Lsfw2.2 protein

Overview


Name	Lsfw2.2 protein
Smed ID	SMED30001181
Length (bp)	778

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Lsfw2.2 protein (SMED30001181) t-SNE clustered cells

Violin plots show distribution of expression levels for Lsfw2.2 protein (SMED30001181) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Lsfw2.2 protein (SMED30001181) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Lsfw2.2 protein (SMED30001181) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30001181

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 15

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
pharynx	SMED30001181	h1SMcG0005194	dd_Smed_v4_1219_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30001181	h1SMcG0005194	dd_Smed_v4_1219_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30001181	h1SMcG0005194	dd_Smed_v4_1219_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30001181	h1SMcG0005194	dd_Smed_v4_1219_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30001181	h1SMcG0005194	dd_Smed_v4_1219_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30001181	h1SMcG0005194	dd_Smed_v4_1219_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parapharyngeal region	SMED30001181	h1SMcG0005194	dd_Smed_v4_1219_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30001181	h1SMcG0005194	dd_Smed_v4_1219_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchyma	SMED30001181	h1SMcG0005194	dd_Smed_v4_1219_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30001181	h1SMcG0005194	dd_Smed_v4_1219_1_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30001181	h1SMcG0005194	Contig45850	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30001181	h1SMcG0005194	Contig45850	newmark_ests	PMID:29674431 Fincher et al., 2018
head region	SMED30001181	h1SMcG0005194	OX_Smed_1.0.13602	ox_Smed_v2	PMID:24238224 Kao et al., 2013
secretory system	SMED30001181	h1SMcG0005195	dd_Smed_v6_1219_1	dd_Smed_v6	PMID:29674432 Plass et al., 2018
secretory system	SMED30001181	h1SMcG0005194	dd_Smed_v6_1219_1	dd_Smed_v6	PMID:29674432 Plass et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of Lsfw2.2 protein vs. Ensembl Human
Match: PLAC8L1 (PLAC8 like 1 [Source:HGNC Symbol;Acc:HGNC:31746])

HSP 1 Score: 65.4698 bits (158), Expect = 2.059e-12
Identity = 37/125 (29.60%), Postives = 58/125 (46.40%), Query Frame = 2

Query:  203 HQTSYVGNHGQTTVIIQQPSISTGGRL-----------WSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            H  S +  H   + +++QP     GR            WS+G+ S   D   C C +  P C    +   Y EC+C    +P + FALRI  R RHK+ GT+  D +    C+  ++CQ+ R++ 
Sbjct:   34 HFISNLRGHVPASAVVKQPVRGASGRTTITAIVQTGGGWSTGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPL-LPGSTFALRIGTRERHKIQGTLCEDWLAVHCCWAFSICQVARELK 157

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Human
Match: CNFN (cornifelin [Source:HGNC Symbol;Acc:HGNC:30183])

HSP 1 Score: 57.3806 bits (137), Expect = 4.288e-10
Identity = 26/86 (30.23%), Postives = 46/86 (53.49%), Query Frame = 2

Query:  284 WSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDM 541
            W +G+  C +DM  C C    P C   R+   + EC C+   +P  L ++R   R R+ + G++ +D    ++C  CA+CQ+ R++
Sbjct:   24 WHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCAPY-LPGGLHSIRTGMRERYHIQGSVGHDWAALTFCLPCALCQMAREL 108

[Close]

Query:  284 WSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDM 541
            W +G+  C +DM  C C    P C   R+   + EC C+   +P  L ++R   R R+ + G++ +D    ++C  CA+CQ+ R++
Sbjct:   24 WHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCAPY-LPGGLHSIRTGMRERYHIQGSVGHDWAALTFCLPCALCQMAREL 108

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Human
Match: PLAC8 (placenta associated 8 [Source:HGNC Symbol;Acc:HGNC:19254])

HSP 1 Score: 56.6102 bits (135), Expect = 8.561e-10
Identity = 33/112 (29.46%), Postives = 53/112 (47.32%), Query Frame = 2

Query:  239 TVIIQQPSISTG----GRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATK 562
             V++ QP +  G       W +G+C CF D   C C      C   ++ +  NEC     C+     A+R  +R R+ + G+I +D M    C  C +CQ+KRD++   A +
Sbjct:    7 VVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNEC-----CLCGTSVAMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINRRRAMR 113

[Close]

Query:  239 TVIIQQPSISTG----GRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATK 562
             V++ QP +  G       W +G+C CF D   C C      C   ++ +  NEC     C+     A+R  +R R+ + G+I +D M    C  C +CQ+KRD++   A +
Sbjct:    7 VVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNEC-----CLCGTSVAMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINRRRAMR 113

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BLAST of Lsfw2.2 protein vs. Ensembl Zebrafish
Match: ponzr5 (plac8 onzin related protein 5 [Source:ZFIN;Acc:ZDB-GENE-081104-325])

HSP 1 Score: 60.8474 bits (146), Expect = 1.891e-11
Identity = 34/106 (32.08%), Postives = 55/106 (51.89%), Query Frame = 2

Query:  251 QQPS---ISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECIC-----SSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            QQP    I+     WSSGIC C D++  CC +     C+      ++ EC+C         IP    A+R+  R+R+ + G+I  DC  +++C  C+ CQ+ R+M+
Sbjct:    4 QQPGQFMIAQTNDQWSSGICDCCDNVPECCFSFWCFPCFACSTARKHGECLCLPLLDGFGFIPAITLAMRVSVRSRYGIKGSICKDCAYSTFCGACSWCQISREMN 109

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Zebrafish
Match: ponzr5 (plac8 onzin related protein 5 [Source:ZFIN;Acc:ZDB-GENE-081104-325])

HSP 1 Score: 60.8474 bits (146), Expect = 2.128e-11
Identity = 34/106 (32.08%), Postives = 55/106 (51.89%), Query Frame = 2

Query:  251 QQPS---ISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECIC-----SSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            QQP    I+     WSSGIC C D++  CC +     C+      ++ EC+C         IP    A+R+  R+R+ + G+I  DC  +++C  C+ CQ+ R+M+
Sbjct:    7 QQPGQFMIAQTNDQWSSGICDCCDNVPECCFSFWCFPCFACSTARKHGECLCLPLLDGFGFIPAITLAMRVSVRSRYGIKGSICKDCAYSTFCGACSWCQISREMN 112

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Zebrafish
Match: plac8l1 (PLAC8 like 1 [Source:ZFIN;Acc:ZDB-GENE-091204-165])

HSP 1 Score: 60.4622 bits (145), Expect = 3.981e-11
Identity = 37/137 (27.01%), Postives = 62/137 (45.26%), Query Frame = 2

Query:  182 EYPGISTHQTSYVGNHGQTTVIIQQPSISTG----------GRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATK 562
            + PG +  + + VG+      ++ QP +             G  WS+G+     D  +      +P C    L  +Y EC+C    +P + FA+R+  R R K+ G +  D MT   CY  A+CQ+ R+M   + T+
Sbjct:    2 DSPGPNDVEVNPVGSEKMECPVLTQPGLGETTTTVTTVTQTGGDWSTGLFDVCGDASTLLMGTFVPCCLDLSLAHQYGECMCLPL-LPGSTFAMRVGIRERFKIRGNVCEDWMTVYCCYPLALCQMIREMKRRLKTQ 137

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Zebrafish
Match: ponzr2 (plac8 onzin related protein 2 [Source:ZFIN;Acc:ZDB-GENE-050411-41])

HSP 1 Score: 59.6918 bits (143), Expect = 5.811e-11
Identity = 36/112 (32.14%), Postives = 52/112 (46.43%), Query Frame = 2

Query:  236 TTVIIQQPS---ISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCC-------IPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDM 541
              ++I QP    IS     W S IC C DD+  CC      +CY       Y EC+C           IP    ++R   R R+ + GT+ NDC+ +++C  C  CQ+ R+M
Sbjct:    3 NVMVITQPQPTMISAHSDHWGSDICDCCDDVPECCFAFWCFSCYTCIQARNYGECLCLPLLDIFCGGMIPPITMSIRTSMRQRYGIQGTMCNDCVLSTFCRPCVWCQMSREM 114

[Close]

Query:  236 TTVIIQQPS---ISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCC-------IPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDM 541
              ++I QP    IS     W S IC C DD+  CC      +CY       Y EC+C           IP    ++R   R R+ + GT+ NDC+ +++C  C  CQ+ R+M
Sbjct:    3 NVMVITQPQPTMISAHSDHWGSDICDCCDDVPECCFAFWCFSCYTCIQARNYGECLCLPLLDIFCGGMIPPITMSIRTSMRQRYGIQGTMCNDCVLSTFCRPCVWCQMSREM 114

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BLAST of Lsfw2.2 protein vs. Ensembl Xenopus
Match: ifi35 (interferon induced protein 35 [Source:Xenbase;Acc:XB-GENE-1010748])

HSP 1 Score: 62.7734 bits (151), Expect = 5.611e-12
Identity = 41/142 (28.87%), Postives = 62/142 (43.66%), Query Frame = 2

Query:  128 NKFSRIDDSTDPILQQPPEYPGISTHQTSYVGNHGQTTVIIQQPSISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIP---NALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            N  S I +  D ++ QP    G +T +       GQ                W+S    CF D+  C C    P C   ++   Y EC    CC+P     + ALR   R R+ + GTI  DC+  ++C  CA+CQ+ R+++
Sbjct:    6 NYLSIIQNILDNVIFQPQAVQGYTTSK------FGQ----------------WNSDTFDCFRDVGICLCGAFFPMCVACKVAQDYGEC----CCLPLMGGTILALRTGIRERYHIQGTICTDCLCVTFCGPCALCQMARELE 121

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Xenopus
Match: ENSXETT00000008293.1 (novel protein similar to cornifelin [Source:NCBI gene;Acc:733751])

HSP 1 Score: 61.6178 bits (148), Expect = 9.994e-12
Identity = 36/111 (32.43%), Postives = 53/111 (47.75%), Query Frame = 2

Query:  236 TTVIIQQPSISTGGRL-----WSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIP---NALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            T  +I QP    G        W+S    CF D+  C C    P C   ++   Y EC    CC+P     + ALR   R R+ + GTI  DC+  ++C  CA+CQ+ R+++
Sbjct:    7 TQTVIFQPQAVQGYTTSKFGQWNSDTFDCFRDVGICLCGAFFPMCVACKVAQDYGEC----CCLPLMGGTILALRTGIRERYHIQGTICTDCLCVTFCGPCALCQMARELE 113

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Xenopus
Match: ifi35 (interferon induced protein 35 [Source:Xenbase;Acc:XB-GENE-1010748])

HSP 1 Score: 62.003 bits (149), Expect = 1.037e-11
Identity = 36/111 (32.43%), Postives = 53/111 (47.75%), Query Frame = 2

Query:  236 TTVIIQQPSISTGGRL-----WSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIP---NALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            T  +I QP    G        W+S    CF D+  C C    P C   ++   Y EC    CC+P     + ALR   R R+ + GTI  DC+  ++C  CA+CQ+ R+++
Sbjct:   17 TQTVIFQPQAVQGYTTSKFGQWNSDTFDCFRDVGICLCGAFFPMCVACKVAQDYGEC----CCLPLMGGTILALRTGIRERYHIQGTICTDCLCVTFCGPCALCQMARELE 123

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Xenopus
Match: myo19 (myosin XIX [Source:Xenbase;Acc:XB-GENE-999897])

HSP 1 Score: 59.6918 bits (143), Expect = 6.108e-11
Identity = 30/90 (33.33%), Postives = 49/90 (54.44%), Query Frame = 2

Query:  284 WSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIP---NALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            W+S +  C  D+  C C   LP C   ++   Y EC    CC+P     + A+R   R R+++ GTI NDC+  ++C  C +CQ+ R+++
Sbjct:   23 WNSDVFDCCQDLGICLCGTFLPLCLACKVAQDYGEC----CCLPVLNGTIIAMRTGIRERYQIPGTICNDCVCLTFCGPCTLCQMARELN 108

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Xenopus
Match: pskh2 (protein serine kinase H2 [Source:Xenbase;Acc:XB-GENE-957157])

HSP 1 Score: 59.6918 bits (143), Expect = 9.308e-10
Identity = 42/136 (30.88%), Postives = 68/136 (50.00%), Query Frame = 2

Query:  149 DSTDPILQQPPEYPGISTHQTSYVGNHGQTTVIIQQPSISTGGRLWSSGICSCFDDMESC----CCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
             S  P++ QP  YP  +T     V N    T   Q+P +      W++   +CF D+++C     C  ++P CY+ +L+   NE  C    +P A+ ++R   R RHK+ G++L D      C LCA CQ+ R++ 
Sbjct:  304 QSVPPVVTQP--YPQATTGSMGNVQNAFPGTSWKQKPYVPVS---WTTDFFNCFADLKTCLLGTVCPCIMP-CYLSKLF---NET-CFLGFLPGAMCSMRTGIRERHKIQGSLLQDYGAICCCPLCATCQVAREIK 429

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Mouse
Match: Plac8l1 (PLAC8-like 1 [Source:MGI Symbol;Acc:MGI:1916651])

HSP 1 Score: 66.6254 bits (161), Expect = 5.011e-13
Identity = 40/131 (30.53%), Postives = 64/131 (48.85%), Query Frame = 2

Query:  188 PGISTHQTSYVGNHGQTTVIIQQPS------------ISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            P    H  S + +H    V+++QP             + TGG  WS+G+ S   D + C   +L P C    +   Y EC+C    +P + FALRI  R RH++ GT+  DC+    C+  ++CQ+ R++ 
Sbjct:   29 PSEDEHLISNLRSHVPARVVVKQPIRGAIGRTTVAAIVQTGGD-WSTGLFSVCRDRKICFWGLLCPMCLECDIARHYGECLCWPL-LPGSTFALRIGTRERHRIQGTLCEDCVVVHCCWPFSICQVARELK 157

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Mouse
Match: Plac8 (placenta-specific 8 [Source:MGI Symbol;Acc:MGI:2445289])

HSP 1 Score: 61.2326 bits (147), Expect = 1.122e-11
Identity = 35/104 (33.65%), Postives = 53/104 (50.96%), Query Frame = 2

Query:  239 TVIIQQPSISTG--GRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            TVI+ QP          W + +C CF D   C C     TC   ++ +  NEC     C+     A+R  +R R+ + G+I +D M   +C +C+VCQLKRD++
Sbjct:    6 TVIVTQPGFVRAPQNSNWQTSLCDCFSDCGVCLCGTFCFTCLGCQVAADMNEC-----CLCGTTVAMRTLYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDIN 104

[Close]

Query:  239 TVIIQQPSISTG--GRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            TVI+ QP          W + +C CF D   C C     TC   ++ +  NEC     C+     A+R  +R R+ + G+I +D M   +C +C+VCQLKRD++
Sbjct:    6 TVIVTQPGFVRAPQNSNWQTSLCDCFSDCGVCLCGTFCFTCLGCQVAADMNEC-----CLCGTTVAMRTLYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDIN 104

[Close]

Query:  239 TVIIQQPSISTG--GRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            TVI+ QP          W + +C CF D   C C     TC   ++ +  NEC     C+     A+R  +R R+ + G+I +D M   +C +C+VCQLKRD++
Sbjct:    6 TVIVTQPGFVRAPQNSNWQTSLCDCFSDCGVCLCGTFCFTCLGCQVAADMNEC-----CLCGTTVAMRTLYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDIN 104

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Mouse
Match: Cnfn (cornifelin [Source:MGI Symbol;Acc:MGI:1919633])

HSP 1 Score: 58.5362 bits (140), Expect = 1.392e-10
Identity = 27/86 (31.40%), Postives = 46/86 (53.49%), Query Frame = 2

Query:  284 WSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDM 541
            W +G+  C +DM  C C    P C   R+   + EC C+   +P  L +LR   R R+ + G++ +D    ++C  CA+CQ+ R++
Sbjct:   36 WHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCAPY-LPGGLHSLRTGMRERYHIQGSVGHDWAALTFCLPCALCQMAREL 120

[Close]

BLAST of Lsfw2.2 protein vs. UniProt/SwissProt
Match: sp|Q3ZCB2|PLAC8_BOVIN (Placenta-specific gene 8 protein OS=Bos taurus OX=9913 GN=PLAC8 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.828e-12
Identity = 37/111 (33.33%), Postives = 57/111 (51.35%), Query Frame = 2

Query:  242 VIIQQPSISTG----GRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATK 562
            VI+ QP + +G       W +G+C CF D   C C     TC   ++ S  NEC     C+     A+R  +R R+ + G+I +D M    C LC++CQ+KRD++   A +
Sbjct:    9 VIVTQPGVGSGPAPQNSNWQTGLCDCFSDCGVCLCGTFCFTCLACQVASDMNEC-----CLCGTSVAMRTLYRTRYGIPGSICDDFMVTHCCPLCSLCQIKRDINRRRANR 114

[Close]

BLAST of Lsfw2.2 protein vs. UniProt/SwissProt
Match: sp|Q08EJ0|PL8L1_MOUSE (PLAC8-like protein 1 OS=Mus musculus OX=10090 GN=Plac8l1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 3.505e-12
Identity = 40/131 (30.53%), Postives = 64/131 (48.85%), Query Frame = 2

Query:  188 PGISTHQTSYVGNHGQTTVIIQQPS------------ISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            P    H  S + +H    V+++QP             + TGG  WS+G+ S   D + C   +L P C    +   Y EC+C    +P + FALRI  R RH++ GT+  DC+    C+  ++CQ+ R++ 
Sbjct:   29 PSEDEHLISNLRSHVPARVVVKQPIRGAIGRTTVAAIVQTGGD-WSTGLFSVCRDRKICFWGLLCPMCLECDIARHYGECLCWPL-LPGSTFALRIGTRERHRIQGTLCEDCVVVHCCWPFSICQVARELK 157

[Close]

BLAST of Lsfw2.2 protein vs. UniProt/SwissProt
Match: sp|A1L4L8|PL8L1_HUMAN (PLAC8-like protein 1 OS=Homo sapiens OX=9606 GN=PLAC8L1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.889e-12
Identity = 37/125 (29.60%), Postives = 58/125 (46.40%), Query Frame = 2

Query:  203 HQTSYVGNHGQTTVIIQQPSISTGGRL-----------WSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            H  S +  H   + +++QP     GR            WS+G+ S   D   C C +  P C    +   Y EC+C    +P + FALRI  R RHK+ GT+  D +    C+  ++CQ+ R++ 
Sbjct:   34 HFISNLRGHVPASAVVKQPVRGASGRTTITAIVQTGGGWSTGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPL-LPGSTFALRIGTRERHKIQGTLCEDWLAVHCCWAFSICQVARELK 157

[Close]

BLAST of Lsfw2.2 protein vs. UniProt/SwissProt
Match: sp|Q9JI48|PLAC8_MOUSE (Placenta-specific gene 8 protein OS=Mus musculus OX=10090 GN=Plac8 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 7.849e-11
Identity = 35/104 (33.65%), Postives = 53/104 (50.96%), Query Frame = 2

Query:  239 TVIIQQPSISTG--GRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            TVI+ QP          W + +C CF D   C C     TC   ++ +  NEC     C+     A+R  +R R+ + G+I +D M   +C +C+VCQLKRD++
Sbjct:    6 TVIVTQPGFVRAPQNSNWQTSLCDCFSDCGVCLCGTFCFTCLGCQVAADMNEC-----CLCGTTVAMRTLYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDIN 104

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BLAST of Lsfw2.2 protein vs. UniProt/SwissProt
Match: sp|Q0VBW2|CNFN_BOVIN (Cornifelin OS=Bos taurus OX=9913 GN=CNFN PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.590e-10
Identity = 28/86 (32.56%), Postives = 46/86 (53.49%), Query Frame = 2

Query:  284 WSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDM 541
            W +G+  C +DM  C C    P C   R+   + EC C+   +P  L +LR   R R+++ G+I  D    ++C  CA+CQ+ R++
Sbjct:   23 WHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCTPY-LPGGLHSLRTGMRERYRIQGSIGKDWAALTFCLPCALCQMAREL 107

[Close]

BLAST of Lsfw2.2 protein vs. TrEMBL
Match: A0A0P0DI19 (Placenta specific protein 8 OS=Dugesia japonica OX=6161 GN=Plac 8 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.467e-31
Identity = 60/116 (51.72%), Postives = 81/116 (69.83%), Query Frame = 2

Query:  230 GQTT--VIIQQPSISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATKGSL 571
            G+T+  V+I QP      R+WSS ICSCF+D+E C  +   P CY+  +Y  YNEC CSS  +PN+L ALRIQHRNRH + GTI +DC+ ++    C +CQLKRDM ++++TKGSL
Sbjct:   19 GKTSENVVISQPK---SERMWSSEICSCFEDIEICLWSTFFPQCYLCCMYMEYNECFCSSLLVPNSLMALRIQHRNRHGIKGTICDDCIKSTCYGPCTMCQLKRDMKHIISTKGSL 131

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BLAST of Lsfw2.2 protein vs. TrEMBL
Match: A0A5J4NRE5 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0010981 PE=4 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.806e-21
Identity = 53/144 (36.81%), Postives = 76/144 (52.78%), Query Frame = 2

Query:  176 PPEYPGISTHQ---------TSYVGNHGQTTVIIQQPSIS--TGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATKGSLA 574
            PP YPG+++           T  +    Q  VI+ QP  +  TG R W  G+CSC ++  +C  T     C    +Y RY EC C+ C IP +   L ++HR+RH++ G+I  DC T   C  CA+C+L RDM YV    G+L+
Sbjct:    9 PPPYPGMASTSVPKASAPTATPLLSQPNQINVIVNQPEPTRGTGYRDWHDGLCSCGNNCGNCLLTAFFYPCVECHMYQRYGECCCTPCVIPMSGMVLAVKHRSRHRIVGSISGDCCTFMCCAPCALCRLYRDMVYVEGVNGTLS 152

[Close]

BLAST of Lsfw2.2 protein vs. TrEMBL
Match: G7Y8A7 (PLAC8-like protein 1 OS=Clonorchis sinensis OX=79923 GN=CLF_102652 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.127e-20
Identity = 50/141 (35.46%), Postives = 74/141 (52.48%), Query Frame = 2

Query:  155 TDPILQQPPEYPGISTHQTSYVGNHGQTTVIIQQPS--ISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATKGSL 571
              P+ Q PP  P ++              VI++QP   +S G R W  G+C C ++  +C  T L   C +  +Y  Y EC C+   +P A   L ++HR+RH++ G++  DC T   C  CA+C+L RDM +V A KGSL
Sbjct:   34 AQPLYQTPPAVPTVN--------------VIVEQPKPVVSEGYRDWKDGLCDCGNNCGNCILTALFYPCMVCHMYKLYGECCCTPLVVPMADMVLSVKHRSRHRIVGSVAGDCCTFMCCGPCALCRLYRDMTFVEALKGSL 160

[Close]

BLAST of Lsfw2.2 protein vs. TrEMBL
Match: A0A504YJJ1 (Placenta-specific protein OS=Fasciola gigantica OX=46835 GN=FGIG_01274 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.628e-19
Identity = 44/114 (38.60%), Postives = 64/114 (56.14%), Query Frame = 2

Query:  230 GQTTVIIQQPSISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATKGSL 571
            G    I  QP      R W  G+C C  D +SC C  L   CY+  +++RYNE +C+   IP  +  LR  HR R ++ G++  DC+T+++C  C++CQL RDM Y   T+G L
Sbjct:    8 GSHAPISDQPH-QIPFRDWHDGLCQCSSDWKSCACVTLCTWCYMCYMFNRYNENLCTPLLIPTPIMMLRTYHRGRERIVGSLFRDCVTSAFCPWCSLCQLDRDMKYQEITRGYL 120

[Close]

BLAST of Lsfw2.2 protein vs. TrEMBL
Match: A0A3Q0KMC6 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.744e-19
Identity = 47/115 (40.87%), Postives = 70/115 (60.87%), Query Frame = 2

Query:  245 IIQQPSI---STGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIP---NALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATKGSL 571
            ++QQP+     T  R WSSG+C+CFDD+ +CC  +  P CY+  LY++  E    SC IP     +  LRI+HR  H++ GT++ND  T  +C   A+CQLKRD+DY  + +  +
Sbjct:    7 VVQQPTSIQRQTSEREWSSGLCACFDDLPTCCLVLFCPHCYMCYLYNKEGE----SCWIPVCGAGILPLRIKHRIMHEIMGTLMNDVCTTCFCGQLAICQLKRDIDYTKSIRMEI 117

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Cavefish
Match: ponzr2 (cornifelin homolog [Source:NCBI gene;Acc:103025611])

HSP 1 Score: 70.0922 bits (170), Expect = 1.544e-14
Identity = 42/136 (30.88%), Postives = 66/136 (48.53%), Query Frame = 2

Query:  167 LQQPPEYPGISTHQTSYVGNHGQ--TTVIIQQPSISTGGRL---WSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCC-----IPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            ++Q    P  +   +    NH    T V+I  PS+    R+   W SGIC C DD+  CC       C+       Y +C+C         +P A  ++R+  R+R+ + GT+ NDC+ A+ C  CA CQ+ R+M+
Sbjct:   18 IKQCFTVPYQTKSASGASANHSAMTTKVVITPPSMVLESRVSDEWGSGICDCCDDVPECCFAFWCCPCFACIKTKEYGQCLCLPLLDICGIVPAATLSMRVSMRHRYGIKGTLCNDCLIATCCTSCAWCQMSREMN 153

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Cavefish
Match: ponzr2 (cornifelin homolog [Source:NCBI gene;Acc:103025611])

HSP 1 Score: 68.5514 bits (166), Expect = 6.738e-14
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 2

Query:  236 TTVIIQQPSISTGGRL---WSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCC-----IPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            T V+I  PS+    R+   W SGIC C DD+  CC       C+       Y +C+C         +P A  ++R+  R+R+ + GT+ NDC+ A+ C  CA CQ+ R+M+
Sbjct:   47 TKVVITPPSMVLESRVSDEWGSGICDCCDDVPECCFAFWCCPCFACIKTKEYGQCLCLPLLDICGIVPAATLSMRVSMRHRYGIKGTLCNDCLIATCCTSCAWCQMSREMN 157

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Cavefish
Match: ponzr6 (cornifelin homolog [Source:NCBI gene;Acc:103028345])

HSP 1 Score: 65.4698 bits (158), Expect = 5.661e-13
Identity = 38/117 (32.48%), Postives = 58/117 (49.57%), Query Frame = 2

Query:  230 GQTTVIIQ----QPSISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCC-------IPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDY 547
               TVI+Q    QP  +     WSSGIC C +DM  CC     P C +     +Y EC+C           IP   +++R   R R+ + G++ +DC  ++ C +CA CQ+ R++ Y
Sbjct:    2 ANPTVIVQPVAFQPPDNQRIVQWSSGICDCCEDMGICCFGFWCPYCLMCNTTKKYGECMCLPLVELCFGGLIPPVTYSMRSSMRERYHIQGSMCDDCCVSTCCGICAWCQIARELKY 118

[Close]

Query:  230 GQTTVIIQ----QPSISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCC-------IPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDY 547
               TVI+Q    QP  +     WSSGIC C +DM  CC     P C +     +Y EC+C           IP   +++R   R R+ + G++ +DC  ++ C +CA CQ+ R++ Y
Sbjct:    2 ANPTVIVQPVAFQPPDNQRIVQWSSGICDCCEDMGICCFGFWCPYCLMCNTTKKYGECMCLPLVELCFGGLIPPVTYSMRSSMRERYHIQGSMCDDCCVSTCCGICAWCQIARELKY 118

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Cavefish
Match: ponzr6 (cornifelin homolog [Source:NCBI gene;Acc:103028345])

HSP 1 Score: 65.0846 bits (157), Expect = 6.222e-13
Identity = 38/114 (33.33%), Postives = 58/114 (50.88%), Query Frame = 2

Query:  239 TVIIQ----QPSISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCC-------IPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDY 547
            TVI+Q    QP  +     WSSGIC C +DM  CC     P C +     +Y EC+C           IP   +++R   R R+ + G++ +DC  ++ C +CA CQ+ R++ Y
Sbjct:    5 TVIVQPVAFQPPDNQRIVQWSSGICDCCEDMGICCFGFWCPYCLMCNTTKKYGECMCLPLVELCFGGLIPPVTYSMRSSMRERYHIQGSMCDDCCVSTCCGICAWCQIARELKY 118

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009354.1 (pep scaffold:Pmarinus_7.0:GL483774:7229:14014:-1 gene:ENSPMAG00000008464.1 transcript:ENSPMAT00000009354.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 62.7734 bits (151), Expect = 7.158e-13
Identity = 36/109 (33.03%), Postives = 52/109 (47.71%), Query Frame = 2

Query:  233 QTTVIIQQPSIST----GGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDY 547
            Q  V++ QP   T    G   WSS +  CF D E C C          ++ S + EC C    +P AL ALR   R RH + GT+ +D ++   C  C  CQ+ R++ +
Sbjct:    2 QPPVLVTQPVAHTVNVQGQAQWSSHMMDCFQDTEICVCGFFCLPLLQCKVASDFGECFCVPM-LPGALMALRTGIRERHHIEGTVFDDFVSLWCCNHCTTCQMARELRH 109

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001184.1 (pep scaffold:Pmarinus_7.0:GL488356:6425:7851:-1 gene:ENSPMAG00000001063.1 transcript:ENSPMAT00000001184.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 48.521 bits (114), Expect = 4.144e-8
Identity = 23/72 (31.94%), Postives = 39/72 (54.17%), Query Frame = 2

Query:  332 CTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDY 547
            C I    C   R+   + EC C    +P +  ALR   R R+ + G+I +DC+  ++C+ CA CQ+ R++ +
Sbjct:   13 CGIFCMLCLNCRMAKDFGECFCLPI-LPGSSMALRTAIRERYHIQGSICDDCVMLTFCFCCATCQMAREIKH 83

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Nematostella
Match: EDO42647 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S0V8])

HSP 1 Score: 61.6178 bits (148), Expect = 2.461e-12
Identity = 37/108 (34.26%), Postives = 54/108 (50.00%), Query Frame = 2

Query:  230 GQTTVIIQQPSISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPN-ALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYV 550
            G TT  I Q       R WSSG+  C  D+  C  T L P   + ++  R  E +   CC  + A F LR + R    + G++ ND +  S C  CA+CQ+ R++D+V
Sbjct:   18 GTTTYTIGQQ------RDWSSGLFECTKDIGGCLVTFLCPCVTLCQISQRMGEGLAYGCCCADIAAFTLRAKLRTEQNIQGSLCNDAIHVSCCMHCALCQMSRELDHV 119

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Nematostella
Match: EDO42612 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S0W1])

HSP 1 Score: 53.9138 bits (128), Expect = 2.821e-9
Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 2

Query:  278 RLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYV 550
            R W SG+C CFDD+ SC      P   +  +  R  E  C  CC P AL  LR++ R    + G+++ND        LC +CQL R++ ++
Sbjct:   52 RDWHSGMCGCFDDIGSCLLGYFCPCFLLIDVSQRMGEGCCFPCCCPGALVGLRVKLRVEQNIQGSLINDYCAVQCLPLCVLCQLSRELKHL 142

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Nematostella
Match: EDO44794 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUR8])

HSP 1 Score: 48.521 bits (114), Expect = 1.307e-7
Identity = 30/98 (30.61%), Postives = 45/98 (45.92%), Query Frame = 2

Query:  284 WSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFAL-----------RIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            WSSGIC CF+D+ +C  T   P    G    +  E +  +C +   L  L           R + R +H + G+  NDC+   +C LCA  Q  R++ 
Sbjct:    3 WSSGICGCFEDINTCALTYFCPCVVAG----KNAEAVGENCFLHGFLSTLGCVGIFCGAKIREKIREKHGIEGSFGNDCIMHWFCPLCAYSQEARELK 96

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Medaka
Match: ponzr3 (cornifelin homolog A [Source:NCBI gene;Acc:101160195])

HSP 1 Score: 65.4698 bits (158), Expect = 2.752e-13
Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 2

Query:  254 QPSISTG-GRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECIC-----SSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            +P I+T     WSSGIC CFDD+ SCC       C+      +  EC+C        CIP    A+R+  R ++ + GTI  DC+ + +C  C+ CQ+ R+M 
Sbjct:   11 RPYITTSTSNEWSSGICDCFDDLRSCCFAFWCFPCFACITSKKAGECLCLPLLDGFGCIPPITTAMRVSIRKQYGIEGTICRDCVFSFFCGPCSWCQISREMK 113

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Medaka
Match: plac8l1 (PLAC8 like 1 [Source:NCBI gene;Acc:101175585])

HSP 1 Score: 62.7734 bits (151), Expect = 8.186e-12
Identity = 41/144 (28.47%), Postives = 66/144 (45.83%), Query Frame = 2

Query:  131 KFSRIDDSTDPILQQPPEYPGISTHQTSYVGNHGQTTVIIQQPSISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATK 562
            KFS++    D +L QP                 G         +I+  G  WS+G+ + + D  +C    L+P C    L  +Y EC+C    +P + FA+R+  R R+K+ G++  D      CY  AVCQ+ R+M   + T+
Sbjct:   37 KFSKLPAVEDVVLTQP-----------------GLGVTTTTITTITQTGGNWSTGLFNIWGDKTTCLLGALVPCCLDLSLAHQYGECLCLPL-LPGSTFAIRVGIRERYKIQGSVCEDWTAVYCCYPLAVCQMIREMKQRMKTQ 162

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Medaka
Match: ENSORLT00000028572.1 (cornifelin homolog [Source:NCBI gene;Acc:101172524])

HSP 1 Score: 54.6842 bits (130), Expect = 2.455e-9
Identity = 33/108 (30.56%), Postives = 51/108 (47.22%), Query Frame = 2

Query:  242 VIIQQPSISTGGR-----LWSSGICSCFDDMESCCCTILLP---TCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDM 541
            V+  QP     G       WS+G+CSCF+D   C      P   +CY      +Y E  C  C +P  + A+R   R  + + GT+ ND +    C LC +C++ R++
Sbjct:    5 VVTHQPGAGGYGTNVQTGEWSTGLCSCFNDCLICALGFFCPAGLSCYTAH---KYGENFCLGC-VPGGMTAMRTHMRLTYGIQGTVCNDAIMVFCCGLCEMCRMAREI 108

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Medaka
Match: ENSORLT00000031234.1 (cornifelin homolog B-like [Source:NCBI gene;Acc:105356361])

HSP 1 Score: 48.521 bits (114), Expect = 7.000e-7
Identity = 34/113 (30.09%), Postives = 54/113 (47.79%), Query Frame = 2

Query:  236 TTVIIQ-QPSIST-GGRLWSSGICSCFDDMESCC---CTILLPTCYIGRLYSR-----YNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            T +++Q QP I       WS+G+C C+ DM  CC   C + + TC + R           +CI    C+P A  A+R   R R+ + G+  +DC     CY  +  Q+ R++ 
Sbjct:    3 TRLVVQLQPRIRVQEAEQWSTGLCECYKDMGDCCFALCCLPVFTCKVTRAAGACPCLPLLDCIG---CVPPASLAMRASVRERYGIKGSAWSDCWYGCCCYTLSWLQISRELK 112

[Close]

BLAST of Lsfw2.2 protein vs. Ensembl Medaka
Match: ENSORLT00000037158.1 (cornifelin homolog B [Source:NCBI gene;Acc:101174737])

HSP 1 Score: 46.595 bits (109), Expect = 2.555e-6
Identity = 34/122 (27.87%), Postives = 55/122 (45.08%), Query Frame = 2

Query:  227 HGQTTVIIQQPSISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNEC----ICSSC------------CIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMD 544
            +G TTV+ +        R W+SG+ SC DDM SCC       C    +   + E     +C  C            C+P A  +LR+  R+ + + G++  D  T+ +C  C  CQ+ R++ 
Sbjct:    1 NGNTTVLKKF------HRTWNSGLLSCCDDMNSCCYGFWCCPCLACTVAGSFGENRCLPLCDICSPTAFSSFGIPLCVPPAGLSLRVGIRHMYGIKGSLCRDIATSCFCVWCNWCQMHRELK 116

[Close]

BLAST of Lsfw2.2 protein vs. Planmine SMEST
Match: SMESG000050221.1 (SMESG000050221.1)

HSP 1 Score: 314.694 bits (805), Expect = 2.873e-110
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 2

Query:  125 MNKFSRIDDSTDPILQQPPEYPGISTHQTSYVGNHGQTTVIIQQPSISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATKGSLAM 577
            MNKFSRIDDSTDPILQQPPEYPGISTHQTSYVGNHGQTTVIIQQPSISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATKGSLAM
Sbjct:    1 MNKFSRIDDSTDPILQQPPEYPGISTHQTSYVGNHGQTTVIIQQPSISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATKGSLAM 151

[Close]

BLAST of Lsfw2.2 protein vs. Planmine SMEST
Match: SMESG000050229.1 (SMESG000050229.1)

HSP 1 Score: 238.81 bits (608), Expect = 3.004e-80
Identity = 114/158 (72.15%), Postives = 129/158 (81.65%), Query Frame = 2

Query:  104 LEIAKRKMNKFSRIDDSTDPILQQPPEYPGISTHQTSYVGNHGQTTVIIQQPSISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATKGSLAM 577
            +   K   NKF+  DD+ +PILQQPP YPG+S  Q SY    GQTTVIIQQP+IS+GGRLWSSGICSCFDDMESCCC +L PTCY  RLYSRY EC CSSCC+PNALFALRIQHRNRHK+SG+ILND  TA +CY  + CQ+KRDMDYVVATKG+LAM
Sbjct:    1 MSYEKSFSNKFNSADDANEPILQQPPAYPGVSVGQPSY---PGQTTVIIQQPNISSGGRLWSSGICSCFDDMESCCCVMLCPTCYTARLYSRYGECCCSSCCVPNALFALRIQHRNRHKISGSILNDMCTAVFCYCLSACQMKRDMDYVVATKGTLAM 155

[Close]

BLAST of Lsfw2.2 protein vs. Planmine SMEST
Match: SMESG000050216.1 (SMESG000050216.1)

HSP 1 Score: 141.354 bits (355), Expect = 4.490e-42
Identity = 76/148 (51.35%), Postives = 98/148 (66.22%), Query Frame = 2

Query:  143 IDDSTDPILQQPPEYPG---ISTHQTSYVGNHGQTTVIIQQPSISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATKGSLAM 577
            ++D  +   ++PP Y G          Y G  GQTTVI+QQ + + GGR WSS +CSC DDMESCCC       Y   L S+Y EC C++C IP  + ALRIQHRNRHK+ G +LNDC T+ +C LC +CQ+KRDMDYV+ATKG+L +
Sbjct:    1 MNDPYNKFQEKPPGYGGEFQPVIQNQPYAG--GQTTVIVQQTTQNIGGRDWSSPMCSCCDDMESCCCVFFFGCFYTQYLMSKYGECCCAACLIPAPVMALRIQHRNRHKIMGNMLNDCCTSLYCGLCVLCQIKRDMDYVLATKGTLEL 146

[Close]

BLAST of Lsfw2.2 protein vs. Planmine SMEST
Match: SMESG000050208.1 (SMESG000050208.1)

HSP 1 Score: 137.117 bits (344), Expect = 1.152e-40
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 2

Query:  233 QTTVIIQQPSISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATKGSL 571
            QT +  QQ   ++  R WSSG+C+CFDD+ESCCC +  P CY+  LY RY+EC C+ CC+      L +QHRNRHK+ GTI NDC+ +  CY C++C+LKRDMD+V+ TKGSL
Sbjct:   19 QTVITTQQFITTSLVRNWSSGLCACFDDLESCCCVMCFPHCYVCHLYMRYDECCCTGCCLMGNPIYLAVQHRNRHKIQGTIFNDCLESFLCYQCSICRLKRDMDHVMNTKGSL 131

[Close]

BLAST of Lsfw2.2 protein vs. Planmine SMEST
Match: SMESG000050210.1 (SMESG000050210.1)

HSP 1 Score: 132.494 bits (332), Expect = 8.660e-39
Identity = 64/133 (48.12%), Postives = 87/133 (65.41%), Query Frame = 2

Query:  173 QPPEYPGISTHQTSYVGNHGQTTVIIQQPSISTGGRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNALFALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATKGSL 571
            Q   +P ++     +       TVIIQQ +     R W+SG+C+C DDMESCCC    P CY+  +Y +Y+EC C++C +  +   LRIQHRNRHK+ G+ILNDC T   C  C++CQLKRDM+YV++TKGSL
Sbjct:    7 QATVFPVVTQPAQVFSLQSVPQTVIIQQQA--ENKRQWNSGLCACIDDMESCCCVAFCPYCYLCHMYCQYDECCCTACLVGCSPMILRIQHRNRHKIMGSILNDCCTTLCCMQCSICQLKRDMNYVISTKGSL 137

The following BLAST results are available for this feature:

BLAST of Lsfw2.2 protein vs. Ensembl Human
BLAST of Lsfw2.2 protein vs. Ensembl Celegans
BLAST of Lsfw2.2 protein vs. Ensembl Fly
BLAST of Lsfw2.2 protein vs. Ensembl Zebrafish
BLAST of Lsfw2.2 protein vs. Ensembl Xenopus
BLAST of Lsfw2.2 protein vs. Ensembl Mouse
BLAST of Lsfw2.2 protein vs. UniProt/SwissProt
BLAST of Lsfw2.2 protein vs. TrEMBL
BLAST of Lsfw2.2 protein vs. Ensembl Cavefish
BLAST of Lsfw2.2 protein vs. Ensembl Sea Lamprey
BLAST of Lsfw2.2 protein vs. Ensembl Yeast
BLAST of Lsfw2.2 protein vs. Ensembl Nematostella
BLAST of Lsfw2.2 protein vs. Ensembl Medaka
BLAST of Lsfw2.2 protein vs. Planmine SMEST

BLAST of Lsfw2.2 protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
PLAC8L1	2.059e-12	29.60	PLAC8 like 1 [Source:HGNC Symbol;Acc:HGNC:31746]	[more]
CNFN	4.288e-10	30.23	cornifelin [Source:HGNC Symbol;Acc:HGNC:30183]	[more]
CNFN	4.288e-10	30.23	cornifelin [Source:HGNC Symbol;Acc:HGNC:30183]	[more]
PLAC8	8.561e-10	29.46	placenta associated 8 [Source:HGNC Symbol;Acc:HGNC...	[more]
PLAC8	8.561e-10	29.46	placenta associated 8 [Source:HGNC Symbol;Acc:HGNC...	[more]

BLAST of Lsfw2.2 protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Lsfw2.2 protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Lsfw2.2 protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ponzr5	1.891e-11	32.08	plac8 onzin related protein 5 [Source:ZFIN;Acc:ZDB...	[more]
ponzr5	2.128e-11	32.08	plac8 onzin related protein 5 [Source:ZFIN;Acc:ZDB...	[more]
plac8l1	3.981e-11	27.01	PLAC8 like 1 [Source:ZFIN;Acc:ZDB-GENE-091204-165]	[more]
ponzr2	5.811e-11	32.14	plac8 onzin related protein 2 [Source:ZFIN;Acc:ZDB...	[more]
ponzr2	5.811e-11	32.14	plac8 onzin related protein 2 [Source:ZFIN;Acc:ZDB...	[more]

BLAST of Lsfw2.2 protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ifi35	5.611e-12	28.87	interferon induced protein 35 [Source:Xenbase;Acc:...	[more]
ENSXETT00000008293.1	9.994e-12	32.43	novel protein similar to cornifelin [Source:NCBI g...	[more]
ifi35	1.037e-11	32.43	interferon induced protein 35 [Source:Xenbase;Acc:...	[more]
myo19	6.108e-11	33.33	myosin XIX [Source:Xenbase;Acc:XB-GENE-999897]	[more]
pskh2	9.308e-10	30.88	protein serine kinase H2 [Source:Xenbase;Acc:XB-GE...	[more]

BLAST of Lsfw2.2 protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Plac8l1	5.011e-13	30.53	PLAC8-like 1 [Source:MGI Symbol;Acc:MGI:1916651]	[more]
Plac8	1.122e-11	33.65	placenta-specific 8 [Source:MGI Symbol;Acc:MGI:244...	[more]
Plac8	1.122e-11	33.65	placenta-specific 8 [Source:MGI Symbol;Acc:MGI:244...	[more]
Plac8	1.122e-11	33.65	placenta-specific 8 [Source:MGI Symbol;Acc:MGI:244...	[more]
Cnfn	1.392e-10	31.40	cornifelin [Source:MGI Symbol;Acc:MGI:1919633]	[more]

BLAST of Lsfw2.2 protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q3ZCB2\|PLAC8_BOVIN	1.828e-12	33.33	Placenta-specific gene 8 protein OS=Bos taurus OX=...	[more]
sp\|Q08EJ0\|PL8L1_MOUSE	3.505e-12	30.53	PLAC8-like protein 1 OS=Mus musculus OX=10090 GN=P...	[more]
sp\|A1L4L8\|PL8L1_HUMAN	9.889e-12	29.60	PLAC8-like protein 1 OS=Homo sapiens OX=9606 GN=PL...	[more]
sp\|Q9JI48\|PLAC8_MOUSE	7.849e-11	33.65	Placenta-specific gene 8 protein OS=Mus musculus O...	[more]
sp\|Q0VBW2\|CNFN_BOVIN	2.590e-10	32.56	Cornifelin OS=Bos taurus OX=9913 GN=CNFN PE=3 SV=1	[more]

BLAST of Lsfw2.2 protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0P0DI19	3.467e-31	51.72	Placenta specific protein 8 OS=Dugesia japonica OX...	[more]
A0A5J4NRE5	1.806e-21	36.81	Uncharacterized protein OS=Paragonimus westermani ...	[more]
G7Y8A7	4.127e-20	35.46	PLAC8-like protein 1 OS=Clonorchis sinensis OX=799...	[more]
A0A504YJJ1	2.628e-19	38.60	Placenta-specific protein OS=Fasciola gigantica OX...	[more]
A0A3Q0KMC6	2.744e-19	40.87	Uncharacterized protein OS=Schistosoma mansoni OX=...	[more]

BLAST of Lsfw2.2 protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ponzr2	1.544e-14	30.88	cornifelin homolog [Source:NCBI gene;Acc:103025611...	[more]
ponzr2	6.738e-14	34.23	cornifelin homolog [Source:NCBI gene;Acc:103025611...	[more]
ponzr6	5.661e-13	32.48	cornifelin homolog [Source:NCBI gene;Acc:103028345...	[more]
ponzr6	5.661e-13	32.48	cornifelin homolog [Source:NCBI gene;Acc:103028345...	[more]
ponzr6	6.222e-13	33.33	cornifelin homolog [Source:NCBI gene;Acc:103028345...	[more]

BLAST of Lsfw2.2 protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2


Match Name	E-value	Identity	Description
ENSPMAT00000009354.1	7.158e-13	33.03	pep scaffold:Pmarinus_7.0:GL483774:7229:14014:-1 g...	[more]
ENSPMAT00000001184.1	4.144e-8	31.94	pep scaffold:Pmarinus_7.0:GL488356:6425:7851:-1 ge...	[more]

BLAST of Lsfw2.2 protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Lsfw2.2 protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3


Match Name	E-value	Identity	Description
EDO42647	2.461e-12	34.26	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO42612	2.821e-9	35.16	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO44794	1.307e-7	30.61	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Lsfw2.2 protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ponzr3	2.752e-13	35.92	cornifelin homolog A [Source:NCBI gene;Acc:1011601...	[more]
plac8l1	8.186e-12	28.47	PLAC8 like 1 [Source:NCBI gene;Acc:101175585]	[more]
ENSORLT00000028572.1	2.455e-9	30.56	cornifelin homolog [Source:NCBI gene;Acc:101172524...	[more]
ENSORLT00000031234.1	7.000e-7	30.09	cornifelin homolog B-like [Source:NCBI gene;Acc:10...	[more]
ENSORLT00000037158.1	2.555e-6	27.87	cornifelin homolog B [Source:NCBI gene;Acc:1011747...	[more]

BLAST of Lsfw2.2 protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000050221.1	2.873e-110	100.00	SMESG000050221.1	[more]
SMESG000050229.1	3.004e-80	72.15	SMESG000050229.1	[more]
SMESG000050216.1	4.490e-42	51.35	SMESG000050216.1	[more]
SMESG000050208.1	1.152e-40	53.98	SMESG000050208.1	[more]
SMESG000050210.1	8.660e-39	48.12	SMESG000050210.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30001181 ID=SMED30001181|Name=Lsfw2.2 protein|organism=Schmidtea mediterranea sexual|type=transcript|length=778bp
GAAATTACAAATCGACAGGTCAAATATTAATAAACAATTGATTATTGGTG
CAAAAGTGCAAAGTTTGTAGATAGTCAGTAAACAGGATGTGAAAACATAA
TTCTTAGAAATCGCAAAACGGAAAATGAATAAATTTAGCAGAATTGATGA
TTCAACTGATCCAATTCTCCAACAGCCCCCGGAGTATCCGGGAATTTCCA
CACATCAAACCTCATATGTCGGAAATCACGGACAAACGACAGTAATTATT
CAGCAGCCTAGCATTAGCACCGGTGGCCGATTATGGAGTTCTGGAATATG
TTCTTGTTTTGATGACATGGAGTCTTGCTGTTGTACAATATTATTACCTA
CTTGTTATATAGGGAGGTTATATTCACGATATAATGAATGCATATGCAGT
TCTTGTTGTATTCCGAATGCCTTATTTGCCTTGAGGATCCAACATAGAAA
TCGTCACAAAGTTTCTGGAACAATTTTAAACGACTGTATGACAGCGTCAT
GGTGCTATCTATGCGCAGTTTGCCAACTGAAGCGTGACATGGATTATGTA
GTTGCCACCAAGGGTTCACTTGCGATGTGAATGAAAAATTATTCCCAAAT
TTTTTATATTAACACAAAATTTCAATTTTGATTGTTTTTATTTCGATAAA
CTTTTAATGTTTTTGAATTGTATTCGCATTATTTAACATATATAATTTTA
AATTTTATATTTATTTTCAGGAAAATCTTTTAAGATTTTTATTTTGTGAT
TTTATGTCAATTTCCTTAACCAAAAAAA

protein sequence of SMED30001181-orf-1

>SMED30001181-orf-1 ID=SMED30001181-orf-1|Name=SMED30001181-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=152bp
MNKFSRIDDSTDPILQQPPEYPGISTHQTSYVGNHGQTTVIIQQPSISTG
GRLWSSGICSCFDDMESCCCTILLPTCYIGRLYSRYNECICSSCCIPNAL
FALRIQHRNRHKVSGTILNDCMTASWCYLCAVCQLKRDMDYVVATKGSLA
M*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **cellular component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral component of membrane

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000418	head
PLANA:0000484	secretory system

Vocabulary: **INTERPRO**
Term	Definition
IPR006461	PLAC_motif_containing

Vocabulary: **molecular function**
Term	Definition
GO:0003682	chromatin binding

Vocabulary: **biological process**
Term	Definition
GO:0008284	positive regulation of cell proliferation
GO:0009409	response to cold
GO:0040015	negative regulation of multicellular organism growth
GO:0042742	defense response to bacterium
GO:0043066	negative regulation of apoptotic process
GO:0045944	positive regulation of transcription from RNA polymerase II promoter
GO:0050873	brown fat cell differentiation

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	TMHMM	TMhelix		coord: 10..32

Main menu

Lsfw2.2 protein

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 15

Owlery

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