SMED30001112

Overview
NameSMED30001112
Smed IDSMED30001112
Length (bp)1217
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30001112 (SMED30001112) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30001112 (SMED30001112) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30001112 (SMED30001112) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30001112 (SMED30001112) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30001112

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 11

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30001112h1SMcG0010908 dd_Smed_v4_8351_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30001112h1SMcG0010908 dd_Smed_v4_8351_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30001112h1SMcG0010908 dd_Smed_v4_8351_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30001112h1SMcG0010908 dd_Smed_v4_8351_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30001112h1SMcG0010908 dd_Smed_v4_8351_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult colorimetric in situ hybridization evidence
cilated neuronSMED30001112h1SMcG0010908 dd_Smed_v4_8351_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30001112h1SMcG0010908 dd_Smed_v4_13515_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30001112h1SMcG0010908 dd_Smed_v4_13515_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30001112h1SMcG0010908 dd_Smed_v4_13515_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30001112h1SMcG0010908 dd_Smed_v4_8351_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
epidermisSMED30001112h1SMcG0010908 dd_Smed_v4_13515_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30001112 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.004867:17751..22080 +6007
Homology
BLAST of SMED30001112 vs. TrEMBL
Match: A0A267EGG4 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig034472g2 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.771e-11
Identity = 79/270 (29.26%), Postives = 123/270 (45.56%), Query Frame = 2
Query:  254 MKRAKLPVINRSLNSGPVWY---QNNWTDFP---TSEQRSEYIGHKLTHSVDYSPRFTYSISNIPFNDFTEYRDNYPLNKRNYSQNFLRRRDQIQLSKIPMESTSIYNNEFKSKDSVKAMPVKPKSSQLDFVFNDKENKQTVHSSLYKSDFKKWEKENSKMVSFKENVFDNQNA-----------------STDYQENFQKPP-PSRLVMPQPIYKKPIVPFASDTSYNITFVKHPYSKESLMLPTKSNLSVENKPFVGQSLYKSDYVEK 991
            M+  KLP I+RS    PVW     +  T+F    +S  R +++ H L    D  P+ +  +SN+PF   +E R  +    +   +    RR Q+ LS     ++SIY+ EF +K+       KPK+   D   + +  +    SS+YK D+ + E  N  M      +  +Q A                 +TDY  NF  P   +R ++P P YK P    + DTSY+  FV    ++ + M   ++       PFVGQS+YK D+V K
Sbjct:    1 MQSVKLPTISRS-QVRPVWLPEGADQLTEFQPQMSSIFRQDFVRHSLPKMPDLRPKISAYVSNLPFAATSEQRAAF-QGDQQPRRRVRVRRGQLALSTEAFNNSSIYSQEFVAKERGVTENYKPKT---DASLSQEPFQ---ASSVYKLDYPRHET-NPSMSETVAKLQQSQAARPQQYQSADPKLRCLDGTTDYGGNFLDPQVAARRLIP-PGYKPPTEKMSGDTSYSKVFVPFAGAQPAPMFKPQTVAFASGAPFVGQSVYKDDFVPK 260          
BLAST of SMED30001112 vs. TrEMBL
Match: A0A267GXT6 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig034472g1 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.396e-11
Identity = 79/270 (29.26%), Postives = 123/270 (45.56%), Query Frame = 2
Query:  254 MKRAKLPVINRSLNSGPVWY---QNNWTDFP---TSEQRSEYIGHKLTHSVDYSPRFTYSISNIPFNDFTEYRDNYPLNKRNYSQNFLRRRDQIQLSKIPMESTSIYNNEFKSKDSVKAMPVKPKSSQLDFVFNDKENKQTVHSSLYKSDFKKWEKENSKMVSFKENVFDNQNA-----------------STDYQENFQKPP-PSRLVMPQPIYKKPIVPFASDTSYNITFVKHPYSKESLMLPTKSNLSVENKPFVGQSLYKSDYVEK 991
            M+  KLP I+RS    PVW     +  T+F    +S  R +++ H L    D  P+ +  +SN+PF   +E R  +    +   +    RR Q+ LS     ++SIY+ EF +K+       KPK+   D   + +  +    SS+YK D+ + E  N  M      +  +Q A                 +TDY  NF  P   +R ++P P YK P    + DTSY+  FV    ++ + M   ++       PFVGQS+YK D+V K
Sbjct:    1 MQSVKLPTISRS-QVRPVWLPEGADQLTEFQPQMSSIFRQDFVRHSLPKMPDLRPKVSAYVSNLPFAATSEQRAAF-QGDQPPRRRVRVRRGQLALSTEAFNNSSIYSQEFVAKERGVTENYKPKT---DASLSQEPFQ---ASSVYKLDYPRHET-NPSMSETVAKLQQSQAARPQQYQSADPKLRCLDGTTDYGGNFLDPQVAARRLIP-PGYKPPTEKMSGDTSYSKVFVPFAGAQPAPMFKPQTVAFASGAPFVGQSVYKDDFVPK 260          
BLAST of SMED30001112 vs. TrEMBL
Match: A0A1I8HEK5 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig034472g3 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.503e-10
Identity = 78/270 (28.89%), Postives = 122/270 (45.19%), Query Frame = 2
Query:  254 MKRAKLPVINRSLNSGPVWY---QNNWTDFP---TSEQRSEYIGHKLTHSVDYSPRFTYSISNIPFNDFTEYRDNYPLNKRNYSQNFLRRRDQIQLSKIPMESTSIYNNEFKSKDSVKAMPVKPKSSQLDFVFNDKENKQTVHSSLYKSDFKKWEKENSKMVSFKENVFDNQNA-----------------STDYQENFQKPP-PSRLVMPQPIYKKPIVPFASDTSYNITFVKHPYSKESLMLPTKSNLSVENKPFVGQSLYKSDYVEK 991
            M+  KLP I+RS    PVW     +  T+F    +S  R +++ H L    D  P+ +  +SN+PF   +E R  +    +   +    RR Q+ LS     ++SIY+ EF +K+       KPK+   D   + +  +    SS+YK D+ + E  N  M      +  +Q A                 +TDY  NF  P   +R ++P P YK P    + DT Y+  FV    ++ + M   ++       PFVGQS+YK D+V K
Sbjct:    1 MQSVKLPTISRS-QVRPVWLPEGADQLTEFQPQMSSIFRQDFVRHSLPKMPDLRPKVSAYVSNLPFAATSEQRAAF-QGDQPPRRRVRVRRGQLALSTEAFNNSSIYSQEFVAKERGVTENYKPKT---DASLSQEPFQ---ASSVYKLDYPRHET-NPSMSETVAKLQQSQAARPQQYQSADPKLRCLDGTTDYGGNFLDPQVAARRLIP-PGYKPPTEKMSGDTCYSKVFVPFAGAQPAPMFKPQTVAFASGAPFVGQSVYKDDFVPK 260          
BLAST of SMED30001112 vs. TrEMBL
Match: A0A3M7RFF3 (Stabilizer of axonemal microtubules 2 OS=Brachionus plicatilis OX=10195 GN=BpHYR1_026727 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.420e-10
Identity = 60/194 (30.93%), Postives = 97/194 (50.00%), Query Frame = 2
Query:  419 SNIPFNDFTEYRDNYPLNKRNYSQNFLRRRDQIQLSKIPMESTSIYNNEFKSKDSVKAMPVKPKSS--QLDFVFNDKENKQTVHSSLYKSDFKKWE-KEN-SKMVSFKENVFDNQNASTDYQENFQKPPPSRLVMPQPIYKKPI-VPFASDTSYNITFVKHPYSKESLMLPTKSNLSVENKPFVGQSLYKSDYV 985
            S  PFND T YR++Y   K +    F R RD+ Q +KIP+++ +    +F +KD+ KA   KP++   + +  F+D         + +K+DFKKWE K N +K  +  +      + ST+Y   F + P  + +  +P  +K +   F  DT+Y   F K P  + +  L  ++     N PF G S YK  Y+
Sbjct:  195 STDPFNDRTGYREDY--VKHDLPTKFSRPRDEYQPNKIPLDNMTTMRRDFTAKDAEKARSFKPENGGYRSEAPFDD--------DTTHKNDFKKWEVKPNFAKKDNEWKPPLGEMDLSTNYNSEFTQKPAQKAMAIRPASRKKVEGKFEGDTTYGQDFRKWPGDRRTP-LKNQNEYQTPNVPFDGTSTYKGHYL 377          
BLAST of SMED30001112 vs. TrEMBL
Match: A0A1I8ISG6 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.586e-8
Identity = 77/280 (27.50%), Postives = 125/280 (44.64%), Query Frame = 2
Query:  287 SLNSG--PVWY---QNNWTDFP---TSEQRSEYIGHKLTHSVDYSPRFTYSISNIPFNDFTEYRDNYPLNKRNYSQNFLRRRDQIQLSKIPMESTSIYNNEFKSKDSVKAMPVKPKSSQLDFVFNDKENKQTVHSSLYKSDFKKWEKENSKMVSFKENVFDNQNA-----------------STDYQENFQKPP-PSRLVMPQPIYKKPIVPFASDTSYNITFVKHPYSKESLMLPTKSNLSVENKPFVGQSLYKSDYVEKERDNGNSELNIYQNPSSFL 1048
            +L+ G  PVW     +  T+F    +S  R +++ H L    D  P+ +  +SN+PF   +E R  +    +   +    RR Q+ LS     ++SIY+ EF +K+       KPK+   D   + +  +    SS+YK D+ + E  N  M      +  +Q A                 +TDY  NF  P   +R ++P P YK P    + DTSY+  FV    ++ + M   ++       PFVGQS+YK D+V K      S  N+ +N +  +
Sbjct:  394 TLHGGVRPVWLPEGADQLTEFQPQMSSIFRQDFVRHSLPKMPDLRPKVSAYVSNLPFAATSEQRAAF-QGDQPPRRRVRVRRGQLALSTEAFNNSSIYSQEFVAKERGVTENYKPKT---DASLSQEPFQA---SSVYKLDYPRHET-NPSMSETVAKLQQSQAARPQQYQSADPKLRCLDGTTDYGGNFLDPQVAARRLIP-PGYKPPTEKMSGDTSYSKVFVPFAGAQPAPMFKPQTVAFASGAPFVGQSVYKDDFVPKPLR--KSSANVLENRTGIM 662          
BLAST of SMED30001112 vs. Planmine SMEST
Match: SMESG000061228.1 (SMESG000061228.1)

HSP 1 Score: 700.664 bits (1807), Expect = 0.000e+0
Identity = 344/345 (99.71%), Postives = 344/345 (99.71%), Query Frame = 2
Query:   95 MVTIQQPDGCIGNASMPLLLFITSISLKFIFYTSSSRRILFLFGLLNLQSIKTMKRAKLPVINRSLNSGPVWYQNNWTDFPTSEQRSEYIGHKLTHSVDYSPRFTYSISNIPFNDFTEYRDNYPLNKRNYSQNFLRRRDQIQLSKIPMESTSIYNNEFKSKDSVKAMPVKPKSSQLDFVFNDKENKQTVHSSLYKSDFKKWEKENSKMVSFKENVFDNQNASTDYQENFQKPPPSRLVMPQPIYKKPIVPFASDTSYNITFVKHPYSKESLMLPTKSNLSVENKPFVGQSLYKSDYVEKERDNGNSELNIYQNPSSFLQTISHGNWYDKYPSQEFKEFRNTLFYQ 1129
            MVTIQQPDGCIGNASMPLLLFITSISLKFIFYTSSSRRILFLFGLLNLQSIKTMKRAKLPVINRSLNSGPVWYQNNWTDFPTSEQRSEYIGHKLTHSVDYS RFTYSISNIPFNDFTEYRDNYPLNKRNYSQNFLRRRDQIQLSKIPMESTSIYNNEFKSKDSVKAMPVKPKSSQLDFVFNDKENKQTVHSSLYKSDFKKWEKENSKMVSFKENVFDNQNASTDYQENFQKPPPSRLVMPQPIYKKPIVPFASDTSYNITFVKHPYSKESLMLPTKSNLSVENKPFVGQSLYKSDYVEKERDNGNSELNIYQNPSSFLQTISHGNWYDKYPSQEFKEFRNTLFYQ
Sbjct:    1 MVTIQQPDGCIGNASMPLLLFITSISLKFIFYTSSSRRILFLFGLLNLQSIKTMKRAKLPVINRSLNSGPVWYQNNWTDFPTSEQRSEYIGHKLTHSVDYSTRFTYSISNIPFNDFTEYRDNYPLNKRNYSQNFLRRRDQIQLSKIPMESTSIYNNEFKSKDSVKAMPVKPKSSQLDFVFNDKENKQTVHSSLYKSDFKKWEKENSKMVSFKENVFDNQNASTDYQENFQKPPPSRLVMPQPIYKKPIVPFASDTSYNITFVKHPYSKESLMLPTKSNLSVENKPFVGQSLYKSDYVEKERDNGNSELNIYQNPSSFLQTISHGNWYDKYPSQEFKEFRNTLFYQ 345          
BLAST of SMED30001112 vs. Planmine SMEST
Match: SMESG000009389.1 (SMESG000009389.1)

HSP 1 Score: 48.1358 bits (113), Expect = 8.006e-6
Identity = 57/268 (21.27%), Postives = 102/268 (38.06%), Query Frame = 2
Query:  353 SEYIGHKLTHSVDYSPRFTYSISNIPFNDFTEYRDNY---PLNKRNYSQNFLRRRDQIQLSK--IPMESTSIYNNEFKSKDSVKAMPVKPKSSQLDFVFNDKENKQTVHSSLYKSDFKKWE-KENSKMVSFKENVFDNQ----------------------------------NASTDYQENF------QKPPPSRLVMPQPIYKKPIVPFASDTSYNITFVKHPYSKESLMLPTKSNLSVENKPFVGQSLYKSDYVEKERDNGNSEL 1018
            S+Y+G+K        P  +   S  PF D T+YR +Y   PL  +      L+ +D+   +K  +P +  + +  +F  K+  KA   KP    L   F      Q+   +  + D+K WE K  S  ++    + D                                      +TDY++++      Q+P     V P   Y  P VPF  +++++  F++HP        P     +   + F   ++Y+ +Y +K  D   + L
Sbjct:  176 SDYVGYKAAPQASCKPDVSALHSEAPFEDMTDYRQSYVKHPLEGK------LKPKDRAMWAKSAVPFDGLTTFKRDFTPKEGGKAGSCKP----LAQAFQSGAPLQS--DTTNRIDYKPWEVKRPSHHLADPYKIPDGDMDMHTTYLRDYPEHPYMKSLAIKPKARGRSLEPFQGTTDYRDSYKKWNMGQRP----HVGPNLQYHPPSVPFEGESTHHAHFIQHPLDPRKSCKPDPRAYANSGE-FDDGTIYRMEYTKKHVDPCPAAL 426          
The following BLAST results are available for this feature:
BLAST of SMED30001112 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001112 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001112 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001112 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001112 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001112 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001112 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001112 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A267EGG42.771e-1129.26Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267GXT67.396e-1129.26Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8HEK51.503e-1028.89Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A3M7RFF38.420e-1030.93Stabilizer of axonemal microtubules 2 OS=Brachionu... [more]
A0A1I8ISG62.586e-827.50Uncharacterized protein OS=Macrostomum lignano OX=... [more]
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BLAST of SMED30001112 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001112 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001112 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001112 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001112 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30001112 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000061228.10.000e+099.71SMESG000061228.1[more]
SMESG000009389.18.006e-621.27SMESG000009389.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30001112 ID=SMED30001112|Name=SMED30001112|organism=Schmidtea mediterranea sexual|type=transcript|length=1217bp
CTGTGAGTAAACGGTAAACCAATTACAAGTGATTATTTGCTTTGAATTGT
TCTAAGTGGTGTCTGTGTGTATTTGCATGTGTGTATTGTTTTAAATGGTG
ACAATTCAGCAACCAGATGGTTGCATTGGTAACGCTTCAATGCCACTACT
TTTATTTATCACTTCAATTAGTTTAAAATTTATTTTTTATACATCTAGTT
CTCGTCGAATTCTATTTTTGTTTGGTTTACTGAATCTTCAGTCTATTAAA
ACTATGAAGCGGGCTAAACTTCCAGTAATTAATCGTTCCTTGAATTCTGG
ACCGGTTTGGTATCAAAATAATTGGACAGATTTCCCGACGAGTGAACAGA
GATCGGAATACATCGGTCATAAATTGACTCACTCTGTCGATTACAGTCCA
AGATTCACTTATTCAATTTCTAATATTCCATTCAATGATTTCACTGAATA
TCGGGATAATTATCCTTTAAATAAAAGAAATTATTCTCAAAACTTTCTTC
GACGACGAGATCAAATTCAACTTTCCAAGATACCGATGGAATCCACTTCA
ATTTACAACAATGAATTCAAGTCAAAGGACAGCGTTAAAGCCATGCCAGT
CAAGCCTAAATCATCTCAACTAGATTTCGTGTTTAATGACAAAGAAAATA
AACAAACTGTACATTCAAGTTTGTACAAATCAGATTTCAAAAAATGGGAG
AAAGAAAATAGCAAAATGGTATCGTTTAAAGAAAATGTATTTGACAATCA
AAACGCTTCAACAGATTATCAAGAAAATTTTCAAAAGCCTCCCCCATCGA
GATTGGTTATGCCTCAACCGATCTACAAGAAACCAATAGTACCATTCGCA
AGTGACACGAGCTATAATATTACATTTGTGAAGCATCCTTATTCCAAAGA
ATCATTGATGTTACCAACCAAGTCTAATTTGTCAGTGGAAAACAAACCTT
TTGTTGGGCAAAGTCTATACAAATCTGATTATGTTGAAAAAGAAAGAGAT
AATGGAAATAGTGAATTGAACATTTATCAAAATCCATCAAGTTTCCTACA
AACGATTTCTCATGGCAATTGGTATGACAAATATCCCAGTCAGGAATTCA
AAGAATTTAGAAATACACTTTTCTATCAAAAATGATAAAAAGTAAAAAAT
AAAATGATCTATAAGAAATTTTTCAGATTTTGTTGAGGTGAAATATATTT
TCTTGTTATAAAAAAAA
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protein sequence of SMED30001112-orf-1

>SMED30001112-orf-1 ID=SMED30001112-orf-1|Name=SMED30001112-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=347bp
MVTIQQPDGCIGNASMPLLLFITSISLKFIFYTSSSRRILFLFGLLNLQS
IKTMKRAKLPVINRSLNSGPVWYQNNWTDFPTSEQRSEYIGHKLTHSVDY
SPRFTYSISNIPFNDFTEYRDNYPLNKRNYSQNFLRRRDQIQLSKIPMES
TSIYNNEFKSKDSVKAMPVKPKSSQLDFVFNDKENKQTVHSSLYKSDFKK
WEKENSKMVSFKENVFDNQNASTDYQENFQKPPPSRLVMPQPIYKKPIVP
FASDTSYNITFVKHPYSKESLMLPTKSNLSVENKPFVGQSLYKSDYVEKE
RDNGNSELNIYQNPSSFLQTISHGNWYDKYPSQEFKEFRNTLFYQK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR033336SAXO1/2
Vocabulary: molecular function
TermDefinition
GO:0008017microtubule binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033336Stabilizer of axonemal microtubules 1/2PANTHERPTHR31516FAMILY NOT NAMEDcoord: 82..302
NoneNo IPR availablePANTHERPTHR31516:SF13STABILIZER OF AXONEMAL MICROTUBULES 2coord: 82..302
NoneNo IPR availableTMHMMTMhelixcoord: 12..34