DNA-directed RNA polymerase subunit beta

Overview
NameDNA-directed RNA polymerase subunit beta
Smed IDSMED30001223
Length (bp)3396
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of DNA-directed RNA polymerase subunit beta (SMED30001223) t-SNE clustered cells

Violin plots show distribution of expression levels for DNA-directed RNA polymerase subunit beta (SMED30001223) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of DNA-directed RNA polymerase subunit beta (SMED30001223) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for DNA-directed RNA polymerase subunit beta (SMED30001223) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30001223

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30001223SMESG000009943.1 SmedASXL_007735SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30001223SMESG000009943.1 SmedASXL_007735SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30001223SMESG000009943.1 Contig40431newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30001223SMESG000009943.1 Contig40431uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Match: POLR1B (RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454])

HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 424/1134 (37.39%), Postives = 634/1134 (55.91%), Query Frame = 3
Query:    6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV---IGCGN-KVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
            +K  +Q+ TR +++SFN  +  G+   ++ + P EF     ERI   I + +I  P   K +I    N+YP ECR    TY GK+   +   +N  +   I + +G +PIM++S LC+L  L  + LI+HHEE +E+GGYFI+ G + ++R L+  RRNFP+   +P  K  G   T +   + CVR++ +   + L + +N    L     K+ F +PL   +KAL + S  ++FQ+  K KED S +        +    E   +T    L YLG  FR  L +P W  N +A     ++ I I++K   EK+ ++ +M  KL +    +C +++ D+L  QE+LTPG LF    +  L  +L ++         K S     + +   F     +  P  YL +TG+L   T  G+ Q++GL ++ D +NF R++++FR  HRGA F  M+++T+RRLLPESWGF+CPVHTPDG PCGL+NH +    V      +    +L   L  + ++    +S+   S+   V+L+G ++G++    A   A+ +R+ KV    E  +P   E++   ++   + +PG+++FT   RL+RPV N+  G+   E IGT EQ +++++       +G       THQEL   S+ S  A F P+ ++N SPRN+YQCQM KQ+MG+   + + RSDNKLY    PQ PL R   YD ++M   P+G N IVA+ SYT YDMEDAM++N  S ERG    ++YK   IDL+    + D S+   I  G+ +V   LD DGLP IGA+L  G    Y+  +  T +  V  YK  +   V NI    +D G+     +CI  ++ RN  IGDKF+SRHGQKG+ S      D+P +E G+VPD LFNPH  PSRMT+GM+IE +AGK AAL     D+T F   + +  +E +   L++  Y+ +G ER Y G  G  ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ +   C  C S +     P+LE+ P    + +A     + C LC         ++ +  V VP V R+F+ EL  MN+KV+L V
Sbjct:   69 QKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAF-KDERISFTILDAVISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRI-VMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHRSY---SECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLR--EKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKE--ELIGTMEQIFMNVAIFEDEVFAG-----VTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDP-YYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAHVCVKCGSLL----SPLLEKPP---PSWSAMRNRKYNCTLCSR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1172          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Match: POLR1B (RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454])

HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 424/1135 (37.36%), Postives = 634/1135 (55.86%), Query Frame = 3
Query:    6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV---IGCGN-KVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            +K  +Q+ TR +++SFN  +  G+   ++ + P EF     ERI   I + +I  P   K +I    N+YP ECR    TY GK+   +   +N  +   I + +G +PIM++S LC+L  L  + LI+HHEE +E+GGYFI+ G + ++R L+  RRNFP+   +P  K  G   T +   + CVR++ +   + L + +N    L     K+ F +PL   +KAL + S  ++FQ+  K KED S +        +    E   +T    L YLG  FR  L +P W  N +A     ++ I I++K   EK+ ++ +M  KL +    +C +++ D+L  QE+LTPG LF    +  L  +L ++         K S     + +   F     +  P  YL +TG+L   T  G+ Q++GL ++ D +NF R++++FR  HRGA F  M+++T+RRLLPESWGF+CPVHTPDG PCGL+NH +    V      +    +L   L  + ++    +S+   S+   V+L+G ++G++    A   A+ +R+ KV    E  +P   E++   ++   + +PG+++FT   RL+RPV N+  G+   E IGT EQ +++++       +G       THQEL   S+ S  A F P+ ++N SPRN+YQCQM KQ+MG+   + + RSDNKLY    PQ PL R   YD ++M   P+G N IVA+ SYT YDMEDAM++N  S ERG    ++YK   IDL+    + D S+   I  G+ +V   LD DGLP IGA+L  G    Y+  +  T +  V  YK  +   V NI    +D G+     +CI  ++ RN  IGDKF+SRHGQKG+ S      D+P +E G+VPD LFNPH  PSRMT+GM+IE +AGK AAL     D+T F   + +  +E +   L++  Y+ +G ER Y G  G  ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ +   C  C S +     P+LE+ P    + +A     + C LC         ++ +  V VP V R+F+ EL  MN+KV+L V 
Sbjct:   31 QKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAF-KDERISFTILDAVISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRI-VMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHRSY---SECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLR--EKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKE--ELIGTMEQIFMNVAIFEDEVFAG-----VTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDP-YYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAHVCVKCGSLL----SPLLEKPP---PSWSAMRNRKYNCTLCSR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 1135          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Match: POLR1B (RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454])

HSP 1 Score: 689.878 bits (1779), Expect = 0.000e+0
Identity = 395/1044 (37.84%), Postives = 588/1044 (56.32%), Query Frame = 3
Query:  270 TINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV---IGCGN-KVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
             +N  +   I + +G +PIM++S LC+L  L  + LI+HHEE +E+GGYFI+ G + ++R L+  RRNFP+   +P  K  G   T +   + CVR++ +   + L + +N    L     K+ F +PL   +KAL + S  ++FQ+  K KED S +        +    E   +T    L YLG  FR  L +P W  N +A     ++ I I++K   EK+ ++ +M  KL +    +C +++ D+L  QE+LTPG LF    +  L  +L ++         K S     + +   F     +  P  YL +TG+L   T  G+ Q++GL ++ D +NF R++++FR  HRGA F  M+++T+RRLLPESWGF+CPVHTPDG PCGL+NH +    V      +    +L   L  + ++    +S+   S+   V+L+G ++G++    A   A+ +R+ KV    E  +P   E++   ++   + +PG+++FT   RL+RPV N+  G+   E IGT EQ +++++       +G       THQEL   S+ S  A F P+ ++N SPRN+YQCQM KQ+MG+   + + RSDNKLY    PQ PL R   YD ++M   P+G N IVA+ SYT YDMEDAM++N  S ERG    ++YK   IDL+    + D S+   I  G+ +V   LD DGLP IGA+L  G    Y+  +  T +  V  YK  +   V NI    +D G+     +CI  ++ RN  IGDKF+SRHGQKG+ S      D+P +E G+VPD LFNPH  PSRMT+GM+IE +AGK AAL     D+T F   + +  +E +   L++  Y+ +G ER Y G  G  ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ +   C  C S +     P+LE+ P    + +A     + C LC         ++ +  V VP V R+F+ EL  MN+KV+L V 
Sbjct:   65 AVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRI-VMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHRSY---SECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLR--EKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKE--ELIGTMEQIFMNVAIFEDEVFAG-----VTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDP-YYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAHVCVKCGSLL----SPLLEKPP---PSWSAMRNRKYNCTLCSR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 1079          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Match: POLR1B (RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454])

HSP 1 Score: 616.305 bits (1588), Expect = 0.000e+0
Identity = 360/955 (37.70%), Postives = 533/955 (55.81%), Query Frame = 3
Query:  540 IRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV---IGCGN-KVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVP--WHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            + CVR++ +   + L + +N    L     K+ F +PL   +KAL + S  ++FQ+  K KED S +        +    E   +T    L YLG  FR  L +P W  N +A     ++ I I++K   EK+ ++ +M  KL +    +C +++ D+L  QE+LTPG LF    +  L  +L ++         K S     + +   F     +  P  YL +TG+L   T  G+ Q++GL ++ D +NF R++++FR  HRGA F  M+++T+RRLLPESWGF+CPVHTPDG PCGL+NH +    V      +    +L   L  + ++    +S+   S+   V+L+G ++G++    A   A+ +R+ KV  +    +P   E++   ++   + +PG+++FT   RL+RPV N+  G+   E IGT EQ +++++       +G       THQEL   S+ S  A F P+ ++N SPRN+YQCQM KQ+MG+   + + RSDNKLY    PQ PL R   YD ++M   P+G N IVA+ SYT YDMEDAM++N  S ERG    ++YK   IDL+    + D S+   I  G+ +V   LD DGLP IGA+L  G    Y+  +  T +  V  YK  +   V NI    +D G+     +CI  ++ RN  IGDKF+SRHGQKG+ S      D+P +E G+VPD LFNPH  PSRMT+GM+IE +AGK AAL     D+T F   + +  +E +   L++  Y+ +G ER Y G  G  ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ +   C  C S +     P+LE+ P  W     +A     + C LC         ++ +  V VP V R+F+ EL  MN+KV+L V 
Sbjct:    1 MHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRI-VMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHRSY---SECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKR--IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKE--ELIGTMEQIFMNVAIFEDEVFAG-----VTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDP-YYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAHVCVKCGSLL----SPLLEKPPPSW-----SAMRNRKYNCTLCSR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 924          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Match: POLR1B (RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454])

HSP 1 Score: 424.476 bits (1090), Expect = 4.885e-131
Identity = 239/570 (41.93%), Postives = 335/570 (58.77%), Query Frame = 3
Query: 1689 VPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV---IGCGN-KVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            +P   E++   ++   + +PG+++FT   RL+RPV N+  G+   E IGT EQ +++++       +G       THQEL   S+ S  A F P+ ++N SPRN+YQCQM KQ+MG+   + + RSDNKLY    PQ PL R   YD ++M   P+G N IVA+ SYT YDMEDAM++N  S ERG    ++YK   IDL+    + D S+   I  G+ +V   LD DGLP IGA+L  G    Y+  +  T +  V  YK  +   V NI    +D G+     +CI  ++ RN  IGDKF+SRHGQKG+ S      D+P +E G+VPD LFNPH  PSRMT+GM+IE +AGK AAL     D+T F   + +  +E +   L++  Y+ +G ER Y G  G  ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ +   C  C S +     P+LE+ P    + +A     + C LC         ++ +  V VP V R+F+ EL  MN+KV+L V 
Sbjct:  406 IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKE--ELIGTMEQIFMNVAIFEDEVFAG-----VTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDP-YYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAHVCVKCGSLL----SPLLEKPP---PSWSAMRNRKYNCTLCSR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 952          

HSP 2 Score: 198.364 bits (503), Expect = 2.674e-51
Identity = 118/361 (32.69%), Postives = 191/361 (52.91%), Query Frame = 3
Query:    6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTL 1076
            +K  +Q+ TR +++SFN  +  G+   ++ + P EF     ERI   I + +I  P   K +I    N+YP ECR    TY GK+   +   +N  +   I + +G +PIM++S LC+L  L  + LI+HHEE +E+GGYFI+ G + ++R L+  RRNFP+   +P  K  G   T +   + CVR++ +   + L + +N    L     K+ F +PL   +KAL + S  ++FQ+  K KED S +        +    E   +T    L YLG  FR  L +P W  N +A     ++ I I++K   EK+ ++ +M  KL +    +C +++ D+L  QE+LTPG LF    + +L
Sbjct:   31 QKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAF-KDERISFTILDAVISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRI-VMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKGSL 389          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Celegans
Match: rpoa-2 (DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q27493])

HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0
Identity = 399/1151 (34.67%), Postives = 617/1151 (53.61%), Query Frame = 3
Query:   24 DFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSI-----DNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQF-KPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAK--EDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFL--KMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKD--SKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQ-FICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPEL-------LVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVT-HQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGN--KVFDDLDWDGLPPIGARLIPGKSNM-----YAQYSSQTEQVKVTKYKESQVGY--VINISRNG-SDYGAT---ICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYY--RPVLEQVPWHNQTDNA-KHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
            D    ++DSF+  +  G +   + +   +F L  G+ + +   +  + KP          +T  + P ECR+  LTY G + + + + +N S  + I   +G +PIM+RS  CHL G+S +EL+   EE  E GGYFIV G++ ++R L+  RRNFP+    K  ++ G   +     +R V+++ T   + L + D     L LQ  ++ F +PL  I+KAL +K+   +   F + +  + F    +L M+      +E +     + +  +GS+FR  +  ++  W  +LEAGR  I E + I++    EK+  +  M  KL + V  +C  E+ D   FQE    G +   + R  + N +  V R ++   S+         +  +  +     I   M Y L+TG+L       ++Q +G  ++ + IN  RF+++FRA HRGAFF++M+++ +R+L PE+WGF+CPVHTPDG PCGLLNH + +  +    + +    SL   L +  M  ++  + A   +    V++NG+ LGY+    A     ++R  KV  D  +       LV R+T+I  KNI     Q+PGIYI +++GRL+RPV N+      +E+IGTFEQ YL +       +   +++  VT HQEL    ++SF     P+ ++N SPRN+YQCQM KQ+MG   ++   R+DNK+Y    PQ P+ + + Y+++ M + PLG N  VA+ SYT YDMEDAM IN  S +RG     + K   I+L  +R R     I   N  +    +  DGLP      IPG+        Y  ++ +T   +  K+  ++  Y  ++ I   G  D GA    I  ++ERN  IGDKF+SRHGQKG+NS       LP SE G+VPD +FNPH  PSRMT+GMMIE +AGK AA   ++ D++ F   + +  +  +   L    Y+ +G E FY G  GR M+ +I  G+VYYQRLRH++ DK+QVR  G ID IT QPVKGRK GGGIR GEMERD +++HG +F LQDR+++C SD+ +   C  C S +      R     +    + D    +  + RC+ C+ D       + +  ++VP V R+   EL  MNVK++L +
Sbjct:    4 DIASYHVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQ---CQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSL---LAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDI--KNIQ---TQYPGIYILSDAGRLIRPVRNLAMD--AVEHIGTFEQVYLSV------VLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERER---KTIFYRNPREEIKTVGPDGLP------IPGRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLLNC-SDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQRCRTCDKD-------DQVFLLQVPRVFRYLTAELAAMNVKIKLGI 1118          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Celegans
Match: rpc-2 (DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q27492])

HSP 1 Score: 343.199 bits (879), Expect = 5.857e-100
Identity = 301/1137 (26.47%), Postives = 507/1137 (44.59%), Query Frame = 3
Query:  201 IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV------GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFS-IVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMP---IWLTNLEAGRRFID-------EYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNF---QEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRI-MTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIK-SFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVP-----RTTEIICKNISIT-AAQFPGIYIFTNSGRLLRPVYNIMFGEPVI----------------EYIGTFEQTYLDISCQGGNTMS--GGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCG------NKVF--DDLDWDGLPPIGARLIP-------------GKSNMYAQYSSQTEQV--KVTKYKESQVGY----------VINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            I P ECR  ++TY   + + +  T  N         +G +PIM+RS+ C L  L+ EEL +  E   + GGYF+VKG++ ++    Q  +N  +V     +++       T     + Y+       T  + K   R N   D           +P+ +I KA+  +S  ++       ++  S   + L    N     ++Q    V+  +    KF  F  +P   + +         +D        +IA    +++ K   + +M  +L   +  +  +   D  +F   + +   GSL   +F      + + + R     + K    P+ +IVK   +D   I N +   +STG+        +K+    R+ +T  ++   +I+      R    F    K S  R L P  WG +CP  TP+G  CGL+ + +   ++      SD+   L   L   V +L+ +  S  +K +   + LNG L+G   D                  PE +V      R + ++ + +S++ +     ++I ++ GRL RP   +  G P++                +++      YLD++      ++  G +     TH E+   ++    AG  PY ++N SPRN YQC M KQ+MG   Y+ + R D+ +Y    PQ PL +SKT +  N +K P G N I+A+ SY+ YD+EDA+V+N  SL+RG GRC +YKH          +  + ++G          +F   +LD +G+   GAR++P             G+S   A  S+ T  +  +   YK+  + Y          V+        +   + ++  R  ++GDKFSSRHGQKGV  L  Q  D+P ++ G+VPD + NPH  PSRMTVG ++E ++GK   ++      TAF   Q  D+ EE    L +  Y+  G +    G  G+ + + I  G +YYQ+L+H+V DK   R  G    +TRQP +GR   GG+RLGEMERD L+++GA+  L +R++  +SD+  V  C+ C                          G+   C+ C        S+++M  +++P   +    EL +MN+  +L +A
Sbjct:  100 ITPQECRLRDMTYSAPISVDIEYTRGNQRVFKKDLIIGRMPIMLRSSKCILRDLAEEELARVQECPYDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNSSKELQCEVLSSTSERKSKTYV-------TMKKGKYSVRHNQLTD----------DVPVSIIFKAMGVESDFDIVSTIGHEEKYVSAFAQTLEESINAGVYTQQQALAYVTS-KVKARKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRL---IQTELGENGLDDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKRIADNALMKTMAAPL-DIVKHMRQD--MITNTIVNAMSTGNWI------IKRFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLA---LISHITTDSDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIGTAVD------------------PERVVKAVRDLRRSGLLSEFVSVSRSLTNRSVFISSDGGRLCRPYIIVKNGTPMLTQAHVQELKEGKMIFEDFVDDGIVEYLDVNEMNDALIAVYGREIGPETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTFDRLLGPALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESGPGASASANTIGIAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVVNGTYHYGTAFGGDQVKDVCEE----LAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLM-VSSDEFKVDVCTGCGVI-----------------------GSKGWCQKCR-------SSKSMANIKIPYACKLLFQELQSMNIVPRLDLA 1150          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Celegans
Match: rpc-2 (DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:Q27492])

HSP 1 Score: 343.199 bits (879), Expect = 5.857e-100
Identity = 301/1137 (26.47%), Postives = 507/1137 (44.59%), Query Frame = 3
Query:  201 IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV------GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFS-IVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMP---IWLTNLEAGRRFID-------EYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNF---QEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRI-MTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIK-SFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVP-----RTTEIICKNISIT-AAQFPGIYIFTNSGRLLRPVYNIMFGEPVI----------------EYIGTFEQTYLDISCQGGNTMS--GGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCG------NKVF--DDLDWDGLPPIGARLIP-------------GKSNMYAQYSSQTEQV--KVTKYKESQVGY----------VINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            I P ECR  ++TY   + + +  T  N         +G +PIM+RS+ C L  L+ EEL +  E   + GGYF+VKG++ ++    Q  +N  +V     +++       T     + Y+       T  + K   R N   D           +P+ +I KA+  +S  ++       ++  S   + L    N     ++Q    V+  +    KF  F  +P   + +         +D        +IA    +++ K   + +M  +L   +  +  +   D  +F   + +   GSL   +F      + + + R     + K    P+ +IVK   +D   I N +   +STG+        +K+    R+ +T  ++   +I+      R    F    K S  R L P  WG +CP  TP+G  CGL+ + +   ++      SD+   L   L   V +L+ +  S  +K +   + LNG L+G   D                  PE +V      R + ++ + +S++ +     ++I ++ GRL RP   +  G P++                +++      YLD++      ++  G +     TH E+   ++    AG  PY ++N SPRN YQC M KQ+MG   Y+ + R D+ +Y    PQ PL +SKT +  N +K P G N I+A+ SY+ YD+EDA+V+N  SL+RG GRC +YKH          +  + ++G          +F   +LD +G+   GAR++P             G+S   A  S+ T  +  +   YK+  + Y          V+        +   + ++  R  ++GDKFSSRHGQKGV  L  Q  D+P ++ G+VPD + NPH  PSRMTVG ++E ++GK   ++      TAF   Q  D+ EE    L +  Y+  G +    G  G+ + + I  G +YYQ+L+H+V DK   R  G    +TRQP +GR   GG+RLGEMERD L+++GA+  L +R++  +SD+  V  C+ C                          G+   C+ C        S+++M  +++P   +    EL +MN+  +L +A
Sbjct:  100 ITPQECRLRDMTYSAPISVDIEYTRGNQRVFKKDLIIGRMPIMLRSSKCILRDLAEEELARVQECPYDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNSSKELQCEVLSSTSERKSKTYV-------TMKKGKYSVRHNQLTD----------DVPVSIIFKAMGVESDFDIVSTIGHEEKYVSAFAQTLEESINAGVYTQQQALAYVTS-KVKARKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRL---IQTELGENGLDDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKRIADNALMKTMAAPL-DIVKHMRQD--MITNTIVNAMSTGNWI------IKRFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLA---LISHITTDSDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIGTAVD------------------PERVVKAVRDLRRSGLLSEFVSVSRSLTNRSVFISSDGGRLCRPYIIVKNGTPMLTQAHVQELKEGKMIFEDFVDDGIVEYLDVNEMNDALIAVYGREIGPETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTFDRLLGPALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESGPGASASANTIGIAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVVNGTYHYGTAFGGDQVKDVCEE----LAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLM-VSSDEFKVDVCTGCGVI-----------------------GSKGWCQKCR-------SSKSMANIKIPYACKLLFQELQSMNIVPRLDLA 1150          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Celegans
Match: rpb-2 (DNA-directed RNA polymerase II subunit RPB2 [Source:UniProtKB/Swiss-Prot;Acc:Q10578])

HSP 1 Score: 303.908 bits (777), Expect = 5.223e-86
Identity = 237/845 (28.05%), Postives = 394/845 (46.63%), Query Frame = 3
Query: 1008 DTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFI--DMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV-----------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPL--TRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVI---------GCGNKVFDDLDWDGLPPIGARL-----IPGKS--------NMYAQYSSQTEQVKVTKYKESQVGYV----INISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAP 3362
            D +  + +   G L   +FR    N L  +    + +++KN +  +   VK+S      I   + Y L+TG+ G       K +     ++  +N   + A      R    I  + K +  R+L    WG VCP  TP+G   GL+ + ++   +   +      + LE +  +++ E++   + AD ++   + +NG  +G    R   +    ++  +          R  +II   +S +   +   I I+T++GR+ RP+                             ++ + G  V+E I + E+    I+    +  SGG  D   TH E+    +    A   P+ ++N SPRN YQ  M KQ+MG    +   R D   +    PQ PL  TRS  Y  FN  + P G N IVAI SY+ Y+ ED++++N ++++RG+ R   Y+ Y  D   +    +E +I         G  + ++D LD DG+   G R+     I GK+        ++ A      ++   T  + S+ G V    ++++ +G+ +   I ++  R   IGDKF+SRHGQKG   +  +  D+P + +G+ PD + NPH++PSRMT+G +IE + GKL+A   +  D+T F  +  V++    L  Y Y   G E  Y+G+ G+ + ++I  G  YYQRL+H+V+DK   R  G I  + RQP++GR   GG+R GEMERD  +SHGAT  L++R+ +  SD   V  C+NC   + +  R                  NS+ CK C N  + S        VR+P   +    EL +M++  +L V P
Sbjct:  393 DHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDFALDVCVKTS-----TITRGLTYSLATGNWGDQK----KAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSP-SAIADATK---IFVNGAWVGI--HREPDQLMTTLKKLR----------RQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEETSMIAMMPEDLRSGGYCDTH-THCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFN--ELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYR-DNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKF-VKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEV-SDPYHVYVCNNCGLIVVANLRT-----------------NSFECKACRNKTQVSA-------VRIPYACKLLFQELMSMSIAPRLMVKP 1182          

HSP 2 Score: 52.7582 bits (125), Expect = 1.693e-6
Identity = 42/155 (27.10%), Postives = 74/155 (47.74%), Query Frame = 3
Query:   27 FTRDYIDSFNAFLKPGIRNILKHLKPTEFE-----LGTGERXXXXXXXXXXQ----KPKCSIDNTRNI--YPWECRRMNLTYEGK--VIMTMTLTINNSTPETITETV--GTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVML 446
              R  +DSF+ F++  ++ I++   P E +     LGT             Q    KP     +   +   P E R  NLTY     V +T  +T ++S  E + + V  G +P+M+RS+ C L  ++  +L + +E   + GGYF++ G++ +L
Sbjct:   47 LVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVL 201          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
Match: RpI135 (gene:FBgn0003278 transcript:FBtr0078054)

HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 383/1134 (33.77%), Postives = 608/1134 (53.62%), Query Frame = 3
Query:   12 RQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSID----NTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPV-VQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKE-DFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFR-EFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEI----ICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGS-----DYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
            R + +    ++DSF+  L  G+ N  KH+ P  +    GE+I + +E+I I KPK   D     TR IYP + R+++++Y G   + +  ++N      I   +G +PIM+RS  C+L   + EE++KH E D E GG F+++GN+ ++R L+ TRRN P+ V+    +  G + +     ++ VR+DE++    + + +N          K+   +P+ +I+K L + +  E++    +  E D   V  +  M  +   +     T+  C  ++G+ FR  F ++P W  + +     + E + I++  Y +K++LI+ M+ KL      K   E+ D+   QE+L PG L+Q+     + ++++ V R ++  ++         ++    + +  +   +   L+TG++   T  G+ QN+GL IM +NIN  R++++FRA HRG++F  M+++  R+LLP++WGF+CPVHTPDGTPCGLLNH ++   +             +  +   +M L+  +   +K     V L+GK LG+I+   A++  + +RY K+F      +P+  EI      KN      QFPG+YI T   R++RPV+N+ +    +EYIGT EQ Y++I+                TH EL+     S  A   P  +YN SPRN+YQCQM KQ+MG    +   ++ NKLY    P  PL R   YD   +    +G N IVA+ SYT YDMEDAM+IN  + ERG    +IYK     LT D+     +      ++   LD DGLP  G++L  G S +Y  +  +    KV K  E +   V +I + GS          I +++ R   IGDKF+SR GQKG+ S K    DLP +E G++PD +FNPH  PSRMT+ MMIE +AGK AA+     D+T F+ S+    ++ +   L +  Y+ +G ER Y G  GR M ++I  GVV+YQRLRH+V DK+QVR+ G ++  T QP+KGRK GGG+R GEMERD L+SHGA F LQDR+   NSDK     C  C S +       L+++   N+T          C+LC +       N ++  + +P   ++ + EL+++N+  +  +
Sbjct:   30 RHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLRE--VQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLSNRRYLGEK--LYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGT----LPQMMEIGFIPFKKN-----GQFPGLYIATGPARMMRPVWNLKWKR--VEYIGTLEQLYMEIAIDAKEMYPD-----FTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKF--LTLDKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYG-SPLYCYFDGEVATYKVVKMDEKEDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFH-NSDKTHTLVCHKCGSILAP-----LQRIVKRNETGGLSSQPD-TCRLCGD-------NSSVSMIEIPFSFKYLVTELSSVNINARFKL 1126          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
Match: RpIII128 (gene:FBgn0004463 transcript:FBtr0087977)

HSP 1 Score: 360.147 bits (923), Expect = 4.987e-106
Identity = 320/1170 (27.35%), Postives = 522/1170 (44.62%), Query Frame = 3
Query:   15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIY----PWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTR-----ERQFTTNVSCLEYLGSKF--REFLKMPIWLTNLEAGRRFIDEYIA-INVKDYREKYELILV--MVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSK--RILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFA-DKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEY---------IGTFEQ-------TYLDISCQGGNTMSGGDSDVS--VTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIG-----CGNKVF---DDLDWDGLPPIGARL----------IPGKSNMYAQYSSQTEQVKVT----KYKESQVGYV--INISRNG-SDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNV 3338
            Q++   + +IDSFN F+   I+ I+K     E  + +G      ++ + ++  K  ID+  NI     P ECR  + TY   + + +  T      +     +G +P+M+R + C L G S  EL K +E   + GGYF+V+G + ++  L+Q + ++  +  +    V   +     + +  R    +   K + + N+  D           IP+ VI KAL   S           +E  S++ + +   N+F          +  T    LEY+GSK   + F        + EA    +   +A + V ++  + + I V  MV ++ +   DK   +  D    + +   GSL   +F     +    ++  +K    KN    I ++  + F   K  R       L S  S G  T+   K       +T  ++   +I+      R    F    K S  R L P  WG +CP  TP+G  CGL+ + ++ T +                    V ++ ++     +      V +NG +LG   +   +    ++RY +          R    +  + S T      IYI T+ GRL RP   +    P+++          I  F+         YLD++ +  + ++  +  +    TH E+   ++    AG  PY ++N SPRN YQC M KQ+MG   Y+ + R D+ +Y  + P  P+ +SKT +  N  K P G N  VA+ SY+ YD+EDA+++N  S++RG GRC +YK+    +     +  + ++G       NKV    D LD DG+   G ++          +P  ++M      Q+ QV  T     YK  +  Y+  + +S N   D+   I ++  R  +IGDKFSSRHGQKGV  L ++  D+P ++ GI PD + NPH  PSRMTVG  +E + GK   L  K    TAF  S  VE+  A L  + ++  G + FY G  G  +++ I  G VYYQ+L+H+V+DK   R  G    +TRQP +GR   GG+RLGEMERD L+S+GA+  + +R++  +SD   V  C  C    +                       SW C  C+       S+ N+ ++ +P   +    ELT+MNV
Sbjct:   43 QVKGLVKQHIDSFNHFINVDIKKIVK---ANEL-VTSGADPLFYLKYLDVRVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVI--LIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTD----------DIPIVVIFKALGVVS----------DQEIQSLIGIDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFE----DLFKRMNWELKTIADKN----IPKVKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFKMERAG--VTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVA---FNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNH--KHLVRNLRYMR-------RKGRMGSYVSVHTSYTQR---CIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNP-LQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSK-VEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLM-ISSDAFEVDVCRTCGRMAYC----------------------SW-CHFCQ-------SSANVSKISMPYACKLLFQELTSMNV 1128          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
Match: RpII140 (gene:FBgn0262955 transcript:FBtr0082892)

HSP 1 Score: 315.849 bits (808), Expect = 4.174e-90
Identity = 303/1227 (24.69%), Postives = 531/1227 (43.28%), Query Frame = 3
Query:   27 FTRDYIDSFNAFLKPGIRNILKHLKPTEF---------ELGTGERXXXXXXXXXXQKP-KCSIDNTRN-IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET-----VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETT--SEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQN--KSYL--EMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAIN-----------VKDYREKY-ELILVMVLKLHSFVNDKCCQESTDTLNF-----------------------QEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVP------RTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSD--VSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDE--------SVIGCGNKVFDDLDWDGLPPIGARL-----IPGKSNMYAQYSSQ--------TEQVKVTKYKESQVGYVINISRNGSDYGATIC---IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
              R  +DSF+ F++  ++ I++     E          E+ T  R  +  E I + KP     D + + + P E R  NLTY   + + +T T N    + +        +G IPIM+RS  C L  L+  +L + +E   + GGYFI+ G++ +L           + Q    +K+ T+      Y+  ++D +    +EI+     ++ P   L +          ++ +  QN  KS +   +    P  K++  I+ V          R   F  +   LE++   F +   M +   +L+      ++ +A+N            KD R KY + IL   +  H  V+D C  +    L +                       + +   G L   +FR    N +  V    + F+ +  +  ++  +K++      I + + Y L+TG+ G       +   G+  + + + F   +++ R  +      D K +  R+L    WG +CP  TP+G   GL+ + ++   +   +  S   + LE +  +++ E+    + AD ++   + +NG  +G                  +  DPE L+       R  +II   +S I   +   I I+T++GR+ RP+                           + ++    V+EYI T E+  + I+    +     D     + TH E+    +    A   P+ ++N SPRN YQ  M KQ+MG    +   R D   +    P  PL  +++ +    ++ P G N IVAI  YT Y+ ED++++N +++ERG  R   Y+ Y        G  +E        +  G  N  +D LD DG+   G R+     + GK+    +   +        +++   T  + S+ G V  +    +  G   C   ++  R   IGDKF+SRHGQKG   ++ +  D+  + +G+ PD + NPH+IPSRMT+G +IE + GKL +   +  D+T F  +  V++    L+ Y Y   G E  Y+G+ GR +++++ +G  YYQRL+H+V+DK   R  G +  + RQP++GR   GG+R GEMERD  +SHGA   L++R+ +  SD   V  C+ C     +  R                  N++ CK C+N  + S       +VR+P   +    EL +MN+  +L V
Sbjct:   40 LVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVL-----------IAQ----EKMATN----TVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVN---------MMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVF---------RALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNI-----ITDGLRYSLATGNWGD-QKKAHQARAGVSQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP-SAIADATK---IFVNGCWVG------------------IHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEV-SDPYRVHICNFCGLIAIANLR-----------------NNTFECKGCKNKTQIS-------QVRLPYAAKLLFQELMSMNIAPRLMV 1175          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
Match: RpII140 (gene:FBgn0262955 transcript:FBtr0344600)

HSP 1 Score: 315.849 bits (808), Expect = 4.174e-90
Identity = 303/1227 (24.69%), Postives = 531/1227 (43.28%), Query Frame = 3
Query:   27 FTRDYIDSFNAFLKPGIRNILKHLKPTEF---------ELGTGERXXXXXXXXXXQKP-KCSIDNTRN-IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET-----VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETT--SEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQN--KSYL--EMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAIN-----------VKDYREKY-ELILVMVLKLHSFVNDKCCQESTDTLNF-----------------------QEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVP------RTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSD--VSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDE--------SVIGCGNKVFDDLDWDGLPPIGARL-----IPGKSNMYAQYSSQ--------TEQVKVTKYKESQVGYVINISRNGSDYGATIC---IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
              R  +DSF+ F++  ++ I++     E          E+ T  R  +  E I + KP     D + + + P E R  NLTY   + + +T T N    + +        +G IPIM+RS  C L  L+  +L + +E   + GGYFI+ G++ +L           + Q    +K+ T+      Y+  ++D +    +EI+     ++ P   L +          ++ +  QN  KS +   +    P  K++  I+ V          R   F  +   LE++   F +   M +   +L+      ++ +A+N            KD R KY + IL   +  H  V+D C  +    L +                       + +   G L   +FR    N +  V    + F+ +  +  ++  +K++      I + + Y L+TG+ G       +   G+  + + + F   +++ R  +      D K +  R+L    WG +CP  TP+G   GL+ + ++   +   +  S   + LE +  +++ E+    + AD ++   + +NG  +G                  +  DPE L+       R  +II   +S I   +   I I+T++GR+ RP+                           + ++    V+EYI T E+  + I+    +     D     + TH E+    +    A   P+ ++N SPRN YQ  M KQ+MG    +   R D   +    P  PL  +++ +    ++ P G N IVAI  YT Y+ ED++++N +++ERG  R   Y+ Y        G  +E        +  G  N  +D LD DG+   G R+     + GK+    +   +        +++   T  + S+ G V  +    +  G   C   ++  R   IGDKF+SRHGQKG   ++ +  D+  + +G+ PD + NPH+IPSRMT+G +IE + GKL +   +  D+T F  +  V++    L+ Y Y   G E  Y+G+ GR +++++ +G  YYQRL+H+V+DK   R  G +  + RQP++GR   GG+R GEMERD  +SHGA   L++R+ +  SD   V  C+ C     +  R                  N++ CK C+N  + S       +VR+P   +    EL +MN+  +L V
Sbjct:   40 LVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVL-----------IAQ----EKMATN----TVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVN---------MMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVF---------RALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNI-----ITDGLRYSLATGNWGD-QKKAHQARAGVSQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP-SAIADATK---IFVNGCWVG------------------IHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEV-SDPYRVHICNFCGLIAIANLR-----------------NNTFECKGCKNKTQIS-------QVRLPYAAKLLFQELMSMNIAPRLMV 1175          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Match: polr1b (RNA polymerase I subunit B [Source:ZFIN;Acc:ZDB-GENE-040426-1598])

HSP 1 Score: 715.687 bits (1846), Expect = 0.000e+0
Identity = 430/1141 (37.69%), Postives = 648/1141 (56.79%), Query Frame = 3
Query:   18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCS---IDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFS-----IVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKP---IKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKV--TKYKESQVGYVINISRNGSDYG--ATICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVP--WHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
            +Q+  + +I+SF+  +  G+  +++ + P EF L  G+RI +     II  P  S   I     ++P ECR    TY  K++  ++ ++N      I +++G +PIM++S LC+LHGLS +EL++HHEE +E+GGYFIV G + ++R L+  RRN+P+   +P  K  G   T +   +RCV+++ T   + L + DN    +     K+ F +PL   +KAL + S  +++Q+  K +ED S     + E+L ++ ++  T      T +  L YLG +FR  L +P W T+ +     +DE + I++K   EK+ ++ +M  KL SF   +C +E+ D+  F E+LTPG L+    +  +  +L +V    K+ + K   +      + +   F     +     YLL+TG+L   T  G+ QN+GL ++ D +NF R++++FR  HRGA F  M+++T+R+LLPESWGF+CPVHTPDG PCGL+NH + +  + A    +     L   L  +  + N  ++++D     C  V+L+G ++G++    A      +R  KV  + +  VP  TEI+    +  A+ +PG+Y+FT   R++R V N+  G+   E IG FEQ YL++             D   THQEL   S+ S  A F P+ ++N SPRN+YQCQMSKQ+MG+  +S +YRSDNKLY    PQ PL R   YD +++   P+G N IVA+ SYT YDMEDAM++N +S ERG    ++YK  +IDL+      D  V G      KV   LD DGLP IG+ L  G    Y   S  T Q  V   KY+ES V   I +  N +  G    IC+  ++ RN  IGDKF+SRHGQKG+ S      D+P +E G+ PD LFNPH  PSRMT+GM+IE +AGK A+L     D+T F  S+    +E +   L++  Y+ +G ER Y G  G  ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ + + C +C S +     P+LE+ P  W     +A       C LC         ++++  V VP V ++F+ EL  MN+K++L V
Sbjct:   34 VQELVKAHIESFDQAVTDGLCRVVEAIPPMEF-LYKGDRISLSFVEAIIHTPSVSKGGISRDLRVFPAECRGRRCTYRAKLVADVSWSVNGVPKGIIKQSLGQMPIMVKSKLCNLHGLSPKELLEHHEEAEEMGGYFIVNGIEKVIRLLIMPRRNYPIAVSRPKFKSRGQGYTQYAISMRCVKEEHTAINMNLHYLDNGTVMVNFIYRKELFFLPLGFALKALVDYSDYQIYQELIKGREDNSFYKSCVSEMLRIVMDQGCT------TKIKVLNYLGERFRVKLNLPEWFTHEQCAHFLLDECLCIHLKTDVEKFYMLCLMTRKLFSFAKQECMEENPDSPMFHEVLTPGQLYLMFLKEKMEGWLVSV----KLALEKKPQRVGGLTPDSMTKLFNMGTDLTKAFEYLLATGNLMSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTTVRKLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIVAPVYPTSTLPGLLCSLGVNAADGNPGQAYSD-----CYPVILDGAMIGWVEKEVAPSVIESLRRFKVLGEKK--VPPWTEIVLVPQTGKASLYPGLYLFTTPCRMVRTVRNLSLGKQ--ELIGIFEQVYLNV-----GIFEKEIEDGVTTHQELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEIIDLSEKVKGDDSIVFGVKPGDPKVMGKLDADGLPFIGSVLKYGDP-FYGYISLNTGQSHVYFYKYQESCVVDNIKVCSNETGTGRFKRICVTSRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGLCHDATPFTFSEENSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAQVCMDCGSLL----SPLLEKPPPNW-----SATRHRKTICLLCNK-------SDSIETVSVPYVFKYFVAELAAMNIKIKLDV 1131          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Match: polr1b (RNA polymerase I subunit B [Source:ZFIN;Acc:ZDB-GENE-040426-1598])

HSP 1 Score: 715.687 bits (1846), Expect = 0.000e+0
Identity = 430/1141 (37.69%), Postives = 648/1141 (56.79%), Query Frame = 3
Query:   18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCS---IDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFS-----IVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKP---IKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKV--TKYKESQVGYVINISRNGSDYG--ATICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVP--WHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
            +Q+  + +I+SF+  +  G+  +++ + P EF L  G+RI +     II  P  S   I     ++P ECR    TY  K++  ++ ++N      I +++G +PIM++S LC+LHGLS +EL++HHEE +E+GGYFIV G + ++R L+  RRN+P+   +P  K  G   T +   +RCV+++ T   + L + DN    +     K+ F +PL   +KAL + S  +++Q+  K +ED S     + E+L ++ ++  T      T +  L YLG +FR  L +P W T+ +     +DE + I++K   EK+ ++ +M  KL SF   +C +E+ D+  F E+LTPG L+    +  +  +L +V    K+ + K   +      + +   F     +     YLL+TG+L   T  G+ QN+GL ++ D +NF R++++FR  HRGA F  M+++T+R+LLPESWGF+CPVHTPDG PCGL+NH + +  + A    +     L   L  +  + N  ++++D     C  V+L+G ++G++    A      +R  KV  + +  VP  TEI+    +  A+ +PG+Y+FT   R++R V N+  G+   E IG FEQ YL++             D   THQEL   S+ S  A F P+ ++N SPRN+YQCQMSKQ+MG+  +S +YRSDNKLY    PQ PL R   YD +++   P+G N IVA+ SYT YDMEDAM++N +S ERG    ++YK  +IDL+      D  V G      KV   LD DGLP IG+ L  G    Y   S  T Q  V   KY+ES V   I +  N +  G    IC+  ++ RN  IGDKF+SRHGQKG+ S      D+P +E G+ PD LFNPH  PSRMT+GM+IE +AGK A+L     D+T F  S+    +E +   L++  Y+ +G ER Y G  G  ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ + + C +C S +     P+LE+ P  W     +A       C LC         ++++  V VP V ++F+ EL  MN+K++L V
Sbjct:   34 VQELVKAHIESFDQAVTDGLCRVVEAIPPMEF-LYKGDRISLSFVEAIIHTPSVSKGGISRDLRVFPAECRGRRCTYRAKLVADVSWSVNGVPKGIIKQSLGQMPIMVKSKLCNLHGLSPKELLEHHEEAEEMGGYFIVNGIEKVIRLLIMPRRNYPIAVSRPKFKSRGQGYTQYAISMRCVKEEHTAINMNLHYLDNGTVMVNFIYRKELFFLPLGFALKALVDYSDYQIYQELIKGREDNSFYKSCVSEMLRIVMDQGCT------TKIKVLNYLGERFRVKLNLPEWFTHEQCAHFLLDECLCIHLKTDVEKFYMLCLMTRKLFSFAKQECMEENPDSPMFHEVLTPGQLYLMFLKEKMEGWLVSV----KLALEKKPQRVGGLTPDSMTKLFNMGTDLTKAFEYLLATGNLMSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTTVRKLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIVAPVYPTSTLPGLLCSLGVNAADGNPGQAYSD-----CYPVILDGAMIGWVEKEVAPSVIESLRRFKVLGEKK--VPPWTEIVLVPQTGKASLYPGLYLFTTPCRMVRTVRNLSLGKQ--ELIGIFEQVYLNV-----GIFEKEIEDGVTTHQELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEIIDLSEKVKGDDSIVFGVKPGDPKVMGKLDADGLPFIGSVLKYGDP-FYGYISLNTGQSHVYFYKYQESCVVDNIKVCSNETGTGRFKRICVTSRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGLCHDATPFTFSEENSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAQVCMDCGSLL----SPLLEKPPPNW-----SATRHRKTICLLCNK-------SDSIETVSVPYVFKYFVAELAAMNIKIKLDV 1131          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Match: polr3b (polymerase (RNA) III (DNA directed) polypeptide B [Source:ZFIN;Acc:ZDB-GENE-030131-2887])

HSP 1 Score: 359.762 bits (922), Expect = 7.011e-106
Identity = 324/1182 (27.41%), Postives = 522/1182 (44.16%), Query Frame = 3
Query:   15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLT------INNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIW----LTNLEAGRRFIDEYIAINVK----DYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQI--KSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPV-----IEYIG----TFEQ-------TYLDISCQGGNTMSGGDSDVS--VTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDD-----------LDWDGLPPIGARL----------IPGKSNMYAQYSSQTEQVKVTKYKESQVGY---------VINISRNGSD-YGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            +++   + +IDSFN F+   I+ I+K  +    +      +K +   + +   + S + TR + P ECR  ++TY   + + +  T      I N+ P      +G +PIM+RS+ C L G +  E  K +E   + GGYFIVKG + ++    Q  +N  +V       VG   T    + +  R +    + + + + NT  +            P+ +I KA+  +S  E+ Q      E+  +      +      ++ Q  T    L Y+G+K R   +  +W     T +E  R  +   I  +V     ++R K   + VMV ++     D    +  D    + +   G L   +F      + + + +     + K       ++VK   +D  +I N M   +STG+         +Q      +T  ++   FI+      R    F    K S  R L P  WG +CP  TP+G  CGL+ + ++ T +            ++      V ++N +  +  +  + F+ V LNG +LG I D     +   +  +  F           E +  + ++T      +YI ++ GRL RP   +  G+P      IE +     TFE         YLD++ +    ++  +  +S   TH E+   ++    AG  PY ++N SPRN YQC M KQ+MG   Y+ R R D  +Y    PQ P+ ++KT +  + +K P G N  VA+ SY+ YD+EDA+V+N  SL+RG GRC +YK+    L     +  + V+G    + D            LD DG+   G ++          +P  +    + S+Q  Q    +Y+E  V Y          + IS N  D +   I ++  R  +IGDKFSSRHGQKGV  L +   D+P  + GI PD + NPH  PSRMTVG +IE +AGK   L  +    TAF  S  V++    L  Y Y+  G +    G  G  +++ I  G VYYQ+L+H+V DK   R  G    +TRQP +GR   GG+RLGEMERD L+ +GA+  L +R++  +SD   V  C  C                          G S  C  C++    S        +R+P   +    EL +MN+  +L +A
Sbjct:   33 KVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALP------IGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQDRKGTVGASVTS-STHEKKSRTNMIVKQGRFYLKHNTLSE----------DAPIAIIFKAMGVESDQEIVQMI--GTEEHVMAAFAPSLEE---CQKAQIFTQTQALRYIGNKVR---RQRMWGGPKKTKMEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVILAQGDNKVDDR-DYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQF-DVVKHMRQD--QITNGMVNAISTGNWSLKRFKMDRQG-----VTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPI---IKLAFNLGVEDVNLLCGEELSYPTVFL-VFLNGNILGVIRDHQKLVYTFRLMRRAGF---------INEFVSISTNLTDR---CVYISSDGGRLCRPYIIVKNGKPAVKNKHIEELSQGYRTFEDFLHESLVEYLDVNEENDCNIALYEHMISKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMG---PMLDAETRKPIWRHSILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSAQPGQ---PQYREVPVSYKGATDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK-VKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM-ISSDAFEVDVCGQCGLL-----------------------GYSGWCHYCKSSCHVS-------SLRIPYACKLLFQELQSMNIIPRLKLA 1126          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Match: polr3b (polymerase (RNA) III (DNA directed) polypeptide B [Source:ZFIN;Acc:ZDB-GENE-030131-2887])

HSP 1 Score: 359.762 bits (922), Expect = 7.011e-106
Identity = 324/1182 (27.41%), Postives = 522/1182 (44.16%), Query Frame = 3
Query:   15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLT------INNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIW----LTNLEAGRRFIDEYIAINVK----DYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQI--KSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPV-----IEYIG----TFEQ-------TYLDISCQGGNTMSGGDSDVS--VTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDD-----------LDWDGLPPIGARL----------IPGKSNMYAQYSSQTEQVKVTKYKESQVGY---------VINISRNGSD-YGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            +++   + +IDSFN F+   I+ I+K  +    +      +K +   + +   + S + TR + P ECR  ++TY   + + +  T      I N+ P      +G +PIM+RS+ C L G +  E  K +E   + GGYFIVKG + ++    Q  +N  +V       VG   T    + +  R +    + + + + NT  +            P+ +I KA+  +S  E+ Q      E+  +      +      ++ Q  T    L Y+G+K R   +  +W     T +E  R  +   I  +V     ++R K   + VMV ++     D    +  D    + +   G L   +F      + + + +     + K       ++VK   +D  +I N M   +STG+         +Q      +T  ++   FI+      R    F    K S  R L P  WG +CP  TP+G  CGL+ + ++ T +            ++      V ++N +  +  +  + F+ V LNG +LG I D     +   +  +  F           E +  + ++T      +YI ++ GRL RP   +  G+P      IE +     TFE         YLD++ +    ++  +  +S   TH E+   ++    AG  PY ++N SPRN YQC M KQ+MG   Y+ R R D  +Y    PQ P+ ++KT +  + +K P G N  VA+ SY+ YD+EDA+V+N  SL+RG GRC +YK+    L     +  + V+G    + D            LD DG+   G ++          +P  +    + S+Q  Q    +Y+E  V Y          + IS N  D +   I ++  R  +IGDKFSSRHGQKGV  L +   D+P  + GI PD + NPH  PSRMTVG +IE +AGK   L  +    TAF  S  V++    L  Y Y+  G +    G  G  +++ I  G VYYQ+L+H+V DK   R  G    +TRQP +GR   GG+RLGEMERD L+ +GA+  L +R++  +SD   V  C  C                          G S  C  C++    S        +R+P   +    EL +MN+  +L +A
Sbjct:   33 KVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALP------IGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQDRKGTVGASVTS-STHEKKSRTNMIVKQGRFYLKHNTLSE----------DAPIAIIFKAMGVESDQEIVQMI--GTEEHVMAAFAPSLEE---CQKAQIFTQTQALRYIGNKVR---RQRMWGGPKKTKMEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVILAQGDNKVDDR-DYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQF-DVVKHMRQD--QITNGMVNAISTGNWSLKRFKMDRQG-----VTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPI---IKLAFNLGVEDVNLLCGEELSYPTVFL-VFLNGNILGVIRDHQKLVYTFRLMRRAGF---------INEFVSISTNLTDR---CVYISSDGGRLCRPYIIVKNGKPAVKNKHIEELSQGYRTFEDFLHESLVEYLDVNEENDCNIALYEHMISKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMG---PMLDAETRKPIWRHSILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSAQPGQ---PQYREVPVSYKGATDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK-VKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM-ISSDAFEVDVCGQCGLL-----------------------GYSGWCHYCKSSCHVS-------SLRIPYACKLLFQELQSMNIIPRLKLA 1126          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Match: polr2b (polymerase (RNA) II (DNA directed) polypeptide B [Source:ZFIN;Acc:ZDB-GENE-041008-1])

HSP 1 Score: 298.901 bits (764), Expect = 4.261e-84
Identity = 226/827 (27.33%), Postives = 384/827 (46.43%), Query Frame = 3
Query: 1041 GSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSV-THQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYV------------IDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARL-----IPGKSNMYAQYSSQ--------TEQVKVTKYKESQVGYVINISRNGSDYGATIC---IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQL 3350
            G L   +FR    N L  +    + F+ +  +  ++  +K+       I + + Y L+TG+ G +     +   G+  + + + F   +++ R  +      D K +  R+L    WG VCP  TP+G   GL+ + ++   +   +  S   + LE +  +++ E++   + AD ++   + +NG  +G   D   ++  N +R  +          R  +II   +S I   +   I I+T++GR+ RP+                           +  +    V+EYI T E+  + ++    +    G +  S  TH E+    +    A   P+ ++N SPRN YQ  M KQ+MG    +   R D   +    PQ PL  +++ +    ++ P G N IVAIASYT Y+ ED++++N ++++RG  R   Y+ Y             I   P R    E+  G  + ++D LD DGL   G R+     I GK+    +   +        T++   T  + S+ G V  +    +  G   C   ++  R   IGDKF+SRHGQKG   ++ +  D+P + +GI PD + NPH+IPSRMTVG +IE + GK++A   +  D+T F  +  V++    L  Y Y   G E  Y+G+ GR + S+I +G  YYQRL+H+V+DK   R  G +  + RQP++GR   GG+R GEMERD  ++HGA   L++R+ +  SD   V  C+ C     +  R                  +++ C+ C N  + S        VR+P   +    EL +M++  ++
Sbjct:  397 GPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRI-----ISDGLKYSLATGNWGDVK-KAHQARAGVSQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISP-AAIADATK---IFVNGCWVGIHKD--PEQLMNTLRKLR----------RQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTR----ETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEA-SDPYQVHVCNLCGLMAIANTRT-----------------HTYECRGCRNKTQISL-------VRMPYACKLLFQELMSMSIAPRM 1171          

HSP 2 Score: 53.9138 bits (128), Expect = 1.384e-6
Identity = 47/156 (30.13%), Postives = 75/156 (48.08%), Query Frame = 3
Query:   27 FTRDYIDSFNAFLKPGIRNILKHLKP----TEFELGTGE-----RXXXXXXXXXXQKP-KCSIDNTRN-IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET-----VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVML 446
              R  +DSF+ F++  ++ I++   P     E +  +GE     R  +  E I + KP     D   + + P E R  NLTY   + + +T TI     E          +G IPIM+RS  C L GL+  +L + +E   + GGYFI+ G++ +L
Sbjct:   39 LVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVL 194          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Match: POLR1B (polymerase (RNA) I polypeptide B [Source:NCBI gene;Acc:100485503])

HSP 1 Score: 723.005 bits (1865), Expect = 0.000e+0
Identity = 433/1135 (38.15%), Postives = 641/1135 (56.48%), Query Frame = 3
Query:   18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQK--PKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQK-VGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIV-EVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPD-RGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYG----ATICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVP--WHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            +QD TR +IDSFN  +  G+   ++ +KP EF     +    +++ +I     PK SI   + IYP ECR    TY GK+   ++ ++N      I +T+G IPIM++S  C+L+ L+ ++L++HHEE+ E+GGYFI+ G + ++R L+  RRNFP+   +P  K  G   T +   +RCVRD+ T   + L + +N    +     K+ F IPL   +KAL + S  ++F +  K KE+ S   + +T M             NV  L+YLG +FR    +P W T+ +A    I + I I++K   EK+ ++ +M  KL +F  D C +E+ D+L +QE++TPG L     +  + ++L  V  N+     K +     E +   F  +  +     YLL+TG+L   T  G+ Q++GL ++ D +NF R++++FR  HRGA F  M+++++RRLLPESWGF+CPVHTPDG PCGL+NH +    +    + +     L   L  + ++    K FAD     C  VML+G ++G++    A    + +R  KV    E  VP  TEI+   ++  A+ +PG+++FT   R++RPV N+  G+   E +GT EQ +L+++   G+ + G       THQE    S+ S  A F P+ ++N SPRN+YQCQM KQ+MG+   + + RSDNKLY    PQ PL R   YD + M   P+G N IVA+ SYT YDMEDAMV+N +S ERG    ++YK   +DL+   +   D  V G      +V   LD DGLP +GA L  G    Y   +  T +  V  YK  +   + NI    +D G     ++C+  ++ RN  IGDKF+SRHGQKG+ S    + D+P +E G+VPD LFNPH  PSRMT+GM+IE +AGK AAL     D+T F  S+    +E +   LR+  Y+ +G E+ Y G  G  ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QPV GR V GGIR GEMERD LL+HG +F L DR+ +C SD+     C  C S +     P LE+ P  W +   N KH     C++C+         + +  V VP V R+F+ EL  MN+ V+LSV+
Sbjct:   35 LQDITRAHIDSFNQAMTEGLSLAVQAMKPLEFTYKNDKVALQIVDAVITPPLVPKGSICKEQKIYPAECRGRRSTYRGKLTADVSWSLNGLQKGIIKQTLGHIPIMVKSKFCNLYDLNPKQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKNRGPGYTQYGISLRCVRDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFALKALVDYSDYQIFTELIKGKEENSFYRDCMTQMLRAVVEEGCHSQKNV--LKYLGERFRVKFYLPDWFTDEQAAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEENPDSLMYQEVMTPGQLLLMFLKEKMESWLLGVKVNLDKRAHKYTVDLSTETMMKVFTSTSDLTKTCEYLLATGNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEIVTQTSYNTLLPLLLCSLGMTPVDGTAGKLFAD-----CYPVMLDGAMVGWVEKTIAPGLVSALRNYKV--KHEKNVPPWTEIVLIPMTGKASLYPGLFLFTTPCRMVRPVRNLALGKE--ELLGTLEQVFLNVAVYEGDIVPG-----ETTHQEFFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSDNKLYRLQTPQSPLVRPSMYDYYEMDNYPIGTNAIVAVISYTGYDMEDAMVLNKSSWERGFAHGSVYKTDHVDLSKKLKDGEDNLVFGIKPDDERVKGRLDSDGLPAVGAVLQFGDP-YYGYLNLNTGESFVAYYKSKENCVIDNIKICSNDIGFGKFKSVCVTMRIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALEYFGEMLRAGGYNFYGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSTAHVCIECGSLL----SPFLEKPPPSW-SSIRNRKH----HCEVCDR-------TDTVETVSVPYVFRYFVAELAAMNISVKLSVS 1135          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Match: POLR1B (polymerase (RNA) I polypeptide B [Source:NCBI gene;Acc:100485503])

HSP 1 Score: 722.62 bits (1864), Expect = 0.000e+0
Identity = 433/1135 (38.15%), Postives = 641/1135 (56.48%), Query Frame = 3
Query:   18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQK--PKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQK-VGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIV-EVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPD-RGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYG----ATICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVP--WHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            +QD TR +IDSFN  +  G+   ++ +KP EF     +    +++ +I     PK SI   + IYP ECR    TY GK+   ++ ++N      I +T+G IPIM++S  C+L+ L+ ++L++HHEE+ E+GGYFI+ G + ++R L+  RRNFP+   +P  K  G   T +   +RCVRD+ T   + L + +N    +     K+ F IPL   +KAL + S  ++F +  K KE+ S   + +T M             NV  L+YLG +FR    +P W T+ +A    I + I I++K   EK+ ++ +M  KL +F  D C +E+ D+L +QE++TPG L     +  + ++L  V  N+     K +     E +   F  +  +     YLL+TG+L   T  G+ Q++GL ++ D +NF R++++FR  HRGA F  M+++++RRLLPESWGF+CPVHTPDG PCGL+NH +    +    + +     L   L  + ++    K FAD     C  VML+G ++G++    A    + +R  KV    E  VP  TEI+   ++  A+ +PG+++FT   R++RPV N+  G+   E +GT EQ +L+++   G+ + G       THQE    S+ S  A F P+ ++N SPRN+YQCQM KQ+MG+   + + RSDNKLY    PQ PL R   YD + M   P+G N IVA+ SYT YDMEDAMV+N +S ERG    ++YK   +DL+   +   D  V G      +V   LD DGLP +GA L  G    Y   +  T +  V  YK  +   + NI    +D G     ++C+  ++ RN  IGDKF+SRHGQKG+ S    + D+P +E G+VPD LFNPH  PSRMT+GM+IE +AGK AAL     D+T F  S+    +E +   LR+  Y+ +G E+ Y G  G  ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QPV GR V GGIR GEMERD LL+HG +F L DR+ +C SD+     C  C S +     P LE+ P  W +   N KH     C++C+         + +  V VP V R+F+ EL  MN+ V+LSV+
Sbjct:   41 LQDITRAHIDSFNQAMTEGLSLAVQAMKPLEFTYKNDKVALQIVDAVITPPLVPKGSICKEQKIYPAECRGRRSTYRGKLTADVSWSLNGLQKGIIKQTLGHIPIMVKSKFCNLYDLNPKQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKNRGPGYTQYGISLRCVRDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFALKALVDYSDYQIFTELIKGKEENSFYRDCMTQMLRAVVEEGCHSQKNV--LKYLGERFRVKFYLPDWFTDEQAAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEENPDSLMYQEVMTPGQLLLMFLKEKMESWLLGVKVNLDKRAHKYTVDLSTETMMKVFTSTSDLTKTCEYLLATGNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEIVTQTSYNTLLPLLLCSLGMTPVDGTAGKLFAD-----CYPVMLDGAMVGWVEKTIAPGLVSALRNYKV--KHEKNVPPWTEIVLIPMTGKASLYPGLFLFTTPCRMVRPVRNLALGKE--ELLGTLEQVFLNVAVYEGDIVPG-----ETTHQEFFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSDNKLYRLQTPQSPLVRPSMYDYYEMDNYPIGTNAIVAVISYTGYDMEDAMVLNKSSWERGFAHGSVYKTDHVDLSKKLKDGEDNLVFGIKPDDERVKGRLDSDGLPAVGAVLQFGDP-YYGYLNLNTGESFVAYYKSKENCVIDNIKICSNDIGFGKFKSVCVTMRIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALEYFGEMLRAGGYNFYGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSTAHVCIECGSLL----SPFLEKPPPSW-SSIRNRKH----HCEVCDR-------TDTVETVSVPYVFRYFVAELAAMNISVKLSVS 1141          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Match: POLR1B (polymerase (RNA) I polypeptide B [Source:NCBI gene;Acc:100485503])

HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0
Identity = 410/1137 (36.06%), Postives = 606/1137 (53.30%), Query Frame = 3
Query:   18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEEL----IKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQK-VGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIV-EVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPD-RGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYG----ATICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVP--WHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            +QD TR +IDSFN  +  G+   ++ +KP EF                                        TY+           N+     I + V T P++ + ++C    +   E       +  +  E+GGYFI+ G + ++R L+  RRNFP+   +P  K  G   T +   +RCVRD+ T   + L + +N    +     K+ F IPL   +KAL + S  ++F +  K KE+ S   + +T M             NV  L+YLG +FR    +P W T+ +A    I + I I++K   EK+ ++ +M  KL +F  D C +E+ D+L +QE++TPG L     +  + ++L  V  N+     K +     E +   F  +  +     YLL+TG+L   T  G+ Q++GL ++ D +NF R++++FR  HRGA F  M+++++RRLLPESWGF+CPVHTPDG PCGL+NH +    +    + +     L   L  + ++    K FAD     C  VML+G ++G++    A    + +R  KV    E  VP  TEI+   ++  A+ +PG+++FT   R++RPV N+  G+   E +GT EQ +L+++   G+ + G       THQE    S+ S  A F P+ ++N SPRN+YQCQM KQ+MG+   + + RSDNKLY    PQ PL R   YD + M   P+G N IVA+ SYT YDMEDAMV+N +S ERG    ++YK   +DL+   +   D  V G      +V   LD DGLP +GA L  G    Y   +  T +  V  YK  +   + NI    +D G     ++C+  ++ RN  IGDKF+SRHGQKG+ S    + D+P +E G+VPD LFNPH  PSRMT+GM+IE +AGK AAL     D+T F  S+    +E +   LR+  Y+ +G E+ Y G  G  ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QPV GR V GGIR GEMERD LL+HG +F L DR+ +C SD+     C  C S +     P LE+ P  W +   N KH     C++C+         + +  V VP V R+F+ EL  MN+ V+LSV+
Sbjct:   35 LQDITRAHIDSFNQAMTEGLSLAVQAMKPLEF----------------------------------------TYK-----------NDKVALQIVDAVITPPLVPKGSICKEQKIYPAECRGRRSTYRGKLTEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKNRGPGYTQYGISLRCVRDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFALKALVDYSDYQIFTELIKGKEENSFYRDCMTQMLRAVVEEGCHSQKNV--LKYLGERFRVKFYLPDWFTDEQAAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEENPDSLMYQEVMTPGQLLLMFLKEKMESWLLGVKVNLDKRAHKYTVDLSTETMMKVFTSTSDLTKTCEYLLATGNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEIVTQTSYNTLLPLLLCSLGMTPVDGTAGKLFAD-----CYPVMLDGAMVGWVEKTIAPGLVSALRNYKV--KHEKNVPPWTEIVLIPMTGKASLYPGLFLFTTPCRMVRPVRNLALGKE--ELLGTLEQVFLNVAVYEGDIVPG-----ETTHQEFFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSDNKLYRLQTPQSPLVRPSMYDYYEMDNYPIGTNAIVAVISYTGYDMEDAMVLNKSSWERGFAHGSVYKTDHVDLSKKLKDGEDNLVFGIKPDDERVKGRLDSDGLPAVGAVLQFGDP-YYGYLNLNTGESFVAYYKSKENCVIDNIKICSNDIGFGKFKSVCVTMRIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALEYFGEMLRAGGYNFYGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSTAHVCIECGSLL----SPFLEKPPPSW-SSIRNRKH----HCEVCDR-------TDTVETVSVPYVFRYFVAELAAMNISVKLSVS 1086          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Match: POLR1B (polymerase (RNA) I polypeptide B [Source:NCBI gene;Acc:100485503])

HSP 1 Score: 390.963 bits (1003), Expect = 6.032e-121
Identity = 236/677 (34.86%), Postives = 375/677 (55.39%), Query Frame = 3
Query:   18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQK--PKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQK-VGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIV-EVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQS 2030
            +QD TR +IDSFN  +  G+   ++ +KP EF     +    +++ +I     PK SI   + IYP ECR    TY GK+   ++ ++N      I +T+G IPIM++S  C+L+ L+ ++L++HHEE+ E+GGYFI+ G + ++R L+  RRNFP+   +P  K  G   T +   +RCVRD+ T   + L + +N    +     K+ F IPL   +KAL + S  ++F +  K KE+ S   + +T M             NV  L+YLG +FR    +P W T+ +A    I + I I++K   EK+ ++ +M  KL +F  D C +E+ D+L +QE++TPG L     +  + ++L  V  N+     K +     E +   F  +  +     YLL+TG+L   T  G+ Q++GL ++ D +NF R++++FR  HRGA F  M+++++RRLLPESWGF+CPVHTPDG PCGL+NH +    +    + +     L   L  + ++    K FAD     C  VML+G ++G++    A    + +R  KV    E  VP  TEI+   ++  A+ +PG+++FT   R++RPV N+  G+   E +GT EQ +L+++   G+ + G       THQE    S+ S  A F P+ ++N SPRN+YQCQM K S
Sbjct:   35 LQDITRAHIDSFNQAMTEGLSLAVQAMKPLEFTYKNDKVALQIVDAVITPPLVPKGSICKEQKIYPAECRGRRSTYRGKLTADVSWSLNGLQKGIIKQTLGHIPIMVKSKFCNLYDLNPKQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKNRGPGYTQYGISLRCVRDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFALKALVDYSDYQIFTELIKGKEENSFYRDCMTQMLRAVVEEGCHSQKNV--LKYLGERFRVKFYLPDWFTDEQAAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEENPDSLMYQEVMTPGQLLLMFLKEKMESWLLGVKVNLDKRAHKYTVDLSTETMMKVFTSTSDLTKTCEYLLATGNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEIVTQTSYNTLLPLLLCSLGMTPVDGTAGKLFAD-----CYPVMLDGAMVGWVEKTIAPGLVSALRNYKV--KHEKNVPPWTEIVLIPMTGKASLYPGLFLFTTPCRMVRPVRNLALGKE--ELLGTLEQVFLNVAVYEGDIVPG-----ETTHQEFFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKSS 695          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Match: POLR1B (polymerase (RNA) I polypeptide B [Source:NCBI gene;Acc:100485503])

HSP 1 Score: 383.645 bits (984), Expect = 8.663e-115
Identity = 221/520 (42.50%), Postives = 302/520 (58.08%), Query Frame = 3
Query: 1845 QTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPD-RGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYG----ATICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVP--WHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            + +L+++   G+ + G       THQE    S+ S  A F P+ ++N SPRN+YQCQM KQ+MG+   + + RSDNKLY    PQ PL R   YD + M   P+G N IVA+ SYT YDMEDAMV+N +S ERG    ++YK   +DL+   +   D  V G      +V   LD DGLP +GA L  G    Y   +  T +  V  YK  +   + NI    +D G     ++C+  ++ RN  IGDKF+SRHGQKG+ S    + D+P +E G+VPD LFNPH  PSRMT+GM+IE +AGK AAL     D+T F  S+    +E +   LR+  Y+ +G E+ Y G  G  ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QPV GR V GGIR GEMERD LL+HG +F L DR+ +C SD+     C  C S +     P LE+ P  W +   N KH     C++C+         + +  V VP V R+F+ EL  MN+ V+LSV+
Sbjct:  582 KVFLNVAVYEGDIVPG-----ETTHQEFFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSDNKLYRLQTPQSPLVRPSMYDYYEMDNYPIGTNAIVAVISYTGYDMEDAMVLNKSSWERGFAHGSVYKTDHVDLSKKLKDGEDNLVFGIKPDDERVKGRLDSDGLPAVGAVLQFGDP-YYGYLNLNTGESFVAYYKSKENCVIDNIKICSNDIGFGKFKSVCVTMRIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALEYFGEMLRAGGYNFYGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSTAHVCIECGSLL----SPFLEKPPPSW-SSIRNRKH----HCEVCDR-------TDTVETVSVPYVFRYFVAELAAMNISVKLSVS 1078          

HSP 2 Score: 313.923 bits (803), Expect = 9.558e-90
Identity = 191/557 (34.29%), Postives = 306/557 (54.94%), Query Frame = 3
Query:   18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQK--PKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQK-VGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIV-EVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVF 1670
            +QD TR +IDSFN  +  G+   ++ +KP EF     +    +++ +I     PK SI   + IYP ECR    TY GK+   ++ ++N      I +T+G IPIM++S  C+L+ L+ ++L++HHEE+ E+GGYFI+ G + ++R L+  RRNFP+   +P  K  G   T +   +RCVRD+ T   + L + +N    +     K+ F IPL   +KAL + S  ++F +  K KE+ S   + +T M             NV  L+YLG +FR    +P W T+ +A    I + I I++K   EK+ ++ +M  KL +F  D C +E+ D+L +QE++TPG L     +  + ++L  V  N+     K +     E +   F  +  +     YLL+TG+L   T  G+ Q++GL ++ D +NF R++++FR  HRGA F  M+++++RRLLPESWGF+CPVHTPDG PCGL+NH +    +    + +     L   L  + ++    K FAD     C  VML+G ++G++    A    + +R  KVF
Sbjct:   35 LQDITRAHIDSFNQAMTEGLSLAVQAMKPLEFTYKNDKVALQIVDAVITPPLVPKGSICKEQKIYPAECRGRRSTYRGKLTADVSWSLNGLQKGIIKQTLGHIPIMVKSKFCNLYDLNPKQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKNRGPGYTQYGISLRCVRDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFALKALVDYSDYQIFTELIKGKEENSFYRDCMTQMLRAVVEEGCHSQKNV--LKYLGERFRVKFYLPDWFTDEQAAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEENPDSLMYQEVMTPGQLLLMFLKEKMESWLLGVKVNLDKRAHKYTVDLSTETMMKVFTSTSDLTKTCEYLLATGNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEIVTQTSYNTLLPLLLCSLGMTPVDGTAGKLFAD-----CYPVMLDGAMVGWVEKTIAPGLVSALRNYKVF 584          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Match: Polr1b (polymerase (RNA) I polypeptide B [Source:MGI Symbol;Acc:MGI:108014])

HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 429/1143 (37.53%), Postives = 643/1143 (56.26%), Query Frame = 3
Query:    6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKED-----FSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEI----VKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPD-RGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
            +K  +QD TR ++DSFN     G+ + ++ + P EF     ERI + I + +I  P   K +I    N+YP ECR    TY G++   ++  +N      I + +G +PIM++S LC+L+ L    LI+HHEE +E+GGYFI+ G + ++R L+  RRNFP+   +P  K  G   T     +RCVR++ +   + L + +N    L     K+ F +PL   +KAL + S  ++FQ+  K KE+      S+ ++L ++  +    ++Q       L YLG  FR  L +P W  N+EA    +++ I I+++   +K+ L+ +M  KL +    +C  ++ D+L  QE+L+PG LF    +  + N+L ++    KI + K + K    I    +   F     +  P  YLL+TG+L   T  G  Q++GL ++ D +NF R++++FR  HRGA F  M+++T+RRLLPESWGF+CPVHTPDG PCGLLNH +    V      +    +L   L  + ++    + ++D      V+L+G ++G++    A E A+ +R  KV    E  +P   E+    ++   + +PG+++FT   RL+RPV N+  G    E IGT EQ +++++    + + GG S    THQEL   S+ S  A F P+ ++N SPRN+YQCQM KQ+MG+   + + RSDNKLY    PQ PL R   YD ++M   P+G N IVA+ SYT YDMEDAM++N  S ERG    ++YK   IDL+   +   D  V G      +V   LD DGLP IGA+L  G    Y+  +  T +  V  YK  +   V NI    +D G+     ICI  ++ RN  IGDKF+SRHGQKG+ S      D+P +E G++PD LFNPH  PSRMT+GM+IE +AGK AAL     D+T F   + +  +E +   L++  Y+ +G ER Y G  G  ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ +   C  C S +     P+LE+ P    + +A     + C +C         ++ +  V VP V R+F+ EL  MN+KV+L V
Sbjct:   31 QKAALQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAF-KDERISLTIVDAVISPPSVPKGTICKDLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQV------LNYLGECFRVKLSLPDWYPNVEAAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSI----KIVLDKRAQKANVSINNENLMKIFSMGTELTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDTAPCRPYSDCYP---VLLDGVMVGWVDKDLAPEVADTLRRFKVLR--EKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGRE--ELIGTMEQLFMNVAIFE-DEVFGGIS----THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLEYGDP-YYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAHMCVECGSLL----SPLLEKPP---PSWSAMRNRKYNCTVCGR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Match: Polr1b (polymerase (RNA) I polypeptide B [Source:MGI Symbol;Acc:MGI:108014])

HSP 1 Score: 389.037 bits (998), Expect = 5.127e-120
Identity = 232/687 (33.77%), Postives = 376/687 (54.73%), Query Frame = 3
Query:    6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKED-----FSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEI----VKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQ 2027
            +K  +QD TR ++DSFN     G+ + ++ + P EF     ERI + I + +I  P   K +I    N+YP ECR    TY G++   ++  +N      I + +G +PIM++S LC+L+ L    LI+HHEE +E+GGYFI+ G + ++R L+  RRNFP+   +P  K  G   T     +RCVR++ +   + L + +N    L     K+ F +PL   +KAL + S  ++FQ+  K KE+      S+ ++L ++  +    ++Q       L YLG  FR  L +P W  N+EA    +++ I I+++   +K+ L+ +M  KL +    +C  ++ D+L  QE+L+PG LF    +  + N+L ++    KI + K + K    I    +   F     +  P  YLL+TG+L   T  G  Q++GL ++ D +NF R++++FR  HRGA F  M+++T+RRLLPESWGF+CPVHTPDG PCGLLNH +    V      +    +L   L  + ++    + ++D      V+L+G ++G++    A E A+ +R  KV  +    +P   E+    ++   + +PG+++FT   RL+RPV N+  G    E IGT EQ +++++    + + GG S    THQEL   S+ S  A F P+ ++N SPRN+YQCQM  Q
Sbjct:   31 QKAALQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAF-KDERISLTIVDAVISPPSVPKGTICKDLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQV------LNYLGECFRVKLSLPDWYPNVEAAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSI----KIVLDKRAQKANVSINNENLMKIFSMGTELTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDTAPCRPYSDCYP---VLLDGVMVGWVDKDLAPEVADTLRRFKVLREKR--IPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGRE--ELIGTMEQLFMNVAI-FEDEVFGGIS----THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGLQ 694          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Match: Polr3b (polymerase (RNA) III (DNA directed) polypeptide B [Source:MGI Symbol;Acc:MGI:1917678])

HSP 1 Score: 355.91 bits (912), Expect = 2.306e-104
Identity = 323/1185 (27.26%), Postives = 523/1185 (44.14%), Query Frame = 3
Query:   15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLT------INNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKF--STRERQFTTNVSCLEYLGSKFREFLKMPIW-----LTNLEAGRRFIDEYIAINVK----DYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQI--KSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISI-TAAQFPGIYIFTNSGRLLRPVYNIMFGEPVI----------------EYIGTFEQTYLDISCQGGNTMSGGDSDVS--VTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDD-----------LDWDGLPPIGARL----------------IPGKSNMYAQYSSQTEQVKVTKYKESQVGYV--INISRNGSD-YGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            +++   + +IDSFN F+   I+ I+K  +    +      +K +   + +   + S + TR + P ECR  ++TY   + + +  T      I N+ P      +G +PIM+RS+ C L G +  E  K +E   + GGYFIVKG + ++    Q  +N  +V+      VG   T    + +  R +    + + + R NT  +           IP+ +I KA+  +S  E+ Q            E +   F       ++ Q  T +  L+Y+G+K R   +  +W      T +E  R  +   I  +V     ++R K     VMV ++     D    +  D    + +   G L   +F      + + + +     + K       ++VK   +D  +I N M   +STG+         +Q      +T  ++   +I+      R    F    K S  R L P  WG +CP  TP+G  CGL+ + ++ T +                    V ++N +  +  +  + F+ V LNG +LG I D           +KK+     L+  R    I + +SI T      +YI ++ GRL RP   +   +P +                +++      YLD++ +    ++  +  ++   TH E+   ++    AG  PY ++N SPRN YQC M KQ+MG   Y+ R R D  +Y    PQ P+ ++KT +  + +K P G N  VA+ SY+ YD+EDA+V+N  SL+RG GRC +YK+    L     +  + V+G    + D            LD DG+   G ++                IP + +   Q   Q + V +T YK +   Y+  + IS N  D +   + ++  R  +IGDKFSSRHGQKGV  L +   D+P  + GI PD + NPH  PSRMTVG +IE +AGK   L  +    TAF  S  V++    L  + Y+  G +    G  G  +++ I  G VYYQ+L+H+V DK   R  G    +TRQP +GR   GG+RLGEMERD L+ +GA+  L +R++  +SD   V  C  C                          G S  C  C++    S        +R+P   +    EL +MN+  +L +A
Sbjct:   35 KVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALP------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGAVGASVTS-STHEKKSRTNMAVKQGRFYLRHNTLSE----------DIPIVIIFKAMGVESDQEIVQMI-------GTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVR---RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDR-DYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF-DVVKHMRQD--QITNGMVNAISTGNWSLKRFKMDRQG-----VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNL---GVEDVNLLCGEELSYPNVFL-VFLNGNILGVIRD-----------HKKLVSTFRLM--RRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMG---PMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ-QPQYKDVPIT-YKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK-VKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM-ISSDAFEVDVCGQCGLL-----------------------GYSGWCHYCKSSCHVS-------SLRIPYACKLLFQELQSMNIIPRLKLA 1129          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Match: Polr2b (polymerase (RNA) II (DNA directed) polypeptide B [Source:MGI Symbol;Acc:MGI:2388280])

HSP 1 Score: 294.278 bits (752), Expect = 1.605e-82
Identity = 224/824 (27.18%), Postives = 380/824 (46.12%), Query Frame = 3
Query: 1041 GSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSV-THQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVI---------GCGNKVFDDLDWDGLPPIGARL-----IPGKSNMYAQYSSQTEQVK--------VTKYKESQVGYVINISRNGSDYGATIC---IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQL 3350
            G L   +FR    N L  V    + F+ +  +  ++  +K+       I + + Y L+TG+ G       +   G+  + + + F   +++ R  +      D K +  R+L    WG VCP  TP+G   GL+ + ++   +   +  S   + LE +  +++ E++   + AD ++   + +NG  +G   D   ++  N +R  +          R  +II   +S I   +   I I+T++GR+ RP+                           +  +    V+EYI T E+  + ++    +      +  S  TH E+    +    A   P+ ++N SPRN YQ  M KQ+MG    +   R D   +    PQ PL  +++ +    ++ P G N IVAIASYT Y+ ED++++N ++++RG  R   Y+ Y  +    +G   E V          G  + +++ LD DGL   G R+     I GK+    +   + E            T  + S+ G V  +    +  G   C   ++  R   IGDKF+SRHGQKG   ++ +  D+P + +GI PD + NPH+IPSRMT+G +IE + GK++A   +  D+T F  +  V++    L  Y Y   G E  Y+G+ GR + S+I +G  YYQRL+H+V+DK   R  G I  + RQP++GR   GG+R GEMERD  ++HGA   L++R+ +  SD   V  C+ C     +  R                  +++ C+ C N  + S        VR+P   +    EL +M++  ++
Sbjct:  397 GPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRI-----ISDGLKYSLATGNWGD-QKKAHQARAGVSQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISP-AAIADATK---IFVNGCWVGIHKD--PEQLMNTLRKLR----------RQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK-EQESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEA-SDPYQVHVCNLCGIMAIANTRT-----------------HTYECRGCRNKTQISL-------VRMPYACKLLFQELMSMSIAPRM 1171          

HSP 2 Score: 56.6102 bits (135), Expect = 2.203e-7
Identity = 46/156 (29.49%), Postives = 77/156 (49.36%), Query Frame = 3
Query:   27 FTRDYIDSFNAFLKPGIRNILKHLKP----TEFELGTGE-----RXXXXXXXXXXQKP-KCSIDNTRN-IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET-----VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVML 446
              R  +DSF+ F++  ++ I++   P     E +  +GE     R  +  E I + KP     D   + + P E R  NLTY   + + +T T+     E +        +G IPIM+RS  C L+GL+  +L + +E   + GGYFI+ G++ +L
Sbjct:   39 LVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVL 194          
BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Match: sp|Q9H9Y6|RPA2_HUMAN (DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens OX=9606 GN=POLR1B PE=1 SV=2)

HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 424/1135 (37.36%), Postives = 634/1135 (55.86%), Query Frame = 3
Query:    6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV---IGCGN-KVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            +K  +Q+ TR +++SFN  +  G+   ++ + P EF     ERI   I + +I  P   K +I    N+YP ECR    TY GK+   +   +N  +   I + +G +PIM++S LC+L  L  + LI+HHEE +E+GGYFI+ G + ++R L+  RRNFP+   +P  K  G   T +   + CVR++ +   + L + +N    L     K+ F +PL   +KAL + S  ++FQ+  K KED S +        +    E   +T    L YLG  FR  L +P W  N +A     ++ I I++K   EK+ ++ +M  KL +    +C +++ D+L  QE+LTPG LF    +  L  +L ++         K S     + +   F     +  P  YL +TG+L   T  G+ Q++GL ++ D +NF R++++FR  HRGA F  M+++T+RRLLPESWGF+CPVHTPDG PCGL+NH +    V      +    +L   L  + ++    +S+   S+   V+L+G ++G++    A   A+ +R+ KV    E  +P   E++   ++   + +PG+++FT   RL+RPV N+  G+   E IGT EQ +++++       +G       THQEL   S+ S  A F P+ ++N SPRN+YQCQM KQ+MG+   + + RSDNKLY    PQ PL R   YD ++M   P+G N IVA+ SYT YDMEDAM++N  S ERG    ++YK   IDL+    + D S+   I  G+ +V   LD DGLP IGA+L  G    Y+  +  T +  V  YK  +   V NI    +D G+     +CI  ++ RN  IGDKF+SRHGQKG+ S      D+P +E G+VPD LFNPH  PSRMT+GM+IE +AGK AAL     D+T F   + +  +E +   L++  Y+ +G ER Y G  G  ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ +   C  C S +     P+LE+ P    + +A     + C LC         ++ +  V VP V R+F+ EL  MN+KV+L V 
Sbjct:   31 QKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAF-KDERISFTILDAVISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRI-VMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHRSY---SECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLR--EKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKE--ELIGTMEQIFMNVAIFEDEVFAG-----VTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDP-YYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAHVCVKCGSLL----SPLLEKPP---PSWSAMRNRKYNCTLCSR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 1135          
BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Match: sp|P70700|RPA2_MOUSE (DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus OX=10090 GN=Polr1b PE=1 SV=2)

HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 429/1143 (37.53%), Postives = 643/1143 (56.26%), Query Frame = 3
Query:    6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKED-----FSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEI----VKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPD-RGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
            +K  +QD TR ++DSFN     G+ + ++ + P EF     ERI + I + +I  P   K +I    N+YP ECR    TY G++   ++  +N      I + +G +PIM++S LC+L+ L    LI+HHEE +E+GGYFI+ G + ++R L+  RRNFP+   +P  K  G   T     +RCVR++ +   + L + +N    L     K+ F +PL   +KAL + S  ++FQ+  K KE+      S+ ++L ++  +    ++Q       L YLG  FR  L +P W  N+EA    +++ I I+++   +K+ L+ +M  KL +    +C  ++ D+L  QE+L+PG LF    +  + N+L ++    KI + K + K    I    +   F     +  P  YLL+TG+L   T  G  Q++GL ++ D +NF R++++FR  HRGA F  M+++T+RRLLPESWGF+CPVHTPDG PCGLLNH +    V      +    +L   L  + ++    + ++D      V+L+G ++G++    A E A+ +R  KV    E  +P   E+    ++   + +PG+++FT   RL+RPV N+  G    E IGT EQ +++++    + + GG S    THQEL   S+ S  A F P+ ++N SPRN+YQCQM KQ+MG+   + + RSDNKLY    PQ PL R   YD ++M   P+G N IVA+ SYT YDMEDAM++N  S ERG    ++YK   IDL+   +   D  V G      +V   LD DGLP IGA+L  G    Y+  +  T +  V  YK  +   V NI    +D G+     ICI  ++ RN  IGDKF+SRHGQKG+ S      D+P +E G++PD LFNPH  PSRMT+GM+IE +AGK AAL     D+T F   + +  +E +   L++  Y+ +G ER Y G  G  ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QP+ GR V GGIR GEMERD LL+HG +F L DR+ +C SD+ +   C  C S +     P+LE+ P    + +A     + C +C         ++ +  V VP V R+F+ EL  MN+KV+L V
Sbjct:   31 QKAALQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAF-KDERISLTIVDAVISPPSVPKGTICKDLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQV------LNYLGECFRVKLSLPDWYPNVEAAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSI----KIVLDKRAQKANVSINNENLMKIFSMGTELTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDTAPCRPYSDCYP---VLLDGVMVGWVDKDLAPEVADTLRRFKVLR--EKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGRE--ELIGTMEQLFMNVAIFE-DEVFGGIS----THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLEYGDP-YYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNC-SDRSVAHMCVECGSLL----SPLLEKPP---PSWSAMRNRKYNCTVCGR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134          
BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Match: sp|Q5REE8|RPA2_PONAB (DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii OX=9601 GN=POLR1B PE=2 SV=1)

HSP 1 Score: 721.079 bits (1860), Expect = 0.000e+0
Identity = 423/1140 (37.11%), Postives = 638/1140 (55.96%), Query Frame = 3
Query:    6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEI----VKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVI----GCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA----TICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAF---QTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGAT-FCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            +K  +Q+ TR +++SFN  +  G+   ++ + P EF     ERI   I + +I  P   K +I    ++YP ECR    TY GK+   ++  +N  +   I + +G +PIM++S LC+L+ L  + LI+HHEE +E+GGYFI+ G + ++R L+  RRNFP+   +P  K  G   T +   + CVR++ +   + L + +N    L     K+ F +PL   +KAL + S  ++FQ+  K KED S +        +    E   +T    L YLG  FR  L +P W  N +A     ++ I I++K   EK+ ++ +M  KL +    +C +++ D+L  QE+LTPG LF    +  L  +L ++    KI   K + K    +    +   F     +  P  YL +TG+L   T  G+ Q++GL ++ D +NF R++++FR  HRGA F  M+++T+RRLLPESWGF+CPVHTPDG PCGL+NH +    V      +    +L   L  + ++    +S+   S+   V+L+G ++G++    A   A+ +R+ KV    E  +P  TE++   ++   + +PG+++FT   RL+RPV N+  G+   E IGT EQ +++++       +G       THQEL   S+ S  A F P+ ++N SPRN+YQCQM KQ+MG+   + + RSDNKLY    PQ PL R   YD ++M   P+G N IVA+ SYT YDMEDAM++N  S ERG    ++YK   IDL+    + D S++        ++   LD DGLP IGA+L  G    Y+  +  T +  V  YK  +   V NI    +D G+     +CI  ++ RN  IGDKF+SRHGQKG+ S      D+P +E G+VPD LFNPH  PSRMT+GM+IE +AGK AAL     D+T F   + +  +E +   L++  Y+ +G ER Y G  G  ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QP+ GR V GGIR GEMERD LL+HG + F L DR+ +C SD+ +   C  C S +     P+LE+ P    + +A     + C LC         ++ +  V VP V R+F+ EL  MN+KV+L V 
Sbjct:   31 QKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAF-KDERISFTILDAVISPPTVPKGTICKEVSVYPAECRGRRCTYRGKLTADISWAVNGISKGIIKQFLGYVPIMVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTHYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRI-VMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSI----KIAFDKKAQKTNVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHRSY---SECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLR--EKRIPPWTEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKE--ELIGTMEQIFMNVAIFEDEVFAG-----VTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGMKPGDPRILQKLDDDGLPFIGAKLQYGDP-YYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFFLLHDRLFNC-SDRSVAHVCVKCGSLL----SPLLEKPP---PSWSAMRNRKYNCTLCNR-------SDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 1136          
BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Match: sp|Q54BM1|RPA2_DICDI (DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium discoideum OX=44689 GN=polr1b PE=3 SV=1)

HSP 1 Score: 682.559 bits (1760), Expect = 0.000e+0
Identity = 406/1166 (34.82%), Postives = 645/1166 (55.32%), Query Frame = 3
Query:   15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPE----------------TITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDR----TGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFT---TNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNV-KIFMSKN-SNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFL-----KKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEI-ICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDE--SVIGCGNKVFDDLD----WDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTK-YKESQVGYVINISRNGSDYGAT--------ICIKLE--RNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQ---TSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            +++   + +IDSF+ F   GI  +LK  +P  FE  + +      +  + +  +  ++    +YP E R    TY       + L   N   E                T    +G +PIM++S  CHL+G+S E+LI+  EE+ E GGYFIV GN+ ++R LV T+ N PV     H+K  T+R    T +   IRCVR D ++    L + ++    L+    ++ F +P  +++KAL++ +  E++++  +   + + +        + S RE++     T    L+Y+GS+FR   + P   +N++ GR FI++++ +++ +Y +KY L+++M+ KL++ V  KC  ++ D+  FQE+L  G ++  + +  L  YL +    V K F  K  S   + + +K     + +I +   Y L+TG+L   +   ++Q +G  ++ D +NF RFI++FR+ HRGAFF  MK++ IR+L+PESWGF CPVHTPDG PCGLLNH S N +V   AA        +  L        ++ ++ +  +  + Q++ + L+G++LG I  +  +E    +RY +   + E  +P+T EI      ++   Q+ GI +FT   R +RPV N+  G+   E IG  EQ Y++I+      + G       TH E S  +++S  A  TP+ +YN SPRN+YQCQM+KQ+MG   +S  +R+DNKLY     Q P+  +K   +F     P G N ++A+ S T YDMEDAM+IN ++ ERG G  ++YK+  IDL     R ++  +  G  N V D+LD     DGLP +G  + PG+   Y  Y   ++  +VTK YK  +  Y+ ++       GAT        IC+KL   RN  IGDKFSSRHGQKGV S     +++P +E G+ PD + NP++ PSRMT+GM++E +AGK  A+  K  D+TAFQ    +  ++ +   L    ++ FG E+ Y G  G+  + EI  GV YYQRLRH+V+DKYQVR +GK++ +TRQP+KGRKVGGGIR GEMERD LL+HGA+FCL DR++  +SD   ++ C  C S +  Y +       + NQT +        CK C+       S++++  + +P V  + + EL  +N+ ++L V+
Sbjct:    4 ELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRPTRNIVEKEIKLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDLGRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVAL---HRKAWTNRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFLPATLLLKALKDTTEKEIYENIVQGDNENTFLTDRV----ELSLREQKINNINTQEEVLDYIGSRFRARTQFPPSFSNIKIGRWFINQFVFVHLPNYNDKYNLLILMIQKLYAMVGGKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDALKKVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQKAQTLLPSFLAAHGMLPIDMVSVY--QHQYLTITLDGRVLGKIEPKAGEEMVKMLRYLRSMGN-EPSIPKTMEISYAPPTNVENGQYSGISLFTTGARFMRPVVNLTSGQN--ELIGPQEQLYMEIAVVPHEVIKG-----VTTHIETSPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKTFFGRPNTVVDELDKFIDTDGLPFVGRLIKPGEP--YYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGKFQDATAFQFDENNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMK-SSDFAKIKVCKLCGSTLTIYSKK-----DYSNQTVS-------ECKSCK-------SSDSIATISIPYVFTYLVAELAAVNITMKLQVS 1130          
BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Match: sp|Q9P7X8|RPA2_SCHPO (Probable DNA-directed RNA polymerase I subunit RPA2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa2 PE=3 SV=2)

HSP 1 Score: 672.929 bits (1735), Expect = 0.000e+0
Identity = 413/1174 (35.18%), Postives = 633/1174 (53.92%), Query Frame = 3
Query:   18 IQDFTRDYIDSFNAFLKPGIRN-ILKHLKP-------TEFELGT---GERXXXXXXXXXXQKPKCSIDN----TRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPH-QKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDF-PKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSN----KPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAA--------QFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCG--------NKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATIC------IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCE---------NDIRYSYSNE------NMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
            +Q   + ++DSFNA    G+ N  +K +         T+ E G    G +I   ++ + I KP  S        R +YP E R    TY+ ++++  + ++N    ++    VG IPIM+RSN CHL GLS  ELI H EE +E+GGYFIV G + ++R L+  +RN P    +P     GT  + +   IRCVR D+++    L + +N     +    K  + IP  +I+KAL   S  E+F+    K   +  + + + +M   +  +     +    L+YLGSKFR  L +   LT++E GR  + + + +++++ ++K+ L+L M+ KL++ V  +CC ++ D+   QEIL  G L+ Q+ +  + ++L ++   + + + +++        K + +   K +  I   + Y LSTG+L   T   ++Q  G  ++ + +NFYRF+++FR  HRGAFF ++K++T+R+LLPE+WGF+CPVHTPDG+PCGLLNH +    +    +   Q  SL   L      ++       +S + CV L+GK++G+   + A+  A+ +R  K+    +L     TE     + +           Q+PG+Y+F+N  R++RPV +I  GE  ++ +G FEQ Y+DI+C     +      VS TH E S  +V S  A  TP+ ++N SPRN+YQCQM KQ+MG    + RYR+DNKLY     Q P+ R K ++ + +   P G N +VA+ SYT YDMEDAM++N ++ ERG G   +YK    DL+  R R +  V   G         +    LD DGLP IG +L  G   + A Y   T Q  +  Y  ++ G+V  +   G+D G + C      +++ R+  IGDKFSSRHGQKG+ S K  TVD+P +E G+ PD + NPH+ PSRMT+GM IE +AGK  A    + DST F  S+     + +   L    Y+  G E  Y G  G+ M ++I +GVVYYQRLRH+V DK+QVRT G I N+TRQPVKGRK  GGIR GEMERD ++ HG +F +QDR+++C SD      C +C S I                 +     +  RC+ C          +DI    S +      N   + +P+V  +   ELT MN+K+ L V
Sbjct:   25 LQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGALKFGNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPRQSEMREVGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNNGVTMFRFHWRKNEYLIPSMMILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAY--KSYGLYSQTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQKVVLVHLREAKDKFRLLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDFSDRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPSDVSQIPSLLLSLG-----VDPPSVVGHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYLFSNPARMVRPVKHISTGE--LDMLGPFEQVYMDIACFPKEIVP----KVS-THVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPFIGIKLEDGDP-IVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLAGKAGACHGLAQDSTPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTSFLMQDRLMNC-SDYAQSWVCRDCGSIISIMST---------ISMNGVGSASEVRCRSCAKPALGLEDTSDIWQDGSGKKFVGGTNTTLIALPSVFNYLTAELTAMNIKMMLEV 1173          
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: A0A3Q0KN97 (Putative dna-directed RNA polymerase I subunit OS=Schistosoma mansoni OX=6183 PE=3 SV=1)

HSP 1 Score: 842.032 bits (2174), Expect = 0.000e+0
Identity = 476/1164 (40.89%), Postives = 690/1164 (59.28%), Query Frame = 3
Query:   18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNI-YPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPV-VQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKA-KEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIV--KSSFKDSKRILNPMHYLLSTGSL-----GQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFL---KKSVMELN-QIKSFADKSQFICVMLNGKLLGYIYD-RFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIM-----FGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTP-----------DRGRL--DESVIG-CGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKES-QVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVS-EDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHS-----YYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIR--YSYSNENMLR-VRVPAVTRHFIHELTTMNVKVQLSVAPLD 3368
            ++  +R +  SF+ F+K G+  ++KHL+P EF   +G  +       I   P    DN   + YP ECRR  LTY G++ +++ +++N S    +    G +PIM+ S  C+L  L   +   H EE  E+GGYFIV G + +LR L+ +RRN+P+ +     +K G   T H   +RCVR+DET S + L W  N  P L   + ++ F +P+ +I++AL  K+  E+F D  +   E FS+ E    +  +   ++ ++++    L YLG  FR+ + +P  L++ EAG+  + EYIAI++  + +KY L+  M+ KLH+FV+  CC+ES D   FQE+L P +L+ QV R  +++ LANV   V +  S+  N  I   +  ++    +  +   M Y++STG+L       ++     Q+ GL +  DN+NF RF A FRA HRGAFF +M+++++RRLLPE+WGF CPVHTPDG PCGLLNH +               +++  +L   K   +EL+ Q+   A++   + V+L+G+L+G++     A+  A  +R  KV P+ +  +P T EI     +   +Q+PG+Y+F    RLLRPV N+       G+ VIE+IGTFEQ YL+IS +         S +  +H E++ E+++SF AG  PY ++N SPRN+YQCQM+KQ+MG++ Y+ R RSD K Y    PQ PL R+K Y ++++   PLG+N IVA+ SYT YDMEDAMVIN  S +RG+    IYK  VIDL+             + RL   E   G  G K    LD DG PP+GARL PG S +YA   S+T Q    KY+   Q+ YV +IS NGS   ATI ++L R  DIGDK+SSRHGQKG+NSL +Q  ++P S  +G++PD +FNPH  P+RMT+GMMIEF+AGK AAL+   ID+T FQ S+     E+Y   L    ++ +G E    G  GR ++++I +GVVYYQRLRH+V DKYQVR  G+ D I RQP+KGRKVGGGIRLGEMERD LLSHG  F LQDR++D N DKV +  CS C    HS          + Q+  +N +      N W C+LC++D     S   +N L+ V+V A  R+  +EL  +NVK +LS+  L+
Sbjct:    1 MEKLSRVHTGSFDFFVKEGLSRLVKHLQPLEFN--SGSDVVEFKIQFIEVAPPVDSDNRSTLLYPSECRRSGLTYGGELKLSVRVSVNGSPLGVLDVPCGVLPIMVMSRACNLSSLPRSQFYLHGEEFKEIGGYFIVHGKERVLRLLIMSRRNYPLAISRSTFKKRGHGYTEHAIVMRCVREDETVSILMLHWLVNGEPALAFIVEREQFLVPISIILRALVKKTEFEIFDDIRRGCGESFSLEENAMRILIRL--KDDEYSSQTRALCYLGGLFRKRMNVPDRLSDEEAGKFLLSEYIAIHLSSFLDKYHLLCFMIKKLHAFVSGLCCEESNDNPMFQEVLLPSTLYLQVLRAKVLHLLANVKEQV-LLKSRKQNVRISLSLFHQALLSRASEVSTAMVYMVSTGNLPPSCKSTLSAQLSGQSTGLSVPADNVNFLRFAAQFRAVHRGAFFTEMRTTSVRRLLPEAWGFFCPVHTPDGAPCGLLNHLAEPVEAVCETPKQSVLENIGNWLSTHKLRPIELSRQLFGVAEQQNALPVLLDGRLIGWLSTLDEAKRLALELRNSKVDPNCKN-IPHTMEITLVPSTDVGSQYPGLYLFAGGSRLLRPVKNLQCPKNSAGKDVIEWIGTFEQVYLNISVKEEELSE--RSPIDRSHIEIAPENIFSFVAGLIPYPDFNQSPRNMYQCQMAKQTMGHSCYTWRNRSDAKAYRLFTPQSPLVRTKMYVKYDVDHYPLGFNAIVAVMSYTGYDMEDAMVINKASYDRGLAGACIYKSEVIDLSSLSKSTSSNNPFQKKRLVTSEYYFGFAGEKPDKGLDLDGFPPVGARLEPGVSWLYAYTHSETLQTNFIKYEGGEQIAYVDSISLNGSWSCATITLRLPRQPDIGDKYSSRHGQKGINSLLIQCEEMPWSTTNGLIPDLIFNPHGFPTRMTMGMMIEFLAGKSAALTGNLIDATPFQWSEDSPPYEDYCQILTDCGFNHWGTETMMSGSTGRQLEAQIYVGVVYYQRLRHMVADKYQVRAEGRFDPILRQPIKGRKVGGGIRLGEMERDCLLSHGLVFSLQDRLVDSNCDKVKMLACSKCGGLTHSDLARNITNTSVNQITSNNSSSFVPGTNRWCCRLCDSDSSDCVSRDRDNSLKYVKVSASFRYLTYELACLNVKTRLSLIDLE 1156          
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: A0A5K3ENF3 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 838.565 bits (2165), Expect = 0.000e+0
Identity = 463/1155 (40.09%), Postives = 683/1155 (59.13%), Query Frame = 3
Query:   27 FTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPV-VQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFP-KAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIK--EIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVK----------QNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLK----KSVMELNQIKSFADKSQFICVMLNGKLLGYIYD-RFAQEFANHIRYKKVFPD-PELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPV------IEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTP-----DRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKES-QVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSED-GIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNS------WRCKLCENDI---RYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
              R +I SFN  LK G++ ++K+++P       G+   +  E++ I  P+     + +I+P ECRR   TY G + +T+ +  N      +  + G +PIMI SN C+L  +   E I+H+EE+ E+GGYFIV G + +LR L+  RRN+P+ +     +K G   T     +RCVRDDE +S I L W  N  P L   +  +   +P+ ++++AL +K+ LE+++D         S+ E    +  +   +E  +      L YLG  FR  + +P   T+  AG   + EY+ I+V  + +KY ++  MV KLH+FV+  CCQES D L FQE+L PG+++ QV R  L+ YL  V R      S+ S KP++   I  +  ++   ++N + + ++ G+L     PG            Q +GL +  D +NF RF A FRA HRGA F DM+++++RRLLPE+WGF+CPVHTPDG PCGLLNH + +T       S    + L  +L     + V    Q+ +  +      V+L+G+L+G+    + A++ A+ +R+ K+ P+ P+  VP T EI     + T +QFPG+Y+F    RLLRPV +++   P       IE IGTFEQ Y+DI+      M    ++    H E+S ES++SFTA  TPY ++N SPRN+YQCQM+KQ+MG++ Y+ R+R+D K+Y  L PQ PL R+K+Y+++N+   PLG+N +VA+ SYT YDMEDAMVIN +S ERG     IYK  VIDL        R +  E   G   ++  ++D DG PPIG RLIPGKS +Y     +T ++   +YK+  Q+ YV  IS NGS   A I ++L R  DIGDK+SSRHGQKG+NS+ +   D+P + D GIVPD +FNPH  P+RMT+GMMIEF+AGK AAL+ + +D+T FQ ++      EY   L +  ++ +G E    G  GRL+++ I +GVVYYQRLRH+V DKYQVR  G+ D + RQP+KGRKVGGG+RLGEMERD LLSHG +F LQDR++  N DKV +  CSNC   +H     + ++    + +   + G+S      WRC+LC       + S +N  +L + VPA  R+  +EL  +NV+ +++V
Sbjct:    4 LARMHIQSFNFMLKSGLKRMVKYMQPVYITTPQGDEYSLNFESVEISHPRAHDRKSVSIFPHECRRTGQTYGGNLAITVKVRRNGCDMGIVDVSNGELPIMILSNACNLSDIPRSEFIRHNEEEHELGGYFIVNGKERLLRLLIMARRNYPLAITRSSFKKRGPSYTEFSVIMRCVRDDEHSSLIMLHWVMNGEPILAFTVENEQLFVPISILLRALMDKTELEIYEDIRCGGGNSLSLEEHAMRILTRL--QEDDYNCQSRALCYLGKLFRLKMHLPGSYTDRAAGEHLMREYLIIHVDSFADKYHVLCYMVRKLHAFVSGACCQESNDNLMFQEVLLPGTMYIQVLRNRLITYLHTV-REQLYLHSRKSTKPLEIINIRHALARNISEVINGVSFFVANGNL-----PGSSRAIIGRLLNGQASGLSVPLDTVNFLRFAAQFRAVHRGAMFNDMRTTSVRRLLPEAWGFLCPVHTPDGAPCGLLNHLAESTEAVCVTPSHALVNKLAIWLLEHNLRPVELTRQLTAANEYRDVFPVLLDGRLVGWSPSVQSARQLADELRFAKLDPNCPQ--VPTTMEICLVPPTETGSQFPGLYLFVGGSRLLRPVKSLVRVGPENVDKAEIEMIGTFEQPYMDIAVTLDELMERPVAERR--HFEVSPESIFSFTASLTPYPDFNQSPRNMYQCQMAKQTMGHSTYTWRHRADPKIYRLLTPQSPLVRTKSYNKYNVDHYPLGFNAVVAVMSYTGYDMEDAMVINKSSYERGFADACIYKSEVIDLADYSIKGQRKKQTEHYFGGPAELPPNIDIDGFPPIGTRLIPGKSILYVYTHYETMEMTAVRYKDGEQIAYVEAISLNGSWSKACITLRLPRRPDIGDKYSSRHGQKGINSILVPADDMPWTVDSGIVPDLIFNPHGFPTRMTMGMMIEFLAGKSAALTGQRVDATPFQWTEEKPPFSEYADQLTNAGFNYWGTEAMMSGVTGRLLEAHIFIGVVYYQRLRHMVADKYQVRAEGRFDPVLRQPIKGRKVGGGVRLGEMERDCLLSHGLSFTLQDRLLGSNCDKVKMLVCSNCGGMVHEDL--ISDETITRSSSSIQQRGHSLARKVRWRCRLCSQTTSSGQVSAANNKLLLIDVPAAFRYLTYELACLNVQTRIAV 1144          
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: G4VEG3 (Putative dna-directed RNA polymerase I subunit OS=Schistosoma mansoni OX=6183 GN=Smp_140690 PE=3 SV=1)

HSP 1 Score: 830.091 bits (2143), Expect = 0.000e+0
Identity = 471/1170 (40.26%), Postives = 686/1170 (58.63%), Query Frame = 3
Query:   18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNI-YPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPV-VQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTR----------ERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIV--KSSFKDSKRILNPMHYLLSTGSL-----GQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFL---KKSVMELN-QIKSFADKSQFICVMLNGKLLGYIYD-RFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIM-----FGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTP-----------DRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKES-QVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVS-EDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHS-----YYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIR--YSYSNENMLR-VRVPAVTRHFIHELTTMNVKVQLSVAPLD 3368
            ++  +R +  SF+ F+K G+  ++KHL+P EF   +G  +       I   P    DN   + YP ECRR  LTY G++ +++ +++N S    +    G +PIM+ S  C+L  L   +   H EE  E+GGYFIV G + +LR L+ +RRN+P+ +     +K G   T H   +RCVR+DET S + L W  N  P L   + ++ F +P+ +I++     S+  +++ F   +        ++ +F KF  R          + ++++    L YLG  FR+ + +P  L++ EAG+  + EYIAI++  + +KY L+  M+ KLH+FV+  CC+ES D   FQE+L P +L+ QV R  +++ LANV   V +  S+  N  I   +  ++    +  +   M Y++STG+L       ++     Q+ GL +  DN+NF RF A FRA HRGAFF +M+++++RRLLPE+WGF CPVHTPDG PCGLLNH +               +++  +L   K   +EL+ Q+   A++   + V+L+G+L+G++     A+  A  +R  KV P+ +  +P T EI     +   +Q+PG+Y+F    RLLRPV N+       G+ VIE+IGTFEQ YL+IS +         S +  +H E++ E+++SF AG  PY ++N SPRN+YQCQM+KQ+MG++ Y+ R RSD K Y    PQ PL R+K Y ++++   PLG+N IVA+ SYT YDMEDAMVIN  S +RG+    IYK  VIDL+             + RL  S    G K    LD DG PP+GARL PG S +YA   S+T Q    KY+   Q+ YV +IS NGS   ATI ++L R  DIGDK+SSRHGQKG+NSL +Q  ++P S  +G++PD +FNPH  P+RMT+GMMIEF+AGK AAL+   ID+T FQ S+     E+Y   L    ++ +G E    G  GR ++++I +GVVYYQRLRH+V DKYQVR  G+ D I RQP+KGRKVGGGIRLGEMERD LLSHG  F LQDR++D N DKV +  CS C    HS          + Q+  +N +      N W C+LC++D     S   +N L+ V+V A  R+  +EL  +NVK +LS+  L+
Sbjct:    1 MEKLSRVHTGSFDFFVKEGLSRLVKHLQPLEFN--SGSDVVEFKIQFIEVAPPVDSDNRSTLLYPSECRRSGLTYGGELKLSVRVSVNGSPLGVLDVPCGVLPIMVMSRACNLSSLPRSQFYLHGEEFKEIGGYFIVHGKERVLRLLIMSRRNYPLAISRSTFKKRGHGYTEHAIVMRCVREDETVSILMLHWLVNGEPALAFIVEREQFLVPISIILRV----SFKSLYKTFGNVR-----TCNISFLFLKFHIRNAMRILIRLKDDEYSSQTRALCYLGGLFRKRMNVPDRLSDEEAGKFLLSEYIAIHLSSFLDKYHLLCFMIKKLHAFVSGLCCEESNDNPMFQEVLLPSTLYLQVLRAKVLHLLANVKEQV-LLKSRKQNVRISLSLFHQALLSRASEVSTAMVYMVSTGNLPPSCKSTLSAQLSGQSTGLSVPADNVNFLRFAAQFRAVHRGAFFTEMRTTSVRRLLPEAWGFFCPVHTPDGAPCGLLNHLAEPVEAVCETPKQSVLENIGNWLSTHKLRPIELSRQLFGVAEQQNALPVLLDGRLIGWLSTLDEAKRLALELRNSKVDPNCKN-IPHTMEITLVPSTDVGSQYPGLYLFAGGSRLLRPVKNLQCPKNSAGKDVIEWIGTFEQVYLNISVKEEELSE--RSPIDRSHIEIAPENIFSFVAGLIPYPDFNQSPRNMYQCQMAKQTMGHSCYTWRNRSDAKAYRLFTPQSPLVRTKMYVKYDVDHYPLGFNAIVAVMSYTGYDMEDAMVINKASYDRGLAGACIYKSEVIDLSSLSKSTSSNNPFQKKRLVTSEYYFGEKPDKGLDLDGFPPVGARLEPGVSWLYAYTHSETLQTNFIKYEGGEQIAYVDSISLNGSWSCATITLRLPRQPDIGDKYSSRHGQKGINSLLIQCEEMPWSTTNGLIPDLIFNPHGFPTRMTMGMMIEFLAGKSAALTGNLIDATPFQWSEDSPPYEDYCQILTDCGFNHWGTETMMSGSTGRQLEAQIYVGVVYYQRLRHMVADKYQVRAEGRFDPILRQPIKGRKVGGGIRLGEMERDCLLSHGLVFSLQDRLVDSNCDKVKMLACSKCGGLTHSDLARNITNTSVNQITSNNSSSFVPGTNRWCCRLCDSDSSDCVSRDRDNSLKYVKVSASFRYLTYELACLNVKTRLSLIDLE 1155          
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: A0A4S2L477 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_009880 PE=3 SV=1)

HSP 1 Score: 822.002 bits (2122), Expect = 0.000e+0
Identity = 453/1173 (38.62%), Postives = 686/1173 (58.48%), Query Frame = 3
Query:   18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPH-QKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAK-EDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIV--KSSFKDSKRILNPMHYLLSTGSL-----GQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLK----KSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRF-AQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFG-EP----VIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLT--------------PDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKES-QVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVS-EDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNS---------------WRCKLCE-NDIRYSY---SNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAPL 3365
            ++  +R ++ +F+  L+ G++ ++K+L P+EF    G+  ++ +E + I  P+      + +YP ECRR   TY   + + + L+IN +    +    G +PIM+ S  C+L  L+  E  KH EE+ E+GGYFIV G + +LR L+ TRRNFP+   +P  ++ G+  +     +RCVR+DE  S + L W  N  P L   + ++ F +P+ ++++A+ NK+  EMF D  +   E  S+ E    +  +   ++  +++    L Y+G  FR  +++P   T+ +AG   I  YI I++  + +KY L+  M+ KLH+FV+ +CC+E+ D L FQE+L P +L+ QV R  +   L N   ++ +  S+ S   I   +  +S    +  I + M YLL TG+L       +      Q +GL +  DN+NF R  A FRA HRGA F D++++++RRLLPE+WGF+CPVHTPDG PCGLLNH +              +D+L  +L     +SV    Q+    +    + V+L+G+L+G++     A++ A+ +R  K+    +  VP + EI     +   +Q+PG+++FT   RLLRPV N+  G +P    ++E+IGTFEQ YLDI+      +     DV  +H EL+ + ++SF AG TPYQ++N SPRN+YQCQM+KQ+MG++ Y+ R+RSD K Y  L PQ PL R+KTY ++++   PLG+N IVA+ SYT YDMEDAMVIN  S ERG+    IYK  V+DL+                +    E   G  N+    LDWDG PP+G RL PG S +Y     +T+   + KY+   Q+ YV  IS NGS   ATI ++L R  DIGDK+SSRHGQKG+NSL + + ++P S   G+VPD +FNPH  P+RMT+GMM+EF+AGK AAL+ K +D+T FQ ++      +Y   L    ++ +G E    G  GR +++ I +GVVYYQRLRH+V DKYQVR+ G+ D I RQP+KGRKVGGGIRLGEMERD LLS G +F LQDR++D N D V +  C  C S +H+    +   V  + +   +  G S               W C+LC+  ++  S+   +  ++ RVRV A  R+ ++EL+ MN++  L+++ L
Sbjct:    1 MEKLSRIHVRAFDFMLRDGLKRMVKYLVPSEFICPNGDVCELRVEFLEIGNPRHD-KAGKPVYPHECRRQGTTYGATLRLNVRLSINGTAASVLEIPCGEVPIMVLSRACNLSKLNRAEFPKHLEEEREIGGYFIVNGKERVLRLLIMTRRNFPLAISRPSFKRRGSGYSEFAIIMRCVREDEAVSTMMLHWLMNGEPVLAFIVEREQFFVPISILLRAMVNKTEFEMFDDIRRGSGESLSLEETAMRILVRL--KDEDYSSQTRALSYMGRLFRGRMRLPTNATDEDAGIFLIRRYIGIHLDSFVDKYHLLCFMIRKLHAFVSGQCCEETNDNLMFQEVLLPSTLYLQVLREKIRQLLDNTKDHI-LARSRKSKVKINSTLLQQSLLSRAPEIGSAMTYLLCTGNLPPTLRSDLAAQFGGQASGLSVPADNVNFLRLAAQFRAVHRGALFTDIRTTSVRRLLPEAWGFICPVHTPDGAPCGLLNHLAEPVEAVCETPKHSTNDALAAWLTSNKLRSVELSRQLSGVTEAQNALPVLLDGRLVGWLSSLIEAEQLADELRDLKLDTQSKH-VPYSLEIALVPPTDVGSQYPGLFLFTGGSRLLRPVKNVRHGNQPEVGGLVEWIGTFEQPYLDIAVTQ-EELQERPEDVQ-SHMELTPDGIFSFVAGLTPYQDFNQSPRNMYQCQMAKQTMGHSCYTWRHRSDVKAYRLLTPQSPLVRTKTYVKYDIDHYPLGFNAIVAVMSYTGYDMEDAMVINKGSYERGLAGACIYKSEVLDLSVLNKQAISKSQGFARRKTVAAEHYFGTPNQPPPGLDWDGFPPVGTRLEPGVSALYCYTHVETQHTTIVKYEGGEQIAYVDAISLNGSWSHATITLRLPRPPDIGDKYSSRHGQKGINSLLVPSDEMPWSVTSGVVPDLIFNPHGFPTRMTMGMMVEFLAGKSAALTGKRVDATPFQWTEDNPPFTDYCRQLADCGFNYWGTEMMMSGCNGRQLEAHIYIGVVYYQRLRHMVADKYQVRSQGRFDPILRQPIKGRKVGGGIRLGEMERDCLLSQGLSFTLQDRMVDSNCDTVTMLACKKCGSLVHT---DLARNVSSNEELSTSFFGVSAIGSAESSGPFNRHLWSCRLCDRTEVDSSFIGNTKAHLKRVRVSAAFRYLVYELSCMNIQTHLTLSDL 1163          
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: A0A564Y4U9 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS2916 PE=3 SV=1)

HSP 1 Score: 810.061 bits (2091), Expect = 0.000e+0
Identity = 463/1156 (40.05%), Postives = 675/1156 (58.39%), Query Frame = 3
Query:    3 MEKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPV-VQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKED-FSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIK--EIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVK----------QNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVM---ELNQ-IKSFADKSQFICVMLNGKLLGYIYDRFA-QEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIM------FGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTP-----DRGRLDESVIGCGNK-VFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVS-EDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAG---LRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQT--DNAKHGNSWRCKLC---ENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQL 3350
            +E  ++Q  +R ++DSFN  ++ G++ +L++L+P  F +G  E    V    I Q  + ++ +T  IYP ECRR   TY G + M++ +   +     +    GTIP+M+ S+LC+L  L   E  K +EE  E+GGYFIV GN+ +LR ++  RRN+P+ V     +K GT  T +   +RCVR+DET + + L W  N  P L   +  +   +P+ V+++AL +K+  E+++D  +   +  S+ E    + N+   +E  +++    L ++G  FR  + +   L++LE G+  + EY+ I+ K + +KY ++  M+ KLH+FV+  CC E+ D L FQE+L PG+ + Q+ R  ++ YL +    + I  S+ + KP++     ++  +    + + M   + TG+L     PG            Q+ GL +  D INF RF A FRA HRGA F DM+++++RRL PE++GF+CPV+TPDG+PCGLLNHF+ NT V     S    D L ++L+K  +   EL+Q +    +      V+L+G+L+G+     A +E A  +R  K+  +  L VP   EI     + TA+Q+P +Y+FT S RLLRPVY+ +         P IE IGTFEQ YLDI       +     D    H+E+S E ++SF A  TP+ ++N SPRNLYQCQM KQS+ ++ YS  YRSD K Y    PQ PL R+KTY ++++   P+G N IVA+ SYT YDMEDAMVIN  S +RG+    IYK  +IDL        R +  E   G   K +  D+D+DGLP IGA+LIPGKS  Y     +T+++    YK  Q GYV +IS +G  Y  TI +++ R  DIGDK+SSRHGQKG+NS+ +   DLP S + G++PD +FNPH  P+RMT+GM+IEF+AGK +AL+    D+T FQ +D V  Y+     L  Y +D  G E    G  G+ +++ I MGVVYYQRLRH+V DKYQVR  G+ D   RQP+KGRKVGGGIRLGEMERD L+S G +F L DR++  N DKV +  CS C   IH+      +Q   +  T        + WRC+LC   E     S  N+  L V VPAV RH  +EL  +NV+ +L
Sbjct:    8 IENEKMQRLSRAHVDSFNFMVRVGLKRMLEYLQPIYFHVGDEEYSLGVEHLEIGQPMEPNLKSTL-IYPHECRRNGETYAGTLKMSIRIRSKSVDFGVVDVAGGTIPVMVMSDLCNLSKLPRSEFYKVNEETRELGGYFIVNGNEKVLRMIIMARRNYPIAVSRSSFKKRGTGFTEYCVIMRCVREDETAAPVMLHWVTNGEPVLAFTVENEQVFVPVSVLLRALVDKTEFEIYEDIIRGGGNSLSLEEHAIKILNR--CKEEDYSSQARALSHIGRLFRLKMYLSKCLSDLEVGKHLLTEYVLIHTKSFFDKYHILCYMIRKLHTFVSGGCCVENNDNLMFQEVLLPGTQYVQLLRNRIITYLHSAREQISI-ASRRTTKPLEYANFRQALNRTYAEVTSNMTSFIMTGNL-----PGTSKAVLGRLLNGQSTGLSVTVDTINFLRFAAQFRAVHRGAMFTDMRTTSVRRLQPEAFGFICPVNTPDGSPCGLLNHFAKNTEVVTETPSDSMIDDLAQWLRKHYVRPVELSQQLMGHEEHCGIFPVLLDGRLVGWAPSGLAAKELACTLRIAKLDKNCSL-VPSNLEICLVAPTDTASQYPSLYLFTGSSRLLRPVYSYVRTGGCKLDNPEIEMIGTFEQPYLDIPVTQKELLQRSPEDR--LHREISPEDIFSFIASLTPFCDFNQSPRNLYQCQMGKQSIAFSNYSYMYRSDPKFYRLFIPQSPLVRTKTYVDYDVDHYPVGINAIVAVLSYTGYDMEDAMVINKASYDRGIADACIYKTEIIDLRQYSTKNSRAKDAEHYFGGNEKDLPSDIDFDGLPRIGAKLIPGKSTFYVYTHRETKKMTTVVYK-GQFGYVDSISNHGVSYKVTITLRIPRRPDIGDKYSSRHGQKGINSILMSPSDLPFSTKTGMIPDLIFNPHGFPTRMTMGMLIEFLAGKSSALTGIFTDATPFQWNDEVPPYLDYGRILEQYGFDYHGTETMVSGITGQPLEAHIFMGVVYYQRLRHMVADKYQVRAEGRYDPELRQPIKGRKVGGGIRLGEMERDCLISQGLSFTLHDRLVGSNCDKVKMFVCSKCSGMIHADLVGESQQNAPNTTTLHQGLWSASRWRCRLCNQAEGSTPSSTRNKLSL-VEVPAVFRHLTYELACLNVQTKL 1149          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
Match: polr1b (RNA polymerase I subunit B [Source:NCBI gene;Acc:103036003])

HSP 1 Score: 767.303 bits (1980), Expect = 0.000e+0
Identity = 443/1143 (38.76%), Postives = 653/1143 (57.13%), Query Frame = 3
Query:    6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFS-----IVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKP---IKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGC---GNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGAT----ICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
            ++  +QD  + +IDSF+  L  G+  +++ + P EF +  G+RI +      +  P   K  I     ++P ECR    TY GK++  ++ ++N      I +++G +PIM++S LC+LHGLS +ELI+HHEE +E+GGYFIV G + ++R L+  RRNFP+   +P  K  G   T +   + CV+D+ T   + L + DN    L     K+ F +PL   +KAL + S  +++Q+  K KE+ S     + E+L ++       E   TT    L YLG +FR  L +P W TN +  +  +DE + I++K   EK+  + +M  KL +F   +C +E+ D+L  QE+LTPG LF    +  +  +L +V    K+ + K S +      E +   F     I     Y+L+TG++   T  G+ Q++GL ++ D +NF R++++FR  HRGA F  M+++T+R+LLPESWGF+CPVHTPDGTPCGL+NH + +  + A  +S+    +L        + +  ++S   +    C  V+L+G ++G++    A      +R  KV  +  +  P  TEI+    +  A+ +PG+++FT   R++RPV N+  G+   E IGTFEQ YL++         G       THQEL   S+ S  A F P+ ++N SPRN+YQCQM KQ+MG+  +S + RSDNKLY    PQ PL R   YD +N+   P+G N +VA+ SYT YDMEDAM++N +S ERG    ++YK  VIDL+      D  V G      KV   LD DGLP IG  L  G    Y+  +  T Q  V+ YK  +   V NI    +D G      +CI  ++ RN  IGDKF+SRHGQKG+ S      D+P +E G+ PD LFNPH  PSRMT+GM+IE +AGK AAL     D+T F  S+    +E +   L++  Y+ +G ER Y G  G  ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QPV GR V GGIR GEMERD LL+HG++F L DR+ +C SD+ + + C +C S +     P+LE+ P H  T   +H N+  C LC+     S S EN   V VP V R+F+ EL  MN+K++L V
Sbjct:   31 QQAAVQDLVKAHIDSFDQALSDGLAQVVQAIPPMEF-MHKGDRISLAFVEATVHNPTVAKGGICKDLRVFPAECRGRRCTYRGKLVADVSWSVNGVPKGIIKQSLGQVPIMVKSKLCNLHGLSPKELIEHHEEAEEMGGYFIVNGIEKVIRMLIMPRRNFPIALSRPKFKSRGQGYTQYGIAVHCVKDEHTAINMNLHYLDNGTIMLNFIYHKELFFLPLGFALKALVDFSDYQIYQELIKGKEENSFYKSCVSEMLRLVM------EEGCTTRAKVLNYLGERFRVKLHLPEWYTNEQCAKFLLDECLCIHLKSDSEKFYNLCLMTRKLFAFAKQECQEENPDSLMCQEVLTPGQLFLMFLKEKMTGWLVSV----KLALDKRSQRVAGITAENLTRIFNLGTDITRAFEYMLATGNIISKTGLGMLQDSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTTVRKLLPESWGFLCPVHTPDGTPCGLMNHMTTHCEIVAPTSSTSTLPAL-----LCSLGVTPVESTPSQPYSCCYPVVLDGAMIGWVEKDLAPSLVESLRRFKVLKEKRM--PPWTEIVLVPQTGKASLYPGLFLFTTPCRMMRPVRNLALGKQ--ELIGTFEQLYLNVGIFEDEIEEG-----VTTHQELFPHSMLSVVASFIPFSDHNQSPRNMYQCQMGKQTMGFPLHSYQDRSDNKLYRLQTPQSPLVRPVMYDHYNIDNYPIGTNAVVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEVIDLSEKAKGEDSVVFGTKPGDPKVGTKLDVDGLPAIGTVLNYGDP-YYSYVNLNTGQSHVSFYKSQETCVVDNIKVCSNDTGTGRFKRVCITMRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALEHFGDMLKAAGYNYYGTERLYSGLSGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNVQGGIRFGEMERDALLAHGSSFLLHDRLFNC-SDRSVAQVCMDCGSLL----SPLLEKPPPHWST--TRHRNTI-CMLCKK----SDSIEN---VSVPYVFRYFVAELAAMNIKIKLDV 1132          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
Match: polr3b (RNA polymerase III subunit B [Source:NCBI gene;Acc:103044942])

HSP 1 Score: 363.614 bits (932), Expect = 3.030e-107
Identity = 328/1182 (27.75%), Postives = 531/1182 (44.92%), Query Frame = 3
Query:   15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLT------INNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIW----LTNLEAGRRFIDEYIAINVK----DYREKYELILVMVLK-LHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQI--KSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISI-TAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIE--YIGTFEQ--------------TYLDISCQGGNTMSGGDSDVS--VTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDD-----------LDWDGLPPIGARL----------IPGKSNMYAQYSSQTEQ-----VKVTKYKESQVGYV--INISRNGSD-YGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            Q++   + +IDSFN F+   I+ I+K  +    +      +K +   + +   + S + TR + P ECR  ++TY   + + +  T      I N+ P      +G +PIM+RS+ C L G +  E  K +E   + GGYFIVKG + ++    Q  +N  +V+      VG   T    + +  R +    + + + + NT  +            P+ +I KA+  +S  E+ Q      E+  +      +      ++ Q  T    L+Y+G+K R   +  +W     T +E  R  +   I  +V     ++R K   + VMV + + +  N+K   +  D    + +   G L   +F      + + + +     + K       ++VK   +D  +I N M   +STG+         +Q      +T  ++   FI+      R    F    K S  R L P  WG +CP  TP+G  CGL+ + ++ T +            ++      V ++N +  +  +  + F+ V LNG +LG I  R  Q+  +  R           + R    I + +SI T      +YI ++ GRL RP   +  G+P ++  +I    Q               YLD++ +   +++  +  ++   TH E+   ++    AG  PY ++N SPRN YQC M KQ+MG   Y+ R R D  +Y    PQ P+ ++KT +  + +K P G N  VA+ SY+ YD+EDA+V+N  SL+RG GRC +YK+    L     +  + V+G    + D            LD DG+   G R+          +P  +    + S+Q  Q     V +T YK S   Y+  + IS N  D +   I ++  R  +IGDKFSSRHGQKGV  L +   D+P  + GI PD + NPH  PSRMTVG +IE +AGK   L  +    TAF  S  V++    L  Y Y+  G +    G  G  +++ I  G VYYQ+L+H+V DK   R  G    +TRQP +GR   GG+RLGEMERD L+ +GA+  L +R++  +SD   V  C  C                          G S  C  C++    S        +R+P   +    EL +MN+  +L ++
Sbjct:   41 QVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALP------IGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVEQDRKGAVGASVTS-STHEKKSRTNMIVKQGRFYLKHNTLSE----------DAPIAIIFKAMGVESDQEIVQMI--GTEEHVMAAFAPSLEE---CQKAQIFTQTQALKYIGNKVR---RQRMWGGPKKTKMEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVILAQGNNKV--DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQF-DVVKHMRQD--QITNGMVNAISTGNWSLKRFKMDRQG-----VTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPI---IKLAFNLGVEDVNLLCGEELSYPTVFL-VFLNGNILGVI--RNHQKLVSTFR-----------LMRRAGFINEFVSISTNVTDRCVYISSDGGRLCRPYIIVKNGQPAVKNKHIEELSQGYRNFEDFLHESLVEYLDVNEENDCSIALYEHMITKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMG---PMLDAETRKPIWRHSILDADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQPGQPQYRDVPIT-YKGSTDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK-VKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM-ISSDAFEVDVCGQCGLL-----------------------GYSGWCHYCKSSCHVS-------SLRIPYACKLLFQELQSMNIIPRLKLS 1134          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
Match: polr3b (RNA polymerase III subunit B [Source:NCBI gene;Acc:103044942])

HSP 1 Score: 362.459 bits (929), Expect = 8.330e-107
Identity = 327/1182 (27.66%), Postives = 531/1182 (44.92%), Query Frame = 3
Query:   15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLT------INNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIW----LTNLEAGRRFIDEYIAINVK----DYREKYELILVMVLK-LHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQI--KSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISI-TAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIE--YIGTFEQ--------------TYLDISCQGGNTMSGGDSDVS--VTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDD-----------LDWDGLPPIGARL----------IPGKSNMYAQYSSQTEQ-----VKVTKYKESQVGYV--INISRNGSD-YGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            +++   + +IDSFN F+   I+ I+K  +    +      +K +   + +   + S + TR + P ECR  ++TY   + + +  T      I N+ P      +G +PIM+RS+ C L G +  E  K +E   + GGYFIVKG + ++    Q  +N  +V+      VG   T    + +  R +    + + + + NT  +            P+ +I KA+  +S  E+ Q      E+  +      +      ++ Q  T    L+Y+G+K R   +  +W     T +E  R  +   I  +V     ++R K   + VMV + + +  N+K   +  D    + +   G L   +F      + + + +     + K       ++VK   +D  +I N M   +STG+         +Q      +T  ++   FI+      R    F    K S  R L P  WG +CP  TP+G  CGL+ + ++ T +            ++      V ++N +  +  +  + F+ V LNG +LG I  R  Q+  +  R           + R    I + +SI T      +YI ++ GRL RP   +  G+P ++  +I    Q               YLD++ +   +++  +  ++   TH E+   ++    AG  PY ++N SPRN YQC M KQ+MG   Y+ R R D  +Y    PQ P+ ++KT +  + +K P G N  VA+ SY+ YD+EDA+V+N  SL+RG GRC +YK+    L     +  + V+G    + D            LD DG+   G R+          +P  +    + S+Q  Q     V +T YK S   Y+  + IS N  D +   I ++  R  +IGDKFSSRHGQKGV  L +   D+P  + GI PD + NPH  PSRMTVG +IE +AGK   L  +    TAF  S  V++    L  Y Y+  G +    G  G  +++ I  G VYYQ+L+H+V DK   R  G    +TRQP +GR   GG+RLGEMERD L+ +GA+  L +R++  +SD   V  C  C                          G S  C  C++    S        +R+P   +    EL +MN+  +L ++
Sbjct:   35 KVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALP------IGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVEQDRKGAVGASVTS-STHEKKSRTNMIVKQGRFYLKHNTLSE----------DAPIAIIFKAMGVESDQEIVQMI--GTEEHVMAAFAPSLEE---CQKAQIFTQTQALKYIGNKVR---RQRMWGGPKKTKMEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVILAQGNNKV--DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQF-DVVKHMRQD--QITNGMVNAISTGNWSLKRFKMDRQG-----VTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPI---IKLAFNLGVEDVNLLCGEELSYPTVFL-VFLNGNILGVI--RNHQKLVSTFR-----------LMRRAGFINEFVSISTNVTDRCVYISSDGGRLCRPYIIVKNGQPAVKNKHIEELSQGYRNFEDFLHESLVEYLDVNEENDCSIALYEHMITKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMG---PMLDAETRKPIWRHSILDADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQPGQPQYRDVPIT-YKGSTDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK-VKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM-ISSDAFEVDVCGQCGLL-----------------------GYSGWCHYCKSSCHVS-------SLRIPYACKLLFQELQSMNIIPRLKLS 1128          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
Match: POLR2B (RNA polymerase II subunit B [Source:HGNC Symbol;Acc:HGNC:9188])

HSP 1 Score: 294.664 bits (753), Expect = 2.867e-83
Identity = 221/793 (27.87%), Postives = 371/793 (46.78%), Query Frame = 3
Query: 1143 IKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSV-THQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYV------------IDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARL-----IPGKSNMYAQYSSQ--------TEQVKVTKYKESQVGYVINISRNGSDYGATIC---IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQL 3350
            +KEI       ++ I + + Y L+TG+ G +     +   G+  + + + F   +++ R  +      D K +  R+L    WG VCP  TP+G   GL+ + ++   +   +  S   + LE +  +++ E++   + AD ++   + +NG  +G   D   ++  N +R  +          R  +II   +S I   +   I I+T++GR+ RP+                           +  +    V+EYI T E+  + ++    +    G +  S  TH E+    +    A   P+ ++N SPRN YQ  M KQ+MG    +   R D   +    PQ PL  +++ +    ++ P G N IVAIASYT Y+ ED++++N ++++RG  R   Y+ Y             I   P R    E   G  + ++D LD DGL   G R+     I GK+    +   +        T++   T  + S+ G V  +    +  G   C   ++  R   IGDKF+SRHGQKG   ++ +  D+P + +GI PD + NPH+IPSRMTVG +IE + GK++A   +  D+T F  +  V++    L  Y Y   G E  Y+G+ GR + S+I +G  YYQRL+H+V+DK   R  G +  + RQP++GR   GG+R GEMERD  ++HGA   L++R+ +  SD   V  C+ C     +  R                  +++ C+ C N  + S        VR+P   +    EL +M++  ++
Sbjct:  305 LKEIRIYLAIKTRIISDGLKYSLATGNWGDVK-KAHQARAGVSQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISP-AAIADATK---IFVNGCWVGIHKD--PEQLMNTLRKLR----------RQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPKR----EECQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEA-SDPYQVHVCNLCGLMAIANTRT-----------------HTYECRGCRNKTQISL-------VRLPYACKLLFQELMSMSIAPRM 1050          

HSP 2 Score: 52.7582 bits (125), Expect = 2.473e-6
Identity = 31/87 (35.63%), Postives = 47/87 (54.02%), Query Frame = 3
Query:  201 IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET-----VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVML 446
            + P E R  NLTY   + + +T TI     E +        +G IPIM+RS  C L GL+  +L + +E   + GGYFI+ G++ +L
Sbjct:    1 MMPNEARLRNLTYSAPLYVDITKTIIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVL 87          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001310.1 (pep scaffold:Pmarinus_7.0:GL477974:3852:23589:-1 gene:ENSPMAG00000001164.1 transcript:ENSPMAT00000001310.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 300.056 bits (767), Expect = 3.713e-87
Identity = 224/825 (27.15%), Postives = 384/825 (46.55%), Query Frame = 3
Query: 1041 GSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSV-THQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDE--------SVIGCGNKVFDDLDWDGLPPIGARL-----IPGKS--------NMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATIC---IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
            G L   +FR    N L  V    + F+ +  +  ++  +K+       + + + Y L+TG+ G       +   G+  + + + F   +++ R  +      D K +  R+L    WG VCP  TP+G   GL+ + ++   +   +  S   + LE +  +++ E++   + AD ++   + +NG  +G   D   ++  N +R  +          R  +II   +S +   +   I I+T++GR+ RP+                           +  +    V+EYI T E+  + ++    +    G +  S  TH E+    +    A   P+ ++N SPRN YQ  M KQ+MG    +   R D   +    PQ PL  +++ +    ++ P G N IVAIASYT Y+ ED++++N ++++RG  R   Y+ Y    +     ++E        +  G  + +++ LD DGL   G R+     I GK+         +  Q    T++   T  + S+ G V  +    +  G   C   ++  R   IGDKF+SRHGQKG   ++ +  D+P + +G+ PD + NPH+IPSRMTVG +IE + GK++A   +  D+T F  +  V++    L  Y Y   G E  Y+G+ GR M S+I MG  YYQRL+H+V+DK   R  G +  + RQP++GR   GG+R GEMERD  ++HGA   L++R+ +  SD   V  C+ C     +  R                  +++ C+ C N  + S        VRVP   +    EL +M++  ++ +
Sbjct:   98 GPLLAFLFRGMFKNLLKEVRMYAQKFIDRGKDFNLELAIKTRI-----VTDGLKYSLATGNWGD-QKKAHQARAGVSQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISP-AAIADATK---IFVNGCWVGIHKD--PEQLMNTLRKLR----------RQMDIIVSEVSMVRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKDREYNNYTWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDMEEVFERPTRDTCQGMRHAIYEKLDDDGLISPGIRVSGDDVIIGKTVTLPDNEDELEGQTKRFTKRDCSTFLRTSETGIVDQVMVTINQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLSPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDTVNVQKISNLLHEYGYHLRGNEVLYNGFTGRKMTSQIFMGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEV-SDPYQVHVCNLCGLMAIANTRT-----------------HTYECRGCRNKTQISL-------VRVPYACKLLFQELMSMSIAPRMMI 874          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009064.1 (pep scaffold:Pmarinus_7.0:GL481227:16752:24008:-1 gene:ENSPMAG00000008197.1 transcript:ENSPMAT00000009064.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 268.47 bits (685), Expect = 1.165e-79
Identity = 175/516 (33.91%), Postives = 254/516 (49.22%), Query Frame = 3
Query: 1908 SVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDD-----------LDWDGLPPIGARL----------IPGKSNMYAQYSSQTEQVKVT----KYKESQVGYV--INISRNGSD-YGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAPLDD 3371
            + TH E+   ++    AG  PY ++N SPRN YQC M KQ+MG   Y+ R R D  +Y    PQ P+ +++T +     K P G N  +A+ SY+ YD+EDA+V+N  SL+RG GRC +YK+    L     +  + V+G    + D            LD DG+   G R+          +P  +    Q +S   QV+       YK S   YV  + IS N  D +   + ++  R  +IGDKFSSRHGQKGV  L     D+P  + GI PD + NPH  PSRMTVG ++E +AGK   L  +    TAF  S  V +    L  + Y+  G +    G  G  +++ I +G VYYQ+L+H+V DK   R  G    +TRQP +GR   GG+RLGEMERD L+ +GA+  L +R++  +SD   V  C  C    +S                       W C  C        S+  +  +R+P   +    EL +MN+  +L +A  ++
Sbjct:    2 NTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVQTRTIELIQFDKLPAGQNATLAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDRVMG---PMLDAATRKPIWRHKVLDSDGICSPGERVENKQVLVNKSMPSMTQTPIQGASAPTQVQYKDVPITYKGSTDSYVEKVMISSNNEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIASQEDVPFCDSGICPDIIMNPHGFPSRMTVGKLMELLAGKAGVLDGRFHYGTAFGGSR-VRDVCEDLIRHGYNYQGKDFVTSGITGEPLEAYIYIGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM-ISSDSFQVDVCGTCGLMAYS----------------------GWWCHYCR-------SSRQVSSLRIPYACKLLFQELQSMNIIPRLKLAKYNE 483          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008572.1 (pep scaffold:Pmarinus_7.0:GL476831:175452:211422:1 gene:ENSPMAG00000007718.1 transcript:ENSPMAT00000008572.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 251.906 bits (642), Expect = 4.600e-69
Identity = 190/669 (28.40%), Postives = 314/669 (46.94%), Query Frame = 3
Query: 1185 ILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFH----RGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVP------RTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDS-DVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVI----------GCGNKVFDDLDWDGLPPIGARL-----IPGKSNMYAQYSSQTEQVKV--------TKYKESQVGYV--INISRNGSDYGAT-ICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGR 2996
            I + + Y L+TG+ G       +   G+  + + + +   +++ R  +    RG+     K +  R+L    WG +CP  TP+G   GL+ + ++   +   +  S   + LE +  +++ E++   + AD ++   + +NG  +G                  +  DPE L+       R  +II   +S +   +   I I T++GR+ RP+                           +  +    V+EYI T E+    I+    +    G +   + TH E+    +    A   P+ ++N SPRN YQ  M KQ+MG    +   R D   +    PQ PL  +++ +    ++ P G N IVAIASYT Y+ ED++++N +++ERG  R   Y+ Y  D    R    E V           G  + ++D LD DGL   G R+     I GK+        + + V          T  + S+ G V  + ++ N   Y  T I ++  R   IGDKF+SRHGQKG   ++ +  D+P + +G+ PD + NPH+IPSRMT+G MIE I GK++A   +  D+T F  +  V++    L+ Y Y   G E  Y+G+ GR + S+I +G  YYQRL+H+V+DK   R  G +  + RQP++GR
Sbjct:  443 ITDGLKYSLATGNWGD-QKKAHQARAGVSQVLNRLTYASTLSHLRRLNSPCDRGS-----KLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISP-SAIADATK---IFVNGCWVG------------------IHKDPEQLMTTLRKLRRQMDIIVSEVSMVRDIREREIRIHTDAGRICRPLLIVEKQRLLLKRRHIEQLKEREYNGYSWQELVASGVVEYIDTLEEESAMIAMSPDDLQERGVAYCCTYTHCEVHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSIIMNRSAVERGYFRSVFYRSYT-DQESKRSYDQEEVFEKPTRETCQEGMRHAIYDKLDDDGLVSPGVRVSGDDVIIGKTASLPVTDDELDSVATRFVKRDTSTFLRSSETGIVDQVMVTLNQDGYKFTKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLSPDIIINPHAIPSRMTIGHMIECIQGKVSANKGEIGDATPFNDTVNVQKVSNLLQEYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGR 1082          

HSP 2 Score: 51.6026 bits (122), Expect = 1.252e-6
Identity = 44/161 (27.33%), Postives = 77/161 (47.83%), Query Frame = 3
Query:   27 FTRDYIDSFNAFLKPGIRNILKHLKPTEFE---------LGTGERXXXXXXXXXXQKP-KCSIDNT-RNIYPWECRRMNLTYEGKVIMTMTLTINNSTP---------ETITET-VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVML 446
              R  +DSF+ F++  ++ I++   P E +         + T  R  +  E I + KP     D     + P E R  NLTY   + + +T ++  +           +T  +T +G IPIM+RS  C L GL+  +L + +E   + GGYF++ G++ +L
Sbjct:   36 LVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHASGQIETPPRYSVRFEQIYLSKPTHWERDGAPAPMMPNEARLRNLTYSAPLYVDITKSVTTAGGGEEQQQQRLQTHEKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFVINGSEKVL 196          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002293.1 (pep scaffold:Pmarinus_7.0:GL487410:805:8051:1 gene:ENSPMAG00000002089.1 transcript:ENSPMAT00000002293.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 60.4622 bits (145), Expect = 3.230e-10
Identity = 54/232 (23.28%), Postives = 98/232 (42.24%), Query Frame = 3
Query:   15 QIQDFTRDYIDSFNAFLKPGIRNILK-------------HLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKA 671
            +++   + +IDSFN F+   I+ I+              +LK     +GT +  +             S + TR + P ECR  ++TY   + + +  T  N         +G +PIM+RS+ C L G +  E+ K +E   + GGYF+V+G + +     Q  +N  +V       VG   T    + +  R +    + + + + NT  +           IP+ +I+K 
Sbjct:   35 KVKGLVKQHIDSFNYFINVEIKKIMMANEKITSDADPMWYLKYLNIYVGTPDVEE-------------SFNVTRPVAPHECRLRDMTYSAPITVDIEYTRGNQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEMAKLNECPLDPGGYFVVRGVEKVCLIQEQLSKNRIIVDIDRKGNVGASVTS-STHEKKSRTNLVMKQGRFYMKHNTLAE----------DIPVAIILKV 242          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Yeast
Match: RPA135 (RNA polymerase I second largest subunit A135 [Source:SGD;Acc:S000006214])

HSP 1 Score: 629.017 bits (1621), Expect = 0.000e+0
Identity = 371/1010 (36.73%), Postives = 568/1010 (56.24%), Query Frame = 3
Query:  195 RNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET--VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPH-QKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDF--PKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINV-KD-YREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKE---IVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV--IGCGN-----KVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGA-----TICIK--LERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTA--FQTSDIVEEYMA-GLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFI 3143
            R +YP E R+   +Y GK+++ +  ++NN   E + E    G +P+M++SN CHL+ +S  EL++H EE DE+GGYFIV G + ++R L+  RRN P+   +P     G   + +   IR VR D+T+    L + ++     +    K  + +P+ +I+KAL + S  E+F        K+ F + + L ++   F  R          L+YLG KFR   +     ++LE G+  +D  + +++ KD  ++K+ ++L M+ KL+S V  +C  ++ D    QE+L  G L+  + +  +  YL N+   V++ +++      K+   + +   + ++ I + M Y LSTG+L   +   ++Q +G  ++ + INFYRFI++FR  HRG+FF  +K++T+R+LLPESWGF+CPVHTPDG+PCGLLNHF+    +    +   +  S+   L  +        +FA      CV ++GK++G++     +  A+ +RY KV      L P   EI     S T  Q+PG+Y+F    R+LRPV  +   +  I  +G FEQ Y++I+     T     ++V  TH E +  ++ S  A  TP+ ++N SPRN+YQCQM KQ+MG    +  +RSDNKLY     Q P+ ++  YD++ M   P G+N +VA+ SYT YDM+DAM+IN ++ ERG G   +YK   +DL  +R R D      G GN     +  + LD DGLP IG  +  G   + A +     + K+  Y  S+  Y+  ++  G +        T+ IK  + R   IGDKFSSRHGQKGV S K  T+D+P SE GI PD + NPH+ PSRMT+GM +E +AGK  AL   + DST   F   D   +Y    L    Y+  G E  Y G  G  + ++I +GVVYYQRLRH+V DK+QVR+ G ++++T QPVKGRK  GGIR+GEMERD L+ HG +F LQDR+++ +SD      C  C S +
Sbjct:  119 RKVYPSESRQRLTSYRGKLLLKLKWSVNNGE-ENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGIIGNDVKDSF-LTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRISTQQSDVSRIPSILYSLGVAPAS----HTFAAGPSLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGL-PIDLEIGYVPPS-TRGQYPGLYLFGGHSRMLRPVRYLPLDKEDI--VGPFEQVYMNIAV----TPQEIQNNVH-THVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDP-ICAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLN-SSDYTQASVCRECGSIL 1111          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Yeast
Match: RET1 (Second-largest subunit of RNA polymerase III; RNA polymerase III is responsible for the transcription of tRNA and 5S RNA genes, and other low molecular weight RNAs [Source:SGD;Acc:S000005733])

HSP 1 Score: 352.058 bits (902), Expect = 8.055e-104
Identity = 312/1196 (26.09%), Postives = 531/1196 (44.40%), Query Frame = 3
Query:   15 QIQDFTRDYIDSFNAFLKPGIRNILK-------------HLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIY--PWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREF--LKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKD----SKRILNPMHYLLSTGSLG----QITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKK-----SVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISI-TAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYI------------------GTFEQTYLDISCQGGNTMSGGDSDV--SVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRC-------AIYKHYVIDLTPDRG--RLDESVIGCGNKVF--DDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKV---------TKYKESQVGY-----------VINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQL 3350
            +++   + ++DSFN F+   ++ I+K             +LK  +  +G                 K S  +T++    P ECR  ++TY   + + +  T   +        +G +PIM+RSN C L+     ++ K +E   + GGYFIV G + ++    Q  +N  +V+    + +         + R  +    T   K++ + N+  +          +IP+ +++KA    S LE+ Q       D S  ++  +   + S  +    T    LEY+G+K +     K+ I    +EA    +  ++ +   D+REK   I +M  ++   + +    +  D +  + +   G L   +F     +     + + K+ + K   KP + +   +       S  I + ++  +STG+      ++   GV         T  ++   +I+      R    F    K S  R L P  +G +C   TP+G  CGL+ + ++ T +             E  +KK      V ++  I S +    +  V LNG L+G I  RF  +F    R+            R T  + + ISI + +    ++I T+ GR+ RP+  +  G+  ++ I                  G  E  YLD++ +  + ++  + D+  S+TH E+   ++    AG  PY ++N SPRN YQC M KQ++G   Y+   R D  LY    PQ P+ ++KT +  +  K P G N  VA+ SY+ YD+EDA+V+N +S++RG GRC        + K Y        G  R+DE+    G+ ++    L  DGL  +G ++  G+  +Y   S  T              T+Y+E+ V Y           ++++S N       + ++  R  ++GDKFSSRHGQKGV  + ++  D+P ++ GIVPD + NPH  PSRMTVG MIE I+GK   L+      T F  S + E+    L    ++  G +  Y G  G  + + I  G +YYQ+L+H+V DK   R  G    +TRQP +GR   GG+RLGEMERD ++++GA+  L +R++  +SD   V  C  C                          G S  C  C+       S EN++++ +P   +    EL +MN+  +L
Sbjct:   53 KVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVG-----------------KKSSSSTKDYLTPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAE----------EIPIAIVLKACGILSDLEIMQLV--CGNDSSYQDIFAVNLEESSKLD--IYTQQQALEYIGAKVKTMRRQKLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFE----DLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFKMERAGV---------THVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDE--------EEPIKKLCYVLGVEDITLIDSASLHLNY-GVYLNGTLIGSI--RFPTKFVTQFRHL-----------RRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVE--YLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDEN----GDPIWQHQSLGPDGLGEVGMKVQSGQ--IYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQAL-IKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSKL-EDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLM-ISSDAFEVDVCDKCGLM-----------------------GYSGWCTTCK-------SAENIIKMTIPYAAKLLFQELLSMNIAPRL 1141          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Yeast
Match: RPB2 (RNA polymerase II second largest subunit B150; part of central core; similar to bacterial beta subunit [Source:SGD;Acc:S000005677])

HSP 1 Score: 298.901 bits (764), Expect = 6.103e-85
Identity = 293/1190 (24.62%), Postives = 500/1190 (42.02%), Query Frame = 3
Query:  192 TRNIYPWECRRMNLTYEGKVIMTMTLTINNSTP--------ETITET-----------VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDET----TSEIKLFWRDNTCPDLQLQIGKKYFQ--IPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLT-MMFNKFSTRERQFTTNVSCLEYLGSKF-------------------REFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFI--DMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNI-------------------------------------------MFGEPVIEYIGTFEQTYLDISCQ-------GGNTMSGGDSD-----------VSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYV-------IDLT-----PDRGRLDESVIGCGNKVFDDLDWDGLPPIGAR-------------LIPGKSNMYAQYSSQTEQVKVTKYKESQVGYV----INISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQL 3350
            T  +YP E R  NLTY   + + +      +          E I E            +G +PIM+RS  C+L   +  +L K  E   ++GGYFI+ G++ +L  + Q R    +VQ    +K       H A IR   +  +    T ++KL+ R+ +     ++    Y +  IP+ +I +AL      E+ +       D+ ++E+L   + + F  ++R+     + L+++G +                    +EFL     L   E+ + F   Y                 M+ +L     D+  Q+  D    + +   G L  Q+F+        ++ R ++  + +  +  +K  +     ++K I + + Y L+TG+ G+      K  +    ++  +N Y + +      R    I  D K +  R+L    WG VCP      TP G       N  + +  +       +  FL +  ME  +            V +NG   G    R        +R  +   D    V    +I  K + I          FT++GR+ RP++ +                                           +  E ++EYI   E+  + I+ Q         N  +  D D            + TH E+    +    A   P+ ++N SPRN YQ  M KQ+MG    +   R D        PQ PL  ++  +    ++ P G N IVAIA Y+ Y+ ED+M++N +S++RG+ R   ++ Y+       + +T     P R     + +   +  +D LD DGL   G R             + P +  +  + +  +++   T  + ++ G V    +  +++G  +   + ++  +   IGDKF+SRHGQKG   +  +  D+P + +GIVPD + NPH+IPSRMTV  +IE +  K+AALS    D++ F T   VE     LR + Y   G+E  Y+G+ G+ + ++I  G  YYQRLRH+V+DK   R  G +  +TRQPV+GR   GG+R GEMERD +++HGA   L++R+++  SD   V  C  C          V+ ++  HNQ         + CK C+N I       ++ ++ +P   +    EL  MN+  +L
Sbjct:  109 THALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVL--IAQERSAGNIVQV--FKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSAR-TIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRE-----TALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGY-----------------MINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAI-----NAKTITSGLKYALATGNWGEQK----KAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE----TPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGV--HRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKI----------FTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQR----TNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKF-VKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPF-TDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEA-SDAFRVHICGICGLMT------VIAKLN-HNQ---------FECKGCDNKI-------DIYQIHIPYAAKLLFQELMAMNITPRL 1216          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Match: EDO33368 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7SSE2])

HSP 1 Score: 533.102 bits (1372), Expect = 3.340e-173
Identity = 323/970 (33.30%), Postives = 497/970 (51.24%), Query Frame = 3
Query:    6 EKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQK-VGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIV-EVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTP-DRGRLDESVIGCGN-----KVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTS--DIVEEYMAGLRSYKYDGF-GYERFYDGYRGRLMDSE 2882
            +K+ IQD  R +I+SFN  L+ G+                               P  +          +CR    TY  K+ +T+   I+N    ++T+ +  IP+M++SN C L  LS +EL++ +EE  E GGYFIV G + ++R L+  RRN+P+   +P  K  G+  T +   +R V+ D++   + L + ++    + +   K+ + +P+  I+KAL N +   ++++  KA+E+ +   + + MM    + +E       S LEY+G +FR  +++P W ++    +  I + I I++    +K+ L+++M  KL++   +KCC ES D+   QE+L  G L+  V +                                           M Y L+TG+L   +   ++Q +G  ++ D +N++RF+++FR  HRGAFF  M+++++R+LLPE+WGF+CPVHTPDG PCGLLNH +    V            + R L    M         D   +  V+++G++LG +    A   AN +R  KV  +    VP+  EI    I+  A+Q+PG++IF++  R++RPV N+   +  IE IG+FEQ Y+DI+        G       TH EL   ++ S  A  TPY ++N SPRN+YQCQM KQ+MG   ++ ++R+DNKLY    PQ PL R  ++D + M + PLG N IVA+ SYT YDMEDAMV+N  S ERG    +IYK   ++L P  + R   S +  G      ++   LD DG PP+GA L  G    Y+   + T +  V KY   + G +                  +RN  IGDKFSSRHGQKG+ S K    ++P SE G+ PD +FNPH  PSRMT+GMMIE +AGK AAL+    D+T F  S  D   +Y   L     +G  G      G+RG    S+
Sbjct:   30 QKQSIQDLVRPHIESFNFMLEEGL-------------------------------PLAA----------QCREKGSTYCSKLQVTLQWKIDNVPQGSVTKVIAAIPLMVKSNNCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIRMLILPRRNYPLAIIRPSWKGRGSFYTEYGVQMRSVKGDQSAVNMTLHYLNDGNVMMCIAYRKELYYVPVVFILKALMNVTDQHIYRELIKAEENNTFWKDCVAMMLR--TAQEEGAVNQKSVLEYIGLRFRVKMRLPDWFSDEAVAQYLIQQCICIHLDTNADKFNLLILMTRKLYALALEKCCAESADSPMNQEVLLGGHLYLMVLK-------------------------------------------MEYFLATGNLISKSGLALQQISGFTVVADRLNYFRFLSHFRCIHRGAFFSQMRTTSVRKLLPEAWGFLCPVHTPDGAPCGLLNHLAAGCQVVNVVPLVAH---MLRLLCTMGMIPVDAPVPGDYKNYYPVVMDGRVLGSVDRDLAPTLANRLRIMKVLGEER--VPQFLEICLVPITKVASQYPGLFIFSSPARMMRPVLNLAVNK--IEMIGSFEQVYMDIAIVQEELHEG-----VTTHMELKPTAMLSAIASMTPYSDFNQSPRNMYQCQMGKQTMGTPVHAFQHRTDNKLYRIQTPQSPLVRPASHDFYIMDEYPLGTNAIVAVISYTGYDMEDAMVLNKASYERGFAHGSIYKAQFVNLEPKSQDRTSSSNLQFGTLPDDPRIDGRLDADGFPPLGAHLSTGDP-YYSYIDTNTGEAVVKKYSNLEAGIID-----------------DRNPIIGDKFSSRHGQKGICSQKWPVENMPFSESGMTPDIIFNPHGFPSRMTIGMMIESMAGKSAALNGHVYDATPFTFSEDDSAIDYFGKLLVKWVEGINGLVLEVQGFRGWFNQSQ 883          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Match: EDO36897 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7SHD8])

HSP 1 Score: 316.235 bits (809), Expect = 1.189e-90
Identity = 289/1136 (25.44%), Postives = 508/1136 (44.72%), Query Frame = 3
Query:  201 IYPWECRRMNLTYEGK--VIMTMTLTINNSTPETITET---VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIR-CVRDDETTSEIKLFW----RDNTCPDLQLQIGKKYF--------QIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIA--INVKDYRE--KYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVP------RTTEIICKNISITAA-QFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSV-THQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDE----------SVIGCGNKVFDDLDWDGLPPIGARL-----IPGKSNMYAQYSSQTEQVK--------VTKYKESQVGYV----INISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
            + P E R  NLTY     V +T T   +N  P+  T +   +G IPIM+RS  C L+GL   +L + +E   + GGYFI+ G++ +L    +   N   V  K   K       + A IR C+  + ++      W       +    +  IG++          +IP+ ++ +AL   +  ++ +      ED  ++E++    ++    + Q   NV+ L ++GS  R           ++  +  + + +   + V D+ E  K   +  MV +L      +   +  D    + +   G L   +FR    N +  V    + F+ +  +  I+  +K      K I + + Y L+TG+ G       +   G+  + + + F   +++ R  +      + K +  R+L    WG +CP  TP+G   GL+ + ++   +   +  S   + +E +  +++ E+    S  + S  I V  NG  +G                  +  DP+ L+       R  +II   +S+    +   I I++++GR+ RP+                           +  +    ++EYI   E+  + ++      +  G +  S  TH E+    +    A   P+ ++N SPRN YQ  M KQ+MG    +   R D   +    PQ PL  +++ +    ++ P G N IVAIASYT Y+ ED++++N ++++RG+ R   Y+ Y  D    +G LD+          +V G  N  +D LD DGL   G R+     I GK+        + E            T  + S+ G V    + I++ G  +   I ++  R   IGDKF+SRHGQKG   +  +  D+P + +G+ PD + NPH+IPSRMT+G +IE + GK++A   +  D+T F  +  V++    L  Y Y   G E  Y G+ GR +++++ +G  YYQRL+H+V+DK   R  G +  +TRQP++GR   GG+R GEMERD +++HG+   L +R+ +  SD      C+ C     +  R                  N++ C+ C+N  + S       R+R+P   +    EL +M++  ++ V
Sbjct:  112 MMPNEARLRNLTYSAPFYVDITKTRIKDNEEPQVTTHSKMFIGKIPIMLRSTYCLLNGLLDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSKKDSKYS-----YTAEIRSCL--EHSSRPTSTMWVSMLAKGSSGGRRSAIGQRIVGSLPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDQEMMEMVKPSLDEAFVIQEQ---NVA-LNFIGS--RGARPGVTKERRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRMYAQKFIDRGKDFNIELALKP-----KVITDGLRYSLATGNWGD-QKKAHQARAGVSQVLNRLTFASTLSHLRRLN-SPIGREGKLAKPRQLHNTHWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFMEEWTMENLEEIT--PSAINTSTKIFV--NGCWVG------------------IHRDPDQLMSTLRKLRRRMDIIVSEVSMVRDFREREIRIYSDAGRICRPLLIVENQKLLLKKNHIDQLKEREYNEYSWQELVANGIVEYIDVNEEETVMVAMTPDELVEKGQAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIVAIASYTGYNQEDSVIMNASAIDRGLYRSVFYRSYR-DQESKKG-LDQEETFEKPTRDAVQGMRNASYDKLDEDGLIAPGIRVSGDDVIVGKTVTLPDNDDELEGTARKYSKKDASTFLRPSETGIVDQVMVTINQEGFKF-TKIKVRSVRVPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGLSPDVIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISQLLNDYGYHLRGNEVLYSGFTGRKLNTQVFLGPTYYQRLKHMVDDKIHSRARGPLQILTRQPMEGRSRDGGLRFGEMERDCMIAHGSAQFLNERLFEV-SDPYSCHVCNLCGLIAIANLR-----------------NNTFECRGCKNKTQVS-------RIRMPYAAKLLFQELMSMSIAPRMMV 1177          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Match: EDO30235 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7T1C9])

HSP 1 Score: 177.563 bits (449), Expect = 5.432e-51
Identity = 93/171 (54.39%), Postives = 116/171 (67.84%), Query Frame = 3
Query: 2517 ATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRL 3020
            A I ++++RN  IGDKFSSRHGQKG+ S K    ++P SE G  PD +FNPH  PSRMT+GMMIE +AGK AAL+    D+T F  S+    ++ +   L    YD FG ER Y G  GR  +++I MGVVYYQRLRH+V DK+QVRT G ID +T QPV+GRK  GGIR 
Sbjct:   16 ACIKLRIQRNPIIGDKFSSRHGQKGICSQKWPVKNMPFSESG-TPDIIFNPHGFPSRMTIGMMIESMAGKSAALNGHVYDATPFTFSEDDSAIDYFGKLLVKSGYDYFGTERLYSGIDGREFEADIFMGVVYYQRLRHMVADKFQVRTTGPIDALTHQPVQGRKRQGGIRF 185          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Match: EDO30236 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUS3])

HSP 1 Score: 107.842 bits (268), Expect = 3.399e-28
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 3
Query: 2877 SEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRI 3083
            S+I MGVVYYQRLRH+V DK+QVRT G ID +T QPV+GRK  GGIR GEMERD LL+HG +F LQDR+
Sbjct:    1 SDIFMGVVYYQRLRHMVADKFQVRTTGPIDALTHQPVQGRKRQGGIRFGEMERDALLAHGTSFLLQDRL 69          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Match: EDO44798 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUS3])

HSP 1 Score: 107.842 bits (268), Expect = 3.399e-28
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 3
Query: 2877 SEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRI 3083
            S+I MGVVYYQRLRH+V DK+QVRT G ID +T QPV+GRK  GGIR GEMERD LL+HG +F LQDR+
Sbjct:    1 SDIFMGVVYYQRLRHMVADKFQVRTTGPIDALTHQPVQGRKRQGGIRFGEMERDALLAHGTSFLLQDRL 69          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
Match: polr1b (RNA polymerase I subunit B [Source:NCBI gene;Acc:101159846])

HSP 1 Score: 755.362 bits (1949), Expect = 0.000e+0
Identity = 438/1139 (38.45%), Postives = 656/1139 (57.59%), Query Frame = 3
Query:   18 IQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKP---KCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKV-GTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVD-----RNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFIC--VMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVI----GCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGAT----ICI--KLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSD---IVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVP--WHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
            IQD T+ +I+SF+  +  G+   ++ + P EF +   ++I +      I  P   K SI     ++P ECR    +Y+GK++  ++  IN      I +++G +PIM++S LC+LHG+S +EL+KHHEE +E+GGYFIV G + ++R L+  RRN+P+   +P  K  G   T +   +RCV+DD T   + L + +N    L     K+ F +PL   +KAL + +  +++Q+  K +ED S  +       +    E   TT    L YLG +FR  L +P W TN +     ++E I I++K   EK+ L+ +M  KL S    +C +E+ D++  QE+LTPG L+    +  +  +L +V      R  K+F    S + + +++      +K    P  YLL+TG+L   T  G+ QN+GL ++ D +NF R++++FR  HRGA F  M+++++R+LLPESWGF+CPVHTPDG PCGL+NH + +  V A+++ +    +L   L  + ++    ++F+D     C  V+L+G ++G++    A    + +R  KV    E  VP  TEI+    +  A+ +PG+++FT   R++RPV N+  G+   E+IGTFEQ Y ++        +G       THQEL   S+ S  A F P+ ++N SPRN+YQCQM KQ+MG+  +S   RSDNKLY    PQ  L R   YD +N+   P G N IVA+ SYT YDMEDAM++N +S ERG    +IYK  ++DL  D+ R +++V+        KV D LD DGLP +G+ L  G    Y+  +  T Q  V  YK  +   V NI    +D G+     ICI  ++ RN  IGDKF+SRHGQKG+ S      D+P +E G+ PD LFNPH  PSRMT+GM+IE +AGK AAL  +S D+T F  S+    ++ +   LR+  Y+ +G ER Y G  GR ++++I +GVVYYQRLRH+V DK+QVRT G  D +T QPV GR + GGIR GEMERD LL+HG++F L DR+ +C SD+   + C +C S +     P+LE+ P  W     +A       C LC         ++++  V VP V R+F+ EL  MN+KV+L V
Sbjct:   35 IQDLTKAHIESFDQAVTDGLIRAVQAIPPLEF-MSKNDQISLSFVEAAIYSPAVAKGSICRETKVFPAECRGRRCSYKGKLVADISWAINGVPKGIIKQSLGQVPIMVKSRLCNLHGMSPKELVKHHEEAEEMGGYFIVNGIEKVVRMLIMPRRNYPIAMSRPKWKSRGQGYTQYGVSMRCVKDDHTAINLNLHYLENGTVMLNFIYQKELFFLPLGFALKALVDFTDFQIYQELIKGREDNSFYKTCVSEMLRV-VMEEGCTTRSKVLTYLGERFRVKLNLPEWYTNEQCANILLNECICIHLKSDTEKFYLLCLMSRKLFSHAKQECMEENPDSIMCQEVLTPGQLYLMFLKERMTAWLVSVKLSFDKRGSKVFARGWSTENVIKMLNMGSDVTK----PFEYLLATGNLNSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTASCEVVAASSPTTSLPALLCSLGVTPVDGTPAQAFSD-----CYPVVLDGSVVGWVETDLAPAVVDAMRRFKVLR--ERKVPPWTEIVLVPKTGKASLYPGLFLFTTPCRMMRPVQNLALGKQ--EFIGTFEQLYTNVGILEEEIEAG-----VTTHQELFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLHSFMDRSDNKLYRLQTPQSALVRPYMYDHYNLDNYPSGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSIYKTELVDLA-DKVRGEDAVVFGTKPGDPKVNDKLDADGLPRVGSVLQYGDP-FYSYINLNTGQSCVHFYKSQEACVVDNIKICSNDSGSGQFKRICITTRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSAALHGRSHDATPFTFSEENSALDHFGELLRAGGYNYYGTERLYSGVSGRELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNIQGGIRFGEMERDALLAHGSSFLLHDRLFNC-SDRSEAQMCVDCGSLL----SPLLEKPPPCW-----SAMRHRKTLCTLCGK-------SDSINAVSVPYVFRYFVAELAAMNIKVKLEV 1134          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
Match: polr3b (RNA polymerase III subunit B [Source:NCBI gene;Acc:101174911])

HSP 1 Score: 356.295 bits (913), Expect = 1.580e-104
Identity = 324/1185 (27.34%), Postives = 527/1185 (44.47%), Query Frame = 3
Query:   15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLT------INNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIW----LTNLEAGRRFIDEYIAINVK----DYREKYELILVMVLKL-----HSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQI--KSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISI-TAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIE--YIGTFEQ--------------TYLDISCQGGNTMSGGDSDVS--VTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDD-----------LDWDGLPPIGARL----------IPGKSNMYAQYSSQTEQVKVTK----YKESQVGYV--INISRNGSD-YGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            Q++   + +IDSFN F+   I+ I+K  +    +      +K +   + +   + S + TR + P ECR  ++TY   + + +  T      I N+ P      +G +PIM+RS+ C L G +  E  K +E   + GGYFIVKG + ++    Q  +N  +V       VG   T    + +  R +    + + + R NT  +            P+ +I K +  +S  E+ Q      E+  +      +      ++ Q  T    L +LG+K R   +  +W     T +E  R  +   I  +V     ++R K   + VMV ++      + V+D+      D    + +   G L   +F      + + + +     + K       ++VK   +D  +I N M   +STG+         +Q      +T  ++   +I+      R    F    K S  R L P  WG +CP  TP+G  CGL+ + ++ T +            ++  L   V ++N +  +  +  S F+ V LNG +LG I         NH +    F      + R    I + +SI T      +YI ++ GRL RP   +  G+P+++  +I    Q               YLD++ +    ++  +  ++   TH E+   ++    AG  PY ++N SPRN YQC M KQ+MG   Y+ R R D  +Y    PQ P+ ++KT +  + +K P G N  VA+ SY+ YD+EDA+V+N  SL+RG GRC +YK+    L     +  + V+G    + D            LD DG+   G ++          +P  +    + S+Q  Q +  +    YK S   Y+  + IS N  D +   I ++  R  +IGDKFSSRHGQKGV  L +   D+P  + G+ PD + NPH  PSRMTVG +IE +AGK   L  +    TAF  S  V++    L  Y Y+  G +    G  G  +++ I  G VYYQ+L+H+V DK   R  G    +TRQP +GR   GG+RLGEMERD L+ +GA+  L +R++  +SD   V  C  C                          G S  C  C++    S        +++P   +    EL +MN+  +L ++
Sbjct:   41 QVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALP------IGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQDRKGTVGASVTS-STHEKKSRTNIIVKQGRFYLRHNTLSE----------DAPIAIIFKGMGVESDQEIVQMI--GTEEHVMANFAPSLE---ECQKAQIFTQTQALRFLGNKVR---RQRMWGGPKKTKMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVILAQGENKVDDR------DYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQF-DVVKHMRQD--QITNGMVNAISTGNWSLKRFKMDRQG-----VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPI---IKLALNLGVEDVNLLCGEELSYPSVFL-VFLNGNILGVI--------RNHHKLVSTF-----RLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKGQPMVKSKHIEDLSQGYRNFEDFLHEGLVEYLDVNEENDCQIALYEHMINKETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNTKCTLRRYTNQTFDKVMG---PMLDAATRKPLWRHNILDADGICCPGEKVENKQILVNKSMPTVTQTPLEGSAQPGQPQYKEVPISYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGVCPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK-VKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM-ISSDAFEVDVCGQCGLL-----------------------GYSGWCHYCKSSCHVS-------SLKIPYACKLLFQELQSMNIIPRLKLS 1134          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
Match: polr3b (RNA polymerase III subunit B [Source:NCBI gene;Acc:101174911])

HSP 1 Score: 354.369 bits (908), Expect = 6.924e-104
Identity = 323/1185 (27.26%), Postives = 527/1185 (44.47%), Query Frame = 3
Query:   15 QIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERXXXXXXXXXXQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLT------INNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIW----LTNLEAGRRFIDEYIAINVK----DYREKYELILVMVLKL-----HSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHR--GAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQI--KSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISI-TAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIE--YIGTFEQ--------------TYLDISCQGGNTMSGGDSDVS--VTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDD-----------LDWDGLPPIGARL----------IPGKSNMYAQYSSQTEQVKVTK----YKESQVGYV--INISRNGSD-YGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVA 3359
            +++   + +IDSFN F+   I+ I+K  +    +      +K +   + +   + S + TR + P ECR  ++TY   + + +  T      I N+ P      +G +PIM+RS+ C L G +  E  K +E   + GGYFIVKG + ++    Q  +N  +V       VG   T    + +  R +    + + + R NT  +            P+ +I K +  +S  E+ Q      E+  +      +      ++ Q  T    L +LG+K R   +  +W     T +E  R  +   I  +V     ++R K   + VMV ++      + V+D+      D    + +   G L   +F      + + + +     + K       ++VK   +D  +I N M   +STG+         +Q      +T  ++   +I+      R    F    K S  R L P  WG +CP  TP+G  CGL+ + ++ T +            ++  L   V ++N +  +  +  S F+ V LNG +LG I         NH +    F      + R    I + +SI T      +YI ++ GRL RP   +  G+P+++  +I    Q               YLD++ +    ++  +  ++   TH E+   ++    AG  PY ++N SPRN YQC M KQ+MG   Y+ R R D  +Y    PQ P+ ++KT +  + +K P G N  VA+ SY+ YD+EDA+V+N  SL+RG GRC +YK+    L     +  + V+G    + D            LD DG+   G ++          +P  +    + S+Q  Q +  +    YK S   Y+  + IS N  D +   I ++  R  +IGDKFSSRHGQKGV  L +   D+P  + G+ PD + NPH  PSRMTVG +IE +AGK   L  +    TAF  S  V++    L  Y Y+  G +    G  G  +++ I  G VYYQ+L+H+V DK   R  G    +TRQP +GR   GG+RLGEMERD L+ +GA+  L +R++  +SD   V  C  C                          G S  C  C++    S        +++P   +    EL +MN+  +L ++
Sbjct:   35 KVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALP------IGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQDRKGTVGASVTS-STHEKKSRTNIIVKQGRFYLRHNTLSE----------DAPIAIIFKGMGVESDQEIVQMI--GTEEHVMANFAPSLE---ECQKAQIFTQTQALRFLGNKVR---RQRMWGGPKKTKMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVILAQGENKVDDR------DYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQF-DVVKHMRQD--QITNGMVNAISTGNWSLKRFKMDRQG-----VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPI---IKLALNLGVEDVNLLCGEELSYPSVFL-VFLNGNILGVI--------RNHHKLVSTF-----RLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKGQPMVKSKHIEDLSQGYRNFEDFLHEGLVEYLDVNEENDCQIALYEHMINKETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNTKCTLRRYTNQTFDKVMG---PMLDAATRKPLWRHNILDADGICCPGEKVENKQILVNKSMPTVTQTPLEGSAQPGQPQYKEVPISYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGVCPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSK-VKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM-ISSDAFEVDVCGQCGLL-----------------------GYSGWCHYCKSSCHVS-------SLKIPYACKLLFQELQSMNIIPRLKLS 1128          
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
Match: polr2b (RNA polymerase II subunit B [Source:NCBI gene;Acc:101166780])

HSP 1 Score: 298.901 bits (764), Expect = 3.357e-84
Identity = 225/827 (27.21%), Postives = 384/827 (46.43%), Query Frame = 3
Query: 1041 GSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNIS-ITAAQFPGIYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSV-THQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYV------------IDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARL-----IPGKSNMYAQYSSQ--------TEQVKVTKYKESQVGYVINISRNGSDYGATIC---IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQL 3350
            G L   +FR    N L  +    + F+ +  +  ++  +K+       I + + Y L+TG+ G +     +   G+  + + + F   +++ R  +      D K +  R+L    WG VCP  TP+G   GL+ + ++   +   +  S   + LE +  +++ E++   + AD ++   + +NG  +G   D   ++  N +R  +          R  +II   +S I   +   I I+T++GR+ RP+                           +  +    V+EYI T E+  + ++    +    G +  S  TH E+    +    A   P+ ++N SPRN YQ  M KQ+MG    +   R D   +    PQ PL  +++ +    ++ P G N IVAIASYT Y+ ED++++N ++++RG  R   Y+ Y             I   P R    E+  G  + ++D LD DGL   G R+     I GK+    +   +        T++   T  + S+ G V  +    +  G   C   ++  R   IGDKF+SRHGQKG   ++ +  D+P + +GI PD + NPH+IPSRMTVG +IE + GK++A   +  D+T F  +  V++    L  Y Y   G E  Y+G+ GR + S+I +G  YYQRL+H+V+DK   R  G +  + RQP++GR   GG+R GEMERD  ++HGA   L++R+ +  SD   V  C+ C     +  R                  +++ C+ C N  + S        +R+P   +    EL +M++  ++
Sbjct:  397 GPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRI-----ISDGLKYSLATGNWGDVK-KAHQARAGVSQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISP-AAIADATK---IFVNGCWVGIHKD--PEQLMNTLRKLR----------RQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTR----ETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNKRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEA-SDPYQVHVCNLCGLMAIANTRT-----------------HTYECRGCRNKTQISL-------IRMPYACKLLFQELMSMSIAPRM 1171          

HSP 2 Score: 54.299 bits (129), Expect = 9.043e-7
Identity = 46/156 (29.49%), Postives = 76/156 (48.72%), Query Frame = 3
Query:   27 FTRDYIDSFNAFLKPGIRNILKHLKP----TEFELGTGE-----RXXXXXXXXXXQKP-KCSIDNTRN-IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET-----VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVML 446
              R  +DSF+ F++  ++ I++   P     E +  +GE     R  +  E I + KP     D   + + P E R  NLTY   + + +T TI     + +        +G IPIM+RS  C L GL+  +L + +E   + GGYFI+ G++ +L
Sbjct:   39 LVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRFLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVL 194          
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000009943.1 (SMESG000009943.1)

HSP 1 Score: 2156.72 bits (5587), Expect = 0.000e+0
Identity = 1045/1045 (100.00%), Postives = 1045/1045 (100.00%), Query Frame = 3
Query:  255 MTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAPLDDEAVLSD 3389
            MTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVQASAASSDQDDSLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAPLDDEAVLSD
Sbjct:    1 MTMTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVQASAASSDQDDSLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAPLDDEAVLSD 1045          
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000009943.1 (SMESG000009943.1)

HSP 1 Score: 2153.64 bits (5579), Expect = 0.000e+0
Identity = 1043/1043 (100.00%), Postives = 1043/1043 (100.00%), Query Frame = 3
Query:  261 MTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAPLDDEAVLSD 3389
            MTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVQASAASSDQDDSLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAPLDDEAVLSD
Sbjct:    1 MTLTINNSTPETITETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVQASAASSDQDDSLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGKSNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSVAPLDDEAVLSD 1043          
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000055060.1 (SMESG000055060.1)

HSP 1 Score: 323.553 bits (828), Expect = 5.842e-93
Identity = 302/1202 (25.12%), Postives = 525/1202 (43.68%), Query Frame = 3
Query:   42 IDSFNAFLKPGIRNILKHLKPTEFE------LGTG--ERXXXXXXXXXXQKPKCSIDNT---RNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET----VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDE----TTSEIKLFWRDN-----TCPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDF--------------PKAKEDFSIVEVLTMMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVP------RTTEIICKNISITAA-QFPGIYIFTNSGRLLRPVYNIMFGE---------------------------PVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV--------IGCGNKVFDDLDWDGL-----------PPIGARLIPGKSNMYAQYSSQTEQVK---VTKYKESQVGYVINISRNGSDYGATICIKLERNT---DIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
            +DS++ F+   ++ I+   +  E E      LG     R +     I +++P C  + +     ++P E R  NLTY  ++++   + +N S  ET  ET    +G IP+M++S  C L  ++  +L + +E   + GGYFIV G++ ++  + Q R     V   P +    D+  ++  I+ + +D     +T  + L  +       T   +  Q+      IPL ++ +A+   S  ++ +                P   E F I +  T +          F  +    E  G+  ++ +K    +   E          ++N K Y   Y     MV KL      K   +  D +  + I   G L   +F+    N    +  N    + +NS+      ++S+      I +   Y L+TG+ G       +   G+  + + + F   +++ R  +      D K +  R+L    WG VCP  TP+G   GL+ + S+ T +   + S    + LE +    +  LN I   A  S+   +++NG  +G                  +  DP  LV       R+ ++I   +SI        I I ++ GRL RP+  +  G                             VIEY+ T E+    I+    +   G     + TH E+    +    A   P+ ++N SPRN YQ  M KQ++G+   +   R D   +     Q PLT S+       ++ P G N IVAI++YT Y+ ED++++N +++ERG+ R   Y+  V +     G   E++        +G   + +  LD DG+           P IG  +    S+ + + S  ++ +K       ++++ G+V    R   + G+T+     R T    IGDKF+SRHGQKG   +K +  D+P + +GI PD + NPH+IPSRMT+G +IE + GK+  L           T  ++E+Y   +  Y+         Y+G+ GR +++ +  G  YYQRL+H+V+DK   R  G +  +TRQP++GR   GG+R GEMERD  ++HGA+  L++R+ DC SD  IV  C +C   + +  +  +                 + CK+C           N+++V++P   +  + EL +M++K+ L+V
Sbjct:   32 LDSYDEFITSSVQQIVNEFQTVEIEGETKYNLGNDIPNRCEYKFGQISLRQP-CHYEPSGICTRLFPNEARLRNLTYSSELLIDYEMNVNKSNGETRKETEQVKIGEIPMMLKSTYCVLGNMTDIDLTQLNECPLDPGGYFIVNGSEKVI--IAQERMATNTVFVFPSK----DKYLYKCSIKSMVEDSFRSSSTFGVHLLAKGGSGKRTTGSKIVCQLPFIKEDIPLVIVFRAMGFVSERDVIERVIYDDKDMDMLDMLQPSIDEAFVIQDEQTAL---------NFIGSRGVKE--GTPIQQRIKFAKDILTKETLPHIGLTEASMNKKAYFLGY-----MVHKLLETSLGKRAPDDRDHMGNKRIDLAGPLLATLFKGFFKNLAKELKLNTTRMIDRNSDFHSSHAIRSNI-----ITDGFKYSLATGNWGD-QKKASETRKGVSQVLNRLTFVSALSHLRRTNSPTGR-DSKIAKPRQLHNTQWGMVCPAETPEGHAVGLVKNLSLMTNISVGSKSRPIIEFLEEW---GMENLNDISPSA-VSEGSKIIVNGSWIG------------------IHRDPNQLVKTLKKLKRSADVIVSEVSINQDFNNKEIKINSDGGRLCRPLIVVEDGSLSIKKSHIQRLGSLDNYQYGWKELVHGGVIEYLDTMEEENAMIAMVPSDISKGSQYCKTHTHCEIHPSMILGVCASIIPFPDHNQSPRNCYQSAMGKQALGFYTSNFHARMDTLAHVLYYSQKPLTASRAMTYLKYRELPAGVNAIVAISTYTGYNQEDSIILNESAIERGLFRSDFYR-TVSETVNHSGHQVEAIEKPNSQETLGMREREYTKLDDDGIIRVGSCVYGGDPLIGKTVTIPPSDEFTETSKSSDLMKRDCSVFMRKTEKGFVDKALRTTDNNGSTMVKVTMRTTKIPQIGDKFASRHGQKGTCGIKYRHEDMPFTAEGISPDIIINPHAIPSRMTIGHLIETLLGKVGQLEENWAMQHLLMTRLMLEKY---VDYYQNVIMNPPVLYNGFTGRKINTTVFFGPTYYQRLKHMVDDKIHSRARGPVTMMTRQPLEGRAKDGGLRFGEMERDCQIAHGASLFLKERLFDC-SDPYIVYICRHCGEIVIANPKTAV-----------------FTCKVCRKI-------PNVVKVKIPYAAKLLMQELKSMHIKLILNV 1152          
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000067331.1 (SMESG000067331.1)

HSP 1 Score: 322.013 bits (824), Expect = 2.017e-92
Identity = 299/1199 (24.94%), Postives = 526/1199 (43.87%), Query Frame = 3
Query:   21 QDFTRDYIDSFNAFLKPGIRNILKHLKPTEFE----LGTGERXXXXXXXXXXQ-----KPKCSIDNTRN-IYPWECRRMNLTYEGKVIMTMTLTINNSTPETITET-----VGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRYLVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNTC-----PDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLTMMFNK-FSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEYIA-INVKDYRE--KYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLFQQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMHYLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDMKSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVXXXXXXXXXXXXLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHIRYKKVFPDPELLVP------RTTEIICKNISITAAQFPG--IYIFTNSGRLLRPV---------------------------YNIMFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV-----------IGCGNKVFDDLDWDGLPPIGAR-----LIPGKSNMYAQYSSQTEQVKVTKYK---------ESQVGYVINISRNGSDYGATIC---IKLERNTDIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSYYRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVTRHFIHELTTMNVKVQLSV 3356
            +   R  +DSF+ FL   I+ I++     E +     G+G       E    Q           D T + + P + R  NLTY   V + +T   N  + + IT+T     +G IPIM+RS  C L  +S  +L + +E   + GGYFI+ G++ ++  + Q R     V   P +   + +   ++ +       +   + L  +  +      P +   +     +IP+ ++ +A+   S  ++ +      +D  + E+L    ++ F  ++     N     Y+GS+  +   +P+      A      E +  I   ++R   K   +  MV +L S    +   +  D +  + +   G L   +F+    N    +  N    + K      +E+       S  I + + Y L+TG+ G       +   G+  + + + F   +++ R  +  +   D K    R+L    WG VCP  TP+G   GL+ + ++   +   + S    + LE +  +S+ E+    + A+ ++   + +NG  +G                  +  DP+ L+       R+ +++   +SI    + G  I I+T+SGR+ RP+                           +  +  + V+EYI T E+    I+    +         + TH E+    +    A   P+ ++N SPRN YQ  M KQ+MG    +   R D   +     Q PLT ++  +    ++ P G N IVAIASYT Y+ ED++++N +++ERG+ R   Y+   ++ +  R    E V           +G   + +  LD DG+   G R     ++ GK+          E V  +K+K         +++ G V  +    ++ G+  C   I+  +   IGDKF+SRHGQKG   ++ +  D+P + +GI PD + NPH+IPSRMTVG +IE + GK++A   +  D+T F  +  V +    L  Y Y+  G E  Y+GY GR M + +  G  YYQRL+H+V+DK   R  G +  +TRQP++GR   GG+R GEMERD  ++HGA   L++R++D  SD   +  C  C   + +  +         NQT        ++C  C      S       ++R+P   +    EL +M++ ++L V
Sbjct:   26 KGLVRQQLDSFDEFLMTSIQRIVEEFPKLEIQGETQYGSGCDTPNKCEYSFGQIYLSKATHWESDGTGSPMMPNDARLRNLTYCAPVFVDVTQK-NMRSDDEITDTTDRTCIGKIPIMLRSTYCLLSEMSDVDLAQLNECPLDPGGYFIINGSEKVI--IAQERMANNTVFVFPAKDKYSYKCNVKSMVEYSFRSASNLGVNLLAKSGSGKRVVGPKIVCTMPFLKQEIPIIILFRAMGFVSDRDIIEHTIYDPDDTDMHEMLKPSIDEAFVIQDEHHALN-----YIGSRGVK-PGIPVAQRIKFAKDVITKETLPHIGTTEFRSTRKAYFLGYMVHRLLSTALKRRNPDDRDHMGHKRLDLAGPLLAFLFKGFFKNLAKELKNNTLKIIDKT-----RELKAGLALKSNVITDGLKYSLATGNWGD-QKKASETRKGVSQVLNRLTFASTLSHLRRLNSPSGR-DGKIPKPRQLHNTQWGMVCPAETPEGHAVGLVKNLALMAYISVGSKSDPIIEFLEEWSMESLEEIAP-SAIANATK---IFINGSWVG------------------IHRDPDQLMATLKKLRRSMDVVVSEVSI-VRDYSGKEIKIYTDSGRICRPLIIVNDGKFAIKKEHIKRLKEKAHARYGWQELVSDGVVEYIDTLEEETSMIAMVPADITKNSQYCKTHTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLAHVLYYSQKPLTTTRAMEYLRFRELPAGINAIVAIASYTGYNQEDSVILNESAIERGIFRSEFYR--TVNESESRNNSTEFVENIEKPNKEETLGMREEEYVKLDADGIVSPGVRVSGGDVLLGKTVTLPATDDFIETVGNSKFKKRDCSLFMRKTEQGIVDKVMLTTNNEGSKFCKIRIRTTKIPQIGDKFASRHGQKGTCGIRYRQEDMPFTSEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANRGEIGDATPFNDAVNVRKISRVLSDYGYEANGNEIMYNGYTGRKMTTTVFFGPTYYQRLKHMVDDKIHSRARGPVTMMTRQPLEGRSKEGGLRFGEMERDCQIAHGAAQFLKERLLDV-SDSYFIYVCRICGQMVTANIK---------NQT--------FKCLSCNKSTEVS-------KIRLPYAAKLLSQELQSMHITMRLFV 1158          
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000054853.1 (SMESG000054853.1)

HSP 1 Score: 258.455 bits (659), Expect = 9.744e-75
Identity = 148/431 (34.34%), Postives = 233/431 (54.06%), Query Frame = 3
Query: 1914 THQELSAESVYSFTAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQIPLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMGRCAIYKHYVIDLTPDRGRLDESV--------IGCGNKVFDDLDWDGL-----------PPIGARLIPGKSNMYAQYSSQTEQVK---VTKYKESQVGYVINISRNGSDYGATICIKLERNT---DIGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGMMIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYDGYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKVGGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNC 3131
            TH E+    +    A   P+ ++N SPRN YQ  M KQ++G+   +   R D   +     Q PLT S+       ++ P G N IVAI++YT Y+ ED++++N +++ERG+ R   Y+  V +     G   E++        +G   + +  LD DG+           P IG  +    S+ + + S  ++ +K       ++++ G+V    R   + G+T+     R T    IGDKF+SRHGQKG   +K +  D+P + +GI PD + NPH+IPSRMT+G +IE + GK+ A+  +  D+T F     V +    L    Y+  G E  Y+G+ GR +++ +  G  YYQRL+H+V+DK   R  G +  +TRQP++GR   GG+R GEMERD  ++HGA+  L++R+ DC SD  IV  C +C
Sbjct:   17 THCEIHPSMILGVCASIIPFPDHNQSPRNCYQSAMGKQALGFYTSNFHARMDTLAHVLYYSQKPLTASRAMTYLKYRELPAGVNAIVAISTYTGYNQEDSIILNESAIERGLFRSDFYR-TVSETVNHSGHQVEAIEKPNSQETLGMREREYTKLDDDGIIRVGSCVYGGDPLIGKTVTIPPSDEFTETSKSSDLMKRDCSVFMRKTEKGFVDKALRTTDNNGSTLVKVTMRTTKIPQIGDKFASRHGQKGTCGIKYRHEDMPFTAEGITPDIIINPHAIPSRMTIGHLIETLLGKVGAIRGELGDATPFNDEINVGKICRLLSECDYESTGNEVLYNGFTGRKINTTVFFGPTYYQRLKHMVDDKIHSRARGPVTMMTRQPLEGRAKDGGLRFGEMERDCQIAHGASLFLKERLFDC-SDPYIVYICRHC 445          
The following BLAST results are available for this feature:
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
POLR1B0.000e+037.39RNA polymerase I subunit B [Source:HGNC Symbol;Acc... [more]
POLR1B0.000e+037.36RNA polymerase I subunit B [Source:HGNC Symbol;Acc... [more]
POLR1B0.000e+037.84RNA polymerase I subunit B [Source:HGNC Symbol;Acc... [more]
POLR1B0.000e+037.70RNA polymerase I subunit B [Source:HGNC Symbol;Acc... [more]
POLR1B4.885e-13141.93RNA polymerase I subunit B [Source:HGNC Symbol;Acc... [more]
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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 4
Match NameE-valueIdentityDescription
rpoa-20.000e+034.67DNA-directed RNA polymerase subunit beta [Source:... [more]
rpc-25.857e-10026.47DNA-directed RNA polymerase subunit beta [Source:... [more]
rpc-25.857e-10026.47DNA-directed RNA polymerase subunit beta [Source:... [more]
rpb-25.223e-8628.05DNA-directed RNA polymerase II subunit RPB2 [Sour... [more]
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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4
Match NameE-valueIdentityDescription
RpI1350.000e+033.77gene:FBgn0003278 transcript:FBtr0078054[more]
RpIII1284.987e-10627.35gene:FBgn0004463 transcript:FBtr0087977[more]
RpII1404.174e-9024.69gene:FBgn0262955 transcript:FBtr0082892[more]
RpII1404.174e-9024.69gene:FBgn0262955 transcript:FBtr0344600[more]
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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
polr1b0.000e+037.69RNA polymerase I subunit B [Source:ZFIN;Acc:ZDB-GE... [more]
polr1b0.000e+037.69RNA polymerase I subunit B [Source:ZFIN;Acc:ZDB-GE... [more]
polr3b7.011e-10627.41polymerase (RNA) III (DNA directed) polypeptide B ... [more]
polr3b7.011e-10627.41polymerase (RNA) III (DNA directed) polypeptide B ... [more]
polr2b4.261e-8427.33polymerase (RNA) II (DNA directed) polypeptide B [... [more]
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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
POLR1B0.000e+038.15polymerase (RNA) I polypeptide B [Source:NCBI gene... [more]
POLR1B0.000e+038.15polymerase (RNA) I polypeptide B [Source:NCBI gene... [more]
POLR1B0.000e+036.06polymerase (RNA) I polypeptide B [Source:NCBI gene... [more]
POLR1B6.032e-12134.86polymerase (RNA) I polypeptide B [Source:NCBI gene... [more]
POLR1B8.663e-11542.50polymerase (RNA) I polypeptide B [Source:NCBI gene... [more]
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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Polr1b0.000e+037.53polymerase (RNA) I polypeptide B [Source:MGI Symbo... [more]
Polr1b5.127e-12033.77polymerase (RNA) I polypeptide B [Source:MGI Symbo... [more]
Polr3b2.306e-10427.26polymerase (RNA) III (DNA directed) polypeptide B ... [more]
Polr2b1.605e-8227.18polymerase (RNA) II (DNA directed) polypeptide B [... [more]
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BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9H9Y6|RPA2_HUMAN0.000e+037.36DNA-directed RNA polymerase I subunit RPA2 OS=Homo... [more]
sp|P70700|RPA2_MOUSE0.000e+037.53DNA-directed RNA polymerase I subunit RPA2 OS=Mus ... [more]
sp|Q5REE8|RPA2_PONAB0.000e+037.11DNA-directed RNA polymerase I subunit RPA2 OS=Pong... [more]
sp|Q54BM1|RPA2_DICDI0.000e+034.82DNA-directed RNA polymerase I subunit rpa2 OS=Dict... [more]
sp|Q9P7X8|RPA2_SCHPO0.000e+035.18Probable DNA-directed RNA polymerase I subunit RPA... [more]
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BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3Q0KN970.000e+040.89Putative dna-directed RNA polymerase I subunit OS=... [more]
A0A5K3ENF30.000e+040.09Uncharacterized protein OS=Mesocestoides corti OX=... [more]
G4VEG30.000e+040.26Putative dna-directed RNA polymerase I subunit OS=... [more]
A0A4S2L4770.000e+038.62Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A564Y4U90.000e+040.05Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
polr1b0.000e+038.76RNA polymerase I subunit B [Source:NCBI gene;Acc:1... [more]
polr3b3.030e-10727.75RNA polymerase III subunit B [Source:NCBI gene;Acc... [more]
polr3b8.330e-10727.66RNA polymerase III subunit B [Source:NCBI gene;Acc... [more]
POLR2B2.867e-8327.87RNA polymerase II subunit B [Source:HGNC Symbol;Ac... [more]
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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 4
Match NameE-valueIdentityDescription
ENSPMAT00000001310.13.713e-8727.15pep scaffold:Pmarinus_7.0:GL477974:3852:23589:-1 g... [more]
ENSPMAT00000009064.11.165e-7933.91pep scaffold:Pmarinus_7.0:GL481227:16752:24008:-1 ... [more]
ENSPMAT00000008572.14.600e-6928.40pep scaffold:Pmarinus_7.0:GL476831:175452:211422:1... [more]
ENSPMAT00000002293.13.230e-1023.28pep scaffold:Pmarinus_7.0:GL487410:805:8051:1 gene... [more]
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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 3
Match NameE-valueIdentityDescription
RPA1350.000e+036.73RNA polymerase I second largest subunit A135 [Sour... [more]
RET18.055e-10426.09Second-largest subunit of RNA polymerase III; RNA ... [more]
RPB26.103e-8524.62RNA polymerase II second largest subunit B150; par... [more]
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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO333683.340e-17333.30DNA-directed RNA polymerase [Source:UniProtKB/TrE... [more]
EDO368971.189e-9025.44DNA-directed RNA polymerase [Source:UniProtKB/TrE... [more]
EDO302355.432e-5154.39DNA-directed RNA polymerase [Source:UniProtKB/TrE... [more]
EDO302363.399e-2871.01Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO447983.399e-2871.01Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4
Match NameE-valueIdentityDescription
polr1b0.000e+038.45RNA polymerase I subunit B [Source:NCBI gene;Acc:1... [more]
polr3b1.580e-10427.34RNA polymerase III subunit B [Source:NCBI gene;Acc... [more]
polr3b6.924e-10427.26RNA polymerase III subunit B [Source:NCBI gene;Acc... [more]
polr2b3.357e-8427.21RNA polymerase II subunit B [Source:NCBI gene;Acc:... [more]
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BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000009943.10.000e+0100.00SMESG000009943.1[more]
SMESG000009943.10.000e+0100.00SMESG000009943.1[more]
SMESG000055060.15.842e-9325.12SMESG000055060.1[more]
SMESG000067331.12.017e-9224.94SMESG000067331.1[more]
SMESG000054853.19.744e-7534.34SMESG000054853.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30001223 ID=SMED30001223|Name=DNA-directed RNA polymerase subunit beta|organism=Schmidtea mediterranea sexual|type=transcript|length=3396bp
TTATGGAGAAAAGACAAATTCAAGATTTTACTCGCGACTATATAGATTCT
TTTAATGCTTTTTTAAAACCTGGAATACGAAACATTTTAAAGCATCTTAA
ACCAACTGAATTCGAATTAGGAACTGGAGAAAGGATTAAAATTGTAATTG
AAAATATTATTATTCAAAAACCGAAATGCTCAATTGATAATACAAGAAAT
ATCTATCCTTGGGAGTGTCGTCGGATGAATTTAACATATGAAGGGAAAGT
TATAATGACTATGACTTTAACAATAAACAATTCCACGCCCGAAACCATCA
CAGAAACGGTTGGCACAATCCCAATAATGATCCGATCGAATTTATGTCAT
TTACATGGATTATCTGCCGAAGAATTGATAAAACACCACGAAGAAGACGA
CGAAGTCGGAGGATATTTTATTGTTAAAGGAAATCAAGTTATGCTGAGAT
ACTTGGTGCAAACCCGCCGAAATTTCCCAGTGGTTCAATTCAAACCACAT
CAAAAAGTCGGCACTGACAGAACCGGACATCAAGCTTACATTCGATGTGT
CCGCGATGACGAAACGACGAGTGAAATTAAACTATTTTGGCGAGACAACA
CTTGTCCCGATCTCCAGTTGCAAATCGGCAAGAAATATTTCCAGATTCCG
TTGCCAGTCATTATGAAAGCTTTGCAAAACAAATCCTATCTTGAAATGTT
TCAAGACTTTCCGAAAGCGAAAGAAGATTTCTCAATAGTCGAAGTGCTGA
CAATGATGTTCAATAAGTTTTCAACGCGAGAAAGGCAATTCACCACCAAT
GTTTCCTGCTTGGAATATCTCGGTAGCAAGTTCAGGGAGTTCCTGAAAAT
GCCAATCTGGCTGACGAATCTCGAGGCAGGTCGGCGATTTATTGACGAAT
ATATCGCAATCAATGTGAAGGATTACAGGGAGAAATACGAGTTGATTCTG
GTGATGGTGCTGAAATTGCACAGCTTTGTCAATGACAAATGTTGCCAGGA
ATCCACGGATACTCTCAACTTCCAGGAGATTCTCACGCCAGGATCTCTTT
TCCAGCAGGTTTTCCGCCTGACTCTTGTCAACTATCTCGCCAATGTCGAC
AGGAACGTTAAGATATTCATGAGCAAGAACTCCAACAAACCTATCAAGGA
AATTGTCAAGTCATCATTCAAAGACAGCAAGAGAATCCTGAATCCAATGC
ATTACTTGCTGTCAACTGGATCCCTCGGCCAGATAACCGTGCCGGGCGTC
AAGCAGAATAACGGATTGAGAATCATGACTGATAACATCAATTTCTATCG
TTTCATCGCCAATTTCCGTGCCTTTCACAGAGGAGCTTTCTTCATCGATA
TGAAATCGTCAACGATTCGTCGGTTGCTGCCGGAAAGTTGGGGATTCGTG
TGTCCTGTCCACACGCCTGACGGTACTCCCTGTGGACTGCTGAATCATTT
CAGCATCAATACCATGGTGCAAGCCTCAGCCGCCTCCTCGGACCAGGACG
ACAGCCTCGAGCGGTTCCTGAAGAAAAGTGTTATGGAGTTGAACCAAATC
AAGTCTTTCGCTGATAAGAGCCAATTTATCTGCGTGATGCTCAACGGGAA
ACTATTGGGGTATATTTACGACAGGTTTGCCCAGGAATTCGCCAATCACA
TCCGGTACAAAAAGGTATTTCCGGATCCGGAATTGCTGGTGCCGAGAACG
ACAGAAATCATTTGCAAAAACATTTCCATCACCGCAGCTCAATTTCCGGG
AATTTATATATTCACGAATTCCGGTCGATTGCTGCGTCCGGTTTACAATA
TCATGTTTGGTGAGCCGGTAATTGAGTATATCGGCACGTTTGAGCAGACA
TACCTGGACATTTCCTGCCAAGGAGGAAACACGATGAGCGGAGGGGATAG
TGACGTATCAGTCACCCATCAGGAGCTGAGTGCCGAGTCCGTGTACAGTT
TCACAGCCGGGTTCACGCCCTACCAGAATTACAATCCCTCACCGAGAAAT
CTCTACCAATGCCAAATGAGCAAGCAGAGCATGGGTTACACGTATTATTC
CACTCGGTACCGGTCCGATAATAAGCTCTACTGCTTTCTCGGCCCTCAGA
TCCCTCTGACAAGATCGAAAACCTACGATGAATTCAACATGAAAAAAAGG
CCTCTCGGGTATAATCCGATAGTTGCTATCGCCAGTTACACCGCCTATGA
CATGGAGGATGCCATGGTAATCAATTTGAACAGTTTGGAGCGCGGAATGG
GTAGATGTGCCATTTACAAGCATTACGTAATCGACCTGACCCCAGACCGA
GGGCGGTTGGACGAGAGTGTAATCGGATGTGGAAATAAGGTATTTGATGA
CCTTGACTGGGATGGATTGCCACCGATTGGGGCGAGGCTGATCCCCGGCA
AGAGTAACATGTATGCTCAATACAGCTCACAAACCGAGCAAGTGAAAGTC
ACCAAATACAAAGAAAGCCAAGTGGGGTACGTGATCAATATATCAAGAAA
TGGCAGCGATTATGGCGCGACAATCTGCATCAAACTGGAACGGAACACAG
ATATCGGTGACAAATTTTCCAGCCGTCACGGACAGAAAGGAGTCAACAGC
TTGAAGTTGCAAACTGTGGATTTGCCGGTGTCAGAAGATGGGATCGTTCC
GGATCAGCTGTTCAATCCTCACAGTATTCCCAGCAGAATGACAGTCGGAA
TGATGATCGAGTTCATTGCAGGCAAATTGGCTGCTCTCTCGTCGAAATCA
ATCGATTCCACGGCGTTCCAAACGTCTGACATTGTCGAGGAGTACATGGC
GGGCTTGAGATCGTATAAATATGATGGATTTGGTTACGAGCGGTTCTATG
ATGGGTATCGAGGAAGATTAATGGATTCAGAAATCACAATGGGAGTCGTT
TATTACCAGAGGTTGAGGCATTTGGTAGAGGATAAATACCAGGTGAGAAC
CATCGGGAAAATCGATAATATTACTCGTCAACCGGTGAAAGGAAGAAAGG
TTGGTGGTGGTATCCGTTTAGGAGAAATGGAAAGGGATGGGTTGCTGTCA
CATGGGGCAACATTTTGCCTGCAGGATAGGATTATTGACTGTAACTCAGA
CAAAGTGATCGTCCGTTACTGCTCGAATTGCAAGAGTTTTATCCATTCTT
ATTATCGGCCGGTTCTTGAGCAAGTTCCTTGGCACAACCAAACAGATAAC
GCCAAACATGGCAACAGTTGGAGATGCAAACTCTGCGAGAATGATATCCG
CTACAGCTATAGCAATGAAAACATGTTACGTGTCAGAGTTCCAGCCGTTA
CAAGACATTTCATTCATGAATTGACCACCATGAACGTGAAAGTGCAACTC
AGTGTGGCGCCGCTTGATGATGAAGCTGTATTGTCCGATTAAATAT
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protein sequence of SMED30001223-orf-1

>SMED30001223-orf-1 ID=SMED30001223-orf-1|Name=SMED30001223-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1130bp
MEKRQIQDFTRDYIDSFNAFLKPGIRNILKHLKPTEFELGTGERIKIVIE
NIIIQKPKCSIDNTRNIYPWECRRMNLTYEGKVIMTMTLTINNSTPETIT
ETVGTIPIMIRSNLCHLHGLSAEELIKHHEEDDEVGGYFIVKGNQVMLRY
LVQTRRNFPVVQFKPHQKVGTDRTGHQAYIRCVRDDETTSEIKLFWRDNT
CPDLQLQIGKKYFQIPLPVIMKALQNKSYLEMFQDFPKAKEDFSIVEVLT
MMFNKFSTRERQFTTNVSCLEYLGSKFREFLKMPIWLTNLEAGRRFIDEY
IAINVKDYREKYELILVMVLKLHSFVNDKCCQESTDTLNFQEILTPGSLF
QQVFRLTLVNYLANVDRNVKIFMSKNSNKPIKEIVKSSFKDSKRILNPMH
YLLSTGSLGQITVPGVKQNNGLRIMTDNINFYRFIANFRAFHRGAFFIDM
KSSTIRRLLPESWGFVCPVHTPDGTPCGLLNHFSINTMVQASAASSDQDD
SLERFLKKSVMELNQIKSFADKSQFICVMLNGKLLGYIYDRFAQEFANHI
RYKKVFPDPELLVPRTTEIICKNISITAAQFPGIYIFTNSGRLLRPVYNI
MFGEPVIEYIGTFEQTYLDISCQGGNTMSGGDSDVSVTHQELSAESVYSF
TAGFTPYQNYNPSPRNLYQCQMSKQSMGYTYYSTRYRSDNKLYCFLGPQI
PLTRSKTYDEFNMKKRPLGYNPIVAIASYTAYDMEDAMVINLNSLERGMG
RCAIYKHYVIDLTPDRGRLDESVIGCGNKVFDDLDWDGLPPIGARLIPGK
SNMYAQYSSQTEQVKVTKYKESQVGYVINISRNGSDYGATICIKLERNTD
IGDKFSSRHGQKGVNSLKLQTVDLPVSEDGIVPDQLFNPHSIPSRMTVGM
MIEFIAGKLAALSSKSIDSTAFQTSDIVEEYMAGLRSYKYDGFGYERFYD
GYRGRLMDSEITMGVVYYQRLRHLVEDKYQVRTIGKIDNITRQPVKGRKV
GGGIRLGEMERDGLLSHGATFCLQDRIIDCNSDKVIVRYCSNCKSFIHSY
YRPVLEQVPWHNQTDNAKHGNSWRCKLCENDIRYSYSNENMLRVRVPAVT
RHFIHELTTMNVKVQLSVAPLDDEAVLSD*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR037034RNA_pol_Rpb2_2_sf
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR015712DNA-dir_RNA_pol_su2
IPR007120DNA-dir_RNAP_su2_dom
IPR007645RNA_pol_Rpb2_3
IPR014724RNA_pol_RPB2_OB-fold
IPR009674Rpa2_dom_4
IPR007644RNA_pol_bsu_protrusion
IPR007641RNA_pol_Rpb2_7
IPR007121RNA_pol_bsu_CS
Vocabulary: molecular function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
GO:0016740transferase activity
GO:0016779nucleotidyltransferase activity
GO:0032549ribonucleoside binding
GO:0046872metal ion binding
Vocabulary: biological process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006360transcription from RNA polymerase I promoter
GO:0009561megagametogenesis
GO:0042254ribosome biogenesis
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
GO:0005736DNA-directed RNA polymerase I complex
GO:0005829cytosol
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.90.1800.10coord: 983..1116
e-value: 1.4E-27
score: 97.6
NoneNo IPR availableGENE3DG3DSA:3.90.1100.10coord: 327..514
e-value: 1.0E-11
score: 46.5
NoneNo IPR availablePANTHERPTHR20856:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2coord: 3..1114
NoneNo IPR availableSUPERFAMILYSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 3..1114
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 421..485
e-value: 3.6E-22
score: 78.3
IPR037034RNA polymerase Rpb2, domain 2 superfamilyGENE3DG3DSA:3.90.1110.10coord: 153..326
e-value: 9.5E-33
score: 115.4
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 7..383
e-value: 1.9E-32
score: 112.4
IPR014724RNA polymerase Rpb2, OB-foldGENE3DG3DSA:2.40.50.150coord: 678..844
e-value: 3.2E-108
score: 363.9
IPR007641RNA polymerase Rpb2, domain 7PFAMPF04560RNA_pol_Rpb2_7coord: 998..1113
e-value: 2.0E-12
score: 47.4
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 648..995
e-value: 1.3E-88
score: 297.7
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3DG3DSA:2.40.270.10coord: 648..978
e-value: 3.2E-108
score: 363.9
IPR009674DNA-directed RNA polymerase I subunit RPA2, domain 4PFAMPF06883RNA_pol_Rpa2_4coord: 531..591
e-value: 6.7E-11
score: 42.0
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 3..1114
IPR015712DNA-directed RNA polymerase, subunit 2CDDcd00653RNA_pol_B_RPB2coord: 10..1112
e-value: 0.0
score: 698.936
IPR007121RNA polymerase, beta subunit, conserved sitePROSITEPS01166RNA_POL_BETAcoord: 848..860