40S ribosomal protein S23

Overview
Name40S ribosomal protein S23
Smed IDSMED30001096
Length (bp)582
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 40S ribosomal protein S23 (SMED30001096) t-SNE clustered cells

Violin plots show distribution of expression levels for 40S ribosomal protein S23 (SMED30001096) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 40S ribosomal protein S23 (SMED30001096) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 40S ribosomal protein S23 (SMED30001096) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30001096

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 16

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30001096SMESG000017264.1 SmedASXL_018676SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30001096SMESG000017264.1 dd_Smed_v4_290_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30001096SMESG000017264.1 dd_Smed_v4_290_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30001096SMESG000017264.1 dd_Smed_v4_290_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30001096SMESG000017264.1 dd_Smed_v4_290_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30001096SMESG000017264.1 dd_Smed_v4_290_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30001096SMESG000017264.1 dd_Smed_v4_290_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30001096SMESG000017264.1 dd_Smed_v4_290_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30001096SMESG000017264.1 dd_Smed_v4_290_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30001096SMESG000017264.1 dd_Smed_v4_290_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30001096SMESG000017264.1 dd_Smed_v4_290_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30001096SMESG000017264.1 dd_Smed_v4_290_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30001096SMESG000017264.1 dd_Smed_v4_290_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30001096SMESG000017264.1 dd_Smed_v4_290_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gamma neoblastSMED30001096SMESG000017264.1 dd_Smed_v6_290_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30001096SMESG000017264.1 dd_Smed_v6_290_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Human
Match: RPS23 (ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410])

HSP 1 Score: 251.906 bits (642), Expect = 2.602e-86
Identity = 122/142 (85.92%), Postives = 131/142 (92.25%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GK  G+RT RKLR HR+ ++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV +VSLLALYKGKKERPR+
Sbjct:    2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Human
Match: RPS23 (ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410])

HSP 1 Score: 251.906 bits (642), Expect = 2.602e-86
Identity = 122/142 (85.92%), Postives = 131/142 (92.25%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GK  G+RT RKLR HR+ ++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV +VSLLALYKGKKERPR+
Sbjct:    2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Human
Match: RPS23 (ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410])

HSP 1 Score: 216.083 bits (549), Expect = 2.931e-72
Identity = 104/120 (86.67%), Postives = 110/120 (91.67%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 476
            GK  G+RT RKLR HR+ ++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct:    2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Human
Match: RPS23 (ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410])

HSP 1 Score: 216.083 bits (549), Expect = 2.931e-72
Identity = 104/120 (86.67%), Postives = 110/120 (91.67%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 476
            GK  G+RT RKLR HR+ ++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct:    2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Human
Match: RPS23 (ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410])

HSP 1 Score: 167.933 bits (424), Expect = 2.323e-53
Identity = 81/100 (81.00%), Postives = 87/100 (87.00%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVL 416
            GK  G+RT RKLR HR+ ++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIE +   L
Sbjct:    2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEVSISTL 101
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Celegans
Match: rps-23 (40S ribosomal protein S23 [Source:UniProtKB/Swiss-Prot;Acc:Q19877])

HSP 1 Score: 254.603 bits (649), Expect = 1.050e-87
Identity = 121/142 (85.21%), Postives = 134/142 (94.37%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GKP G+ T RKL+ HR+++RW DK YKKAH+GTR+KSNPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNF+EENDEVLVSGFGRSGHAVGDIPGVRFKIVKV + SL+AL+KGKKERPR+
Sbjct:    2 GKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Celegans
Match: rps-23 (40S ribosomal protein S23 [Source:UniProtKB/Swiss-Prot;Acc:Q19877])

HSP 1 Score: 254.603 bits (649), Expect = 1.050e-87
Identity = 121/142 (85.21%), Postives = 134/142 (94.37%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GKP G+ T RKL+ HR+++RW DK YKKAH+GTR+KSNPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNF+EENDEVLVSGFGRSGHAVGDIPGVRFKIVKV + SL+AL+KGKKERPR+
Sbjct:    2 GKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Celegans
Match: mrps-12 (Mitochondrial Ribosomal Protein, Small [Source:UniProtKB/TrEMBL;Acc:Q9XTY5])

HSP 1 Score: 49.2914 bits (116), Expect = 1.479e-7
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 3 
Query:  240 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSG 425
            G SH KGIVL+ V    K+PNS  RKC  V+L   G ++ A++PN G  + ++E+ +VLV G
Sbjct:   72 GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLVKG 130
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Fly
Match: RpS23 (gene:FBgn0033912 transcript:FBtr0087575)

HSP 1 Score: 248.44 bits (633), Expect = 3.126e-85
Identity = 121/142 (85.21%), Postives = 131/142 (92.25%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GKP G+RT RK   HR+ +RWADKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DG LN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKV +VSLLALYK KKERPR+
Sbjct:    2 GKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Fly
Match: RpS23 (gene:FBgn0033912 transcript:FBtr0339970)

HSP 1 Score: 248.44 bits (633), Expect = 3.126e-85
Identity = 121/142 (85.21%), Postives = 131/142 (92.25%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GKP G+RT RK   HR+ +RWADKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DG LN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKV +VSLLALYK KKERPR+
Sbjct:    2 GKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Fly
Match: tko (gene:FBgn0003714 transcript:FBtr0070459)

HSP 1 Score: 57.7658 bits (138), Expect = 1.128e-10
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 3 
Query:  204 HLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVK 485
            H+ TR    P  G   AKG+VL+ +  + K+PNSA RKCV V+L   GK++ A++P  G  N  E N  +++   GR    + D+PGV+ K V+
Sbjct:   42 HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGIG-HNLQEHN--IVLCRVGR----LQDVPGVKLKAVR 127
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Fly
Match: tko (gene:FBgn0003714 transcript:FBtr0308831)

HSP 1 Score: 57.3806 bits (137), Expect = 1.611e-10
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 3 
Query:  204 HLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVK 485
            H+ TR    P  G   AKG+VL+ +  + K+PNSA RKCV V+L   GK++ A++P  G  N  E N  +++   GR    + D+PGV+ K V+
Sbjct:   56 HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGIGH-NLQEHN--IVLCRVGR----LQDVPGVKLKAVR 141
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Zebrafish
Match: rps23 (ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50])

HSP 1 Score: 252.292 bits (643), Expect = 1.330e-86
Identity = 122/142 (85.92%), Postives = 132/142 (92.96%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GK  G+RT RKLR HR++++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV +VSLLALYKGKKERPR+
Sbjct:    2 GKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Zebrafish
Match: MRPS12 (si:dkey-17e16.10 [Source:ZFIN;Acc:ZDB-GENE-091204-48])

HSP 1 Score: 49.6766 bits (117), Expect = 1.409e-7
Identity = 29/82 (35.37%), Postives = 52/82 (63.41%), Query Frame = 3 
Query:  240 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVK 485
            G    K +VL+ +  + K+PNSA RKC +V+L  NG++   ++P +G  + ++E++ VLV G GR+     D+PGV+  +++
Sbjct:   57 GHPQLKAVVLKTMIRKPKKPNSANRKCAQVRL-SNGQEAVVYIPGEG--HNLQEHNVVLVQG-GRT----QDLPGVKLAVIR 130
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Zebrafish
Match: MRPS12 (si:dkey-17e16.10 [Source:ZFIN;Acc:ZDB-GENE-091204-48])

HSP 1 Score: 49.6766 bits (117), Expect = 1.409e-7
Identity = 29/82 (35.37%), Postives = 52/82 (63.41%), Query Frame = 3 
Query:  240 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVK 485
            G    K +VL+ +  + K+PNSA RKC +V+L  NG++   ++P +G  + ++E++ VLV G GR+     D+PGV+  +++
Sbjct:   57 GHPQLKAVVLKTMIRKPKKPNSANRKCAQVRL-SNGQEAVVYIPGEG--HNLQEHNVVLVQG-GRT----QDLPGVKLAVIR 130
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Xenopus
Match: rps23 (ribosomal protein S23 [Source:NCBI gene;Acc:497003])

HSP 1 Score: 253.062 bits (645), Expect = 7.464e-87
Identity = 122/142 (85.92%), Postives = 133/142 (93.66%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GK  G+RT RKLR HR++++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR+GHAVGDIPGVRFK+VKV +VSLLALYKGKKERPR+
Sbjct:    2 GKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRAGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Xenopus
Match: rps23 (ribosomal protein S23 [Source:NCBI gene;Acc:497003])

HSP 1 Score: 253.062 bits (645), Expect = 8.257e-87
Identity = 122/142 (85.92%), Postives = 133/142 (93.66%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GK  G+RT RKLR HR++++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR+GHAVGDIPGVRFK+VKV +VSLLALYKGKKERPR+
Sbjct:    5 GKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRAGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 146
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Xenopus
Match: clic3 (chloride intracellular channel 3 [Source:Xenbase;Acc:XB-GENE-959390])

HSP 1 Score: 60.4622 bits (145), Expect = 2.111e-11
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 3 
Query:  222 KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVK 485
            K  P  G    KG+VL+ +  + K+PNSA RKC RV+L  NGK++  F+P +G  + ++E++ VLV G GR+     D+PGV+ KIV+
Sbjct:   58 KLGPTFGCPQLKGVVLKTMIRKPKKPNSANRKCARVRL-SNGKEVICFIPGEG--HNLQEHNIVLVEG-GRT----QDLPGVKLKIVR 137
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Mouse
Match: Rps23 (ribosomal protein S23 [Source:MGI Symbol;Acc:MGI:1913725])

HSP 1 Score: 251.906 bits (642), Expect = 1.786e-86
Identity = 122/142 (85.92%), Postives = 131/142 (92.25%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GK  G+RT RKLR HR+ ++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV +VSLLALYKGKKERPR+
Sbjct:    2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Mouse
Match: C330021F23Rik (RIKEN cDNA C330021F23 gene [Source:MGI Symbol;Acc:MGI:3612471])

HSP 1 Score: 97.8265 bits (242), Expect = 7.548e-26
Identity = 45/111 (40.54%), Postives = 70/111 (63.06%), Query Frame = -2 
Query:  177 SQK*NAANFDNLESDTGNITDGVSRSTESRY*NFIVFFNEVQATIVRYESGDFFTIFNQLNSDTLSDSRVRLFGFNTNLFQYNTLSVRSSTERIRFESST*MGFFVILICP 509
            SQ+ N   F++L++D+ NIT  ++ ST+S   NFI+F NEVQA I+ +E  D   + N+L+ D L D R+ LFG N   FQ+N+L +R + +RI  +    +GF V+ + P
Sbjct:    3 SQQRNIGYFNHLKADSRNITYSMTFSTKSSNQNFIIFLNEVQAAIIGHERCDLLPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGTPKRIGLQGCAQVGFLVLFVMP 113
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Mouse
Match: C330021F23Rik (RIKEN cDNA C330021F23 gene [Source:MGI Symbol;Acc:MGI:3612471])

HSP 1 Score: 97.8265 bits (242), Expect = 7.548e-26
Identity = 45/111 (40.54%), Postives = 70/111 (63.06%), Query Frame = -2 
Query:  177 SQK*NAANFDNLESDTGNITDGVSRSTESRY*NFIVFFNEVQATIVRYESGDFFTIFNQLNSDTLSDSRVRLFGFNTNLFQYNTLSVRSSTERIRFESST*MGFFVILICP 509
            SQ+ N   F++L++D+ NIT  ++ ST+S   NFI+F NEVQA I+ +E  D   + N+L+ D L D R+ LFG N   FQ+N+L +R + +RI  +    +GF V+ + P
Sbjct:    3 SQQRNIGYFNHLKADSRNITYSMTFSTKSSNQNFIIFLNEVQAAIIGHERCDLLPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGTPKRIGLQGCAQVGFLVLFVMP 113
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Mouse
Match: Gm2174 (predicted gene 2174 [Source:MGI Symbol;Acc:MGI:3780344])

HSP 1 Score: 87.8113 bits (216), Expect = 4.152e-22
Identity = 43/112 (38.39%), Postives = 69/112 (61.61%), Query Frame = -2 
Query:  177 SQK*NAANFDNLESDTGNITDGVSRSTESRY*NFIV-FFNEVQATIVRYESGDFFTIFNQLNSDTLSDSRVRLFGFNTNLFQYNTLSVRSSTERIRFESST*MGFFVILICP 509
            SQ+ N   F++L+ D+ +IT  ++ ST+S   N+I+ F NEVQA I+ +E  D   + N+L+ D L D R+ LFG N   FQ+N+L +R + +RI  +    +GF V+ + P
Sbjct:    1 SQQRNIGYFNHLKEDSRDITYSMTFSTKSS--NWIIIFLNEVQAAIIGHERCDLLPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGAPKRIGLQGCAQVGFLVLFVMP 110
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Mouse
Match: C330021F23Rik (RIKEN cDNA C330021F23 gene [Source:MGI Symbol;Acc:MGI:3612471])

HSP 1 Score: 84.3445 bits (207), Expect = 6.275e-21
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = -2 
Query:  177 STESRY*NFIVFFNEVQATIVRYESGDFFTIFNQLNSDTLSDSRVRLFGFNTNLFQYNTLSVRSSTERIRFESST*MGFFVILICP 434
            ST+S   NFI+F NEVQA I+ +E  D   + N+L+ D L D R+ LFG N   FQ+N+L +R + +RI  +    +GF V+ + P
Sbjct:    4 STKSSNQNFIIFLNEVQAAIIGHERCDLLPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGTPKRIGLQGCAQVGFLVLFVMP 89
[Close]
BLAST of 40S ribosomal protein S23 vs. UniProt/SwissProt
Match: sp|Q9GRJ3|RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 9.733e-88
Identity = 124/142 (87.32%), Postives = 134/142 (94.37%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GKP G+RT RKL+ HR+++RW DKDYKK+HLGTR+KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV SVSLLALYK KKERPR+
Sbjct:    2 GKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. UniProt/SwissProt
Match: sp|Q19877|RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans OX=6239 GN=rps-23 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 1.336e-86
Identity = 121/142 (85.21%), Postives = 134/142 (94.37%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GKP G+ T RKL+ HR+++RW DK YKKAH+GTR+KSNPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNF+EENDEVLVSGFGRSGHAVGDIPGVRFKIVKV + SL+AL+KGKKERPR+
Sbjct:    2 GKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. UniProt/SwissProt
Match: sp|Q86FP7|RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis OX=34621 GN=RpS23 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 3.662e-86
Identity = 122/142 (85.92%), Postives = 132/142 (92.96%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GKP G+RT RK R HR+ +RW DKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKV +VSLLALYK KKERPR+
Sbjct:    2 GKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. UniProt/SwissProt
Match: sp|Q90YQ1|RS23_ICTPU (40S ribosomal protein S23 OS=Ictalurus punctatus OX=7998 GN=rps23 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.037e-85
Identity = 122/142 (85.92%), Postives = 132/142 (92.96%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GK  G+RT RKLR HR++++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV +VSLLALYKGKKERPR+
Sbjct:    2 GKCRGLRTARKLRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. UniProt/SwissProt
Match: sp|P90707|RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi OX=6279 GN=rps-23 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.145e-85
Identity = 121/142 (85.21%), Postives = 131/142 (92.25%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GKP GIR  RKL+ HR+ +RW DK YKKAHLGTR+K+NPFG ASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFKIVKV + SL+AL+KGKKERPR+
Sbjct:    2 GKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. TrEMBL
Match: A9UDQ2 (Putative 40S ribosomal protein RPS23 OS=Flustra foliacea OX=478208 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 2.346e-87
Identity = 127/142 (89.44%), Postives = 135/142 (95.07%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GKP GIRT RK R HR+ ++W DKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNF+EENDEVLVSGFGRSGHAVGDIPGVRFKIVKV SVSLLAL+KGKKERPR+
Sbjct:    2 GKPRGIRTARKQRTHRRDQKWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVASVSLLALFKGKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. TrEMBL
Match: A0A3P7NVW7 (Uncharacterized protein OS=Dibothriocephalus latus OX=60516 GN=DILT_LOCUS5517 PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 9.354e-87
Identity = 122/145 (84.14%), Postives = 139/145 (95.86%), Query Frame = 3 
Query:  108 MTRGKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            MTRGKPSGI T RKLR+HR+K+RWADK YKKAHLGTR+K+NPFGGASHAKGIV+EK+GVEAKQPNSAIRKCVRVQL+KNGKKITAFVPNDGC+NFI++NDEVLV+GFGR GHAVGDIPGVRFK+VKV +VSLLALYK KK++PR+
Sbjct:    1 MTRGKPSGIYTARKLRIHRRKQRWADKQYKKAHLGTRWKANPFGGASHAKGIVVEKIGVEAKQPNSAIRKCVRVQLLKNGKKITAFVPNDGCMNFIDDNDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKHKKDKPRS 145
[Close]
BLAST of 40S ribosomal protein S23 vs. TrEMBL
Match: A8UAH0 (Putative ribosomal protein S23 OS=Barentsia elongata OX=478378 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 2.616e-86
Identity = 126/141 (89.36%), Postives = 134/141 (95.04%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPR 539
            GKPSG+RT RKLR HR+ +RWADKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLN IEENDEVLV+GFGR GHAVGDIPGVRFK+VKV  VSLLAL+KGKKERPR
Sbjct:    2 GKPSGLRTARKLRNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVAGVSLLALFKGKKERPR 142
[Close]
BLAST of 40S ribosomal protein S23 vs. TrEMBL
Match: A0A0X3NYN1 (40S ribosomal protein S23 OS=Schistocephalus solidus OX=70667 GN=RS23 PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 3.055e-86
Identity = 121/145 (83.45%), Postives = 139/145 (95.86%), Query Frame = 3 
Query:  108 MTRGKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            M+RGKPSGI T RKLR+HR+K+RWADK YKKAHLGTR+K+NPFGGASHAKGIV+EK+GVEAKQPNSAIRKCVRVQL+KNGKKITAFVPNDGC+NFI++NDEVLV+GFGR GHAVGDIPGVRFK+VKV +VSLLALYK KK++PR+
Sbjct:    1 MSRGKPSGIYTARKLRIHRRKQRWADKQYKKAHLGTRWKANPFGGASHAKGIVVEKIGVEAKQPNSAIRKCVRVQLLKNGKKITAFVPNDGCMNFIDDNDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKHKKDKPRS 145
[Close]
BLAST of 40S ribosomal protein S23 vs. TrEMBL
Match: A0A0K0D9X1 (Uncharacterized protein OS=Angiostrongylus cantonensis OX=6313 PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 3.187e-86
Identity = 124/142 (87.32%), Postives = 134/142 (94.37%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GKP GIRT RKL++HR+ +RW DK YKKAHLGTR+KSNPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNF+EENDEVLVSGFGRSGHAVGDIPGVRFKIVKV + SL AL+KGKKERPR+
Sbjct:    2 GKPKGIRTARKLKIHRQSQRWCDKAYKKAHLGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLSALFKGKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Cavefish
Match: rps23 (ribosomal protein S23 [Source:NCBI gene;Acc:103037943])

HSP 1 Score: 249.595 bits (636), Expect = 1.432e-85
Identity = 121/142 (85.21%), Postives = 132/142 (92.96%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GK  G+RT RKLR HR++++W DK YKKA+LGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV +VSLLALYKGKKERPR+
Sbjct:    2 GKCRGLRTARKLRDHRREQKWHDKQYKKANLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Cavefish
Match: rps23 (ribosomal protein S23 [Source:NCBI gene;Acc:103037943])

HSP 1 Score: 247.669 bits (631), Expect = 7.405e-85
Identity = 119/138 (86.23%), Postives = 130/138 (94.20%), Query Frame = 3 
Query:  129 GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            G+RT RKLR HR++++W DK YKKA+LGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV +VSLLALYKGKKERPR+
Sbjct:    5 GLRTARKLRDHRREQKWHDKQYKKANLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 142
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Cavefish
Match: ENSAMXT00000034582.1 (pep primary_assembly:Astyanax_mexicanus-2.0:22:3392541:3396262:1 gene:ENSAMXG00000031766.1 transcript:ENSAMXT00000034582.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 57.3806 bits (137), Expect = 1.092e-10
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = -2 
Query:  177 STESRY*NFIVFFNEVQATIVRYESGDFFTIFNQLNSDTLSDSRVRLFGFNTNLFQYNTLSVRSSTERIRFESST*MGFFVILICP 434
            +T+  + NFI       AT+V +ESG+   + +QL+ D L +SRVRL GFNT        +  SS+E +  +    +G  V+ I P
Sbjct:    4 TTKPCHQNFI-------ATVVGHESGNLLAVLDQLDPDALPNSRVRLLGFNT--------TAESSSEGVSLQGGAQIGLLVLFIVP 74
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Cavefish
Match: si:dkey-17e16.10 (mitochondrial ribosomal protein S12 [Source:NCBI gene;Acc:103026022])

HSP 1 Score: 56.9954 bits (136), Expect = 2.753e-10
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 3 
Query:  225 SNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVK 485
            SNP       K +VL+ +  + K+PNSA RKC RV+L  NGK++ AF+P +G  + ++E+  VLV G GR+     D+PGV+ KIV+
Sbjct:   60 SNP-----QLKAVVLKTLIKKPKKPNSANRKCARVRL-SNGKEVVAFIPGEG--HNLQEHHVVLVEG-GRT----QDLPGVKVKIVR 133
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008512.1 (pep scaffold:Pmarinus_7.0:GL478955:23541:27588:-1 gene:ENSPMAG00000007703.1 transcript:ENSPMAT00000008512.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 248.054 bits (632), Expect = 1.047e-85
Identity = 120/142 (84.51%), Postives = 131/142 (92.25%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GK  G+RT RKLR  R+++RW+DK YKKAHLGT  K+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV +VSLLALYK KKERPR+
Sbjct:    2 GKCRGLRTARKLRNLRREQRWSDKSYKKAHLGTALKANPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Sea Lamprey
Match: si:dkey-17e16.10 (mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380])

HSP 1 Score: 54.6842 bits (130), Expect = 4.444e-10
Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = 3 
Query:  240 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVK 485
            G    KG++L+    + K+PNSA RKC +V+L  NG+++ AF+P +G  + ++E++ VLV G GR+     D+PG++ KIV+
Sbjct:   69 GRPQIKGVILKTFIKKPKKPNSANRKCAKVRL-SNGEEVIAFIPGEG--HNLQEHNIVLVEG-GRT----QDLPGLQLKIVR 142
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Yeast
Match: RPS23A (Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit; required for translational accuracy; homologous to mammalian ribosomal protein S23 and bacterial S12; RPS23A has a paralog, RPS23B, that arose from the whole genome duplication; deletion of both RPS23A and RPS23B is lethal [Source:SGD;Acc:S000003350])

HSP 1 Score: 230.72 bits (587), Expect = 4.502e-79
Identity = 108/145 (74.48%), Postives = 129/145 (88.97%), Query Frame = 3 
Query:  108 MTRGKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            M +GKP G+ + RKLR+HR+  RWA+ +YKK  LGT FKS+PFGG+SHAKGIVLEK+G+E+KQPNSAIRKCVRVQLIKNGKK+TAFVPNDGCLNF++ENDEVL++GFGR G A GDIPGVRFK+VKV  VSLLAL+K KKE+PR+
Sbjct:    1 MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Yeast
Match: RPS23B (Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit; required for translational accuracy; homologous to mammalian ribosomal protein S23 and bacterial S12; RPS23B has a paralog, RPS23A, that arose from the whole genome duplication; deletion of both RPS23A and RPS23B is lethal [Source:SGD;Acc:S000006336])

HSP 1 Score: 230.72 bits (587), Expect = 4.502e-79
Identity = 108/145 (74.48%), Postives = 129/145 (88.97%), Query Frame = 3 
Query:  108 MTRGKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            M +GKP G+ + RKLR+HR+  RWA+ +YKK  LGT FKS+PFGG+SHAKGIVLEK+G+E+KQPNSAIRKCVRVQLIKNGKK+TAFVPNDGCLNF++ENDEVL++GFGR G A GDIPGVRFK+VKV  VSLLAL+K KKE+PR+
Sbjct:    1 MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Yeast
Match: MRPS12 (Mitochondrial protein; may interact with ribosomes based on co-purification experiments; similar to E. coli and human mitochondrial S12 ribosomal proteins [Source:SGD;Acc:S000005319])

HSP 1 Score: 46.9802 bits (110), Expect = 1.593e-7
Identity = 29/77 (37.66%), Postives = 49/77 (63.64%), Query Frame = 3 
Query:  255 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVK 485
            KG+VL  + ++ K+PNSA RK  RV+L  NG  ++A++P +G  +  +E+  V V G GR      D+PGV++ +++
Sbjct:   59 KGVVLRVMVLKPKKPNSAQRKACRVRLT-NGNVVSAYIPGEG--HDAQEHSIVYVRG-GR----CQDLPGVKYHVIR 127
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Nematostella
Match: EDO49731 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RFJ1])

HSP 1 Score: 250.366 bits (638), Expect = 2.482e-86
Identity = 120/142 (84.51%), Postives = 131/142 (92.25%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GKP G+RT RKLR HR+ ++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLN+IEENDEVL+SGFGR GHAVGDIPGVRFK+VKV +VSLLAL+K KKERPR+
Sbjct:    2 GKPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKKERPRS 143
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BLAST of 40S ribosomal protein S23 vs. Ensembl Nematostella
Match: EDO39200 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RFJ1])

HSP 1 Score: 250.366 bits (638), Expect = 2.482e-86
Identity = 120/142 (84.51%), Postives = 131/142 (92.25%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GKP G+RT RKLR HR+ ++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLN+IEENDEVL+SGFGR GHAVGDIPGVRFK+VKV +VSLLAL+K KKERPR+
Sbjct:    2 GKPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKKERPRS 143
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Medaka
Match: rps23 (ribosomal protein S23 [Source:NCBI gene;Acc:101162362])

HSP 1 Score: 251.906 bits (642), Expect = 1.991e-86
Identity = 122/142 (85.92%), Postives = 132/142 (92.96%), Query Frame = 3 
Query:  117 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            GK  G+RT RKLR HR++++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV +VSLLALYKGKKERPR+
Sbjct:    9 GKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 150
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Medaka
Match: ENSORLT00000029871.1 (pep primary_assembly:ASM223467v1:5:32718210:32719106:1 gene:ENSORLG00000022020.1 transcript:ENSORLT00000029871.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 80.8777 bits (198), Expect = 1.745e-19
Identity = 41/112 (36.61%), Postives = 67/112 (59.82%), Query Frame = -2 
Query:  177 QK*NAANFDNLESDTGNITDGVSRSTESRY*NF--IVFFNEVQATIVRYESGDFFTIFNQLNSDTLSDSRVRLFGFNTNLFQYNTLSVRSSTERIRFESST*MGFFVILICP 506
            Q+ +  +FD+LE+++GN+   V+ S E+ + N    V+ +EV+ATIV  E  D   +F++LNS TL D RV L   N++  Q + L VRSS+E +  +    +G  V+ + P
Sbjct:    4 QQRHVGHFDHLETNSGNVPHSVTLSPETGHQNLQTAVYLDEVEATIVWDEGCDLLAVFDELNSHTLPDGRVGL-DHNSHFLQDDALGVRSSSEGVGLQGGAQVGLLVLFVMP 114
[Close]
BLAST of 40S ribosomal protein S23 vs. Ensembl Medaka
Match: si:dkey-17e16.10 (mitochondrial ribosomal protein S12 [Source:NCBI gene;Acc:101159806])

HSP 1 Score: 54.299 bits (129), Expect = 2.410e-9
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 3 
Query:  240 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVK 485
            G    K +VL+ +  + K+PNSA RKC RV+L  NGK+   F+P +G  + ++E++ VLV G GR+     D+PGV+  +V+
Sbjct:   54 GRPQLKAVVLKTMIRKPKKPNSANRKCARVRL-SNGKEAVVFIPGEG--HNLQEHNVVLVQG-GRT----QDLPGVKLTVVR 127
[Close]
BLAST of 40S ribosomal protein S23 vs. Planmine SMEST
Match: SMESG000017264.1 (SMESG000017264.1)

HSP 1 Score: 293.123 bits (749), Expect = 4.919e-103
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 3 
Query:  108 MTRGKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 542
            MTRGKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA
Sbjct:    1 MTRGKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA 145
[Close]
BLAST of 40S ribosomal protein S23 vs. Planmine SMEST
Match: SMESG000015870.1 (SMESG000015870.1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.632e-12
Identity = 41/106 (38.68%), Postives = 67/106 (63.21%), Query Frame = 3 
Query:  177 WADKDYKKAHLGTRFKSNP---FGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVK 485
            +A  DY   +   R K +P     G    KGIVL+ +  + K+PNSA RKCVRV+L  NG+++TA++P +G  + ++E+++VL+ G GR    V D+ G++ K+V+
Sbjct:   14 FASMDYMAINGPFRKKRSPKFHMDGKPFMKGIVLKTLIRKPKKPNSANRKCVRVRL-SNGREVTAYIPGEG--HNLQEHNQVLIKG-GR----VQDLIGMKHKVVR 111
[Close]
BLAST of 40S ribosomal protein S23 vs. Planmine SMEST
Match: SMESG000015870.1 (SMESG000015870.1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.249e-12
Identity = 41/106 (38.68%), Postives = 67/106 (63.21%), Query Frame = 3 
Query:  177 WADKDYKKAHLGTRFKSNP---FGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVK 485
            +A  DY   +   R K +P     G    KGIVL+ +  + K+PNSA RKCVRV+L  NG+++TA++P +G  + ++E+++VL+ G GR    V D+ G++ K+V+
Sbjct:   23 FASMDYMAINGPFRKKRSPKFHMDGKPFMKGIVLKTLIRKPKKPNSANRKCVRVRL-SNGREVTAYIPGEG--HNLQEHNQVLIKG-GR----VQDLIGMKHKVVR 120
The following BLAST results are available for this feature:
BLAST of 40S ribosomal protein S23 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RPS232.602e-8685.92ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC... [more]
RPS232.602e-8685.92ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC... [more]
RPS232.931e-7286.67ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC... [more]
RPS232.931e-7286.67ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC... [more]
RPS232.323e-5381.00ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC... [more]
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BLAST of 40S ribosomal protein S23 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rps-231.050e-8785.2140S ribosomal protein S23 [Source:UniProtKB/Swiss... [more]
rps-231.050e-8785.2140S ribosomal protein S23 [Source:UniProtKB/Swiss... [more]
mrps-121.479e-745.16Mitochondrial Ribosomal Protein, Small [Source:Un... [more]
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BLAST of 40S ribosomal protein S23 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4
Match NameE-valueIdentityDescription
RpS233.126e-8585.21gene:FBgn0033912 transcript:FBtr0087575[more]
RpS233.126e-8585.21gene:FBgn0033912 transcript:FBtr0339970[more]
tko1.128e-1039.36gene:FBgn0003714 transcript:FBtr0070459[more]
tko1.611e-1039.36gene:FBgn0003714 transcript:FBtr0308831[more]
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BLAST of 40S ribosomal protein S23 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rps231.330e-8685.92ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-08... [more]
MRPS121.409e-735.37si:dkey-17e16.10 [Source:ZFIN;Acc:ZDB-GENE-091204-... [more]
MRPS121.409e-735.37si:dkey-17e16.10 [Source:ZFIN;Acc:ZDB-GENE-091204-... [more]
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BLAST of 40S ribosomal protein S23 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rps237.464e-8785.92ribosomal protein S23 [Source:NCBI gene;Acc:497003... [more]
rps238.257e-8785.92ribosomal protein S23 [Source:NCBI gene;Acc:497003... [more]
clic32.111e-1143.18chloride intracellular channel 3 [Source:Xenbase;A... [more]
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BLAST of 40S ribosomal protein S23 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rps231.786e-8685.92ribosomal protein S23 [Source:MGI Symbol;Acc:MGI:1... [more]
C330021F23Rik7.548e-2640.54RIKEN cDNA C330021F23 gene [Source:MGI Symbol;Acc:... [more]
C330021F23Rik7.548e-2640.54RIKEN cDNA C330021F23 gene [Source:MGI Symbol;Acc:... [more]
Gm21744.152e-2238.39predicted gene 2174 [Source:MGI Symbol;Acc:MGI:378... [more]
C330021F23Rik6.275e-2141.86RIKEN cDNA C330021F23 gene [Source:MGI Symbol;Acc:... [more]
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BLAST of 40S ribosomal protein S23 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9GRJ3|RS23_LUMRU9.733e-8887.3240S ribosomal protein S23 OS=Lumbricus rubellus OX... [more]
sp|Q19877|RS23_CAEEL1.336e-8685.2140S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
sp|Q86FP7|RS23_DERVA3.662e-8685.9240S ribosomal protein S23 OS=Dermacentor variabili... [more]
sp|Q90YQ1|RS23_ICTPU1.037e-8585.9240S ribosomal protein S23 OS=Ictalurus punctatus O... [more]
sp|P90707|RS23_BRUMA1.145e-8585.2140S ribosomal protein S23 OS=Brugia malayi OX=6279... [more]
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BLAST of 40S ribosomal protein S23 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A9UDQ22.346e-8789.44Putative 40S ribosomal protein RPS23 OS=Flustra fo... [more]
A0A3P7NVW79.354e-8784.14Uncharacterized protein OS=Dibothriocephalus latus... [more]
A8UAH02.616e-8689.36Putative ribosomal protein S23 OS=Barentsia elonga... [more]
A0A0X3NYN13.055e-8683.4540S ribosomal protein S23 OS=Schistocephalus solid... [more]
A0A0K0D9X13.187e-8687.32Uncharacterized protein OS=Angiostrongylus cantone... [more]
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BLAST of 40S ribosomal protein S23 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
rps231.432e-8585.21ribosomal protein S23 [Source:NCBI gene;Acc:103037... [more]
rps237.405e-8586.23ribosomal protein S23 [Source:NCBI gene;Acc:103037... [more]
ENSAMXT00000034582.11.092e-1034.88pep primary_assembly:Astyanax_mexicanus-2.0:22:339... [more]
si:dkey-17e16.102.753e-1043.68mitochondrial ribosomal protein S12 [Source:NCBI g... [more]
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BLAST of 40S ribosomal protein S23 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSPMAT00000008512.11.047e-8584.51pep scaffold:Pmarinus_7.0:GL478955:23541:27588:-1 ... [more]
si:dkey-17e16.104.444e-1040.24mitochondrial ribosomal protein S12 [Source:HGNC S... [more]
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BLAST of 40S ribosomal protein S23 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 3
Match NameE-valueIdentityDescription
RPS23A4.502e-7974.48Ribosomal protein 28 (rp28) of the small (40S) rib... [more]
RPS23B4.502e-7974.48Ribosomal protein 28 (rp28) of the small (40S) rib... [more]
MRPS121.593e-737.66Mitochondrial protein; may interact with ribosomes... [more]
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BLAST of 40S ribosomal protein S23 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO497312.482e-8684.51Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO392002.482e-8684.51Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of 40S ribosomal protein S23 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rps231.991e-8685.92ribosomal protein S23 [Source:NCBI gene;Acc:101162... [more]
ENSORLT00000029871.11.745e-1936.61pep primary_assembly:ASM223467v1:5:32718210:327191... [more]
si:dkey-17e16.102.410e-940.24mitochondrial ribosomal protein S12 [Source:NCBI g... [more]
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BLAST of 40S ribosomal protein S23 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000017264.14.919e-103100.00SMESG000017264.1[more]
SMESG000015870.14.632e-1238.68SMESG000015870.1[more]
SMESG000015870.16.249e-1238.68SMESG000015870.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30001096 ID=SMED30001096|Name=40S ribosomal protein S23|organism=Schmidtea mediterranea sexual|type=transcript|length=582bp
TTTAATTTTAAAAACGCAAATTATGATAAATACCATTAAATTTGTTTAAA
TTTTTGGTTATATTCAAATTATAATAATTTAAAACCTTATTTCTTCAATA
TATAATCATGACTAGAGGTAAACCAAGTGGTATTCGTACTGGACGTAAAT
TACGTCTTCACCGTAAAAAGGAACGTTGGGCAGATAAGGATTACAAAAAA
GCCCATTTAGGTACTAGATTCAAATCTAATCCTTTCGGTGGAGCTTCTCA
CGCTAAGGGTATTGTATTGGAAAAGGTTGGTGTTGAAGCCAAACAACCTA
ACTCTGCTATCAGAAAGTGTGTCAGAGTTCAATTGATTAAAAATGGTAAA
AAAATCACCGCTTTCGTACCTAACGATGGTTGCTTGAACTTCATTGAAGA
AAACGATGAAGTTTTAGTATCTGGATTCGGTCGATCTGGACACGCCGTCG
GTGATATTCCCGGTGTCCGATTCAAGATTGTCAAAGTTGGCAGCGTTTCA
CTTTTGGCTTTATACAAAGGAAAGAAAGAAAGGCCACGTGCTTAATTTTT
TAAATATATTTGGATACTAAAAAAAGATCGGA
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protein sequence of SMED30001096-orf-1

>SMED30001096-orf-1 ID=SMED30001096-orf-1|Name=SMED30001096-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=146bp
MTRGKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAK
GIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEEND
EVLVSGFGRSGHAVGDIPGVRFKIVKVGSVSLLALYKGKKERPRA*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: biological process
TermDefinition
GO:0002181cytoplasmic translation
GO:0006412translation
Vocabulary: cellular component
TermDefinition
GO:0005737cytoplasm
GO:0005783endoplasmic reticulum
GO:0005791rough endoplasmic reticulum
GO:0005829cytosol
GO:0022627cytosolic small ribosomal subunit
GO:0042788polysomal ribosome
GO:0005622intracellular
GO:0005840ribosome
GO:0015935small ribosomal subunit
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000026gut
PLANA:0000039gamma neoblast
PLANA:0000101muscle cell
PLANA:0000429neoblast
PLANA:0002032epidermal cell
PLANA:0002109X1 cell
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR005680Ribosomal_S23_euk/arc
IPR012340NA-bd_OB-fold
IPR006032Ribosomal_S12/S23
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 32..144
e-value: 1.2E-51
score: 173.2
IPR006032Ribosomal protein S12/S23PIRSFPIRSF002133RPS12p_RPS12a_RPS23e_RPS12ocoord: 18..145
e-value: 7.4E-35
score: 116.8
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 4..144
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 62..69
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 27..145
e-value: 5.3E-67
score: 224.7
NoneNo IPR availablePANTHERPTHR11652:SF1440S RIBOSOMAL PROTEIN S23coord: 4..144
IPR005680Ribosomal protein S23, eukaryotic/archaealTIGRFAMTIGR00982TIGR00982coord: 10..144
e-value: 8.4E-57
score: 188.8
IPR005680Ribosomal protein S23, eukaryotic/archaealCDDcd03367Ribosomal_S23coord: 28..142
e-value: 3.74499E-79
score: 227.537
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 23..143