TPA_inf: Y box protein 4-like protein

Overview


Name	TPA_inf: Y box protein 4-like protein (DAA34914.1)
Smed ID	SMED30000951
Length (bp)	1330

Neoblast Clusters

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30000951

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 9

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
prepharyngeal region	SMED30000951	SMESG000076962.1	SmedASXL_019822	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
testis	SMED30000951	SMESG000076962.1	BK007100	smed_ncbi_20200123	PMID:22074376 Chong et al., 2011
spermatogonium	SMED30000951	SMESG000076962.1	BK007100	smed_ncbi_20200123	PMID:22074376 Chong et al., 2011
spermatocyte	SMED30000951	SMESG000076962.1	BK007100	smed_ncbi_20200123	PMID:22074376 Chong et al., 2011
spermatid	SMED30000951	SMESG000076962.1	BK007100	smed_ncbi_20200123	PMID:22074376 Chong et al., 2011
testis	SMED30000951	SMESG000076962.1	Contig5455_SE3	GPL10652	PMID:20844018 Wang et al., 2010
early male germ cell	SMED30000951	SMESG000076962.1	Contig5455_SE3	GPL10652	PMID:20844018 Wang et al., 2010
testis primordium	SMED30000951	SMESG000076962.1	Contig5455_SE3	GPL10652	PMID:20844018 Wang et al., 2010
testis primordium	SMED30000951	SMESG000076962.1	PL08004B2A05_SE3	GPL10652	PMID:20844018 Wang et al., 2010

Note: Hover over icons to view figure legend

Homology

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Human
Match: YBX3 (Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428])

HSP 1 Score: 124.02 bits (310), Expect = 1.367e-31
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = 1

Query:   88 TEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
             EKK+LATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGPDG+PV+GS+YAAD
Sbjct:   82 AEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 173

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Human
Match: YBX3 (Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428])

HSP 1 Score: 123.635 bits (309), Expect = 7.996e-31
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = 1

Query:   88 TEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
             EKK+LATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGPDG+PV+GS+YAAD
Sbjct:   82 AEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 173

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Human
Match: YBX1 (Y-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8014])

HSP 1 Score: 121.324 bits (303), Expect = 2.091e-30
Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = 1

Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            +KK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PVQGSKYAAD
Sbjct:   51 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD 141

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Human
Match: YBX2 (Y-box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948])

HSP 1 Score: 110.153 bits (274), Expect = 3.873e-26
Identity = 68/107 (63.55%), Postives = 86/107 (80.37%), Query Frame = 1

Query:   52 IQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRH 372
            +  +PA  +    +K +LA ++ G VKWFNV++GYGFINRND +ED+FVHQTAI +NNPRK+ RSVGDGE VEFDVVEGEKG EA NVTGP G+PV+GS+YA ++R 
Sbjct:   73 VSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRK 179

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Query:   52 IQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRH 372
            +  +PA  +    +K +LA ++ G VKWFNV++GYGFINRND +ED+FVHQTAI +NNPRK+ RSVGDGE VEFDVVEGEKG EA NVTGP G+PV+GS+YA ++R 
Sbjct:   73 VSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRK 179

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Celegans
Match: cey-1 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:O62213])

HSP 1 Score: 117.472 bits (293), Expect = 1.568e-30
Identity = 69/95 (72.63%), Postives = 79/95 (83.16%), Query Frame = 1

Query:   82 HPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADK 366
             P +K + ATK+ G VKWFNVK+GYGFINR D  EDIFVHQTAI+ NNP K+ RS+GD EEV FD+VEG KGLEAA+VTGPDG PVQGSKYAAD+
Sbjct:   10 QPADKPVKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKYAADR 104

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Celegans
Match: cey-3 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91398])

HSP 1 Score: 74.7146 bits (182), Expect = 7.344e-15
Identity = 48/88 (54.55%), Postives = 66/88 (75.00%), Query Frame = 1

Query:   94 KKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKW-QRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKY 354
            K +L   + GKVKW++V   YGFI+R+D ++D+FVHQTAI K++  K+  R++ D EEV FD+V+G+ G EAANVTGP G+ V GSKY
Sbjct:   57 KIVLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKY 144

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Query:   94 KKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKW-QRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKY 354
            K +L   + GKVKW++V   YGFI+R+D ++D+FVHQTAI K++  K+  R++ D EEV FD+V+G+ G EAANVTGP G+ V GSKY
Sbjct:   57 KIVLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKY 144

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Celegans
Match: cey-2 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91306])

HSP 1 Score: 71.633 bits (174), Expect = 7.899e-14
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 1

Query:   94 KKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRK-WQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKY 354
            K  + T + GKVKW++V   YGFI+RND ++DIFVHQTAI K+   K + R++GD EEV FD+VEG+ G EAANVTGP+G  V GS+Y
Sbjct:   59 KTAITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Celegans
Match: cey-4 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5EDV3])

HSP 1 Score: 70.4774 bits (171), Expect = 2.666e-13
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 1

Query:   94 KKILATKINGKVKWFNVKSGYGFINRN---DNQEDIFVHQTAILKNNPRK-WQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYA 357
            KK++ T + G VKWF+V+  YGF+ R+   D  ED FVHQTAI K++  K + R++ D E V FD+VEG KG EAANVTGPDG  V+GS++A
Sbjct:   82 KKVIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Fly
Match: yps (gene:FBgn0022959 transcript:FBtr0076027)

HSP 1 Score: 113.62 bits (283), Expect = 1.032e-27
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = 1

Query:   85 PTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKR 369
            P  K+++ATK+ G VKWFNVKSGYGFINRND +ED+FVHQ+AI +NNP+K  RSVGDGE VEFDVV GEKG EAANVTGP G PV+GS++AADKR
Sbjct:   52 PPTKEVIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKR 146

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Fly
Match: yps (gene:FBgn0022959 transcript:FBtr0305992)

HSP 1 Score: 113.235 bits (282), Expect = 1.051e-27
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = 1

Query:   85 PTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKR 369
            P  K+++ATK+ G VKWFNVKSGYGFINRND +ED+FVHQ+AI +NNP+K  RSVGDGE VEFDVV GEKG EAANVTGP G PV+GS++AADKR
Sbjct:   52 PPTKEVIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKR 146

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Fly
Match: lin-28 (gene:FBgn0035626 transcript:FBtr0077090)

HSP 1 Score: 51.6026 bits (122), Expect = 2.085e-7
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1

Query:  121 GKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKY 354
            GK KWFNV  G+GF+  ND  +++FVHQ+ I  +      RS+G+ EEVEF+     +GLEA  V+   G   QGS Y
Sbjct:   41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGF----RSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTY 114

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 121.324 bits (303), Expect = 1.137e-30
Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = 1

Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            +KK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PVQGSKYAAD
Sbjct:   31 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD 121

[Close]

Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            +KK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PVQGSKYAAD
Sbjct:   31 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD 121

[Close]

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 120.939 bits (302), Expect = 1.349e-30
Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = 1

Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            +KK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PVQGSKYAAD
Sbjct:   31 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD 121

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Xenopus
Match: hmgcs1 (3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:Xenbase;Acc:XB-GENE-942074])

HSP 1 Score: 128.257 bits (321), Expect = 4.451e-33
Identity = 75/95 (78.95%), Postives = 86/95 (90.53%), Query Frame = 1

Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 375
            EKK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PVQGSKYAAD+ H+
Sbjct:   29 EKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHF 123

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Xenopus
Match: ybx3 (Y-box binding protein 3 [Source:NCBI gene;Acc:548572])

HSP 1 Score: 118.627 bits (296), Expect = 3.221e-30
Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 1

Query:   94 KKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            +K+LATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVV GEKG EAANVTGP G PVQGS+YAAD
Sbjct:   29 RKVLATKVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEKGAEAANVTGPKGAPVQGSRYAAD 118

[Close]

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Xenopus
Match: hmgcs1 (3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:Xenbase;Acc:XB-GENE-942074])

HSP 1 Score: 119.013 bits (297), Expect = 1.041e-29
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 1

Query:  100 ILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 375
             + TK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PVQGSKYAAD+ H+
Sbjct:   40 CVTTKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHF 131

[Close]

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Mouse
Match: Ybx3 (Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670])

HSP 1 Score: 125.176 bits (313), Expect = 2.601e-32
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 1

Query:   49 DIQTSPAERSIHPT-----EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            D    PA  S  P      EKK+LATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGPDG+PV+GS+YAAD
Sbjct:   56 DAAPGPAPASSAPAGGEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 165

[Close]

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Mouse
Match: Ybx3 (Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670])

HSP 1 Score: 124.79 bits (312), Expect = 1.604e-31
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 1

Query:   49 DIQTSPAERSIHPT-----EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            D    PA  S  P      EKK+LATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGPDG+PV+GS+YAAD
Sbjct:   56 DAAPGPAPASSAPAGGEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 165

[Close]

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Mouse
Match: Ybx1 (Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146])

HSP 1 Score: 121.324 bits (303), Expect = 1.423e-30
Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = 1

Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            +KK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PVQGSKYAAD
Sbjct:   49 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD 139

[Close]

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Mouse
Match: Ybx2 (Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372])

HSP 1 Score: 109.768 bits (273), Expect = 3.760e-26
Identity = 68/99 (68.69%), Postives = 83/99 (83.84%), Query Frame = 1

Query:   61 SPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYA 357
            +PA  +    +K +LA ++ G VKWFNV++GYGFINRND +ED+FVHQTAI +NNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PV+GS+YA
Sbjct:   77 TPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRYA 175

[Close]

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Mouse
Match: Ybx2 (Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372])

HSP 1 Score: 107.071 bits (266), Expect = 9.690e-26
Identity = 66/87 (75.86%), Postives = 77/87 (88.51%), Query Frame = 1

Query:   97 KILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYA 357
            K LA ++ G VKWFNV++GYGFINRND +ED+FVHQTAI +NNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PV+GS+YA
Sbjct:   12 KALAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRYA 98

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BLAST of TPA_inf: Y box protein 4-like protein vs. UniProt/SwissProt
Match: sp|P41824|YBOXH_APLCA (Y-box factor homolog OS=Aplysia californica OX=6500 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.613e-31
Identity = 79/119 (66.39%), Postives = 96/119 (80.67%), Query Frame = 1

Query:   43 MADIQTSP--------AERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 375
            MAD +  P         E++    EKKI+A++++G VKWFNVKSGYGFINR+D +ED+FVHQTAI+KNNPRK+ RSVGDGE+VEFDVVEGEKG EAANVTGP+G  VQGSKYAAD+R +
Sbjct:    1 MADTEKQPEVEENQPDQEQNEEQKEKKIIASQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSKYAADRRRF 119

[Close]

BLAST of TPA_inf: Y box protein 4-like protein vs. UniProt/SwissProt
Match: sp|Q9JKB3|YBOX3_MOUSE (Y-box-binding protein 3 OS=Mus musculus OX=10090 GN=Ybx3 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.122e-30
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 1

Query:   49 DIQTSPAERSIHPT-----EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            D    PA  S  P      EKK+LATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGPDG+PV+GS+YAAD
Sbjct:   56 DAAPGPAPASSAPAGGEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 165

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BLAST of TPA_inf: Y box protein 4-like protein vs. UniProt/SwissProt
Match: sp|Q62764|YBOX3_RAT (Y-box-binding protein 3 OS=Rattus norvegicus OX=10116 GN=Ybx3 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.144e-30
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 1

Query:   49 DIQTSPAERSIHPT-----EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            D    PA  S  P      EKK+LATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGPDG+PV+GS+YAAD
Sbjct:   56 DAAPGPAPASSAPAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 165

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BLAST of TPA_inf: Y box protein 4-like protein vs. UniProt/SwissProt
Match: sp|P21573|YBOX1_XENLA (Y-box-binding protein 1 OS=Xenopus laevis OX=8355 GN=ybx1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.958e-30
Identity = 73/91 (80.22%), Postives = 84/91 (92.31%), Query Frame = 1

Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            +KK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP+G+PVQGSKYAAD
Sbjct:   29 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPEGVPVQGSKYAAD 119

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BLAST of TPA_inf: Y box protein 4-like protein vs. UniProt/SwissProt
Match: sp|P16989|YBOX3_HUMAN (Y-box-binding protein 3 OS=Homo sapiens OX=9606 GN=YBX3 PE=1 SV=4)

HSP 1 Score: 123.635 bits (309), Expect = 3.840e-30
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = 1

Query:   88 TEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
             EKK+LATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGPDG+PV+GS+YAAD
Sbjct:   82 AEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 173

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BLAST of TPA_inf: Y box protein 4-like protein vs. TrEMBL
Match: F9W2W0 (Y box protein 4-like protein OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 491.115 bits (1263), Expect = 6.412e-170
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 1

Query:   43 MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHYXXXXXXXXXXXXXXXXXXXLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTEXXXXXXXXXXXXXXXXXXXXXQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYXXXXXXXXXXXXXXXXXXXXXXXXXXNSYIRGYSPGPPNTRRYMDSRPGPVMNTYSDSGPIIPXXXXXXXXXXXXXPIMYHKINSGVSSRSTRGRQFGGGEXXXXXXXXXXXXXXXXXXXXTVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS 1176
            MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPGPPNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS
Sbjct:    1 MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPGPPNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS 378

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BLAST of TPA_inf: Y box protein 4-like protein vs. TrEMBL
Match: Q86FT3 (Y1 protein OS=Dugesia etrusca OX=47672 GN=Y1 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 1.038e-105
Identity = 250/275 (90.91%), Postives = 259/275 (94.18%), Query Frame = 1

Query:   43 MADIQTSPAERSIHPTEKKILA-----TKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHYXXXXXXXXXXXXXXXXXXXLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTEXXXXXXXXXXXXXXXXXXXXXQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYXXXXXXXXXXXXXXXXXXXXXXXXXXNSYIRGYSPGPPNTRRYMDSRPGPVMNTY 852
            MADIQTSP ERS+H TEKKILA     TKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGG+VRSL+NGPRGRSLSREMDST EDAGPEGDAVFGTERRRTLP RRRSYYPRP+PPPPQG YYMNRR +PSRDDYRE DEYENR M++GYRGGGVPRRRFIGGFGRGGHANGGSG N+YIRGYSPGPPN RRYMDSRPGPVMN +
Sbjct:    1 MADIQTSPTERSVHATEKKILAYDYLATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGKVRSLKNGPRGRSLSREMDSTTEDAGPEGDAVFGTERRRTLPIRRRSYYPRPMPPPPQGGYYMNRRPLPSRDDYRESDEYENRTMIMGYRGGGVPRRRFIGGFGRGGHANGGSGANTYIRGYSPGPPNARRYMDSRPGPVMNIF 275

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BLAST of TPA_inf: Y box protein 4-like protein vs. TrEMBL
Match: A0A4S2LJH5 (CSD_1 domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_006721 PE=4 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.148e-31
Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 1

Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 375
            EKK++AT+I G VKWFNVKSGYGFINR D +EDIFVHQ+AILKNNP KWQRSVGDGE+VEFDVV+G+KGLEA NVTGP G+PVQGSKYAADKR Y
Sbjct:   17 EKKVVATRITGVVKWFNVKSGYGFINRTDTKEDIFVHQSAILKNNPHKWQRSVGDGEDVEFDVVQGDKGLEATNVTGPHGVPVQGSKYAADKRRY 111

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BLAST of TPA_inf: Y box protein 4-like protein vs. TrEMBL
Match: A0A1S8X552 (Cold-shock DNA-binding domain protein OS=Opisthorchis viverrini OX=6198 GN=X801_02330 PE=4 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.578e-31
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 1

Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 375
            EKK++AT+I G VKWFNVKSGYGFINR D +EDIFVHQ+AILKNNP KWQRSVGDGEEVEFDVV+G+KGLEA NVTGP G+PVQGSKYAADKR Y
Sbjct:   17 EKKVVATRITGVVKWFNVKSGYGFINRTDTKEDIFVHQSAILKNNPHKWQRSVGDGEEVEFDVVQGDKGLEATNVTGPHGVPVQGSKYAADKRRY 111

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BLAST of TPA_inf: Y box protein 4-like protein vs. TrEMBL
Match: A0A074ZT23 (CSD_1 domain-containing protein OS=Opisthorchis viverrini OX=6198 GN=T265_06248 PE=4 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.608e-31
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 1

Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 375
            EKK++AT+I G VKWFNVKSGYGFINR D +EDIFVHQ+AILKNNP KWQRSVGDGEEVEFDVV+G+KGLEA NVTGP G+PVQGSKYAADKR Y
Sbjct:   17 EKKVVATRITGVVKWFNVKSGYGFINRTDTKEDIFVHQSAILKNNPHKWQRSVGDGEEVEFDVVQGDKGLEATNVTGPHGVPVQGSKYAADKRRY 111

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Cavefish
Match: ybx1 (Y-box binding protein 1 [Source:NCBI gene;Acc:103040011])

HSP 1 Score: 122.094 bits (305), Expect = 5.054e-31
Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = 1

Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            +KK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PVQGSKYAAD
Sbjct:   32 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD 122

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Cavefish
Match: YBX2 (Y-box-binding protein 2-A-like [Source:NCBI gene;Acc:103036193])

HSP 1 Score: 115.931 bits (289), Expect = 7.149e-29
Identity = 73/110 (66.36%), Postives = 89/110 (80.91%), Query Frame = 1

Query:   49 DIQTSP---AE-RSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADK 366
            D+Q +P   AE +   P E+K++AT + G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVE  KG EAANVTGP G+PV+GS+YA +K
Sbjct:    5 DVQEAPPSAAETQEDLPPERKVIATLVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEIVEFDVVEATKGSEAANVTGPGGVPVKGSRYAPNK 114

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Cavefish
Match: YBX2 (Y-box-binding protein 2-A-like [Source:NCBI gene;Acc:103036193])

HSP 1 Score: 110.538 bits (275), Expect = 7.814e-27
Identity = 67/93 (72.04%), Postives = 78/93 (83.87%), Query Frame = 1

Query:   88 TEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADK 366
            T   I+AT + G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVE  KG EAANVTGP G+PV+GS+YA +K
Sbjct:   15 TSVSIVATLVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEIVEFDVVEATKGSEAANVTGPGGVPVKGSRYAPNK 107

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Nematostella
Match: EDO41469 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S475])

HSP 1 Score: 117.857 bits (294), Expect = 2.188e-32
Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 1

Query:  100 ILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKR 369
            I ATK+ G VKWFNVK+GYGFINR+DN+EDIFVHQTAI KNNP+K+ RSVGDGE VEF+VV G KGLEA+NVTGPDG PVQGSKYA D+R
Sbjct:    3 IAATKVTGTVKWFNVKNGYGFINRDDNKEDIFVHQTAIAKNNPKKYLRSVGDGEVVEFNVVSGTKGLEASNVTGPDGEPVQGSKYAPDRR 92

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Nematostella
Match: EDO44703 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RV03])

HSP 1 Score: 52.7582 bits (125), Expect = 2.267e-7
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1

Query:  115 INGKVKWFNVKSGYGFINRNDNQEDIFVHQTAI 213
              G VKWFN+  G+GFI R+D  ED+FVHQ+AI
Sbjct:  483 CTGSVKWFNLIKGFGFITRDDGGEDVFVHQSAI 515

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Medaka
Match: ybx1 (Y-box binding protein 1 [Source:NCBI gene;Acc:100049221])

HSP 1 Score: 118.627 bits (296), Expect = 6.478e-30
Identity = 72/92 (78.26%), Postives = 83/92 (90.22%), Query Frame = 1

Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADK 366
            +KK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+ VQGSKYAAD+
Sbjct:   33 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVAVQGSKYAADR 124

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Medaka
Match: ENSORLT00000007875.2 (Y-box binding protein 2 [Source:NCBI gene;Acc:100049372])

HSP 1 Score: 115.931 bits (289), Expect = 3.400e-28
Identity = 67/93 (72.04%), Postives = 81/93 (87.10%), Query Frame = 1

Query:   88 TEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADK 366
            +E+K++AT + G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDV+E  KG EAANVTGP GIPV+GS+YA +K
Sbjct:  103 SERKVIATAVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGPGGIPVKGSRYAPNK 195

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Medaka
Match: ENSORLT00000007880.2 (Y-box binding protein 2 [Source:NCBI gene;Acc:100049372])

HSP 1 Score: 115.931 bits (289), Expect = 3.852e-28
Identity = 67/93 (72.04%), Postives = 81/93 (87.10%), Query Frame = 1

Query:   88 TEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADK 366
            +E+K++AT + G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDV+E  KG EAANVTGP GIPV+GS+YA +K
Sbjct:  103 SERKVIATAVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGPGGIPVKGSRYAPNK 195

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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Medaka
Match: ENSORLT00000029434.1 (pep primary_assembly:ASM223467v1:3:36782961:36787024:1 gene:ENSORLG00000026367.1 transcript:ENSORLT00000029434.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 64.3142 bits (155), Expect = 2.013e-12
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1

Query:   88 TEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRS 246
            +++K++ T +   VKWF+V +GYG INRN+ +ED+FV QTAI  NNPR + RS
Sbjct:   28 SKRKVITTGVQDTVKWFHVCNGYGLINRNNTKEDVFVPQTAIKNNNPRNFLRS 80

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BLAST of TPA_inf: Y box protein 4-like protein vs. Planmine SMEST
Match: SMESG000076962.1 (SMESG000076962.1)

HSP 1 Score: 488.034 bits (1255), Expect = 2.829e-172
Identity = 377/378 (99.74%), Postives = 377/378 (99.74%), Query Frame = 1

Query:   43 MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHYXXXXXXXXXXXXXXXXXXXLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTEXXXXXXXXXXXXXXXXXXXXXQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYXXXXXXXXXXXXXXXXXXXXXXXXXXNSYIRGYSPGPPNTRRYMDSRPGPVMNTYSDSGPIIPXXXXXXXXXXXXXPIMYHKINSGVSSRSTRGRQFGGGEXXXXXXXXXXXXXXXXXXXXTVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS 1176
            MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPG PNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS
Sbjct:    1 MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPGSPNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS 378

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BLAST of TPA_inf: Y box protein 4-like protein vs. Planmine SMEST
Match: SMESG000076962.1 (SMESG000076962.1)

HSP 1 Score: 481.871 bits (1239), Expect = 8.271e-170
Identity = 376/378 (99.47%), Postives = 376/378 (99.47%), Query Frame = 1

Query:   43 MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHYXXXXXXXXXXXXXXXXXXXLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTEXXXXXXXXXXXXXXXXXXXXXQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYXXXXXXXXXXXXXXXXXXXXXXXXXXNSYIRGYSPGPPNTRRYMDSRPGPVMNTYSDSGPIIPXXXXXXXXXXXXXPIMYHKINSGVSSRSTRGRQFGGGEXXXXXXXXXXXXXXXXXXXXTVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS 1176
            MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPG PNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAPSLDAESNQSDDDAIQ TSELNLEEIRAS
Sbjct:    1 MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPGSPNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAPSLDAESNQSDDDAIQ-TSELNLEEIRAS 377

[Close]

BLAST of TPA_inf: Y box protein 4-like protein vs. Planmine SMEST
Match: SMESG000076962.1 (SMESG000076962.1)

HSP 1 Score: 481.485 bits (1238), Expect = 1.435e-169
Identity = 377/383 (98.43%), Postives = 377/383 (98.43%), Query Frame = 1

Query:   43 MADIQTSPAERSIHPTEKKILA-----TKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHYXXXXXXXXXXXXXXXXXXXLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTEXXXXXXXXXXXXXXXXXXXXXQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYXXXXXXXXXXXXXXXXXXXXXXXXXXNSYIRGYSPGPPNTRRYMDSRPGPVMNTYSDSGPIIPXXXXXXXXXXXXXPIMYHKINSGVSSRSTRGRQFGGGEXXXXXXXXXXXXXXXXXXXXTVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS 1176
            MADIQTSPAERSIHPTEKKILA     TKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPG PNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS
Sbjct:    1 MADIQTSPAERSIHPTEKKILAYDYLATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPGSPNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS 383

[Close]

BLAST of TPA_inf: Y box protein 4-like protein vs. Planmine SMEST
Match: SMESG000076962.1 (SMESG000076962.1)

HSP 1 Score: 413.69 bits (1062), Expect = 4.221e-143
Identity = 315/316 (99.68%), Postives = 315/316 (99.68%), Query Frame = 1

Query:   43 MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHYXXXXXXXXXXXXXXXXXXXLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTEXXXXXXXXXXXXXXXXXXXXXQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYXXXXXXXXXXXXXXXXXXXXXXXXXXNSYIRGYSPGPPNTRRYMDSRPGPVMNTYSDSGPIIPXXXXXXXXXXXXXPIMYHKINSGVSSRSTRGRQFGGGE 990
            MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPG PNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGE
Sbjct:    1 MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPGSPNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGE 316

[Close]

BLAST of TPA_inf: Y box protein 4-like protein vs. Planmine SMEST
Match: SMESG000032180.1 (SMESG000032180.1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.297e-20
Identity = 55/89 (61.80%), Postives = 75/89 (84.27%), Query Frame = 1

Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYA 357
            +K++L T+I GKVKWFNVK GYGF+ R+DN EDIF+HQ+AI+K+NP   ++SVG+GEE++FD+V+G KG EAANV+  DG  V+GS+YA
Sbjct:   21 QKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 109

The following BLAST results are available for this feature:

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Human
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Celegans
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Fly
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Zebrafish
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Xenopus
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Mouse
BLAST of TPA_inf: Y box protein 4-like protein vs. UniProt/SwissProt
BLAST of TPA_inf: Y box protein 4-like protein vs. TrEMBL
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Cavefish
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Sea Lamprey
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Yeast
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Nematostella
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Medaka
BLAST of TPA_inf: Y box protein 4-like protein vs. Planmine SMEST

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
YBX3	1.367e-31	80.43	Y-box binding protein 3 [Source:HGNC Symbol;Acc:HG...	[more]
YBX3	7.996e-31	80.43	Y-box binding protein 3 [Source:HGNC Symbol;Acc:HG...	[more]
YBX1	2.091e-30	80.22	Y-box binding protein 1 [Source:HGNC Symbol;Acc:HG...	[more]
YBX2	3.873e-26	63.55	Y-box binding protein 2 [Source:HGNC Symbol;Acc:HG...	[more]
YBX2	3.873e-26	63.55	Y-box binding protein 2 [Source:HGNC Symbol;Acc:HG...	[more]

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
cey-1	1.568e-30	72.63	C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:O62...	[more]
cey-3	7.344e-15	54.55	C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91...	[more]
cey-3	7.344e-15	54.55	C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91...	[more]
cey-2	7.899e-14	57.95	C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91...	[more]
cey-4	2.666e-13	54.35	C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5E...	[more]

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3


Match Name	E-value	Identity	Description
yps	1.032e-27	73.68	gene:FBgn0022959 transcript:FBtr0076027	[more]
yps	1.051e-27	73.68	gene:FBgn0022959 transcript:FBtr0305992	[more]
lin-28	2.085e-7	44.87	gene:FBgn0035626 transcript:FBtr0077090	[more]

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
ybx1	1.137e-30	80.22	Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-...	[more]
ybx1	1.137e-30	80.22	Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-...	[more]
ybx1	1.349e-30	80.22	Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-...	[more]

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3


Match Name	E-value	Identity	Description
hmgcs1	4.451e-33	78.95	3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:...	[more]
ybx3	3.221e-30	78.89	Y-box binding protein 3 [Source:NCBI gene;Acc:5485...	[more]
hmgcs1	1.041e-29	77.17	3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:...	[more]

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Ybx3	2.601e-32	71.82	Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670...	[more]
Ybx3	1.604e-31	71.82	Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670...	[more]
Ybx1	1.423e-30	80.22	Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]	[more]
Ybx2	3.760e-26	68.69	Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372...	[more]
Ybx2	9.690e-26	75.86	Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372...	[more]

BLAST of TPA_inf: Y box protein 4-like protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P41824\|YBOXH_APLCA	2.613e-31	66.39	Y-box factor homolog OS=Aplysia californica OX=650...	[more]
sp\|Q9JKB3\|YBOX3_MOUSE	1.122e-30	71.82	Y-box-binding protein 3 OS=Mus musculus OX=10090 G...	[more]
sp\|Q62764\|YBOX3_RAT	1.144e-30	71.82	Y-box-binding protein 3 OS=Rattus norvegicus OX=10...	[more]
sp\|P21573\|YBOX1_XENLA	1.958e-30	80.22	Y-box-binding protein 1 OS=Xenopus laevis OX=8355 ...	[more]
sp\|P16989\|YBOX3_HUMAN	3.840e-30	80.43	Y-box-binding protein 3 OS=Homo sapiens OX=9606 GN...	[more]

BLAST of TPA_inf: Y box protein 4-like protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
F9W2W0	6.412e-170	100.00	Y box protein 4-like protein OS=Schmidtea mediterr...	[more]
Q86FT3	1.038e-105	90.91	Y1 protein OS=Dugesia etrusca OX=47672 GN=Y1 PE=2 ...	[more]
A0A4S2LJH5	2.148e-31	82.11	CSD_1 domain-containing protein OS=Opisthorchis fe...	[more]
A0A1S8X552	3.578e-31	83.16	Cold-shock DNA-binding domain protein OS=Opisthorc...	[more]
A0A074ZT23	3.608e-31	83.16	CSD_1 domain-containing protein OS=Opisthorchis vi...	[more]

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
ybx1	5.054e-31	80.22	Y-box binding protein 1 [Source:NCBI gene;Acc:1030...	[more]
YBX2	7.149e-29	66.36	Y-box-binding protein 2-A-like [Source:NCBI gene;A...	[more]
YBX2	7.814e-27	72.04	Y-box-binding protein 2-A-like [Source:NCBI gene;A...	[more]

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO41469	2.188e-32	78.89	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO44703	2.267e-7	60.61	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4


Match Name	E-value	Identity	Description
ybx1	6.478e-30	78.26	Y-box binding protein 1 [Source:NCBI gene;Acc:1000...	[more]
ENSORLT00000007875.2	3.400e-28	72.04	Y-box binding protein 2 [Source:NCBI gene;Acc:1000...	[more]
ENSORLT00000007880.2	3.852e-28	72.04	Y-box binding protein 2 [Source:NCBI gene;Acc:1000...	[more]
ENSORLT00000029434.1	2.013e-12	52.83	pep primary_assembly:ASM223467v1:3:36782961:367870...	[more]

BLAST of TPA_inf: Y box protein 4-like protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000076962.1	2.829e-172	99.74	SMESG000076962.1	[more]
SMESG000076962.1	8.271e-170	99.47	SMESG000076962.1	[more]
SMESG000076962.1	1.435e-169	98.43	SMESG000076962.1	[more]
SMESG000076962.1	4.221e-143	99.68	SMESG000076962.1	[more]
SMESG000032180.1	1.297e-20	61.80	SMESG000032180.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Cross References

External references for this transcript


Database	Accession
SmedGD GBrowse	SMED30000951
GenBank	DAA34914.1

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30000951 ID=SMED30000951|Name=TPA_inf: Y box protein 4-like protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1330bp
ATTCATTGGATAGGAAGCTAGGACAAAACTGAAGCTTAATTTATGGCAGA
TATACAAACATCGCCAGCAGAAAGATCTATTCATCCTACTGAGAAAAAGA
TCTTAGCAACCAAAATTAATGGCAAGGTTAAATGGTTCAATGTGAAAAGC
GGCTATGGATTCATCAATAGAAATGACAATCAGGAAGACATTTTTGTTCA
TCAGACTGCAATTTTAAAAAACAATCCTCGTAAATGGCAAAGATCTGTTG
GAGATGGAGAAGAAGTTGAATTCGATGTAGTTGAAGGAGAAAAGGGATTA
GAAGCTGCAAATGTTACGGGTCCTGATGGGATACCTGTACAGGGAAGTAA
ATACGCAGCGGATAAAAGACATTATCGCTCAAGATCTTTTGGCCGAGCTG
TTGGTAGGGGATTCGGTGGTCGAGTAAGATCCCTTAGAAATGGTCCAAGG
GGTAGATCGTTATCAAGAGAAATGGATTCGACAAATGAAGATGCCGGACC
AGAAGGAGATGCTGTATTTGGGACAGAAAGAAGACGAACCTTACCTAGTC
GAAGAAGATCTTATTATCCACGTCCTATACCTCCACCTCCCCAAGGGAGT
TATTATATGAATAGAAGACATATACCTTCCCGGGATGATTATCGTGAACC
GGATGAATATGAAAATCGTCCTATGCTTTTAGGTTACCGTGGTGGTGGAG
TTCCTAGACGAAGATTTATTGGTGGATTTGGTCGTGGCGGTCATGCTAAT
GGAGGTTCAGGAGGAAATTCATACATAAGAGGCTATTCTCCAGGACCTCC
TAATACACGGAGATATATGGATAGTAGACCAGGCCCAGTTATGAACACTT
ATTCAGATTCAGGGCCAATAATTCCAAGAGGCACTAGTCGATTTAGACGG
GGCAGAGGAGGACGTCCAATAATGTATCACAAAATTAACAGTGGAGTAAG
TAGCAGATCAACTAGAGGACGACAATTTGGAGGGGGTGAACGCAGAAATT
GGAGAGATTATAATTCTTATAATAACAGAAACAATGAAGATAACAACGAG
ACAGTATCGGATGAAAAGAGAGCAACAGGTGGCCGAGCCCCAAGCTTGGA
TGCCGAAAGCAACCAGAGCGATGACGATGCTATCCAGAAGACGTCTGAGT
TAAATTTAGAGGAAATAAGAGCATCTTGAATCTTTTTTTTGATGAAAATT
GATATAATATTGTTATTTTTGTGTTATCTCATTTATATCCTAGCTATGTT
AGTTAAATGTTTCAAACCTTCTGTTGTACTAACCAGATACTAAGTTCTAT
CTATTTACAAACAAAACTTGGAGGCCTTTG

protein sequence of SMED30000951-orf-1

>SMED30000951-orf-1 ID=SMED30000951-orf-1|Name=SMED30000951-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=379bp
MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDI
FVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQ
GSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNED
AGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDY
REPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSP
GPPNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINS
GVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAP
SLDAESNQSDDDAIQKTSELNLEEIRAS*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000208	testis
PLANA:0000220	spermatogonium
PLANA:0000221	spermatocyte
PLANA:0000222	spermatid
PLANA:0000419	prepharyngeal region
PLANA:0002030	early male germ cell
PLANA:0003304	testis primordium

Vocabulary: **INTERPRO**
Term	Definition
IPR002059	CSP_DNA-bd
IPR011129	CSD
IPR012340	NA-bd_OB-fold
IPR019844	CSD_1

Vocabulary: **biological process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **molecular function**
Term	Definition
GO:0003677	DNA binding
GO:0003676	nucleic acid binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 67..85 score: 57.36 coord: 27..42 score: 69.66 coord: 48..57 score: 68.88
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 26..93 e-value: 1.9E-25 score: 88.5
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 25..93 e-value: 2.52592E-23 score: 89.9454
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 26..94 e-value: 3.2E-22 score: 89.8
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 18..106 e-value: 1.0E-28 score: 101.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 359..378
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..378
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 334..348
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..183
None	No IPR available	PANTHER	PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	coord: 14..145
None	No IPR available	PANTHER	PTHR11544:SF122	NUCLEASE-SENSITIVE ELEMENT-BINDING PROTEIN 1	coord: 14..145
None	No IPR available	PROSITE	PS51857	CSD_2	coord: 24..93 score: 28.996
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 38..57
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 22..93

Main menu

TPA_inf: Y box protein 4-like protein

Zeng et. al., 2018

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 9

Owlery

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