PSDC domain-containing protein

Overview
NamePSDC domain-containing protein
Smed IDSMED30001079
Length (bp)468
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of PSDC domain-containing protein (SMED30001079) t-SNE clustered cells

Violin plots show distribution of expression levels for PSDC domain-containing protein (SMED30001079) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of PSDC domain-containing protein (SMED30001079) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for PSDC domain-containing protein (SMED30001079) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30001079

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parapharyngeal regionSMED30001079 SmedASXL_066971SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30001079 dd_Smed_v4_5455_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30001079 dd_Smed_v4_5455_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30001079 dd_Smed_v6_5455_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
head regionSMED30001079 OX_Smed_1.0.03084ox_Smed_v2PMID:24238224
Kao et al., 2013		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Human
Match: PLAC8 (placenta associated 8 [Source:HGNC Symbol;Acc:HGNC:19254])

HSP 1 Score: 43.8986 bits (102), Expect = 9.479e-6
Identity = 29/98 (29.59%), Postives = 45/98 (45.92%), Query Frame = 2 
Query:  134 KMSDWQQGICGCFGDLGTCVLAYFA-PCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKH 424
            + S+WQ G+C CF D G C+   F  PC  +G         C LC  +           +R   R++  IPG  C+D + +L  P CT+ Q+  ++  
Sbjct:   22 QNSNWQTGMCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTSV---------AMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINR 108
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Human
Match: PLAC8 (placenta associated 8 [Source:HGNC Symbol;Acc:HGNC:19254])

HSP 1 Score: 43.8986 bits (102), Expect = 9.479e-6
Identity = 29/98 (29.59%), Postives = 45/98 (45.92%), Query Frame = 2 
Query:  134 KMSDWQQGICGCFGDLGTCVLAYFA-PCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKH 424
            + S+WQ G+C CF D G C+   F  PC  +G         C LC  +           +R   R++  IPG  C+D + +L  P CT+ Q+  ++  
Sbjct:   22 QNSNWQTGMCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTSV---------AMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINR 108
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Human
Match: PLAC8 (placenta associated 8 [Source:HGNC Symbol;Acc:HGNC:19254])

HSP 1 Score: 43.8986 bits (102), Expect = 9.479e-6
Identity = 29/98 (29.59%), Postives = 45/98 (45.92%), Query Frame = 2 
Query:  134 KMSDWQQGICGCFGDLGTCVLAYFA-PCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKH 424
            + S+WQ G+C CF D G C+   F  PC  +G         C LC  +           +R   R++  IPG  C+D + +L  P CT+ Q+  ++  
Sbjct:   22 QNSNWQTGMCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTSV---------AMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINR 108
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Human
Match: PLAC8 (placenta associated 8 [Source:HGNC Symbol;Acc:HGNC:19254])

HSP 1 Score: 43.8986 bits (102), Expect = 9.479e-6
Identity = 29/98 (29.59%), Postives = 45/98 (45.92%), Query Frame = 2 
Query:  134 KMSDWQQGICGCFGDLGTCVLAYFA-PCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKH 424
            + S+WQ G+C CF D G C+   F  PC  +G         C LC  +           +R   R++  IPG  C+D + +L  P CT+ Q+  ++  
Sbjct:   22 QNSNWQTGMCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTSV---------AMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINR 108
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Zebrafish
Match: ponzr10 (plac8 onzin related protein 10 [Source:ZFIN;Acc:ZDB-GENE-081107-68])

HSP 1 Score: 51.9878 bits (123), Expect = 1.447e-8
Identity = 35/103 (33.98%), Postives = 46/103 (44.66%), Query Frame = 2 
Query:  146 WQQGICGCFGDLGTCVLAYFA-PCYLVGLDAETVDKNC----------VLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVK 421
            W  GIC CF DL +C  AY+  PC+      E  +  C          V+      F  P +T  +R  +R K NI G  CND  VS     C+  QM+ E+K
Sbjct:   18 WNSGICDCFQDLNSCCYAYWCCPCFACSTAGEFGESTCLPLVDILGPAVMASFGVAFCVPPVTMSLRVAIRHKYNIRGSICNDIAVSCCCVMCSWCQMNREIK 120
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Zebrafish
Match: BX005027.2 (plac8 onzin related protein 10 [Source:NCBI gene;Acc:100001900])

HSP 1 Score: 51.9878 bits (123), Expect = 1.679e-8
Identity = 35/103 (33.98%), Postives = 46/103 (44.66%), Query Frame = 2 
Query:  146 WQQGICGCFGDLGTCVLAYFA-PCYLVGLDAETVDKNC----------VLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVK 421
            W  GIC CF DL +C  AY+  PC+      E  +  C          V+      F  P +T  +R  +R K NI G  CND  VS     C+  QM+ E+K
Sbjct:   20 WNSGICDCFQDLNSCCYAYWCCPCFACSTAGEFGESTCLPLVDILGPAVMASFGVAFCVPPVTMSLRVAIRHKYNIRGSICNDIAVSCCCVMCSWCQMNREIK 122
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Mouse
Match: Plac8 (placenta-specific 8 [Source:MGI Symbol;Acc:MGI:2445289])

HSP 1 Score: 47.7506 bits (112), Expect = 2.133e-7
Identity = 30/98 (30.61%), Postives = 46/98 (46.94%), Query Frame = 2 
Query:  134 KMSDWQQGICGCFGDLGTCVLAYFAPCYL-VGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKH 424
            + S+WQ  +C CF D G C+   F  C+  +G         C LC           T  +R   R++  IPG  C+D +V+LF P C+V Q+  ++  
Sbjct:   19 QNSNWQTSLCDCFSDCGVCLCGTF--CFTCLGCQVAADMNECCLCGT---------TVAMRTLYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDINR 105
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Mouse
Match: Plac8 (placenta-specific 8 [Source:MGI Symbol;Acc:MGI:2445289])

HSP 1 Score: 47.7506 bits (112), Expect = 2.133e-7
Identity = 30/98 (30.61%), Postives = 46/98 (46.94%), Query Frame = 2 
Query:  134 KMSDWQQGICGCFGDLGTCVLAYFAPCYL-VGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKH 424
            + S+WQ  +C CF D G C+   F  C+  +G         C LC           T  +R   R++  IPG  C+D +V+LF P C+V Q+  ++  
Sbjct:   19 QNSNWQTSLCDCFSDCGVCLCGTF--CFTCLGCQVAADMNECCLCGT---------TVAMRTLYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDINR 105
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Mouse
Match: Plac8 (placenta-specific 8 [Source:MGI Symbol;Acc:MGI:2445289])

HSP 1 Score: 47.7506 bits (112), Expect = 2.133e-7
Identity = 30/98 (30.61%), Postives = 46/98 (46.94%), Query Frame = 2 
Query:  134 KMSDWQQGICGCFGDLGTCVLAYFAPCYL-VGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKH 424
            + S+WQ  +C CF D G C+   F  C+  +G         C LC           T  +R   R++  IPG  C+D +V+LF P C+V Q+  ++  
Sbjct:   19 QNSNWQTSLCDCFSDCGVCLCGTF--CFTCLGCQVAADMNECCLCGT---------TVAMRTLYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDINR 105
[Close]
BLAST of PSDC domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9LQU4|PCR2_ARATH (Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis thaliana OX=3702 GN=PCR2 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.445e-12
Identity = 38/119 (31.93%), Postives = 55/119 (46.22%), Query Frame = 2 
Query:  143 DWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFP--------PCI-TCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMS-----GTAMALERE 457
            +W  G C CF D   C + ++ PC   G  AE VD+    C  A   +          CI +C  RGK+R++ NI G  C DC+       C++ Q + E+KH       G A  +ER+
Sbjct:   15 EWSTGFCDCFSDCKNCCITFWCPCITFGQVAEIVDRGSTSCGTAGALYALIAVVTGCACIYSCFYRGKMRAQYNIKGDDCTDCLKHFCCELCSLTQQYRELKHRGYDMSLGWAGNVERQ 133
[Close]
BLAST of PSDC domain-containing protein vs. UniProt/SwissProt
Match: sp|D9HP20|CNR4_MAIZE (Cell number regulator 4 OS=Zea mays OX=4577 GN=CNR4 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.092e-10
Identity = 38/118 (32.20%), Postives = 59/118 (50.00%), Query Frame = 2 
Query:  143 DWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCI----------AFLFFPPC---ITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSGTAMALERE 457
            +W  G+CGCF D  +C L++  PC   G  AE +DK    C +          A +   PC    TC  R K+R+  ++P   C DC V ++   C ++QM+ E+K+  G   A+ R+
Sbjct:   10 EWTTGLCGCFSDCKSCCLSFLCPCIPFGQVAEVLDKGMTSCGLAGLLYCLLLHAGVAVVPCHCIYTCTYRRKLRAAYDLPPEPCADCCVHMWCGPCAISQMYRELKN-RGADPAMGRQ 126
[Close]
BLAST of PSDC domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8S8T8|PCR10_ARATH (Protein PLANT CADMIUM RESISTANCE 10 OS=Arabidopsis thaliana OX=3702 GN=PCR10 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 7.664e-10
Identity = 36/132 (27.27%), Postives = 54/132 (40.91%), Query Frame = 2 
Query:  143 DWQQGICGCFGDLGTCVLAYFAPCYLVGLDAE-----TVDKNCVLCCIAFLF-------------------FPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSGTAMALERE*GI 466
             W  GIC CF D+ +C +  F PCY+ G +AE     T    C+  CI++                     F  C  C  R  +R+K N+    C D V   F   C + Q + E++  S  +  L+ +  I
Sbjct:   46 QWSSGICACFDDMQSCCVGLFCPCYIFGKNAELLGSGTFAGPCLTHCISWALVNTICCFATNGALLGLPGCFVSCYACGYRKSLRAKYNLQEAPCGDFVTHFFCHLCAICQEYREIREQSSGSYPLDMKMAI 177
[Close]
BLAST of PSDC domain-containing protein vs. UniProt/SwissProt
Match: sp|P0CW97|PCR3_ARATH (Protein PLANT CADMIUM RESISTANCE 3 OS=Arabidopsis thaliana OX=3702 GN=PCR3 PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 3.049e-9
Identity = 32/104 (30.77%), Postives = 47/104 (45.19%), Query Frame = 2 
Query:  140 SDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFP--------PCI-TCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKH 424
             +W  G C CF D   C + +  PC   G  A+ VD+    C  A   +          C+ +C  RGK+R++ NI G  C DC+       C + Q + E+KH
Sbjct:   14 GEWSTGFCDCFSDCQNCCITWLCPCITFGQVADIVDRGNTSCGTAGALYVLLAAITGCGCLYSCIYRGKIRAQYNIRGDGCTDCLKHFCCELCALTQEYRELKH 117
[Close]
BLAST of PSDC domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9LQU2|PCR1_ARATH (Protein PLANT CADMIUM RESISTANCE 1 OS=Arabidopsis thaliana OX=3702 GN=PCR1 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 4.543e-9
Identity = 32/105 (30.48%), Postives = 43/105 (40.95%), Query Frame = 2 
Query:  137 MSDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFF---------PPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKH 424
              +W  G C CF D   C +    PC   G  AE VD+    CC A   +              C   GK+R++ NI G  C DC+       C + Q + E+KH
Sbjct:   12 QGEWSTGFCDCFSDCRNCCITLCCPCITFGQVAEIVDRGSKSCCAAGALYMLIDLITSCGRMYACFYSGKMRAQYNIKGDGCTDCLKHFCCNLCALTQQYRELKH 116
[Close]
BLAST of PSDC domain-containing protein vs. TrEMBL
Match: A0A267F6N5 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig018526g1 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.541e-26
Identity = 50/107 (46.73%), Postives = 65/107 (60.75%), Query Frame = 2 
Query:  137 MSDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSGTAMALERE 457
            M+D++ G+CGCF D G C++ YF PCY  G +AE V  +CVLC +AFLF  PC+   +RGK+R K+ I G    D  V L  P C + Q   EVK MS     +ERE
Sbjct:    1 MADFKHGLCGCFDDCGLCIITYFVPCYTFGKNAEAVGDSCVLCGLAFLFVSPCVGAIVRGKIREKQGINGSFIGDFFVHLCCPLCALVQDAQEVKEMSPGGQVVERE 107
[Close]
BLAST of PSDC domain-containing protein vs. TrEMBL
Match: A0A1I8GZL5 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig033858g1 PE=4 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.331e-25
Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = 2 
Query:  137 MSDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHM-SGTAMALERE 457
            MS ++ G+CGCF D G C++AYF PCY  G  AE V  +CVLC I +LF  PC+   IRGKVR K+ I GG   D    L  P C + Q   EVK M   +A +LERE
Sbjct:    1 MSQYRHGLCGCFDDCGICIVAYFLPCYTHGKTAEAVGDSCVLCAIGYLFVAPCVGAVIRGKVRDKQGIAGGFVGDFFTYLCCPLCALVQDAQEVKDMVPPSAQSLERE 108
[Close]
BLAST of PSDC domain-containing protein vs. TrEMBL
Match: A0A267G1B3 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig011077g1 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.454e-24
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 2 
Query:  137 MSDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSGTAMALERE 457
            MS ++ G+CGCF D G  ++ YF PCY  G +AE V  +C LC  A+LF P  + C +RGK+R K++IPGG C+D +   F   C + Q   EVKH++    A+ERE
Sbjct:    1 MSSFRHGLCGCFDDCGVALITYFCPCYAFGKNAEAVGDSCCLCGCAYLFCPIILGCIMRGKLREKQDIPGGCCSDLLTHFFCHMCALCQEGQEVKHITLNTQAMERE 107
[Close]
BLAST of PSDC domain-containing protein vs. TrEMBL
Match: A0A1I8JBM9 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig001673g1 PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.464e-24
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = 2 
Query:  140 SDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSGTAMALERE 457
            + ++ G+CGCF D G C++ Y  PCY  G +AE V ++C+LC I +LF  PC+   +RGK+R K+ IPG   +D +  L  P C + Q   EVK M+    A+ERE
Sbjct:    3 NQFKHGLCGCFDDFGLCIVTYLVPCYTFGKNAEAVQESCLLCGIGYLFVSPCLGAIVRGKIREKQGIPGRFVSDLLAHLCCPLCALMQDAQEVKAMAPAGSAVERE 108
[Close]
BLAST of PSDC domain-containing protein vs. TrEMBL
Match: A0A1I8H2V8 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-23
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = 2 
Query:  140 SDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSGTAMALERE 457
            + ++ G+CGCF D G C++ Y  PCY  G +AE V ++C+LC I +LF  PC+   +RGK+R K+ IPG   +D +  L  P C + Q   EVK M+    A+ERE
Sbjct:   65 NQFKHGLCGCFDDFGLCIVTYLVPCYTFGKNAEAVQESCLLCGIGYLFVSPCLGAIVRGKIREKQGIPGRFVSDLLAHLCCPLCALMQDAQEVKAMAPAGSAVERE 170
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Cavefish
Match: ponzr5 (cornifelin homolog B-like [Source:NCBI gene;Acc:103036465])

HSP 1 Score: 48.9062 bits (115), Expect = 7.983e-8
Identity = 32/96 (33.33%), Postives = 45/96 (46.88%), Query Frame = 2 
Query:  140 SDWQQGICGCFGDLGTCVLAYF-APCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKH 424
            + W  GIC C  ++  C   ++  PC+      +  +  C L  + F F PP IT  +R  +R +  I G  CNDCV S F   C   QM  E+K 
Sbjct:   19 NQWGSGICDCGENIAECCFGFWCLPCFACSTSKKFGECLC-LPLLEFGFIPP-ITLAMRSSMRQRYGIEGSICNDCVYSFFCCPCVWCQMSREMKK 112
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Cavefish
Match: ponzr5 (cornifelin homolog B-like [Source:NCBI gene;Acc:103036465])

HSP 1 Score: 48.9062 bits (115), Expect = 7.983e-8
Identity = 32/96 (33.33%), Postives = 45/96 (46.88%), Query Frame = 2 
Query:  140 SDWQQGICGCFGDLGTCVLAYF-APCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKH 424
            + W  GIC C  ++  C   ++  PC+      +  +  C L  + F F PP IT  +R  +R +  I G  CNDCV S F   C   QM  E+K 
Sbjct:   19 NQWGSGICDCGENIAECCFGFWCLPCFACSTSKKFGECLC-LPLLEFGFIPP-ITLAMRSSMRQRYGIEGSICNDCVYSFFCCPCVWCQMSREMKK 112
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Cavefish
Match: ponzr6 (cornifelin homolog [Source:NCBI gene;Acc:103028345])

HSP 1 Score: 45.0542 bits (105), Expect = 2.163e-6
Identity = 29/101 (28.71%), Postives = 48/101 (47.52%), Query Frame = 2 
Query:  128 NFKMSDWQQGICGCFGDLGTCVLAYFAP-CYLVGLDAETVDKNCV-LCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKH 424
            N ++  W  GIC C  D+G C   ++ P C +     +  +  C+ L  + F    P +T  +R  +R + +I G  C+DC VS     C   Q+  E+K+
Sbjct:   18 NQRIVQWSSGICDCCEDMGICCFGFWCPYCLMCNTTKKYGECMCLPLVELCFGGLIPPVTYSMRSSMRERYHIQGSMCDDCCVSTCCGICAWCQIARELKY 118
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Cavefish
Match: ponzr6 (cornifelin homolog [Source:NCBI gene;Acc:103028345])

HSP 1 Score: 45.0542 bits (105), Expect = 2.459e-6
Identity = 29/101 (28.71%), Postives = 48/101 (47.52%), Query Frame = 2 
Query:  128 NFKMSDWQQGICGCFGDLGTCVLAYFAP-CYLVGLDAETVDKNCV-LCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKH 424
            N ++  W  GIC C  D+G C   ++ P C +     +  +  C+ L  + F    P +T  +R  +R + +I G  C+DC VS     C   Q+  E+K+
Sbjct:   18 NQRIVQWSSGICDCCEDMGICCFGFWCPYCLMCNTTKKYGECMCLPLVELCFGGLIPPVTYSMRSSMRERYHIQGSMCDDCCVSTCCGICAWCQIARELKY 118
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Cavefish
Match: ponzr6 (cornifelin homolog [Source:NCBI gene;Acc:103028345])

HSP 1 Score: 44.2838 bits (103), Expect = 6.489e-6
Identity = 29/101 (28.71%), Postives = 48/101 (47.52%), Query Frame = 2 
Query:  128 NFKMSDWQQGICGCFGDLGTCVLAYFAP-CYLVGLDAETVDKNCV-LCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKH 424
            N ++  W  GIC C  D+G C   ++ P C +     +  +  C+ L  + F    P +T  +R  +R + +I G  C+DC VS     C   Q+  E+K+
Sbjct:   18 NQRIVQWSSGICDCCEDMGICCFGFWCPYCLMCNTTKKYGECMCLPLVELCFGGLIPPVTYSMRSSMRERYHIQGSMCDDCCVSTCCGICAWCQIARELKY 118
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Nematostella
Match: EDO50068 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RFB0])

HSP 1 Score: 79.7221 bits (195), Expect = 2.841e-20
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 2 
Query:  140 SDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPC---ITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSGT 436
            +DW  G+ GCF D GTC++ Y APCY  G +AE V  +C+LC +AF F P     +   +RGK+R +  I G    DC  ++  P C++ Q   +VK   G+
Sbjct:    3 NDWNNGLFGCFNDCGTCLITYIAPCYTFGKNAEAVGDSCLLCGLAF-FVPVVDLIVMSSVRGKIREQHGISGSFIGDCAATICCPFCSLVQSAQQVKGAPGS 103
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Nematostella
Match: EDO44794 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUR8])

HSP 1 Score: 78.9518 bits (193), Expect = 6.420e-20
Identity = 46/107 (42.99%), Postives = 56/107 (52.34%), Query Frame = 2 
Query:  143 DWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPCI----TCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHM--SGTAMA 445
             W  GICGCF D+ TC L YF PC + G +AE V +NC L    FL    C+       IR K+R K  I G   NDC++  F P C  +Q   E+K    SG AMA
Sbjct:    2 SWSSGICGCFEDINTCALTYFCPCVVAGKNAEAVGENCFL--HGFLSTLGCVGIFCGAKIREKIREKHGIEGSFGNDCIMHWFCPLCAYSQEARELKARCPSGQAMA 106
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Nematostella
Match: EDO36116 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJK5])

HSP 1 Score: 58.9214 bits (141), Expect = 3.136e-12
Identity = 37/109 (33.94%), Postives = 55/109 (50.46%), Query Frame = 2 
Query:  137 MSDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPC----ITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHE--VKHMSGTAMA 445
            M  +  G+ GCF D+  C+  Y  PCY  G  AE V ++C++C I  +   PC        IRGKVR ++ I G   ND +++     C++ Q   E  VK   G ++A
Sbjct:    1 MGQFSNGLFGCFSDIPLCLTTYCVPCYTFGKTAEAVGEDCLMCGIVLMV--PCANIWFATQIRGKVREQKGIEGSFVNDLLMTWCCGFCSIIQEALEMGVKAPIGNSIA 107
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Nematostella
Match: EDO42612 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S0W1])

HSP 1 Score: 58.5362 bits (140), Expect = 1.117e-11
Identity = 33/95 (34.74%), Postives = 51/95 (53.68%), Query Frame = 2 
Query:  143 DWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHM 427
            DW  G+CGCF D+G+C+L YF PC+L+   ++ + + C   C             +R K+R ++NI G   ND      LP C + Q+  E+KH+
Sbjct:   53 DWHSGMCGCFDDIGSCLLGYFCPCFLLIDVSQRMGEGCCFPCCCPGALVG-----LRVKLRVEQNIQGSLINDYCAVQCLPLCVLCQLSRELKHL 142
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Nematostella
Match: EDO42647 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S0V8])

HSP 1 Score: 44.2838 bits (103), Expect = 1.505e-6
Identity = 26/100 (26.00%), Postives = 46/100 (46.00%), Query Frame = 2 
Query:  134 KMSDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVL--CCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHM 427
            +  DW  G+  C  D+G C++ +  PC  +   ++ + +      CC     F       +R K+R+++NI G  CND +       C + QM  E+ H+
Sbjct:   26 QQRDWSSGLFECTKDIGGCLVTFLCPCVTLCQISQRMGEGLAYGCCCADIAAFT------LRAKLRTEQNIQGSLCNDAIHVSCCMHCALCQMSRELDHV 119
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Medaka
Match: ponzr1 (cornifelin homolog B [Source:NCBI gene;Acc:110017082])

HSP 1 Score: 54.6842 bits (130), Expect = 8.064e-10
Identity = 34/102 (33.33%), Postives = 49/102 (48.04%), Query Frame = 2 
Query:  146 WQQGICGCFGDLGTCVLAYFA-PCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSGTAMAL 448
            W  G+C C  D+GTC  A +  PC    +  +T  K+   C +  L     +TC +R  +R + +IPG   +DC   +F   C   QMH EVK  S    A+
Sbjct:   40 WSTGMCECCADVGTCCCAMWCFPC----MQCQTAQKHGWCCAMPLLDICGVVTCLLRSSIRERHHIPGSCIDDCCKCMFCYPCVWCQMHREVKVRSNAGSAV 137
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Medaka
Match: ponzr3 (cornifelin homolog A [Source:NCBI gene;Acc:101160195])

HSP 1 Score: 51.2174 bits (121), Expect = 1.277e-8
Identity = 32/95 (33.68%), Postives = 47/95 (49.47%), Query Frame = 2 
Query:  140 SDWQQGICGCFGDLGTCVLAYFA-PCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVK 421
            ++W  GIC CF DL +C  A++  PC+      +  +  C+     F   PP IT  +R  +R +  I G  C DCV S F   C+  Q+  E+K
Sbjct:   20 NEWSSGICDCFDDLRSCCFAFWCFPCFACITSKKAGECLCLPLLDGFGCIPP-ITTAMRVSIRKQYGIEGTICRDCVFSFFCGPCSWCQISREMK 113
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Medaka
Match: plac8.1 (placenta associated 8, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050809-124])

HSP 1 Score: 44.2838 bits (103), Expect = 2.365e-6
Identity = 18/39 (46.15%), Postives = 26/39 (66.67%), Query Frame = 2 
Query:  308 IRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKH 424
            IR   R++ NI G  CNDC++SLF P C+  Q+  ++KH
Sbjct:   51 IRSVYRTRYNIKGSMCNDCLMSLFCPVCSTCQLKRDIKH 89
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000034895.1 (pep primary_assembly:ASM223467v1:4:15636819:15639612:-1 gene:ENSORLG00000022609.1 transcript:ENSORLT00000034895.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 45.0542 bits (105), Expect = 3.467e-6
Identity = 31/99 (31.31%), Postives = 45/99 (45.45%), Query Frame = 2 
Query:  137 MSDWQQGICGCFGDLGTCVLAYF-APCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMS 430
            + +W  G+C CF D  TC   ++  PC    +  +  +  C+  C  F     C T   R  +R++  I G  C D VVS     C+  QMH E+KH  
Sbjct:   33 LVEWNTGLCDCFEDAATCCYGFWCGPCLACSVSGKFGEFYCLPLCDYF-----CQTFSTRSSMRNRYGIKGSLCKDLVVSCCCVWCSWCQMHRELKHQK 126
[Close]
BLAST of PSDC domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000028572.1 (cornifelin homolog [Source:NCBI gene;Acc:101172524])

HSP 1 Score: 44.2838 bits (103), Expect = 4.068e-6
Identity = 28/102 (27.45%), Postives = 43/102 (42.16%), Query Frame = 2 
Query:  128 NFKMSDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSG 433
            N +  +W  G+C CF D   C L +F P  L    A    +N  L C+      P     +R  +R    I G  CND ++      C + +M  E++  +G
Sbjct:   18 NVQTGEWSTGLCSCFNDCLICALGFFCPAGLSCYTAHKYGENFCLGCV------PGGMTAMRTHMRLTYGIQGTVCNDAIMVFCCGLCEMCRMAREIRIRNG 113
[Close]
BLAST of PSDC domain-containing protein vs. Planmine SMEST
Match: SMESG000023831.1 (SMESG000023831.1)

HSP 1 Score: 223.016 bits (567), Expect = 2.208e-76
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 2 
Query:  137 MSDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSGTAMALERE 457
            MSDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSGTAMALERE
Sbjct:    1 MSDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSGTAMALERE 107
[Close]
BLAST of PSDC domain-containing protein vs. Planmine SMEST
Match: SMESG000023836.1 (SMESG000023836.1)

HSP 1 Score: 169.474 bits (428), Expect = 3.128e-55
Identity = 74/107 (69.16%), Postives = 90/107 (84.11%), Query Frame = 2 
Query:  137 MSDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSGTAMALERE 457
            MS+WQQGICGCFGD+GTC+L+YF PCYL+GLDAE VD +C+LC +  +FFPPCI C++RGK+R K+NI GG C DC+ S FL CC VAQMHHEVKHM G A++LERE
Sbjct:    1 MSEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVISIFFPPCIICYVRGKIREKQNIDGGCCTDCLCSFFLGCCAVAQMHHEVKHMQGNAISLERE 107
[Close]
BLAST of PSDC domain-containing protein vs. Planmine SMEST
Match: SMESG000023846.1 (SMESG000023846.1)

HSP 1 Score: 120.553 bits (301), Expect = 6.873e-36
Identity = 56/107 (52.34%), Postives = 72/107 (67.29%), Query Frame = 2 
Query:  137 MSDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSGTAMALERE 457
            M++WQ G+CGCF D GTC+L+YF PCYLVG DAE V  +C LC + +L    C+   +R KVR KR I G  C D V S + PCC+VAQ H EV  M+  AM++ER+
Sbjct:    1 MAEWQHGLCGCFSDCGTCLLSYFVPCYLVGKDAEAVGDSCFLCGLGYLVIYGCVGAIVRKKVREKRGISGNFCFDLVASCWCPCCSVAQTHQEVLAMNAAAMSIERD 107
[Close]
BLAST of PSDC domain-containing protein vs. Planmine SMEST
Match: SMESG000060403.1 (SMESG000060403.1)

HSP 1 Score: 100.908 bits (250), Expect = 4.422e-28
Identity = 50/109 (45.87%), Postives = 64/109 (58.72%), Query Frame = 2 
Query:  128 NFKMSDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPCITCH-IRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSGTAMALE 451
            ++   DWQ G+C CF D G C++A+F PCY VG+DAE V +NC LC  A L    C T   IR  +R ++ IPG  C D  V  + PCCT AQMH E    S  +M+ E
Sbjct:    5 DYHDYDWQHGLCSCFDDCGLCLVAFFCPCYTVGVDAEAVGENCCLCGFAVLTPAACFTVPLIRSYIRDRQKIPGSYCEDFCVFFWCPCCTTAQMHQETYEFSPHSMSRE 113
[Close]
BLAST of PSDC domain-containing protein vs. Planmine SMEST
Match: SMESG000023842.1 (SMESG000023842.1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.643e-27
Identity = 55/107 (51.40%), Postives = 69/107 (64.49%), Query Frame = 2 
Query:  137 MSDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSGTAMALERE 457
            M +W+ G+CGC  D GTC+L YF PCYL+G DAE V  +C LC    LF  PCI  ++R KVR +RNI G    D + +    CC VAQMH EV  M G++MA+ERE
Sbjct:    1 MGEWEHGLCGCCDDCGTCLLTYFVPCYLIGKDAEAVGDSCFLCGCGSLFAGPCIIAYVRSKVRDRRNITGSFIGDLLCAFCCGCCVVAQMHQEVIAMGGSSMAIERE 107
The following BLAST results are available for this feature:
BLAST of PSDC domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 4
Match NameE-valueIdentityDescription
PLAC89.479e-629.59placenta associated 8 [Source:HGNC Symbol;Acc:HGNC... [more]
PLAC89.479e-629.59placenta associated 8 [Source:HGNC Symbol;Acc:HGNC... [more]
PLAC89.479e-629.59placenta associated 8 [Source:HGNC Symbol;Acc:HGNC... [more]
PLAC89.479e-629.59placenta associated 8 [Source:HGNC Symbol;Acc:HGNC... [more]
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BLAST of PSDC domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PSDC domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PSDC domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ponzr101.447e-833.98plac8 onzin related protein 10 [Source:ZFIN;Acc:ZD... [more]
BX005027.21.679e-833.98plac8 onzin related protein 10 [Source:NCBI gene;A... [more]
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BLAST of PSDC domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PSDC domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Plac82.133e-730.61placenta-specific 8 [Source:MGI Symbol;Acc:MGI:244... [more]
Plac82.133e-730.61placenta-specific 8 [Source:MGI Symbol;Acc:MGI:244... [more]
Plac82.133e-730.61placenta-specific 8 [Source:MGI Symbol;Acc:MGI:244... [more]
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BLAST of PSDC domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9LQU4|PCR2_ARATH5.445e-1231.93Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis ... [more]
sp|D9HP20|CNR4_MAIZE1.092e-1032.20Cell number regulator 4 OS=Zea mays OX=4577 GN=CNR... [more]
sp|Q8S8T8|PCR10_ARATH7.664e-1027.27Protein PLANT CADMIUM RESISTANCE 10 OS=Arabidopsis... [more]
sp|P0CW97|PCR3_ARATH3.049e-930.77Protein PLANT CADMIUM RESISTANCE 3 OS=Arabidopsis ... [more]
sp|Q9LQU2|PCR1_ARATH4.543e-930.48Protein PLANT CADMIUM RESISTANCE 1 OS=Arabidopsis ... [more]
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BLAST of PSDC domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A267F6N55.541e-2646.73Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8GZL59.331e-2549.07Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267G1B33.454e-2444.86Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8JBM94.464e-2442.45Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8H2V81.619e-2342.45Uncharacterized protein OS=Macrostomum lignano OX=... [more]
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BLAST of PSDC domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ponzr57.983e-833.33cornifelin homolog B-like [Source:NCBI gene;Acc:10... [more]
ponzr57.983e-833.33cornifelin homolog B-like [Source:NCBI gene;Acc:10... [more]
ponzr62.163e-628.71cornifelin homolog [Source:NCBI gene;Acc:103028345... [more]
ponzr62.459e-628.71cornifelin homolog [Source:NCBI gene;Acc:103028345... [more]
ponzr66.489e-628.71cornifelin homolog [Source:NCBI gene;Acc:103028345... [more]
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BLAST of PSDC domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PSDC domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PSDC domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO500682.841e-2039.22Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO447946.420e-2042.99Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO361163.136e-1233.94Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO426121.117e-1134.74Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO426471.505e-626.00Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of PSDC domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ponzr18.064e-1033.33cornifelin homolog B [Source:NCBI gene;Acc:1100170... [more]
ponzr31.277e-833.68cornifelin homolog A [Source:NCBI gene;Acc:1011601... [more]
plac8.12.365e-646.15placenta associated 8, tandem duplicate 1 [Source:... [more]
ENSORLT00000034895.13.467e-631.31pep primary_assembly:ASM223467v1:4:15636819:156396... [more]
ENSORLT00000028572.14.068e-627.45cornifelin homolog [Source:NCBI gene;Acc:101172524... [more]
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BLAST of PSDC domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000023831.12.208e-76100.00SMESG000023831.1[more]
SMESG000023836.13.128e-5569.16SMESG000023836.1[more]
SMESG000023846.16.873e-3652.34SMESG000023846.1[more]
SMESG000060403.14.422e-2845.87SMESG000060403.1[more]
SMESG000023842.14.643e-2751.40SMESG000023842.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30001079 ID=SMED30001079|Name=PSDC domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=468bp
TGATTGTTAAAGCAAATGTCAAACTGACTCAAAGTGTGCTCCAGTTGTGA
TTTGACTAGCCAATGCATCTTAGAAAATCGTTTTTTGACATCTATAAAAA
TGAATTCAAATATAGTGTATGTCATAGAATTTCAAAATGTCTGATTGGCA
GCAAGGAATTTGTGGTTGCTTTGGTGATCTCGGAACATGTGTATTGGCTT
ACTTTGCACCGTGCTATTTAGTTGGTCTAGACGCAGAAACGGTGGATAAG
AATTGTGTGCTGTGTTGTATAGCCTTCTTATTCTTCCCTCCTTGTATAAC
ATGTCATATTCGAGGCAAAGTAAGAAGCAAGAGAAACATACCAGGAGGGT
CTTGTAATGACTGCGTGGTATCTCTTTTCTTACCTTGTTGTACTGTGGCT
CAAATGCATCACGAAGTGAAACATATGAGTGGAACTGCTATGGCGCTGGA
GCGAGAATAAGGCATTGT
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0004609phosphatidylserine decarboxylase activity
Vocabulary: biological process
TermDefinition
GO:0008654phospholipid biosynthetic process
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000418head
PLANA:0000420parapharyngeal region
Vocabulary: INTERPRO
TermDefinition
IPR006461PLAC_motif_containing
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006461PLAC8 motif-containing proteinTIGRFAMTIGR01571TIGR01571coord: 3..96
e-value: 1.5E-22
score: 78.3
IPR006461PLAC8 motif-containing proteinPFAMPF04749PLAC8coord: 4..93
e-value: 1.8E-19
score: 70.6
IPR006461PLAC8 motif-containing proteinPANTHERPTHR15907FAMILY NOT NAMEDcoord: 1..97
NoneNo IPR availablePANTHERPTHR15907:SF90coord: 1..97
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 39..58