQELIKGKEENSFYKSCVSEMLRLVM------EEGCTTRAKVLNYLGERFRVKLHLPEWYTNEQCAKFLLDECLCIHLKSDSEKFYNLCLMTRKLFAFAKQECQEENPDSLMCQEVLTPGQLFLMFLKEKMTGWLVSV----KLALDKRSQRVAGITAENLTRIFNLGTDITRAFEYMLATGNIISKTGLGMLQDSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTTVRKLLPESWGFLCPVHTPDGTPCGLMNHMTTHCEIVAPTSSTSTLPAL-----LCSLGVTPVESTPSQPYSCCYPVVLDGAMIGWVEKDLAPSLVESLRRFKVLKEKRM--PPWTEIVLVPQTGKASLYPGLFLFTTPCRMMRPVRNLALGKQ--ELIGTFEQLYLNVGIFEDEIEEG-----VTTHQELFPHSMLSVVASFIPFSDHNQSPRNMYQCQMGKQTMGFPLHSYQDRSDNKLYRLQTPQSPLVRPVMYDHYNIDNYPIGTNAVVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEVIDLSEKAKGEDSVVFGTKPGDPKVGTKLDVDGLPAIGTVLNYGDP-YYSYVNLNTGQSHVSFYKSQETCVVDNIKVCSNDTGTGRFKRVCITMRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALEHFGDMLKAAGYNYYGTERLYSGLSGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQGGIRFGEMERDALLAHGSSFLLHDRLFNC-SDRSVAQVCMDCGSLL----SPLLEKPPPHWST--TRHRNTI-CMLCKK----SDSIEN---VSVPYVFRYFVAELAAMNIKIKLDV 1132
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
Match: polr3b (RNA polymerase III subunit B [Source:NCBI gene;Acc:103044942]) HSP 1 Score: 363.614 bits (932), Expect = 3.030e-107 Identity = 328/1182 (27.75%), Postives = 531/1182 (44.92%), Query Frame = 3
Query: 15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLT------INNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIW----LTNLEAGRRFIDEYIAINVK----DYREKYELILVMVLK-LHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQI--KSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISI-TAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIE--YIGTFEQ--------------TYLDISCQGGNTMSGGDSDVS--VTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDD-----------LDWDGLPPIGARL----------IPGKSNMYAQYSSQTEQ-----VKVTKYKESQVGYV--INISRNGSD-YGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
Q++ + +IDSFN F+ I+ I+K + + +K + + + + S + TR + P ECR ++TY + + + T I N+ P +G +PIM+RS+ C L G + E K +E + GGYFIVKG + ++ Q +N +V+ VG T + + R + + + + + NT + P+ +I KA+ +S E+ Q E+ + + ++ Q T L+Y+G+K R + +W T +E R + I +V ++R K + VMV + + + N+K + D + + G L +F + + + + + K ++VK +D +I N M +STG+ +Q +T ++ FI+ R F K S R L P WG +CP TP+G CGL+ + ++ T + ++ V ++N + + + + F+ V LNG +LG I R Q+ + R + R I + +SI T +YI ++ GRL RP + G+P ++ +I Q YLD++ + +++ + ++ TH E+ ++ AG PY ++N SPRN YQC M KQ+MG Y+ R R D +Y PQ P+ ++KT + + +K P G N VA+ SY+ YD+EDA+V+N SL+RG GRC +YK+ L + + V+G + D LD DG+ G R+ +P + + S+Q Q V +T YK S Y+ + IS N D + I ++ R +IGDKFSSRHGQKGV L + D+P + GI PD + NPH PSRMTVG +IE +AGK L + TAF S V++ L Y Y+ G + G G +++ I G VYYQ+L+H+V DK R G +TRQP +GR GG+RLGEMERD L+ +GA+ L +R++ +SD V C C G S C C++ S +R+P + EL +MN+ +L ++
Sbjct: 41 QVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALP------IGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVEQDRKGAVGASVTS-STHEKKSRTNMIVKQGRFYLKHNTLSE----------DAPIAIIFKAMGVESDQEIVQMI--GTEEHVMAAFAPSLEE---CQKAQIFTQTQALKYIGNKVR---RQRMWGGPKKTKMEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVILAQGNNKV--DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQF-DVVKHMRQD--QITNGMVNAISTGNWSLKRFKMDRQG-----VTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPI---IKLAFNLGVEDVNLLCGEELSYPTVFL-VFLNGNILGVI--RNHQKLVSTFR-----------LMRRAGFINEFVSISTNVTDRCVYISSDGGRLCRPYIIVKNGQPAVKNKHIEELSQGYRNFEDFLHESLVEYLDVNEENDCSIALYEHMITKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMG---PMLDAETRKPIWRHSILDADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQPGQPQYRDVPIT-YKGSTDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK-VKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM-ISSDAFEVDVCGQCGLL-----------------------GYSGWCHYCKSSCHVS-------SLRIPYACKLLFQELQSMNIIPRLKLS 1134
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
Match: polr3b (RNA polymerase III subunit B [Source:NCBI gene;Acc:103044942]) HSP 1 Score: 362.459 bits (929), Expect = 8.330e-107 Identity = 327/1182 (27.66%), Postives = 531/1182 (44.92%), Query Frame = 3
Query: 15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLT------INNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIW----LTNLEAGRRFIDEYIAINVK----DYREKYELILVMVLK-LHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQI--KSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISI-TAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIE--YIGTFEQ--------------TYLDISCQGGNTMSGGDSDVS--VTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDD-----------LDWDGLPPIGARL----------IPGKSNMYAQYSSQTEQ-----VKVTKYKESQVGYV--INISRNGSD-YGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
+++ + +IDSFN F+ I+ I+K + + +K + + + + S + TR + P ECR ++TY + + + T I N+ P +G +PIM+RS+ C L G + E K +E + GGYFIVKG + ++ Q +N +V+ VG T + + R + + + + + NT + P+ +I KA+ +S E+ Q E+ + + ++ Q T L+Y+G+K R + +W T +E R + I +V ++R K + VMV + + + N+K + D + + G L +F + + + + + K ++VK +D +I N M +STG+ +Q +T ++ FI+ R F K S R L P WG +CP TP+G CGL+ + ++ T + ++ V ++N + + + + F+ V LNG +LG I R Q+ + R + R I + +SI T +YI ++ GRL RP + G+P ++ +I Q YLD++ + +++ + ++ TH E+ ++ AG PY ++N SPRN YQC M KQ+MG Y+ R R D +Y PQ P+ ++KT + + +K P G N VA+ SY+ YD+EDA+V+N SL+RG GRC +YK+ L + + V+G + D LD DG+ G R+ +P + + S+Q Q V +T YK S Y+ + IS N D + I ++ R +IGDKFSSRHGQKGV L + D+P + GI PD + NPH PSRMTVG +IE +AGK L + TAF S V++ L Y Y+ G + G G +++ I G VYYQ+L+H+V DK R G +TRQP +GR GG+RLGEMERD L+ +GA+ L +R++ +SD V C C G S C C++ S +R+P + EL +MN+ +L ++
Sbjct: 35 KVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALP------IGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVEQDRKGAVGASVTS-STHEKKSRTNMIVKQGRFYLKHNTLSE----------DAPIAIIFKAMGVESDQEIVQMI--GTEEHVMAAFAPSLEE---CQKAQIFTQTQALKYIGNKVR---RQRMWGGPKKTKMEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVILAQGNNKV--DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQF-DVVKHMRQD--QITNGMVNAISTGNWSLKRFKMDRQG-----VTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPI---IKLAFNLGVEDVNLLCGEELSYPTVFL-VFLNGNILGVI--RNHQKLVSTFR-----------LMRRAGFINEFVSISTNVTDRCVYISSDGGRLCRPYIIVKNGQPAVKNKHIEELSQGYRNFEDFLHESLVEYLDVNEENDCSIALYEHMITKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMG---PMLDAETRKPIWRHSILDADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQPGQPQYRDVPIT-YKGSTDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK-VKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM-ISSDAFEVDVCGQCGLL-----------------------GYSGWCHYCKSSCHVS-------SLRIPYACKLLFQELQSMNIIPRLKLS 1128
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
Match: POLR2B (RNA polymerase II subunit B [Source:HGNC Symbol;Acc:HGNC:9188]) HSP 1 Score: 294.664 bits (753), Expect = 2.867e-83 Identity = 221/793 (27.87%), Postives = 371/793 (46.78%), Query Frame = 3
Query: 1143 IKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSV-THQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYV------------IDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARL-----IPGKSNMYAQYSSQ--------TEQVKVTKYKESQVGYVINISRNGSDYGATIC---IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQL 3350
+KEI ++ I + + Y L+TG+ G + + G+ + + + F +++ R + D K + R+L WG VCP TP+G GL+ + ++ + + S + LE + +++ E++ + AD ++ + +NG +G D ++ N +R + R +II +S I + I I+T++GR+ RP+ + + V+EYI T E+ + ++ + G + S TH E+ + A P+ ++N SPRN YQ M KQ+MG + R D + PQ PL +++ + ++ P G N IVAIASYT Y+ ED++++N ++++RG R Y+ Y I P R E G + ++D LD DGL G R+ I GK+ + + T++ T + S+ G V + + G C ++ R IGDKF+SRHGQKG ++ + D+P + +GI PD + NPH+IPSRMTVG +IE + GK++A + D+T F + V++ L Y Y G E Y+G+ GR + S+I +G YYQRL+H+V+DK R G + + RQP++GR GG+R GEMERD ++HGA L++R+ + SD V C+ C + R +++ C+ C N + S VR+P + EL +M++ ++
Sbjct: 305 LKEIRIYLAIKTRIISDGLKYSLATGNWGDVK-KAHQARAGVSQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISP-AAIADATK---IFVNGCWVGIHKD--PEQLMNTLRKLR----------RQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPKR----EECQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEA-SDPYQVHVCNLCGLMAIANTRT-----------------HTYECRGCRNKTQISL-------VRLPYACKLLFQELMSMSIAPRM 1050 HSP 2 Score: 52.7582 bits (125), Expect = 2.473e-6 Identity = 31/87 (35.63%), Postives = 47/87 (54.02%), Query Frame = 3
Query: 201 IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET-----VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVML 446
+ P E R NLTY + + +T TI E + +G IPIM+RS C L GL+ +L + +E + GGYFI+ G++ +L
Sbjct: 1 MMPNEARLRNLTYSAPLYVDITKTIIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVL 87
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001310.1 (pep scaffold:Pmarinus_7.0:GL477974:3852:23589:-1 gene:ENSPMAG00000001164.1 transcript:ENSPMAT00000001310.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 300.056 bits (767), Expect = 3.713e-87 Identity = 224/825 (27.15%), Postives = 384/825 (46.55%), Query Frame = 3
Query: 1041 GSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSV-THQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDE--------SVIGCGNKVFDDLDWDGLPPIGARL-----IPGKS--------NMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATIC---IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
G L +FR N L V + F+ + + ++ +K+ + + + Y L+TG+ G + G+ + + + F +++ R + D K + R+L WG VCP TP+G GL+ + ++ + + S + LE + +++ E++ + AD ++ + +NG +G D ++ N +R + R +II +S + + I I+T++GR+ RP+ + + V+EYI T E+ + ++ + G + S TH E+ + A P+ ++N SPRN YQ M KQ+MG + R D + PQ PL +++ + ++ P G N IVAIASYT Y+ ED++++N ++++RG R Y+ Y + ++E + G + +++ LD DGL G R+ I GK+ + Q T++ T + S+ G V + + G C ++ R IGDKF+SRHGQKG ++ + D+P + +G+ PD + NPH+IPSRMTVG +IE + GK++A + D+T F + V++ L Y Y G E Y+G+ GR M S+I MG YYQRL+H+V+DK R G + + RQP++GR GG+R GEMERD ++HGA L++R+ + SD V C+ C + R +++ C+ C N + S VRVP + EL +M++ ++ +
Sbjct: 98 GPLLAFLFRGMFKNLLKEVRMYAQKFIDRGKDFNLELAIKTRI-----VTDGLKYSLATGNWGD-QKKAHQARAGVSQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISP-AAIADATK---IFVNGCWVGIHKD--PEQLMNTLRKLR----------RQMDIIVSEVSMVRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKDREYNNYTWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDMEEVFERPTRDTCQGMRHAIYEKLDDDGLISPGIRVSGDDVIIGKTVTLPDNEDELEGQTKRFTKRDCSTFLRTSETGIVDQVMVTINQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLSPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDTVNVQKISNLLHEYGYHLRGNEVLYNGFTGRKMTSQIFMGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEV-SDPYQVHVCNLCGLMAIANTRT-----------------HTYECRGCRNKTQISL-------VRVPYACKLLFQELMSMSIAPRMMI 874
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009064.1 (pep scaffold:Pmarinus_7.0:GL481227:16752:24008:-1 gene:ENSPMAG00000008197.1 transcript:ENSPMAT00000009064.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 268.47 bits (685), Expect = 1.165e-79 Identity = 175/516 (33.91%), Postives = 254/516 (49.22%), Query Frame = 3
Query: 1908 SVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDD-----------LDWDGLPPIGARL----------IPGKSNMYAQYSSQTEQVKVT----KYKESQVGYV--INISRNGSD-YGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAPLDD 3371
+ TH E+ ++ AG PY ++N SPRN YQC M KQ+MG Y+ R R D +Y PQ P+ +++T + K P G N +A+ SY+ YD+EDA+V+N SL+RG GRC +YK+ L + + V+G + D LD DG+ G R+ +P + Q +S QV+ YK S YV + IS N D + + ++ R +IGDKFSSRHGQKGV L D+P + GI PD + NPH PSRMTVG ++E +AGK L + TAF S V + L + Y+ G + G G +++ I +G VYYQ+L+H+V DK R G +TRQP +GR GG+RLGEMERD L+ +GA+ L +R++ +SD V C C +S W C C S+ + +R+P + EL +MN+ +L +A ++
Sbjct: 2 NTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVQTRTIELIQFDKLPAGQNATLAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDRVMG---PMLDAATRKPIWRHKVLDSDGICSPGERVENKQVLVNKSMPSMTQTPIQGASAPTQVQYKDVPITYKGSTDSYVEKVMISSNNEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIASQEDVPFCDSGICPDIIMNPHGFPSRMTVGKLMELLAGKAGVLDGRFHYGTAFGGSR-VRDVCEDLIRHGYNYQGKDFVTSGITGEPLEAYIYIGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM-ISSDSFQVDVCGTCGLMAYS----------------------GWWCHYCR-------SSRQVSSLRIPYACKLLFQELQSMNIIPRLKLAKYNE 483
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008572.1 (pep scaffold:Pmarinus_7.0:GL476831:175452:211422:1 gene:ENSPMAG00000007718.1 transcript:ENSPMAT00000008572.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 251.906 bits (642), Expect = 4.600e-69 Identity = 190/669 (28.40%), Postives = 314/669 (46.94%), Query Frame = 3
Query: 1185 ILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFH----RGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVP------RTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDS-DVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVI----------GCGNKVFDDLDWDGLPPIGARL-----IPGKSNMYAQYSSQTEQVKV--------TKYKESQVGYV--INISRNGSDYGAT-ICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGR 2996
I + + Y L+TG+ G + G+ + + + + +++ R + RG+ K + R+L WG +CP TP+G GL+ + ++ + + S + LE + +++ E++ + AD ++ + +NG +G + DPE L+ R +II +S + + I I T++GR+ RP+ + + V+EYI T E+ I+ + G + + TH E+ + A P+ ++N SPRN YQ M KQ+MG + R D + PQ PL +++ + ++ P G N IVAIASYT Y+ ED++++N +++ERG R Y+ Y D R E V G + ++D LD DGL G R+ I GK+ + + V T + S+ G V + ++ N Y T I ++ R IGDKF+SRHGQKG ++ + D+P + +G+ PD + NPH+IPSRMT+G MIE I GK++A + D+T F + V++ L+ Y Y G E Y+G+ GR + S+I +G YYQRL+H+V+DK R G + + RQP++GR
Sbjct: 443 ITDGLKYSLATGNWGD-QKKAHQARAGVSQVLNRLTYASTLSHLRRLNSPCDRGS-----KLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISP-SAIADATK---IFVNGCWVG------------------IHKDPEQLMTTLRKLRRQMDIIVSEVSMVRDIREREIRIHTDAGRICRPLLIVEKQRLLLKRRHIEQLKEREYNGYSWQELVASGVVEYIDTLEEESAMIAMSPDDLQERGVAYCCTYTHCEVHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSIIMNRSAVERGYFRSVFYRSYT-DQESKRSYDQEEVFEKPTRETCQEGMRHAIYDKLDDDGLVSPGVRVSGDDVIIGKTASLPVTDDELDSVATRFVKRDTSTFLRSSETGIVDQVMVTLNQDGYKFTKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLSPDIIINPHAIPSRMTIGHMIECIQGKVSANKGEIGDATPFNDTVNVQKVSNLLQEYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGR 1082 HSP 2 Score: 51.6026 bits (122), Expect = 1.252e-6 Identity = 44/161 (27.33%), Postives = 77/161 (47.83%), Query Frame = 3
Query: 27 FTRDYIDSFNAFLKPGIRNILKHLKPTEFE---------LGTGERXXXXXXXXXXQKP-KCSIDNT-RNIYPWECRRMNLTYEGKVIMTMTLTINNSTP---------ETITET-VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVML 446
R +DSF+ F++ ++ I++ P E + + T R + E I + KP D + P E R NLTY + + +T ++ + +T +T +G IPIM+RS C L GL+ +L + +E + GGYF++ G++ +L
Sbjct: 36 LVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHASGQIETPPRYSVRFEQIYLSKPTHWERDGAPAPMMPNEARLRNLTYSAPLYVDITKSVTTAGGGEEQQQQRLQTHEKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFVINGSEKVL 196
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002293.1 (pep scaffold:Pmarinus_7.0:GL487410:805:8051:1 gene:ENSPMAG00000002089.1 transcript:ENSPMAT00000002293.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 60.4622 bits (145), Expect = 3.230e-10 Identity = 54/232 (23.28%), Postives = 98/232 (42.24%), Query Frame = 3
Query: 15 QIQDFTRDYIDSFNAFLKPGIRNILK-------------HLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKA 671
+++ + +IDSFN F+ I+ I+ +LK +GT + + S + TR + P ECR ++TY + + + T N +G +PIM+RS+ C L G + E+ K +E + GGYF+V+G + + Q +N +V VG T + + R + + + + + NT + IP+ +I+K
Sbjct: 35 KVKGLVKQHIDSFNYFINVEIKKIMMANEKITSDADPMWYLKYLNIYVGTPDVEE-------------SFNVTRPVAPHECRLRDMTYSAPITVDIEYTRGNQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEMAKLNECPLDPGGYFVVRGVEKVCLIQEQLSKNRIIVDIDRKGNVGASVTS-STHEKKSRTNLVMKQGRFYMKHNTLAE----------DIPVAIILKV 242
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Yeast
Match: RPA135 (RNA polymerase I second largest subunit A135 [Source:SGD;Acc:S000006214]) HSP 1 Score: 629.017 bits (1621), Expect = 0.000e+0 Identity = 371/1010 (36.73%), Postives = 568/1010 (56.24%), Query Frame = 3
Query: 195 RNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET--VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPH-QKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDF--PKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINV-KD-YREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKE---IVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV--IGCGN-----KVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA-----TICIK--LERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTA--FQTSDIVEEYMA-GLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFI 3143
R +YP E R+ +Y GK+++ + ++NN E + E G +P+M++SN CHL+ +S EL++H EE DE+GGYFIV G + ++R L+ RRN P+ +P G + + IR VR D+T+ L + ++ + K + +P+ +I+KAL + S E+F K+ F + + L ++ F R L+YLG KFR + ++LE G+ +D + +++ KD ++K+ ++L M+ KL+S V +C ++ D QE+L G L+ + + + YL N+ V++ +++ K+ + + + ++ I + M Y LSTG+L + ++Q +G ++ + INFYRFI++FR HRG+FF +K++T+R+LLPESWGF+CPVHTPDG+PCGLLNHF+ + + + S+ L + +FA CV ++GK++G++ + A+ +RY KV L P EI S T Q+PG+Y+F R+LRPV + + I +G FEQ Y++I+ T ++V TH E + ++ S A TP+ ++N SPRN+YQCQM KQ+MG + +RSDNKLY Q P+ ++ YD++ M P G+N +VA+ SYT YDM+DAM+IN ++ ERG G +YK +DL +R R D G GN + + LD DGLP IG + G + A + + K+ Y S+ Y+ ++ G + T+ IK + R IGDKFSSRHGQKGV S K T+D+P SE GI PD + NPH+ PSRMT+GM +E +AGK AL + DST F D +Y L Y+ G E Y G G + ++I +GVVYYQRLRH+V DK+QVR+ G ++++T QPVKGRK GGIR+GEMERD L+ HG +F LQDR+++ +SD C C S +
Sbjct: 119 RKVYPSESRQRLTSYRGKLLLKLKWSVNNGE-ENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGIIGNDVKDSF-LTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRISTQQSDVSRIPSILYSLGVAPAS----HTFAAGPSLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGL-PIDLEIGYVPPS-TRGQYPGLYLFGGHSRMLRPVRYLPLDKEDI--VGPFEQVYMNIAV----TPQEIQNNVH-THVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDP-ICAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLN-SSDYTQASVCRECGSIL 1111
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Yeast
Match: RET1 (Second-largest subunit of RNA polymerase III; RNA polymerase III is responsible for the transcription of tRNA and 5S RNA genes, and other low molecular weight RNAs [Source:SGD;Acc:S000005733]) HSP 1 Score: 352.058 bits (902), Expect = 8.055e-104 Identity = 312/1196 (26.09%), Postives = 531/1196 (44.40%), Query Frame = 3
Query: 15 QIQDFTRDYIDSFNAFLKPGIRNILK-------------HLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIY--PWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREF--LKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKD----SKRILNPMHYLLSTGSLG----QITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKK-----SVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISI-TAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYI------------------GTFEQTYLDISCQGGNTMSGGDSDV--SVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRC-------AIYKHYVIDLTPDRG--RLDESVIGCGNKVF--DDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKV---------TKYKESQVGY-----------VINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQL 3350
+++ + ++DSFN F+ ++ I+K +LK + +G K S +T++ P ECR ++TY + + + T + +G +PIM+RSN C L+ ++ K +E + GGYFIV G + ++ Q +N +V+ + + + R + T K++ + N+ + +IP+ +++KA S LE+ Q D S ++ + + S + T LEY+G+K + K+ I +EA + ++ + D+REK I +M ++ + + + D + + + G L +F + + + K+ + K KP + + + S I + ++ +STG+ ++ GV T ++ +I+ R F K S R L P +G +C TP+G CGL+ + ++ T + E +KK V ++ I S + + V LNG L+G I RF +F R+ R T + + ISI + + ++I T+ GR+ RP+ + G+ ++ I G E YLD++ + + ++ + D+ S+TH E+ ++ AG PY ++N SPRN YQC M KQ++G Y+ R D LY PQ P+ ++KT + + K P G N VA+ SY+ YD+EDA+V+N +S++RG GRC + K Y G R+DE+ G+ ++ L DGL +G ++ G+ +Y S T T+Y+E+ V Y ++++S N + ++ R ++GDKFSSRHGQKGV + ++ D+P ++ GIVPD + NPH PSRMTVG MIE I+GK L+ T F S + E+ L ++ G + Y G G + + I G +YYQ+L+H+V DK R G +TRQP +GR GG+RLGEMERD ++++GA+ L +R++ +SD V C C G S C C+ S EN++++ +P + EL +MN+ +L
Sbjct: 53 KVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVG-----------------KKSSSSTKDYLTPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAE----------EIPIAIVLKACGILSDLEIMQLV--CGNDSSYQDIFAVNLEESSKLD--IYTQQQALEYIGAKVKTMRRQKLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFE----DLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFKMERAGV---------THVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDE--------EEPIKKLCYVLGVEDITLIDSASLHLNY-GVYLNGTLIGSI--RFPTKFVTQFRHL-----------RRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVE--YLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDEN----GDPIWQHQSLGPDGLGEVGMKVQSGQ--IYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQAL-IKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSKL-EDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLM-ISSDAFEVDVCDKCGLM-----------------------GYSGWCTTCK-------SAENIIKMTIPYAAKLLFQELLSMNIAPRL 1141
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Yeast
Match: RPB2 (RNA polymerase II second largest subunit B150; part of central core; similar to bacterial beta subunit [Source:SGD;Acc:S000005677]) HSP 1 Score: 298.901 bits (764), Expect = 6.103e-85 Identity = 293/1190 (24.62%), Postives = 500/1190 (42.02%), Query Frame = 3
Query: 192 TRNIYPWECRRMNLTYEGKVIMTMTLTINNSTP--------ETITET-----------VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDET----TSEIKLFWRDNTCPDLQLQIGKKYFQ--IPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLT-MMFNKFSTRERQFTTNVSCLEYLGSKF-------------------REFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFI--DMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNI-------------------------------------------MFGEPVIEYIGTFEQTYLDISCQ-------GGNTMSGGDSD-----------VSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYV-------IDLT-----PDRGRLDESVIGCGNKVFDDLDWDGLPPIGAR-------------LIPGKSNMYAQYSSQTEQVKVTKYKESQVGYV----INISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQL 3350
T +YP E R NLTY + + + + E I E +G +PIM+RS C+L + +L K E ++GGYFI+ G++ +L + Q R +VQ +K H A IR + + T ++KL+ R+ + ++ Y + IP+ +I +AL E+ + D+ ++E+L + + F ++R+ + L+++G + +EFL L E+ + F Y M+ +L D+ Q+ D + + G L Q+F+ ++ R ++ + + + +K + ++K I + + Y L+TG+ G+ K + ++ +N Y + + R I D K + R+L WG VCP TP G N + + + + FL + ME + V +NG G R +R + D V +I K + I FT++GR+ RP++ + + E ++EYI E+ + I+ Q N + D D + TH E+ + A P+ ++N SPRN YQ M KQ+MG + R D PQ PL ++ + ++ P G N IVAIA Y+ Y+ ED+M++N +S++RG+ R ++ Y+ + +T P R + + + +D LD DGL G R + P + + + + +++ T + ++ G V + +++G + + ++ + IGDKF+SRHGQKG + + D+P + +GIVPD + NPH+IPSRMTV +IE + K+AALS D++ F T VE LR + Y G+E Y+G+ G+ + ++I G YYQRLRH+V+DK R G + +TRQPV+GR GG+R GEMERD +++HGA L++R+++ SD V C C V+ ++ HNQ + CK C+N I ++ ++ +P + EL MN+ +L
Sbjct: 109 THALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVL--IAQERSAGNIVQV--FKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSAR-TIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRE-----TALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGY-----------------MINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAI-----NAKTITSGLKYALATGNWGEQK----KAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE----TPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGV--HRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKI----------FTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQR----TNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKF-VKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPF-TDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEA-SDAFRVHICGICGLMT------VIAKLN-HNQ---------FECKGCDNKI-------DIYQIHIPYAAKLLFQELMAMNITPRL 1216
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Match: EDO33368 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7SSE2]) HSP 1 Score: 533.102 bits (1372), Expect = 3.340e-173 Identity = 323/970 (33.30%), Postives = 497/970 (51.24%), Query Frame = 3
Query: 6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQK-VGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIV-EVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTP-DRGRLDESVIGCGN-----KVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTS--DIVEEYMAGLRSYKYDGF-GYERFYDGYRGRLMDSE 2882
+K+ IQD R +I+SFN L+ G+ P + +CR TY K+ +T+ I+N ++T+ + IP+M++SN C L LS +EL++ +EE E GGYFIV G + ++R L+ RRN+P+ +P K G+ T + +R V+ D++ + L + ++ + + K+ + +P+ I+KAL N + ++++ KA+E+ + + + MM + +E S LEY+G +FR +++P W ++ + I + I I++ +K+ L+++M KL++ +KCC ES D+ QE+L G L+ V + M Y L+TG+L + ++Q +G ++ D +N++RF+++FR HRGAFF M+++++R+LLPE+WGF+CPVHTPDG PCGLLNH + V + R L M D + V+++G++LG + A AN +R KV + VP+ EI I+ A+Q+PG++IF++ R++RPV N+ + IE IG+FEQ Y+DI+ G TH EL ++ S A TPY ++N SPRN+YQCQM KQ+MG ++ ++R+DNKLY PQ PL R ++D + M + PLG N IVA+ SYT YDMEDAMV+N S ERG +IYK ++L P + R S + G ++ LD DG PP+GA L G Y+ + T + V KY + G + +RN IGDKFSSRHGQKG+ S K ++P SE G+ PD +FNPH PSRMT+GMMIE +AGK AAL+ D+T F S D +Y L +G G G+RG S+
Sbjct: 30 QKQSIQDLVRPHIESFNFMLEEGL-------------------------------PLAA----------QCREKGSTYCSKLQVTLQWKIDNVPQGSVTKVIAAIPLMVKSNNCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIRMLILPRRNYPLAIIRPSWKGRGSFYTEYGVQMRSVKGDQSAVNMTLHYLNDGNVMMCIAYRKELYYVPVVFILKALMNVTDQHIYRELIKAEENNTFWKDCVAMMLR--TAQEEGAVNQKSVLEYIGLRFRVKMRLPDWFSDEAVAQYLIQQCICIHLDTNADKFNLLILMTRKLYALALEKCCAESADSPMNQEVLLGGHLYLMVLK-------------------------------------------MEYFLATGNLISKSGLALQQISGFTVVADRLNYFRFLSHFRCIHRGAFFSQMRTTSVRKLLPEAWGFLCPVHTPDGAPCGLLNHLAAGCQVVNVVPLVAH---MLRLLCTMGMIPVDAPVPGDYKNYYPVVMDGRVLGSVDRDLAPTLANRLRIMKVLGEER--VPQFLEICLVPITKVASQYPGLFIFSSPARMMRPVLNLAVNK--IEMIGSFEQVYMDIAIVQEELHEG-----VTTHMELKPTAMLSAIASMTPYSDFNQSPRNMYQCQMGKQTMGTPVHAFQHRTDNKLYRIQTPQSPLVRPASHDFYIMDEYPLGTNAIVAVISYTGYDMEDAMVLNKASYERGFAHGSIYKAQFVNLEPKSQDRTSSSNLQFGTLPDDPRIDGRLDADGFPPLGAHLSTGDP-YYSYIDTNTGEAVVKKYSNLEAGIID-----------------DRNPIIGDKFSSRHGQKGICSQKWPVENMPFSESGMTPDIIFNPHGFPSRMTIGMMIESMAGKSAALNGHVYDATPFTFSEDDSAIDYFGKLLVKWVEGINGLVLEVQGFRGWFNQSQ 883
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Match: EDO36897 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7SHD8]) HSP 1 Score: 316.235 bits (809), Expect = 1.189e-90 Identity = 289/1136 (25.44%), Postives = 508/1136 (44.72%), Query Frame = 3
Query: 201 IYPWECRRMNLTYEGK--VIMTMTLTINNSTPETITET---VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIR-CVRDDETTSEIKLFW----RDNTCPDLQLQIGKKYF--------QIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIA--INVKDYRE--KYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVP------RTTEIICKNISITAA-QFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSV-THQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDE----------SVIGCGNKVFDDLDWDGLPPIGARL-----IPGKSNMYAQYSSQTEQVK--------VTKYKESQVGYV----INISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
+ P E R NLTY V +T T +N P+ T + +G IPIM+RS C L+GL +L + +E + GGYFI+ G++ +L + N V K K + A IR C+ + ++ W + + IG++ +IP+ ++ +AL + ++ + ED ++E++ ++ + Q NV+ L ++GS R ++ + + + + + V D+ E K + MV +L + + D + + G L +FR N + V + F+ + + I+ +K K I + + Y L+TG+ G + G+ + + + F +++ R + + K + R+L WG +CP TP+G GL+ + ++ + + S + +E + +++ E+ S + S I V NG +G + DP+ L+ R +II +S+ + I I++++GR+ RP+ + + ++EYI E+ + ++ + G + S TH E+ + A P+ ++N SPRN YQ M KQ+MG + R D + PQ PL +++ + ++ P G N IVAIASYT Y+ ED++++N ++++RG+ R Y+ Y D +G LD+ +V G N +D LD DGL G R+ I GK+ + E T + S+ G V + I++ G + I ++ R IGDKF+SRHGQKG + + D+P + +G+ PD + NPH+IPSRMT+G +IE + GK++A + D+T F + V++ L Y Y G E Y G+ GR +++++ +G YYQRL+H+V+DK R G + +TRQP++GR GG+R GEMERD +++HG+ L +R+ + SD C+ C + R N++ C+ C+N + S R+R+P + EL +M++ ++ V
Sbjct: 112 MMPNEARLRNLTYSAPFYVDITKTRIKDNEEPQVTTHSKMFIGKIPIMLRSTYCLLNGLLDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSKKDSKYS-----YTAEIRSCL--EHSSRPTSTMWVSMLAKGSSGGRRSAIGQRIVGSLPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDQEMMEMVKPSLDEAFVIQEQ---NVA-LNFIGS--RGARPGVTKERRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRMYAQKFIDRGKDFNIELALKP-----KVITDGLRYSLATGNWGD-QKKAHQARAGVSQVLNRLTFASTLSHLRRLN-SPIGREGKLAKPRQLHNTHWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFMEEWTMENLEEIT--PSAINTSTKIFV--NGCWVG------------------IHRDPDQLMSTLRKLRRRMDIIVSEVSMVRDFREREIRIYSDAGRICRPLLIVENQKLLLKKNHIDQLKEREYNEYSWQELVANGIVEYIDVNEEETVMVAMTPDELVEKGQAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIVAIASYTGYNQEDSVIMNASAIDRGLYRSVFYRSYR-DQESKKG-LDQEETFEKPTRDAVQGMRNASYDKLDEDGLIAPGIRVSGDDVIVGKTVTLPDNDDELEGTARKYSKKDASTFLRPSETGIVDQVMVTINQEGFKF-TKIKVRSVRVPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGLSPDVIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISQLLNDYGYHLRGNEVLYSGFTGRKLNTQVFLGPTYYQRLKHMVDDKIHSRARGPLQILTRQPMEGRSRDGGLRFGEMERDCMIAHGSAQFLNERLFEV-SDPYSCHVCNLCGLIAIANLR-----------------NNTFECRGCKNKTQVS-------RIRMPYAAKLLFQELMSMSIAPRMMV 1177
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Match: EDO30235 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7T1C9]) HSP 1 Score: 177.563 bits (449), Expect = 5.432e-51 Identity = 93/171 (54.39%), Postives = 116/171 (67.84%), Query Frame = 3
Query: 2517 ATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRL 3020
A I ++++RN IGDKFSSRHGQKG+ S K ++P SE G PD +FNPH PSRMT+GMMIE +AGK AAL+ D+T F S+ ++ + L YD FG ER Y G GR +++I MGVVYYQRLRH+V DK+QVRT G ID +T QPV+GRK GGIR
Sbjct: 16 ACIKLRIQRNPIIGDKFSSRHGQKGICSQKWPVKNMPFSESG-TPDIIFNPHGFPSRMTIGMMIESMAGKSAALNGHVYDATPFTFSEDDSAIDYFGKLLVKSGYDYFGTERLYSGIDGREFEADIFMGVVYYQRLRHMVADKFQVRTTGPIDALTHQPVQGRKRQGGIRF 185
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Match: EDO30236 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUS3]) HSP 1 Score: 107.842 bits (268), Expect = 3.399e-28 Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 3
Query: 2877 SEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRI 3083
S+I MGVVYYQRLRH+V DK+QVRT G ID +T QPV+GRK GGIR GEMERD LL+HG +F LQDR+
Sbjct: 1 SDIFMGVVYYQRLRHMVADKFQVRTTGPIDALTHQPVQGRKRQGGIRFGEMERDALLAHGTSFLLQDRL 69
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Match: EDO44798 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUS3]) HSP 1 Score: 107.842 bits (268), Expect = 3.399e-28 Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 3
Query: 2877 SEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRI 3083
S+I MGVVYYQRLRH+V DK+QVRT G ID +T QPV+GRK GGIR GEMERD LL+HG +F LQDR+
Sbjct: 1 SDIFMGVVYYQRLRHMVADKFQVRTTGPIDALTHQPVQGRKRQGGIRFGEMERDALLAHGTSFLLQDRL 69
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
Match: polr1b (RNA polymerase I subunit B [Source:NCBI gene;Acc:101159846]) HSP 1 Score: 755.362 bits (1949), Expect = 0.000e+0 Identity = 438/1139 (38.45%), Postives = 656/1139 (57.59%), Query Frame = 3
Query: 18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVD-----RNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVI----GCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGAT----ICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVP--WHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
IQD T+ +I+SF+ + G+ ++ + P EF + ++I + I P K SI ++P ECR +Y+GK++ ++ IN I +++G +PIM++S LC+LHG+S +EL+KHHEE +E+GGYFIV G + ++R L+ RRN+P+ +P K G T + +RCV+DD T + L + +N L K+ F +PL +KAL + + +++Q+ K +ED S + + E TT L YLG +FR L +P W TN + ++E I I++K EK+ L+ +M KL S +C +E+ D++ QE+LTPG L+ + + +L +V R K+F S + + +++ +K P YLL+TG+L T G+ QN+GL ++ D +NF R++++FR HRGA F M+++++R+LLPESWGF+CPVHTPDG PCGL+NH + + V A+++ + +L L + ++ ++F+D C V+L+G ++G++ A + +R KV E VP TEI+ + A+ +PG+++FT R++RPV N+ G+ E+IGTFEQ Y ++ +G THQEL S+ S A F P+ ++N SPRN+YQCQM KQ+MG+ +S RSDNKLY PQ L R YD +N+ P G N IVA+ SYT YDMEDAM++N +S ERG +IYK ++DL D+ R +++V+ KV D LD DGLP +G+ L G Y+ + T Q V YK + V NI +D G+ ICI ++ RN IGDKF+SRHGQKG+ S D+P +E G+ PD LFNPH PSRMT+GM+IE +AGK AAL +S D+T F S+ ++ + LR+ Y+ +G ER Y G GR ++++I +GVVYYQRLRH+V DK+QVRT G D +T QPV GR + GGIR GEMERD LL+HG++F L DR+ +C SD+ + C +C S + P+LE+ P W +A C LC ++++ V VP V R+F+ EL MN+KV+L V
Sbjct: 35 IQDLTKAHIESFDQAVTDGLIRAVQAIPPLEF-MSKNDQISLSFVEAAIYSPAVAKGSICRETKVFPAECRGRRCSYKGKLVADISWAINGVPKGIIKQSLGQVPIMVKSRLCNLHGMSPKELVKHHEEAEEMGGYFIVNGIEKVVRMLIMPRRNYPIAMSRPKWKSRGQGYTQYGVSMRCVKDDHTAINLNLHYLENGTVMLNFIYQKELFFLPLGFALKALVDFTDFQIYQELIKGREDNSFYKTCVSEMLRV-VMEEGCTTRSKVLTYLGERFRVKLNLPEWYTNEQCANILLNECICIHLKSDTEKFYLLCLMSRKLFSHAKQECMEENPDSIMCQEVLTPGQLYLMFLKERMTAWLVSVKLSFDKRGSKVFARGWSTENVIKMLNMGSDVTK----PFEYLLATGNLNSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTASCEVVAASSPTTSLPALLCSLGVTPVDGTPAQAFSD-----CYPVVLDGSVVGWVETDLAPAVVDAMRRFKVLR--ERKVPPWTEIVLVPKTGKASLYPGLFLFTTPCRMMRPVQNLALGKQ--EFIGTFEQLYTNVGILEEEIEAG-----VTTHQELFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLHSFMDRSDNKLYRLQTPQSALVRPYMYDHYNLDNYPSGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSIYKTELVDLA-DKVRGEDAVVFGTKPGDPKVNDKLDADGLPRVGSVLQYGDP-FYSYINLNTGQSCVHFYKSQEACVVDNIKICSNDSGSGQFKRICITTRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSAALHGRSHDATPFTFSEENSALDHFGELLRAGGYNYYGTERLYSGVSGRELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNIQGGIRFGEMERDALLAHGSSFLLHDRLFNC-SDRSEAQMCVDCGSLL----SPLLEKPPPCW-----SAMRHRKTLCTLCGK-------SDSINAVSVPYVFRYFVAELAAMNIKVKLEV 1134
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
Match: polr3b (RNA polymerase III subunit B [Source:NCBI gene;Acc:101174911]) HSP 1 Score: 356.295 bits (913), Expect = 1.580e-104 Identity = 324/1185 (27.34%), Postives = 527/1185 (44.47%), Query Frame = 3
Query: 15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLT------INNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIW----LTNLEAGRRFIDEYIAINVK----DYREKYELILVMVLKL-----HSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQI--KSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISI-TAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIE--YIGTFEQ--------------TYLDISCQGGNTMSGGDSDVS--VTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDD-----------LDWDGLPPIGARL----------IPGKSNMYAQYSSQTEQVKVTK----YKESQVGYV--INISRNGSD-YGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
Q++ + +IDSFN F+ I+ I+K + + +K + + + + S + TR + P ECR ++TY + + + T I N+ P +G +PIM+RS+ C L G + E K +E + GGYFIVKG + ++ Q +N +V VG T + + R + + + + R NT + P+ +I K + +S E+ Q E+ + + ++ Q T L +LG+K R + +W T +E R + I +V ++R K + VMV ++ + V+D+ D + + G L +F + + + + + K ++VK +D +I N M +STG+ +Q +T ++ +I+ R F K S R L P WG +CP TP+G CGL+ + ++ T + ++ L V ++N + + + S F+ V LNG +LG I NH + F + R I + +SI T +YI ++ GRL RP + G+P+++ +I Q YLD++ + ++ + ++ TH E+ ++ AG PY ++N SPRN YQC M KQ+MG Y+ R R D +Y PQ P+ ++KT + + +K P G N VA+ SY+ YD+EDA+V+N SL+RG GRC +YK+ L + + V+G + D LD DG+ G ++ +P + + S+Q Q + + YK S Y+ + IS N D + I ++ R +IGDKFSSRHGQKGV L + D+P + G+ PD + NPH PSRMTVG +IE +AGK L + TAF S V++ L Y Y+ G + G G +++ I G VYYQ+L+H+V DK R G +TRQP +GR GG+RLGEMERD L+ +GA+ L +R++ +SD V C C G S C C++ S +++P + EL +MN+ +L ++
Sbjct: 41 QVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALP------IGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQDRKGTVGASVTS-STHEKKSRTNIIVKQGRFYLRHNTLSE----------DAPIAIIFKGMGVESDQEIVQMI--GTEEHVMANFAPSLE---ECQKAQIFTQTQALRFLGNKVR---RQRMWGGPKKTKMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVILAQGENKVDDR------DYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQF-DVVKHMRQD--QITNGMVNAISTGNWSLKRFKMDRQG-----VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPI---IKLALNLGVEDVNLLCGEELSYPSVFL-VFLNGNILGVI--------RNHHKLVSTF-----RLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKGQPMVKSKHIEDLSQGYRNFEDFLHEGLVEYLDVNEENDCQIALYEHMINKETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNTKCTLRRYTNQTFDKVMG---PMLDAATRKPLWRHNILDADGICCPGEKVENKQILVNKSMPTVTQTPLEGSAQPGQPQYKEVPISYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGVCPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK-VKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM-ISSDAFEVDVCGQCGLL-----------------------GYSGWCHYCKSSCHVS-------SLKIPYACKLLFQELQSMNIIPRLKLS 1134
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
Match: polr3b (RNA polymerase III subunit B [Source:NCBI gene;Acc:101174911]) HSP 1 Score: 354.369 bits (908), Expect = 6.924e-104 Identity = 323/1185 (27.26%), Postives = 527/1185 (44.47%), Query Frame = 3
Query: 15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLT------INNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIW----LTNLEAGRRFIDEYIAINVK----DYREKYELILVMVLKL-----HSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQI--KSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISI-TAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIE--YIGTFEQ--------------TYLDISCQGGNTMSGGDSDVS--VTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDD-----------LDWDGLPPIGARL----------IPGKSNMYAQYSSQTEQVKVTK----YKESQVGYV--INISRNGSD-YGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
+++ + +IDSFN F+ I+ I+K + + +K + + + + S + TR + P ECR ++TY + + + T I N+ P +G +PIM+RS+ C L G + E K +E + GGYFIVKG + ++ Q +N +V VG T + + R + + + + R NT + P+ +I K + +S E+ Q E+ + + ++ Q T L +LG+K R + +W T +E R + I +V ++R K + VMV ++ + V+D+ D + + G L +F + + + + + K ++VK +D +I N M +STG+ +Q +T ++ +I+ R F K S R L P WG +CP TP+G CGL+ + ++ T + ++ L V ++N + + + S F+ V LNG +LG I NH + F + R I + +SI T +YI ++ GRL RP + G+P+++ +I Q YLD++ + ++ + ++ TH E+ ++ AG PY ++N SPRN YQC M KQ+MG Y+ R R D +Y PQ P+ ++KT + + +K P G N VA+ SY+ YD+EDA+V+N SL+RG GRC +YK+ L + + V+G + D LD DG+ G ++ +P + + S+Q Q + + YK S Y+ + IS N D + I ++ R +IGDKFSSRHGQKGV L + D+P + G+ PD + NPH PSRMTVG +IE +AGK L + TAF S V++ L Y Y+ G + G G +++ I G VYYQ+L+H+V DK R G +TRQP +GR GG+RLGEMERD L+ +GA+ L +R++ +SD V C C G S C C++ S +++P + EL +MN+ +L ++
Sbjct: 35 KVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALP------IGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQDRKGTVGASVTS-STHEKKSRTNIIVKQGRFYLRHNTLSE----------DAPIAIIFKGMGVESDQEIVQMI--GTEEHVMANFAPSLE---ECQKAQIFTQTQALRFLGNKVR---RQRMWGGPKKTKMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVILAQGENKVDDR------DYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQF-DVVKHMRQD--QITNGMVNAISTGNWSLKRFKMDRQG-----VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPI---IKLALNLGVEDVNLLCGEELSYPSVFL-VFLNGNILGVI--------RNHHKLVSTF-----RLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKGQPMVKSKHIEDLSQGYRNFEDFLHEGLVEYLDVNEENDCQIALYEHMINKETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNTKCTLRRYTNQTFDKVMG---PMLDAATRKPLWRHNILDADGICCPGEKVENKQILVNKSMPTVTQTPLEGSAQPGQPQYKEVPISYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGVCPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK-VKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM-ISSDAFEVDVCGQCGLL-----------------------GYSGWCHYCKSSCHVS-------SLKIPYACKLLFQELQSMNIIPRLKLS 1128
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
Match: polr2b (RNA polymerase II subunit B [Source:NCBI gene;Acc:101166780]) HSP 1 Score: 298.901 bits (764), Expect = 3.357e-84 Identity = 225/827 (27.21%), Postives = 384/827 (46.43%), Query Frame = 3
Query: 1041 GSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSV-THQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYV------------IDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARL-----IPGKSNMYAQYSSQ--------TEQVKVTKYKESQVGYVINISRNGSDYGATIC---IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQL 3350
G L +FR N L + + F+ + + ++ +K+ I + + Y L+TG+ G + + G+ + + + F +++ R + D K + R+L WG VCP TP+G GL+ + ++ + + S + LE + +++ E++ + AD ++ + +NG +G D ++ N +R + R +II +S I + I I+T++GR+ RP+ + + V+EYI T E+ + ++ + G + S TH E+ + A P+ ++N SPRN YQ M KQ+MG + R D + PQ PL +++ + ++ P G N IVAIASYT Y+ ED++++N ++++RG R Y+ Y I P R E+ G + ++D LD DGL G R+ I GK+ + + T++ T + S+ G V + + G C ++ R IGDKF+SRHGQKG ++ + D+P + +GI PD + NPH+IPSRMTVG +IE + GK++A + D+T F + V++ L Y Y G E Y+G+ GR + S+I +G YYQRL+H+V+DK R G + + RQP++GR GG+R GEMERD ++HGA L++R+ + SD V C+ C + R +++ C+ C N + S +R+P + EL +M++ ++
Sbjct: 397 GPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRI-----ISDGLKYSLATGNWGDVK-KAHQARAGVSQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISP-AAIADATK---IFVNGCWVGIHKD--PEQLMNTLRKLR----------RQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTR----ETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNKRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEA-SDPYQVHVCNLCGLMAIANTRT-----------------HTYECRGCRNKTQISL-------IRMPYACKLLFQELMSMSIAPRM 1171 HSP 2 Score: 54.299 bits (129), Expect = 9.043e-7 Identity = 46/156 (29.49%), Postives = 76/156 (48.72%), Query Frame = 3
Query: 27 FTRDYIDSFNAFLKPGIRNILKHLKP----TEFELGTGE-----RXXXXXXXXXXQKP-KCSIDNTRN-IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET-----VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVML 446
R +DSF+ F++ ++ I++ P E + +GE R + E I + KP D + + P E R NLTY + + +T TI + + +G IPIM+RS C L GL+ +L + +E + GGYFI+ G++ +L
Sbjct: 39 LVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRFLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVL 194
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000009943.1 (SMESG000009943.1) HSP 1 Score: 2156.72 bits (5587), Expect = 0.000e+0 Identity = 1045/1045 (100.00%), Postives = 1045/1045 (100.00%), Query Frame = 3
Query: 255 MTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAPLDDEAVLSD 3389
MTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVQASAASSDQDDSLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAPLDDEAVLSD
Sbjct: 1 MTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVQASAASSDQDDSLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAPLDDEAVLSD 1045
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000009943.1 (SMESG000009943.1) HSP 1 Score: 2153.64 bits (5579), Expect = 0.000e+0 Identity = 1043/1043 (100.00%), Postives = 1043/1043 (100.00%), Query Frame = 3
Query: 261 MTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAPLDDEAVLSD 3389
MTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVQASAASSDQDDSLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAPLDDEAVLSD
Sbjct: 1 MTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVQASAASSDQDDSLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAPLDDEAVLSD 1043
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000055060.1 (SMESG000055060.1) HSP 1 Score: 323.553 bits (828), Expect = 5.842e-93 Identity = 302/1202 (25.12%), Postives = 525/1202 (43.68%), Query Frame = 3
Query: 42 IDSFNAFLKPGIRNILKHLKPTEFE------LGTG--ERXXXXXXXXXXQKPKCSIDNT---RNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET----VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDE----TTSEIKLFWRDN-----TCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDF--------------PKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVP------RTTEIICKNISITAA-QFPGIYIFTNSGRLLRPVYNIMFGE---------------------------PVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV--------IGCGNKVFDDLDWDGL-----------PPIGARLIPGKSNMYAQYSSQTEQVK---VTKYKESQVGYVINISRNGSDYGATICIKLERNT---DIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
+DS++ F+ ++ I+ + E E LG R + I +++P C + + ++P E R NLTY ++++ + +N S ET ET +G IP+M++S C L ++ +L + +E + GGYFIV G++ ++ + Q R V P + D+ ++ I+ + +D +T + L + T + Q+ IPL ++ +A+ S ++ + P E F I + T + F + E G+ ++ +K + E ++N K Y Y MV KL K + D + + I G L +F+ N + N + +NS+ ++S+ I + Y L+TG+ G + G+ + + + F +++ R + D K + R+L WG VCP TP+G GL+ + S+ T + + S + LE + + LN I A S+ +++NG +G + DP LV R+ ++I +SI I I ++ GRL RP+ + G VIEY+ T E+ I+ + G + TH E+ + A P+ ++N SPRN YQ M KQ++G+ + R D + Q PLT S+ ++ P G N IVAI++YT Y+ ED++++N +++ERG+ R Y+ V + G E++ +G + + LD DG+ P IG + S+ + + S ++ +K ++++ G+V R + G+T+ R T IGDKF+SRHGQKG +K + D+P + +GI PD + NPH+IPSRMT+G +IE + GK+ L T ++E+Y + Y+ Y+G+ GR +++ + G YYQRL+H+V+DK R G + +TRQP++GR GG+R GEMERD ++HGA+ L++R+ DC SD IV C +C + + + + + CK+C N+++V++P + + EL +M++K+ L+V
Sbjct: 32 LDSYDEFITSSVQQIVNEFQTVEIEGETKYNLGNDIPNRCEYKFGQISLRQP-CHYEPSGICTRLFPNEARLRNLTYSSELLIDYEMNVNKSNGETRKETEQVKIGEIPMMLKSTYCVLGNMTDIDLTQLNECPLDPGGYFIVNGSEKVI--IAQERMATNTVFVFPSK----DKYLYKCSIKSMVEDSFRSSSTFGVHLLAKGGSGKRTTGSKIVCQLPFIKEDIPLVIVFRAMGFVSERDVIERVIYDDKDMDMLDMLQPSIDEAFVIQDEQTAL---------NFIGSRGVKE--GTPIQQRIKFAKDILTKETLPHIGLTEASMNKKAYFLGY-----MVHKLLETSLGKRAPDDRDHMGNKRIDLAGPLLATLFKGFFKNLAKELKLNTTRMIDRNSDFHSSHAIRSNI-----ITDGFKYSLATGNWGD-QKKASETRKGVSQVLNRLTFVSALSHLRRTNSPTGR-DSKIAKPRQLHNTQWGMVCPAETPEGHAVGLVKNLSLMTNISVGSKSRPIIEFLEEW---GMENLNDISPSA-VSEGSKIIVNGSWIG------------------IHRDPNQLVKTLKKLKRSADVIVSEVSINQDFNNKEIKINSDGGRLCRPLIVVEDGSLSIKKSHIQRLGSLDNYQYGWKELVHGGVIEYLDTMEEENAMIAMVPSDISKGSQYCKTHTHCEIHPSMILGVCASIIPFPDHNQSPRNCYQSAMGKQALGFYTSNFHARMDTLAHVLYYSQKPLTASRAMTYLKYRELPAGVNAIVAISTYTGYNQEDSIILNESAIERGLFRSDFYR-TVSETVNHSGHQVEAIEKPNSQETLGMREREYTKLDDDGIIRVGSCVYGGDPLIGKTVTIPPSDEFTETSKSSDLMKRDCSVFMRKTEKGFVDKALRTTDNNGSTMVKVTMRTTKIPQIGDKFASRHGQKGTCGIKYRHEDMPFTAEGISPDIIINPHAIPSRMTIGHLIETLLGKVGQLEENWAMQHLLMTRLMLEKY---VDYYQNVIMNPPVLYNGFTGRKINTTVFFGPTYYQRLKHMVDDKIHSRARGPVTMMTRQPLEGRAKDGGLRFGEMERDCQIAHGASLFLKERLFDC-SDPYIVYICRHCGEIVIANPKTAV-----------------FTCKVCRKI-------PNVVKVKIPYAAKLLMQELKSMHIKLILNV 1152
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000067331.1 (SMESG000067331.1) HSP 1 Score: 322.013 bits (824), Expect = 2.017e-92 Identity = 299/1199 (24.94%), Postives = 526/1199 (43.87%), Query Frame = 3
Query: 21 QDFTRDYIDSFNAFLKPGIRNILKHLKPTEFE----LGTGERXXXXXXXXXXQ-----KPKCSIDNTRN-IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET-----VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTC-----PDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNK-FSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIA-INVKDYRE--KYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVP------RTTEIICKNISITAAQFPG--IYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV-----------IGCGNKVFDDLDWDGLPPIGAR-----LIPGKSNMYAQYSSQTEQVKVTKYK---------ESQVGYVINISRNGSDYGATIC---IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
+ R +DSF+ FL I+ I++ E + G+G E Q D T + + P + R NLTY V + +T N + + IT+T +G IPIM+RS C L +S +L + +E + GGYFI+ G++ ++ + Q R V P + + + ++ + + + L + + P + + +IP+ ++ +A+ S ++ + +D + E+L ++ F ++ N Y+GS+ + +P+ A E + I ++R K + MV +L S + + D + + + G L +F+ N + N + K +E+ S I + + Y L+TG+ G + G+ + + + F +++ R + + D K R+L WG VCP TP+G GL+ + ++ + + S + LE + +S+ E+ + A+ ++ + +NG +G + DP+ L+ R+ +++ +SI + G I I+T+SGR+ RP+ + + + V+EYI T E+ I+ + + TH E+ + A P+ ++N SPRN YQ M KQ+MG + R D + Q PLT ++ + ++ P G N IVAIASYT Y+ ED++++N +++ERG+ R Y+ ++ + R E V +G + + LD DG+ G R ++ GK+ E V +K+K +++ G V + ++ G+ C I+ + IGDKF+SRHGQKG ++ + D+P + +GI PD + NPH+IPSRMTVG +IE + GK++A + D+T F + V + L Y Y+ G E Y+GY GR M + + G YYQRL+H+V+DK R G + +TRQP++GR GG+R GEMERD ++HGA L++R++D SD + C C + + + NQT ++C C S ++R+P + EL +M++ ++L V
Sbjct: 26 KGLVRQQLDSFDEFLMTSIQRIVEEFPKLEIQGETQYGSGCDTPNKCEYSFGQIYLSKATHWESDGTGSPMMPNDARLRNLTYCAPVFVDVTQK-NMRSDDEITDTTDRTCIGKIPIMLRSTYCLLSEMSDVDLAQLNECPLDPGGYFIINGSEKVI--IAQERMANNTVFVFPAKDKYSYKCNVKSMVEYSFRSASNLGVNLLAKSGSGKRVVGPKIVCTMPFLKQEIPIIILFRAMGFVSDRDIIEHTIYDPDDTDMHEMLKPSIDEAFVIQDEHHALN-----YIGSRGVK-PGIPVAQRIKFAKDVITKETLPHIGTTEFRSTRKAYFLGYMVHRLLSTALKRRNPDDRDHMGHKRLDLAGPLLAFLFKGFFKNLAKELKNNTLKIIDKT-----RELKAGLALKSNVITDGLKYSLATGNWGD-QKKASETRKGVSQVLNRLTFASTLSHLRRLNSPSGR-DGKIPKPRQLHNTQWGMVCPAETPEGHAVGLVKNLALMAYISVGSKSDPIIEFLEEWSMESLEEIAP-SAIANATK---IFINGSWVG------------------IHRDPDQLMATLKKLRRSMDVVVSEVSI-VRDYSGKEIKIYTDSGRICRPLIIVNDGKFAIKKEHIKRLKEKAHARYGWQELVSDGVVEYIDTLEEETSMIAMVPADITKNSQYCKTHTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLAHVLYYSQKPLTTTRAMEYLRFRELPAGINAIVAIASYTGYNQEDSVILNESAIERGIFRSEFYR--TVNESESRNNSTEFVENIEKPNKEETLGMREEEYVKLDADGIVSPGVRVSGGDVLLGKTVTLPATDDFIETVGNSKFKKRDCSLFMRKTEQGIVDKVMLTTNNEGSKFCKIRIRTTKIPQIGDKFASRHGQKGTCGIRYRQEDMPFTSEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANRGEIGDATPFNDAVNVRKISRVLSDYGYEANGNEIMYNGYTGRKMTTTVFFGPTYYQRLKHMVDDKIHSRARGPVTMMTRQPLEGRSKEGGLRFGEMERDCQIAHGAAQFLKERLLDV-SDSYFIYVCRICGQMVTANIK---------NQT--------FKCLSCNKSTEVS-------KIRLPYAAKLLSQELQSMHITMRLFV 1158
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000054853.1 (SMESG000054853.1) HSP 1 Score: 258.455 bits (659), Expect = 9.744e-75 Identity = 148/431 (34.34%), Postives = 233/431 (54.06%), Query Frame = 3
Query: 1914 THQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV--------IGCGNKVFDDLDWDGL-----------PPIGARLIPGKSNMYAQYSSQTEQVK---VTKYKESQVGYVINISRNGSDYGATICIKLERNT---DIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNC 3131
TH E+ + A P+ ++N SPRN YQ M KQ++G+ + R D + Q PLT S+ ++ P G N IVAI++YT Y+ ED++++N +++ERG+ R Y+ V + G E++ +G + + LD DG+ P IG + S+ + + S ++ +K ++++ G+V R + G+T+ R T IGDKF+SRHGQKG +K + D+P + +GI PD + NPH+IPSRMT+G +IE + GK+ A+ + D+T F V + L Y+ G E Y+G+ GR +++ + G YYQRL+H+V+DK R G + +TRQP++GR GG+R GEMERD ++HGA+ L++R+ DC SD IV C +C
Sbjct: 17 THCEIHPSMILGVCASIIPFPDHNQSPRNCYQSAMGKQALGFYTSNFHARMDTLAHVLYYSQKPLTASRAMTYLKYRELPAGVNAIVAISTYTGYNQEDSIILNESAIERGLFRSDFYR-TVSETVNHSGHQVEAIEKPNSQETLGMREREYTKLDDDGIIRVGSCVYGGDPLIGKTVTIPPSDEFTETSKSSDLMKRDCSVFMRKTEKGFVDKALRTTDNNGSTLVKVTMRTTKIPQIGDKFASRHGQKGTCGIKYRHEDMPFTAEGITPDIIINPHAIPSRMTIGHLIETLLGKVGAIRGELGDATPFNDEINVGKICRLLSECDYESTGNEVLYNGFTGRKINTTVFFGPTYYQRLKHMVDDKIHSRARGPVTMMTRQPLEGRAKDGGLRFGEMERDCQIAHGASLFLKERLFDC-SDPYIVYICRHC 445 The following BLAST results are available for this feature:
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 4
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 4
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 4
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 4
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 3
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 4
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30001223 ID=SMED30001223|Name=DNA-directed RNA polymerase subunit beta|organism=Schmidtea mediterranea sexual|type=transcript|length=3396bpback to top protein sequence of SMED30001223-orf-1 >SMED30001223-orf-1 ID=SMED30001223-orf-1|Name=SMED30001223-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1130bp MEKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERIKIVIEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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