Low density lipoprotein-receptor, class A,domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30001071 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9
Homology
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Human
Match: TMPRSS15 (transmembrane serine protease 15 [Source:HGNC Symbol;Acc:HGNC:9490]) HSP 1 Score: 48.9062 bits (115), Expect = 5.453e-6 Identity = 21/44 (47.73%), Postives = 26/44 (59.09%), Query Frame = 3 Query: 237 GNQCLEKTPW--PCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMC 362 GN +E P PC + C+ D CDG+ +CPDG DED KMC Sbjct: 178 GNVSIECLPGSSPCTDALTCIKADLFCDGEVNCPDGSDEDNKMC 221
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Celegans
Match: F58H1.7 (NMDA receptor auxiliary protein [Source:UniProtKB/TrEMBL;Acc:G5EEF9]) HSP 1 Score: 66.2402 bits (160), Expect = 4.099e-13 Identity = 39/133 (29.32%), Postives = 65/133 (48.87%), Query Frame = 3 Query: 261 PWPCKT-------SGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIEKY-----QDWLVPAY----------LGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIEL 593 P PC T SG C+ + ++CDG DC D YDE+ MC A +RPP E + F++ +D+LV + +G D +A L ++PT + ++ M L+ + +++ +ME + EL Sbjct: 34 PAPCPTWHPFACPSGECVPIKYLCDGSPDCSDEYDENKSMCTAATRPPVEETQAFLKALMSAHGKDFLVKVFGPKAKAELSGMGGVD--KVAVALSQTPTADLFASEMKLDDGETQHMLEVMEGILNGSTDEL 164
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Celegans
Match: F58H1.7 (NMDA receptor auxiliary protein [Source:UniProtKB/TrEMBL;Acc:G5EEF9]) HSP 1 Score: 64.6994 bits (156), Expect = 1.161e-12 Identity = 37/126 (29.37%), Postives = 64/126 (50.79%), Query Frame = 3 Query: 261 PWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIEKY-----QDWLVPAY----------LGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIEL 593 P+ C SG C+ + ++CDG DC D YDE+ MC A +RPP E + F++ +D+LV + +G D +A L ++PT + ++ M L+ + +++ +ME + EL Sbjct: 40 PFACP-SGECVPIKYLCDGSPDCSDEYDENKSMCTAATRPPVEETQAFLKALMSAHGKDFLVKVFGPKAKAELSGMGGVD--KVAVALSQTPTADLFASEMKLDDGETQHMLEVMEGILNGSTDEL 162
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Fly
Match: CG31221 (gene:FBgn0051221 transcript:FBtr0083762) HSP 1 Score: 72.7886 bits (177), Expect = 3.205e-15 Identity = 45/160 (28.12%), Postives = 73/160 (45.62%), Query Frame = 3 Query: 243 QCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIE-----------------KYQDWLVPAYLGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFV 671 C P+ C G C+S+ ++CDG DC DGYDED+++C A RPP E F++ K +D L P LG + +A L ES TI ++ ++L + + +L S+ AV L G+ ++ ++ +GF+ Sbjct: 63 ACHPYEPFKCPGDGNCISIQYLCDGAPDCSDGYDEDMRLCTAAKRPPVEETASFLQSLIASHGPNYLEKLFGSKARDALSP--LGGVEK--VAIALSESQTIEDFGAALHLMRSDLEHLRSVFMAVENGDLGMLKSLGIKDSELGDVKFFLEKLVNTGFL 218
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Fly
Match: CG31221 (gene:FBgn0051221 transcript:FBtr0083763) HSP 1 Score: 72.7886 bits (177), Expect = 3.205e-15 Identity = 45/160 (28.12%), Postives = 73/160 (45.62%), Query Frame = 3 Query: 243 QCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIE-----------------KYQDWLVPAYLGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFV 671 C P+ C G C+S+ ++CDG DC DGYDED+++C A RPP E F++ K +D L P LG + +A L ES TI ++ ++L + + +L S+ AV L G+ ++ ++ +GF+ Sbjct: 63 ACHPYEPFKCPGDGNCISIQYLCDGAPDCSDGYDEDMRLCTAAKRPPVEETASFLQSLIASHGPNYLEKLFGSKARDALSP--LGGVEK--VAIALSESQTIEDFGAALHLMRSDLEHLRSVFMAVENGDLGMLKSLGIKDSELGDVKFFLEKLVNTGFL 218
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Fly
Match: CG31221 (gene:FBgn0051221 transcript:FBtr0330030) HSP 1 Score: 73.1738 bits (178), Expect = 4.999e-15 Identity = 45/160 (28.12%), Postives = 73/160 (45.62%), Query Frame = 3 Query: 243 QCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIE-----------------KYQDWLVPAYLGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFV 671 C P+ C G C+S+ ++CDG DC DGYDED+++C A RPP E F++ K +D L P LG + +A L ES TI ++ ++L + + +L S+ AV L G+ ++ ++ +GF+ Sbjct: 63 ACHPYEPFKCPGDGNCISIQYLCDGAPDCSDGYDEDMRLCTAAKRPPVEETASFLQSLIASHGPNYLEKLFGSKARDALSP--LGGVEK--VAIALSESQTIEDFGAALHLMRSDLEHLRSVFMAVENGDLGMLKSLGIKDSELGDVKFFLEKLVNTGFL 218
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Zebrafish
Match: lrp1ba (low density lipoprotein receptor-related protein 1Ba [Source:ZFIN;Acc:ZDB-GENE-050208-608]) HSP 1 Score: 47.7506 bits (112), Expect = 8.958e-6 Identity = 23/49 (46.94%), Postives = 29/49 (59.18%), Query Frame = 3 Query: 246 CLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDE---DVKMCIAKSRPP 383 C K + CK SG C+S D+VCDGD DC D DE +V +C +PP Sbjct: 1071 CDPKAKFTCKVSGKCVSKDWVCDGDIDCEDQSDEEGCEVSVC----KPP 1115
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. UniProt/SwissProt
Match: sp|A0A0F7YYX3|CPROH_CONVC (Neuropeptide prohormone-4 OS=Conus victoriae OX=319920 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 4.951e-16 Identity = 43/141 (30.50%), Postives = 69/141 (48.94%), Query Frame = 3 Query: 246 CLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIEKYQDWLVPAYLGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGF 668 C +P+ C+ S CL L VC+G +DC G DED +C A RP ++ F+E +DW++P +A+ +A L E+ ++ + +NL + I N+ + L+ GMP RAW E+ L + G Sbjct: 51 CDIASPFKCEESPTCLRLFQVCNGRWDCEHGSDEDNALCAAVLRPLECMIWEFLEGQRDWILPNLFNDANTDLVAHALHEAYSMGDLQSYLNLTDQNIENIRNSTRGAIVGDPRPLMALGMPDRAWPEVMYLLKELYNLGL 191
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. UniProt/SwissProt
Match: sp|E2AX35|PROH4_CAMFO (IDLSRF-like peptide OS=Camponotus floridanus OX=104421 GN=EAG_01737 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.810e-15 Identity = 46/163 (28.22%), Postives = 75/163 (46.01%), Query Frame = 3 Query: 234 QGNQCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIE-----------------KYQDWLVPAYLGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFV 671 + + C P+ C G C+S+ ++CDG DC DGYDED ++C A RPP E F++ K +D L P LG + +A L ES TI ++ ++L + + +L S+ AV L G+ ++ ++ K+GF+ Sbjct: 42 RSDACHPYEPFKCPGDGLCISIQYLCDGAPDCQDGYDEDSRLCTAAKRPPVEETATFLQSLLASHGPNYLEKLFGNKARDTLKP--LGGVEK--VAIALSESQTIEDFGAALHLMRSDLEHLRSVFMAVENGDLGMLKSIGIKDSELGDVKFFLEKLVKTGFL 200
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. UniProt/SwissProt
Match: sp|P85831|PROH4_APIME (Prohormone-4 OS=Apis mellifera OX=7460 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.880e-14 Identity = 43/159 (27.04%), Postives = 70/159 (44.03%), Query Frame = 3 Query: 234 QGNQCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIEKYQDWLVPAYLGE-------------ADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFV 671 G+ C P+ C C+S+ ++CDG DC DGYDED ++C A RPP E F++ P YL + +A L ES TI ++ ++L + + +L S+ AV L G+ ++ ++ K+GF+ Sbjct: 43 SGDACRPYEPFKCPGDDTCISIQYLCDGAPDCQDGYDEDSRLCTAAKRPPVEETASFLQSLLASHGPNYLEKLFGTKARDTLKPLGGVNTVAIALSESQTIEDFGAALHLLRTDLEHLRSVFMAVENGDLGMLKSIGIKDSELGDVKFFLEKLVKTGFL 201
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. TrEMBL
Match: A0A0R3U366 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS979 PE=4 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 7.287e-57 Identity = 81/145 (55.86%), Postives = 109/145 (75.17%), Query Frame = 3 Query: 237 GNQCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIEKYQDWLVPAYLGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFV 671 N C E +PWPC++ +CLS DF+CDGD DCPDGYDED +MC AK RPP E L RFI++YQDWL+P +LGE +P +AT+L+ESP+I +Y+K L + Q+ NL SL+E V + +E++L++ GMP AW+EL LF RI +SGFV Sbjct: 9 ANDCPESSPWPCRSPNFCLSFDFICDGDLDCPDGYDEDQEMCTAKQRPPIEYLYRFIKRYQDWLIPEFLGEGEPFDLATKLVESPSIEDYAKSARLAQHQLANLRSLIEGVVQRKEMQLVLLGMPLGAWSELFYLFDRIARSGFV 153
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. TrEMBL
Match: A0A5K3F2A5 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 9.663e-57 Identity = 81/145 (55.86%), Postives = 109/145 (75.17%), Query Frame = 3 Query: 237 GNQCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIEKYQDWLVPAYLGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFV 671 N C E +PWPC++ +CLS DF+CDGD DCPDGYDED +MC AK RPP E L RFI++YQDWL+P +LGE +P +AT+L+ESP+I +Y+K L + Q+ NL SL+E V + +E++L++ GMP AW+EL LF RI +SGFV Sbjct: 41 ANDCPESSPWPCRSPNFCLSFDFICDGDLDCPDGYDEDQEMCTAKQRPPIEYLYRFIKRYQDWLIPEFLGEGEPFDLATKLVESPSIEDYAKSARLAQHQLANLRSLIEGVVQRKEMQLVLLGMPLGAWSELFYLFDRIARSGFV 185
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. TrEMBL
Match: A0A0R3WBB8 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS7927 PE=4 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 3.334e-56 Identity = 81/152 (53.29%), Postives = 112/152 (73.68%), Query Frame = 3 Query: 216 KSTYEFQGNQCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIEKYQDWLVPAYLGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFV 671 K T + N+C E +PWPC+ G+CLS DF+CDG+ DCPDGYDED +MC AK RPP E L RFI++YQDWL+P +LGE P +A +L+ESPTI +Y++ +L ++Q++NL SL+E V + +E+ +++ GMP AW+EL LF RI SGFV Sbjct: 35 KDTKKKIANECPESSPWPCREPGFCLSFDFICDGELDCPDGYDEDREMCTAKERPPLEYLYRFIQRYQDWLIPTFLGEGTPLELAKKLVESPTIEDYARSAHLTEKQLINLNSLIEGVVQRKEMHMVLLGMPLGAWSELFYLFNRIVSSGFV 186
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. TrEMBL
Match: A0A068XY98 (Prohormone 4 OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000443800 PE=4 SV=2) HSP 1 Score: 187.578 bits (475), Expect = 1.442e-55 Identity = 79/145 (54.48%), Postives = 108/145 (74.48%), Query Frame = 3 Query: 237 GNQCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIEKYQDWLVPAYLGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFV 671 N+C E +PWPC+ G+CLS DF+CDG+ DCPDGYDED +MC AK RPP E L RFI++YQDWL+P +LGE P +A +L+ESPTI +Y++ +L ++Q+ NL SL+E V + +E+ +++ GMP AW+EL LF RI SGFV Sbjct: 85 ANECPESSPWPCREPGFCLSFDFICDGELDCPDGYDEDREMCTAKQRPPIEYLFRFIQRYQDWLIPTFLGEGTPLELAKKLVESPTIEDYARSAHLTEKQLFNLNSLIEGVVQRKEMHMVLLGMPLGAWSELFYLFNRIVSSGFV 229
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. TrEMBL
Match: W6UW14 (Prohormone-4 OS=Echinococcus granulosus OX=6210 GN=EGR_02423 PE=4 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 1.534e-55 Identity = 78/145 (53.79%), Postives = 109/145 (75.17%), Query Frame = 3 Query: 237 GNQCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIEKYQDWLVPAYLGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFV 671 N+C E +PWPC+ G+CLS DF+CDG+ DCPDGYDED +MC AK RPP E L RFI++YQDWL+P +LG+ P +A +L+ESPTI +Y++ +L ++Q++NL SL+E V + +E+ +++ GMP AW+EL LF RI SGFV Sbjct: 70 ANECPESSPWPCREPGFCLSFDFICDGELDCPDGYDEDREMCTAKQRPPIEYLFRFIQRYQDWLIPTFLGKGTPLELAKKLVESPTIEDYARSAHLTEKQLVNLNSLIEGVVQRKEMHMVLLGMPLGAWSELFYLFNRIVSSGFV 214
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Planmine SMEST
Match: SMESG000037863.1 (SMESG000037863.1) HSP 1 Score: 426.787 bits (1096), Expect = 9.289e-154 Identity = 206/208 (99.04%), Postives = 207/208 (99.52%), Query Frame = 3 Query: 51 MISIHALFIWLLISEIEPINSYSYKYDQIYLRHNLLKRQKQIELDQNIEEKYRIRKSTYEFQGNQCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIEKYQDWLVPAYLGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFVQ 674 MISIHALFIWLLISEIEPINSYSYKYDQ+YLRHNLLKRQKQIELDQNIEEKYRIRKSTYEFQGNQCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIEKYQDWLVPAYLGEADPGYIATQLIESPTINEYSK MNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFVQ Sbjct: 1 MISIHALFIWLLISEIEPINSYSYKYDQMYLRHNLLKRQKQIELDQNIEEKYRIRKSTYEFQGNQCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIEKYQDWLVPAYLGEADPGYIATQLIESPTINEYSKMMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFVQ 208
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Planmine SMEST
Match: SMESG000059509.1 (SMESG000059509.1) HSP 1 Score: 203.756 bits (517), Expect = 6.439e-66 Identity = 103/181 (56.91%), Postives = 124/181 (68.51%), Query Frame = 3 Query: 153 LLKRQKQIELDQNIEEKYR------IRKSTYE--FQGNQCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIEKYQDWLVPAYLGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFV 671 LL R + EL +N + YR IR S E F GN C E PWPCKT G CLS DF+CDG+ DC D YDED +C AK+RPP+ IL +FI KY+DWL+P YLG P ++T LIES EY K MN+ E+ N SL+E+V+E R+IELI+FGMPPRAWNELSILFGRI KSGF+ Sbjct: 16 LLPRSRTNELREN--QIYRKIFLRPIRLSPGEKAFSGNNCPESKPWPCKTPGVCLSFDFICDGEKDCDDNYDEDENLCTAKNRPPFIILNQFITKYKDWLIPNYLGSGTPEKVSTHLIESKNDQEYIKSMNMTPEEAENFKSLLESVKEGRQIELIMFGMPPRAWNELSILFGRIVKSGFM 194
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Planmine SMEST
Match: SMESG000059509.1 (SMESG000059509.1) HSP 1 Score: 204.912 bits (520), Expect = 1.814e-65 Identity = 103/181 (56.91%), Postives = 124/181 (68.51%), Query Frame = 3 Query: 153 LLKRQKQIELDQNIEEKYR------IRKSTYE--FQGNQCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIEKYQDWLVPAYLGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFV 671 LL R + EL +N + YR IR S E F GN C E PWPCKT G CLS DF+CDG+ DC D YDED +C AK+RPP+ IL +FI KY+DWL+P YLG P ++T LIES EY K MN+ E+ N SL+E+V+E R+IELI+FGMPPRAWNELSILFGRI KSGF+ Sbjct: 88 LLPRSRTNELREN--QIYRKIFLRPIRLSPGEKAFSGNNCPESKPWPCKTPGVCLSFDFICDGEKDCDDNYDEDENLCTAKNRPPFIILNQFITKYKDWLIPNYLGSGTPEKVSTHLIESKNDQEYIKSMNMTPEEAENFKSLLESVKEGRQIELIMFGMPPRAWNELSILFGRIVKSGFM 266
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Planmine SMEST
Match: SMESG000021406.1 (SMESG000021406.1) HSP 1 Score: 193.356 bits (490), Expect = 3.575e-62 Identity = 88/162 (54.32%), Postives = 116/162 (71.60%), Query Frame = 3 Query: 189 NIEEKYRIRKSTYEFQGNQCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIEKYQDWLVPAYLGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFVQ 674 ++ E+ + KS+ GN C E PWPCKT G CLS DF+CDG+ DCPD YDED +C AK+RPP+E+L +F+ KY+ WL+P YLG+ IAT LIES EYS +M L ++Q +L+ L+ AV+E R+IELI+ GMPPRAWNEL +LFGRI SGF++ Sbjct: 20 SLAEESKTAKSS----GNGCPESQPWPCKTPGQCLSFDFICDGEPDCPDKYDEDQSLCTAKNRPPFEVLDKFLLKYESWLIPKYLGQGTHTQIATYLIESTNAEEYSNKMKLTQQQKKDLMDLLTAVKEGRQIELIMEGMPPRAWNELYLLFGRIASSGFLK 177
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Planmine SMEST
Match: SMESG000021406.1 (SMESG000021406.1) HSP 1 Score: 192.971 bits (489), Expect = 4.649e-62 Identity = 88/162 (54.32%), Postives = 116/162 (71.60%), Query Frame = 3 Query: 189 NIEEKYRIRKSTYEFQGNQCLEKTPWPCKTSGYCLSLDFVCDGDFDCPDGYDEDVKMCIAKSRPPYEILKRFIEKYQDWLVPAYLGEADPGYIATQLIESPTINEYSKRMNLNKEQILNLISLMEAVREDREIELIIFGMPPRAWNELSILFGRITKSGFVQ 674 ++ E+ + KS+ GN C E PWPCKT G CLS DF+CDG+ DCPD YDED +C AK+RPP+E+L +F+ KY+ WL+P YLG+ IAT LIES EYS +M L ++Q +L+ L+ AV+E R+IELI+ GMPPRAWNEL +LFGRI SGF++ Sbjct: 17 SLAEESKTAKSS----GNGCPESQPWPCKTPGQCLSFDFICDGEPDCPDKYDEDQSLCTAKNRPPFEVLDKFLLKYESWLIPKYLGQGTHTQIATYLIESTNAEEYSNKMKLTQQQKKDLMDLLTAVKEGRQIELIMEGMPPRAWNELYLLFGRIASSGFLK 174 The following BLAST results are available for this feature:
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 3
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 3
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30001071 ID=SMED30001071|Name=Low density lipoprotein-receptor, class A,domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=765bpback to top protein sequence of SMED30001071-orf-1 >SMED30001071-orf-1 ID=SMED30001071-orf-1|Name=SMED30001071-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=209bp MISIHALFIWLLISEIEPINSYSYKYDQIYLRHNLLKRQKQIELDQNIEEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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