TPA_inf: Y box protein 4-like protein

Overview
NameTPA_inf: Y box protein 4-like protein (DAA34914.1)
Smed IDSMED30000951
Length (bp)1330
Neoblast Clusters

Zeng et. al., 2018




 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30000951

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
prepharyngeal regionSMED30000951h1SMcG0008270 SmedASXL_019822SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
testisSMED30000951h1SMcG0008270 BK007100smed_ncbi_20240424PMID:22074376
Chong et al., 2011
whole organism adult hermaphrodite fluorescence in situ hybridization evidence
spermatogoniumSMED30000951h1SMcG0008270 BK007100smed_ncbi_20240424PMID:22074376
Chong et al., 2011
whole organism adult hermaphrodite fluorescence in situ hybridization evidence
spermatocyteSMED30000951h1SMcG0008270 BK007100smed_ncbi_20240424PMID:22074376
Chong et al., 2011
whole organism adult hermaphrodite fluorescence in situ hybridization evidence
spermatidSMED30000951h1SMcG0008270 BK007100smed_ncbi_20240424PMID:22074376
Chong et al., 2011
whole organism adult hermaphrodite fluorescence in situ hybridization evidence
testisSMED30000951h1SMcG0008270 Contig5455_SE3GPL10652PMID:20844018
Wang et al., 2010
whole organism adult hermaphrodite colorimetric in situ hybridization evidence
early male germ cellSMED30000951h1SMcG0008270 Contig5455_SE3GPL10652PMID:20844018
Wang et al., 2010
whole organism asexual adult cDNA to DNA expression microarray evidence
testis primordiumSMED30000951h1SMcG0008270 Contig5455_SE3GPL10652PMID:20844018
Wang et al., 2010
whole organism juvenile stagecDNA to DNA expression microarray evidence
testis primordiumSMED30000951h1SMcG0008270 PL08004B2A05_SE3GPL10652PMID:20844018
Wang et al., 2010
whole organism juvenile stagecDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Homology
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Human
Match: YBX3 (Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428])

HSP 1 Score: 124.02 bits (310), Expect = 1.367e-31
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = 1
Query:   88 TEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
             EKK+LATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGPDG+PV+GS+YAAD
Sbjct:   82 AEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 173          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Human
Match: YBX3 (Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428])

HSP 1 Score: 123.635 bits (309), Expect = 7.996e-31
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = 1
Query:   88 TEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
             EKK+LATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGPDG+PV+GS+YAAD
Sbjct:   82 AEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 173          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Human
Match: YBX1 (Y-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8014])

HSP 1 Score: 121.324 bits (303), Expect = 2.091e-30
Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = 1
Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            +KK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PVQGSKYAAD
Sbjct:   51 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD 141          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Human
Match: YBX2 (Y-box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948])

HSP 1 Score: 110.153 bits (274), Expect = 3.873e-26
Identity = 68/107 (63.55%), Postives = 86/107 (80.37%), Query Frame = 1
Query:   52 IQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRH 372
            +  +PA  +    +K +LA ++ G VKWFNV++GYGFINRND +ED+FVHQTAI +NNPRK+ RSVGDGE VEFDVVEGEKG EA NVTGP G+PV+GS+YA ++R 
Sbjct:   73 VSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRK 179          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Human
Match: YBX2 (Y-box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948])

HSP 1 Score: 110.153 bits (274), Expect = 3.873e-26
Identity = 68/107 (63.55%), Postives = 86/107 (80.37%), Query Frame = 1
Query:   52 IQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRH 372
            +  +PA  +    +K +LA ++ G VKWFNV++GYGFINRND +ED+FVHQTAI +NNPRK+ RSVGDGE VEFDVVEGEKG EA NVTGP G+PV+GS+YA ++R 
Sbjct:   73 VSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRK 179          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Celegans
Match: cey-1 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:O62213])

HSP 1 Score: 117.472 bits (293), Expect = 1.568e-30
Identity = 69/95 (72.63%), Postives = 79/95 (83.16%), Query Frame = 1
Query:   82 HPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADK 366
             P +K + ATK+ G VKWFNVK+GYGFINR D  EDIFVHQTAI+ NNP K+ RS+GD EEV FD+VEG KGLEAA+VTGPDG PVQGSKYAAD+
Sbjct:   10 QPADKPVKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKYAADR 104          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Celegans
Match: cey-3 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91398])

HSP 1 Score: 74.7146 bits (182), Expect = 7.344e-15
Identity = 48/88 (54.55%), Postives = 66/88 (75.00%), Query Frame = 1
Query:   94 KKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKW-QRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKY 354
            K +L   + GKVKW++V   YGFI+R+D ++D+FVHQTAI K++  K+  R++ D EEV FD+V+G+ G EAANVTGP G+ V GSKY
Sbjct:   57 KIVLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKY 144          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Celegans
Match: cey-3 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91398])

HSP 1 Score: 74.7146 bits (182), Expect = 7.344e-15
Identity = 48/88 (54.55%), Postives = 66/88 (75.00%), Query Frame = 1
Query:   94 KKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKW-QRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKY 354
            K +L   + GKVKW++V   YGFI+R+D ++D+FVHQTAI K++  K+  R++ D EEV FD+V+G+ G EAANVTGP G+ V GSKY
Sbjct:   57 KIVLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKY 144          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Celegans
Match: cey-2 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91306])

HSP 1 Score: 71.633 bits (174), Expect = 7.899e-14
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 1
Query:   94 KKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRK-WQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKY 354
            K  + T + GKVKW++V   YGFI+RND ++DIFVHQTAI K+   K + R++GD EEV FD+VEG+ G EAANVTGP+G  V GS+Y
Sbjct:   59 KTAITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Celegans
Match: cey-4 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5EDV3])

HSP 1 Score: 70.4774 bits (171), Expect = 2.666e-13
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 1
Query:   94 KKILATKINGKVKWFNVKSGYGFINRN---DNQEDIFVHQTAILKNNPRK-WQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYA 357
            KK++ T + G VKWF+V+  YGF+ R+   D  ED FVHQTAI K++  K + R++ D E V FD+VEG KG EAANVTGPDG  V+GS++A
Sbjct:   82 KKVIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Fly
Match: yps (gene:FBgn0022959 transcript:FBtr0076027)

HSP 1 Score: 113.62 bits (283), Expect = 1.032e-27
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = 1
Query:   85 PTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKR 369
            P  K+++ATK+ G VKWFNVKSGYGFINRND +ED+FVHQ+AI +NNP+K  RSVGDGE VEFDVV GEKG EAANVTGP G PV+GS++AADKR
Sbjct:   52 PPTKEVIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKR 146          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Fly
Match: yps (gene:FBgn0022959 transcript:FBtr0305992)

HSP 1 Score: 113.235 bits (282), Expect = 1.051e-27
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = 1
Query:   85 PTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKR 369
            P  K+++ATK+ G VKWFNVKSGYGFINRND +ED+FVHQ+AI +NNP+K  RSVGDGE VEFDVV GEKG EAANVTGP G PV+GS++AADKR
Sbjct:   52 PPTKEVIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKR 146          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Fly
Match: lin-28 (gene:FBgn0035626 transcript:FBtr0077090)

HSP 1 Score: 51.6026 bits (122), Expect = 2.085e-7
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  121 GKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKY 354
            GK KWFNV  G+GF+  ND  +++FVHQ+ I  +      RS+G+ EEVEF+     +GLEA  V+   G   QGS Y
Sbjct:   41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGF----RSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTY 114          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 121.324 bits (303), Expect = 1.137e-30
Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = 1
Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            +KK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PVQGSKYAAD
Sbjct:   31 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD 121          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 121.324 bits (303), Expect = 1.137e-30
Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = 1
Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            +KK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PVQGSKYAAD
Sbjct:   31 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD 121          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 120.939 bits (302), Expect = 1.349e-30
Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = 1
Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            +KK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PVQGSKYAAD
Sbjct:   31 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD 121          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Xenopus
Match: hmgcs1 (3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:Xenbase;Acc:XB-GENE-942074])

HSP 1 Score: 128.257 bits (321), Expect = 4.451e-33
Identity = 75/95 (78.95%), Postives = 86/95 (90.53%), Query Frame = 1
Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 375
            EKK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PVQGSKYAAD+ H+
Sbjct:   29 EKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHF 123          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Xenopus
Match: ybx3 (Y-box binding protein 3 [Source:NCBI gene;Acc:548572])

HSP 1 Score: 118.627 bits (296), Expect = 3.221e-30
Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 1
Query:   94 KKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            +K+LATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVV GEKG EAANVTGP G PVQGS+YAAD
Sbjct:   29 RKVLATKVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEKGAEAANVTGPKGAPVQGSRYAAD 118          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Xenopus
Match: hmgcs1 (3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:Xenbase;Acc:XB-GENE-942074])

HSP 1 Score: 119.013 bits (297), Expect = 1.041e-29
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 1
Query:  100 ILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 375
             + TK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PVQGSKYAAD+ H+
Sbjct:   40 CVTTKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHF 131          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Mouse
Match: Ybx3 (Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670])

HSP 1 Score: 125.176 bits (313), Expect = 2.601e-32
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 1
Query:   49 DIQTSPAERSIHPT-----EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            D    PA  S  P      EKK+LATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGPDG+PV+GS+YAAD
Sbjct:   56 DAAPGPAPASSAPAGGEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 165          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Mouse
Match: Ybx3 (Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670])

HSP 1 Score: 124.79 bits (312), Expect = 1.604e-31
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 1
Query:   49 DIQTSPAERSIHPT-----EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            D    PA  S  P      EKK+LATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGPDG+PV+GS+YAAD
Sbjct:   56 DAAPGPAPASSAPAGGEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 165          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Mouse
Match: Ybx1 (Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146])

HSP 1 Score: 121.324 bits (303), Expect = 1.423e-30
Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = 1
Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            +KK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PVQGSKYAAD
Sbjct:   49 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD 139          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Mouse
Match: Ybx2 (Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372])

HSP 1 Score: 109.768 bits (273), Expect = 3.760e-26
Identity = 68/99 (68.69%), Postives = 83/99 (83.84%), Query Frame = 1
Query:   61 SPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYA 357
            +PA  +    +K +LA ++ G VKWFNV++GYGFINRND +ED+FVHQTAI +NNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PV+GS+YA
Sbjct:   77 TPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRYA 175          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Mouse
Match: Ybx2 (Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372])

HSP 1 Score: 107.071 bits (266), Expect = 9.690e-26
Identity = 66/87 (75.86%), Postives = 77/87 (88.51%), Query Frame = 1
Query:   97 KILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYA 357
            K LA ++ G VKWFNV++GYGFINRND +ED+FVHQTAI +NNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PV+GS+YA
Sbjct:   12 KALAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRYA 98          
BLAST of TPA_inf: Y box protein 4-like protein vs. UniProt/SwissProt
Match: sp|P41824|YBOXH_APLCA (Y-box factor homolog OS=Aplysia californica OX=6500 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.613e-31
Identity = 79/119 (66.39%), Postives = 96/119 (80.67%), Query Frame = 1
Query:   43 MADIQTSP--------AERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 375
            MAD +  P         E++    EKKI+A++++G VKWFNVKSGYGFINR+D +ED+FVHQTAI+KNNPRK+ RSVGDGE+VEFDVVEGEKG EAANVTGP+G  VQGSKYAAD+R +
Sbjct:    1 MADTEKQPEVEENQPDQEQNEEQKEKKIIASQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSKYAADRRRF 119          
BLAST of TPA_inf: Y box protein 4-like protein vs. UniProt/SwissProt
Match: sp|Q9JKB3|YBOX3_MOUSE (Y-box-binding protein 3 OS=Mus musculus OX=10090 GN=Ybx3 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.122e-30
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 1
Query:   49 DIQTSPAERSIHPT-----EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            D    PA  S  P      EKK+LATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGPDG+PV+GS+YAAD
Sbjct:   56 DAAPGPAPASSAPAGGEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 165          
BLAST of TPA_inf: Y box protein 4-like protein vs. UniProt/SwissProt
Match: sp|Q62764|YBOX3_RAT (Y-box-binding protein 3 OS=Rattus norvegicus OX=10116 GN=Ybx3 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.144e-30
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 1
Query:   49 DIQTSPAERSIHPT-----EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            D    PA  S  P      EKK+LATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGPDG+PV+GS+YAAD
Sbjct:   56 DAAPGPAPASSAPAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 165          
BLAST of TPA_inf: Y box protein 4-like protein vs. UniProt/SwissProt
Match: sp|P21573|YBOX1_XENLA (Y-box-binding protein 1 OS=Xenopus laevis OX=8355 GN=ybx1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.958e-30
Identity = 73/91 (80.22%), Postives = 84/91 (92.31%), Query Frame = 1
Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            +KK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP+G+PVQGSKYAAD
Sbjct:   29 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPEGVPVQGSKYAAD 119          
BLAST of TPA_inf: Y box protein 4-like protein vs. UniProt/SwissProt
Match: sp|P16989|YBOX3_HUMAN (Y-box-binding protein 3 OS=Homo sapiens OX=9606 GN=YBX3 PE=1 SV=4)

HSP 1 Score: 123.635 bits (309), Expect = 3.840e-30
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = 1
Query:   88 TEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
             EKK+LATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGPDG+PV+GS+YAAD
Sbjct:   82 AEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 173          
BLAST of TPA_inf: Y box protein 4-like protein vs. TrEMBL
Match: F9W2W0 (Y box protein 4-like protein OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 491.115 bits (1263), Expect = 6.412e-170
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 1
Query:   43 MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHYXXXXXXXXXXXXXXXXXXXLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTEXXXXXXXXXXXXXXXXXXXXXQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYXXXXXXXXXXXXXXXXXXXXXXXXXXNSYIRGYSPGPPNTRRYMDSRPGPVMNTYSDSGPIIPXXXXXXXXXXXXXPIMYHKINSGVSSRSTRGRQFGGGEXXXXXXXXXXXXXXXXXXXXTVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS 1176
            MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPGPPNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS
Sbjct:    1 MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPGPPNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS 378          
BLAST of TPA_inf: Y box protein 4-like protein vs. TrEMBL
Match: Q86FT3 (Y1 protein OS=Dugesia etrusca OX=47672 GN=Y1 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 1.038e-105
Identity = 250/275 (90.91%), Postives = 259/275 (94.18%), Query Frame = 1
Query:   43 MADIQTSPAERSIHPTEKKILA-----TKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHYXXXXXXXXXXXXXXXXXXXLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTEXXXXXXXXXXXXXXXXXXXXXQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYXXXXXXXXXXXXXXXXXXXXXXXXXXNSYIRGYSPGPPNTRRYMDSRPGPVMNTY 852
            MADIQTSP ERS+H TEKKILA     TKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGG+VRSL+NGPRGRSLSREMDST EDAGPEGDAVFGTERRRTLP RRRSYYPRP+PPPPQG YYMNRR +PSRDDYRE DEYENR M++GYRGGGVPRRRFIGGFGRGGHANGGSG N+YIRGYSPGPPN RRYMDSRPGPVMN +
Sbjct:    1 MADIQTSPTERSVHATEKKILAYDYLATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGKVRSLKNGPRGRSLSREMDSTTEDAGPEGDAVFGTERRRTLPIRRRSYYPRPMPPPPQGGYYMNRRPLPSRDDYRESDEYENRTMIMGYRGGGVPRRRFIGGFGRGGHANGGSGANTYIRGYSPGPPNARRYMDSRPGPVMNIF 275          
BLAST of TPA_inf: Y box protein 4-like protein vs. TrEMBL
Match: A0A4S2LJH5 (CSD_1 domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_006721 PE=4 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.148e-31
Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 1
Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 375
            EKK++AT+I G VKWFNVKSGYGFINR D +EDIFVHQ+AILKNNP KWQRSVGDGE+VEFDVV+G+KGLEA NVTGP G+PVQGSKYAADKR Y
Sbjct:   17 EKKVVATRITGVVKWFNVKSGYGFINRTDTKEDIFVHQSAILKNNPHKWQRSVGDGEDVEFDVVQGDKGLEATNVTGPHGVPVQGSKYAADKRRY 111          
BLAST of TPA_inf: Y box protein 4-like protein vs. TrEMBL
Match: A0A1S8X552 (Cold-shock DNA-binding domain protein OS=Opisthorchis viverrini OX=6198 GN=X801_02330 PE=4 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.578e-31
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 1
Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 375
            EKK++AT+I G VKWFNVKSGYGFINR D +EDIFVHQ+AILKNNP KWQRSVGDGEEVEFDVV+G+KGLEA NVTGP G+PVQGSKYAADKR Y
Sbjct:   17 EKKVVATRITGVVKWFNVKSGYGFINRTDTKEDIFVHQSAILKNNPHKWQRSVGDGEEVEFDVVQGDKGLEATNVTGPHGVPVQGSKYAADKRRY 111          
BLAST of TPA_inf: Y box protein 4-like protein vs. TrEMBL
Match: A0A074ZT23 (CSD_1 domain-containing protein OS=Opisthorchis viverrini OX=6198 GN=T265_06248 PE=4 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.608e-31
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 1
Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHY 375
            EKK++AT+I G VKWFNVKSGYGFINR D +EDIFVHQ+AILKNNP KWQRSVGDGEEVEFDVV+G+KGLEA NVTGP G+PVQGSKYAADKR Y
Sbjct:   17 EKKVVATRITGVVKWFNVKSGYGFINRTDTKEDIFVHQSAILKNNPHKWQRSVGDGEEVEFDVVQGDKGLEATNVTGPHGVPVQGSKYAADKRRY 111          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Cavefish
Match: ybx1 (Y-box binding protein 1 [Source:NCBI gene;Acc:103040011])

HSP 1 Score: 122.094 bits (305), Expect = 5.054e-31
Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = 1
Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAAD 363
            +KK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+PVQGSKYAAD
Sbjct:   32 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD 122          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Cavefish
Match: YBX2 (Y-box-binding protein 2-A-like [Source:NCBI gene;Acc:103036193])

HSP 1 Score: 115.931 bits (289), Expect = 7.149e-29
Identity = 73/110 (66.36%), Postives = 89/110 (80.91%), Query Frame = 1
Query:   49 DIQTSP---AE-RSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADK 366
            D+Q +P   AE +   P E+K++AT + G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVE  KG EAANVTGP G+PV+GS+YA +K
Sbjct:    5 DVQEAPPSAAETQEDLPPERKVIATLVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEIVEFDVVEATKGSEAANVTGPGGVPVKGSRYAPNK 114          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Cavefish
Match: YBX2 (Y-box-binding protein 2-A-like [Source:NCBI gene;Acc:103036193])

HSP 1 Score: 110.538 bits (275), Expect = 7.814e-27
Identity = 67/93 (72.04%), Postives = 78/93 (83.87%), Query Frame = 1
Query:   88 TEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADK 366
            T   I+AT + G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVE  KG EAANVTGP G+PV+GS+YA +K
Sbjct:   15 TSVSIVATLVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEIVEFDVVEATKGSEAANVTGPGGVPVKGSRYAPNK 107          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Nematostella
Match: EDO41469 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S475])

HSP 1 Score: 117.857 bits (294), Expect = 2.188e-32
Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 1
Query:  100 ILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKR 369
            I ATK+ G VKWFNVK+GYGFINR+DN+EDIFVHQTAI KNNP+K+ RSVGDGE VEF+VV G KGLEA+NVTGPDG PVQGSKYA D+R
Sbjct:    3 IAATKVTGTVKWFNVKNGYGFINRDDNKEDIFVHQTAIAKNNPKKYLRSVGDGEVVEFNVVSGTKGLEASNVTGPDGEPVQGSKYAPDRR 92          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Nematostella
Match: EDO44703 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RV03])

HSP 1 Score: 52.7582 bits (125), Expect = 2.267e-7
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1
Query:  115 INGKVKWFNVKSGYGFINRNDNQEDIFVHQTAI 213
              G VKWFN+  G+GFI R+D  ED+FVHQ+AI
Sbjct:  483 CTGSVKWFNLIKGFGFITRDDGGEDVFVHQSAI 515          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Medaka
Match: ybx1 (Y-box binding protein 1 [Source:NCBI gene;Acc:100049221])

HSP 1 Score: 118.627 bits (296), Expect = 6.478e-30
Identity = 72/92 (78.26%), Postives = 83/92 (90.22%), Query Frame = 1
Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADK 366
            +KK++ATK+ G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDVVEGEKG EAANVTGP G+ VQGSKYAAD+
Sbjct:   33 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVAVQGSKYAADR 124          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Medaka
Match: ENSORLT00000007875.2 (Y-box binding protein 2 [Source:NCBI gene;Acc:100049372])

HSP 1 Score: 115.931 bits (289), Expect = 3.400e-28
Identity = 67/93 (72.04%), Postives = 81/93 (87.10%), Query Frame = 1
Query:   88 TEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADK 366
            +E+K++AT + G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDV+E  KG EAANVTGP GIPV+GS+YA +K
Sbjct:  103 SERKVIATAVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGPGGIPVKGSRYAPNK 195          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Medaka
Match: ENSORLT00000007880.2 (Y-box binding protein 2 [Source:NCBI gene;Acc:100049372])

HSP 1 Score: 115.931 bits (289), Expect = 3.852e-28
Identity = 67/93 (72.04%), Postives = 81/93 (87.10%), Query Frame = 1
Query:   88 TEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADK 366
            +E+K++AT + G VKWFNV++GYGFINRND +ED+FVHQTAI KNNPRK+ RSVGDGE VEFDV+E  KG EAANVTGP GIPV+GS+YA +K
Sbjct:  103 SERKVIATAVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGPGGIPVKGSRYAPNK 195          
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Medaka
Match: ENSORLT00000029434.1 (pep primary_assembly:ASM223467v1:3:36782961:36787024:1 gene:ENSORLG00000026367.1 transcript:ENSORLT00000029434.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 64.3142 bits (155), Expect = 2.013e-12
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1
Query:   88 TEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRS 246
            +++K++ T +   VKWF+V +GYG INRN+ +ED+FV QTAI  NNPR + RS
Sbjct:   28 SKRKVITTGVQDTVKWFHVCNGYGLINRNNTKEDVFVPQTAIKNNNPRNFLRS 80          
BLAST of TPA_inf: Y box protein 4-like protein vs. Planmine SMEST
Match: SMESG000076962.1 (SMESG000076962.1)

HSP 1 Score: 488.034 bits (1255), Expect = 2.829e-172
Identity = 377/378 (99.74%), Postives = 377/378 (99.74%), Query Frame = 1
Query:   43 MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHYXXXXXXXXXXXXXXXXXXXLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTEXXXXXXXXXXXXXXXXXXXXXQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYXXXXXXXXXXXXXXXXXXXXXXXXXXNSYIRGYSPGPPNTRRYMDSRPGPVMNTYSDSGPIIPXXXXXXXXXXXXXPIMYHKINSGVSSRSTRGRQFGGGEXXXXXXXXXXXXXXXXXXXXTVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS 1176
            MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPG PNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS
Sbjct:    1 MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPGSPNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS 378          
BLAST of TPA_inf: Y box protein 4-like protein vs. Planmine SMEST
Match: SMESG000076962.1 (SMESG000076962.1)

HSP 1 Score: 481.871 bits (1239), Expect = 8.271e-170
Identity = 376/378 (99.47%), Postives = 376/378 (99.47%), Query Frame = 1
Query:   43 MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHYXXXXXXXXXXXXXXXXXXXLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTEXXXXXXXXXXXXXXXXXXXXXQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYXXXXXXXXXXXXXXXXXXXXXXXXXXNSYIRGYSPGPPNTRRYMDSRPGPVMNTYSDSGPIIPXXXXXXXXXXXXXPIMYHKINSGVSSRSTRGRQFGGGEXXXXXXXXXXXXXXXXXXXXTVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS 1176
            MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPG PNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAPSLDAESNQSDDDAIQ TSELNLEEIRAS
Sbjct:    1 MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPGSPNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAPSLDAESNQSDDDAIQ-TSELNLEEIRAS 377          
BLAST of TPA_inf: Y box protein 4-like protein vs. Planmine SMEST
Match: SMESG000076962.1 (SMESG000076962.1)

HSP 1 Score: 481.485 bits (1238), Expect = 1.435e-169
Identity = 377/383 (98.43%), Postives = 377/383 (98.43%), Query Frame = 1
Query:   43 MADIQTSPAERSIHPTEKKILA-----TKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHYXXXXXXXXXXXXXXXXXXXLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTEXXXXXXXXXXXXXXXXXXXXXQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYXXXXXXXXXXXXXXXXXXXXXXXXXXNSYIRGYSPGPPNTRRYMDSRPGPVMNTYSDSGPIIPXXXXXXXXXXXXXPIMYHKINSGVSSRSTRGRQFGGGEXXXXXXXXXXXXXXXXXXXXTVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS 1176
            MADIQTSPAERSIHPTEKKILA     TKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPG PNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS
Sbjct:    1 MADIQTSPAERSIHPTEKKILAYDYLATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPGSPNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAPSLDAESNQSDDDAIQKTSELNLEEIRAS 383          
BLAST of TPA_inf: Y box protein 4-like protein vs. Planmine SMEST
Match: SMESG000076962.1 (SMESG000076962.1)

HSP 1 Score: 413.69 bits (1062), Expect = 4.221e-143
Identity = 315/316 (99.68%), Postives = 315/316 (99.68%), Query Frame = 1
Query:   43 MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYAADKRHYXXXXXXXXXXXXXXXXXXXLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTEXXXXXXXXXXXXXXXXXXXXXQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYXXXXXXXXXXXXXXXXXXXXXXXXXXNSYIRGYSPGPPNTRRYMDSRPGPVMNTYSDSGPIIPXXXXXXXXXXXXXPIMYHKINSGVSSRSTRGRQFGGGE 990
            MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPG PNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGE
Sbjct:    1 MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNEDAGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDYREPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSPGSPNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINSGVSSRSTRGRQFGGGE 316          
BLAST of TPA_inf: Y box protein 4-like protein vs. Planmine SMEST
Match: SMESG000032180.1 (SMESG000032180.1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.297e-20
Identity = 55/89 (61.80%), Postives = 75/89 (84.27%), Query Frame = 1
Query:   91 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSXXXXXXXXXXXXXXXXXLEAANVTGPDGIPVQGSKYA 357
            +K++L T+I GKVKWFNVK GYGF+ R+DN EDIF+HQ+AI+K+NP   ++SVG+GEE++FD+V+G KG EAANV+  DG  V+GS+YA
Sbjct:   21 QKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 109          
The following BLAST results are available for this feature:
BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
YBX31.367e-3180.43Y-box binding protein 3 [Source:HGNC Symbol;Acc:HG... [more]
YBX37.996e-3180.43Y-box binding protein 3 [Source:HGNC Symbol;Acc:HG... [more]
YBX12.091e-3080.22Y-box binding protein 1 [Source:HGNC Symbol;Acc:HG... [more]
YBX23.873e-2663.55Y-box binding protein 2 [Source:HGNC Symbol;Acc:HG... [more]
YBX23.873e-2663.55Y-box binding protein 2 [Source:HGNC Symbol;Acc:HG... [more]
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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
cey-11.568e-3072.63C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:O62... [more]
cey-37.344e-1554.55C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91... [more]
cey-37.344e-1554.55C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91... [more]
cey-27.899e-1457.95C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91... [more]
cey-42.666e-1354.35C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5E... [more]
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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
yps1.032e-2773.68gene:FBgn0022959 transcript:FBtr0076027[more]
yps1.051e-2773.68gene:FBgn0022959 transcript:FBtr0305992[more]
lin-282.085e-744.87gene:FBgn0035626 transcript:FBtr0077090[more]
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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
ybx11.137e-3080.22Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-... [more]
ybx11.137e-3080.22Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-... [more]
ybx11.349e-3080.22Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-... [more]
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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
hmgcs14.451e-3378.953-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:... [more]
ybx33.221e-3078.89Y-box binding protein 3 [Source:NCBI gene;Acc:5485... [more]
hmgcs11.041e-2977.173-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:... [more]
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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Ybx32.601e-3271.82Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670... [more]
Ybx31.604e-3171.82Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670... [more]
Ybx11.423e-3080.22Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146][more]
Ybx23.760e-2668.69Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372... [more]
Ybx29.690e-2675.86Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372... [more]
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BLAST of TPA_inf: Y box protein 4-like protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P41824|YBOXH_APLCA2.613e-3166.39Y-box factor homolog OS=Aplysia californica OX=650... [more]
sp|Q9JKB3|YBOX3_MOUSE1.122e-3071.82Y-box-binding protein 3 OS=Mus musculus OX=10090 G... [more]
sp|Q62764|YBOX3_RAT1.144e-3071.82Y-box-binding protein 3 OS=Rattus norvegicus OX=10... [more]
sp|P21573|YBOX1_XENLA1.958e-3080.22Y-box-binding protein 1 OS=Xenopus laevis OX=8355 ... [more]
sp|P16989|YBOX3_HUMAN3.840e-3080.43Y-box-binding protein 3 OS=Homo sapiens OX=9606 GN... [more]
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BLAST of TPA_inf: Y box protein 4-like protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
F9W2W06.412e-170100.00Y box protein 4-like protein OS=Schmidtea mediterr... [more]
Q86FT31.038e-10590.91Y1 protein OS=Dugesia etrusca OX=47672 GN=Y1 PE=2 ... [more]
A0A4S2LJH52.148e-3182.11CSD_1 domain-containing protein OS=Opisthorchis fe... [more]
A0A1S8X5523.578e-3183.16Cold-shock DNA-binding domain protein OS=Opisthorc... [more]
A0A074ZT233.608e-3183.16CSD_1 domain-containing protein OS=Opisthorchis vi... [more]
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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
ybx15.054e-3180.22Y-box binding protein 1 [Source:NCBI gene;Acc:1030... [more]
YBX27.149e-2966.36Y-box-binding protein 2-A-like [Source:NCBI gene;A... [more]
YBX27.814e-2772.04Y-box-binding protein 2-A-like [Source:NCBI gene;A... [more]
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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO414692.188e-3278.89Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO447032.267e-760.61Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of TPA_inf: Y box protein 4-like protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4
Match NameE-valueIdentityDescription
ybx16.478e-3078.26Y-box binding protein 1 [Source:NCBI gene;Acc:1000... [more]
ENSORLT00000007875.23.400e-2872.04Y-box binding protein 2 [Source:NCBI gene;Acc:1000... [more]
ENSORLT00000007880.23.852e-2872.04Y-box binding protein 2 [Source:NCBI gene;Acc:1000... [more]
ENSORLT00000029434.12.013e-1252.83pep primary_assembly:ASM223467v1:3:36782961:367870... [more]
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BLAST of TPA_inf: Y box protein 4-like protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000076962.12.829e-17299.74SMESG000076962.1[more]
SMESG000076962.18.271e-17099.47SMESG000076962.1[more]
SMESG000076962.11.435e-16998.43SMESG000076962.1[more]
SMESG000076962.14.221e-14399.68SMESG000076962.1[more]
SMESG000032180.11.297e-2061.80SMESG000032180.1[more]
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Cross References
External references for this transcript
DatabaseAccession
SmedGD GBrowseSMED30000951
GenBankDAA34914.1
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30000951 ID=SMED30000951|Name=TPA_inf: Y box protein 4-like protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1330bp
ATTCATTGGATAGGAAGCTAGGACAAAACTGAAGCTTAATTTATGGCAGA
TATACAAACATCGCCAGCAGAAAGATCTATTCATCCTACTGAGAAAAAGA
TCTTAGCAACCAAAATTAATGGCAAGGTTAAATGGTTCAATGTGAAAAGC
GGCTATGGATTCATCAATAGAAATGACAATCAGGAAGACATTTTTGTTCA
TCAGACTGCAATTTTAAAAAACAATCCTCGTAAATGGCAAAGATCTGTTG
GAGATGGAGAAGAAGTTGAATTCGATGTAGTTGAAGGAGAAAAGGGATTA
GAAGCTGCAAATGTTACGGGTCCTGATGGGATACCTGTACAGGGAAGTAA
ATACGCAGCGGATAAAAGACATTATCGCTCAAGATCTTTTGGCCGAGCTG
TTGGTAGGGGATTCGGTGGTCGAGTAAGATCCCTTAGAAATGGTCCAAGG
GGTAGATCGTTATCAAGAGAAATGGATTCGACAAATGAAGATGCCGGACC
AGAAGGAGATGCTGTATTTGGGACAGAAAGAAGACGAACCTTACCTAGTC
GAAGAAGATCTTATTATCCACGTCCTATACCTCCACCTCCCCAAGGGAGT
TATTATATGAATAGAAGACATATACCTTCCCGGGATGATTATCGTGAACC
GGATGAATATGAAAATCGTCCTATGCTTTTAGGTTACCGTGGTGGTGGAG
TTCCTAGACGAAGATTTATTGGTGGATTTGGTCGTGGCGGTCATGCTAAT
GGAGGTTCAGGAGGAAATTCATACATAAGAGGCTATTCTCCAGGACCTCC
TAATACACGGAGATATATGGATAGTAGACCAGGCCCAGTTATGAACACTT
ATTCAGATTCAGGGCCAATAATTCCAAGAGGCACTAGTCGATTTAGACGG
GGCAGAGGAGGACGTCCAATAATGTATCACAAAATTAACAGTGGAGTAAG
TAGCAGATCAACTAGAGGACGACAATTTGGAGGGGGTGAACGCAGAAATT
GGAGAGATTATAATTCTTATAATAACAGAAACAATGAAGATAACAACGAG
ACAGTATCGGATGAAAAGAGAGCAACAGGTGGCCGAGCCCCAAGCTTGGA
TGCCGAAAGCAACCAGAGCGATGACGATGCTATCCAGAAGACGTCTGAGT
TAAATTTAGAGGAAATAAGAGCATCTTGAATCTTTTTTTTGATGAAAATT
GATATAATATTGTTATTTTTGTGTTATCTCATTTATATCCTAGCTATGTT
AGTTAAATGTTTCAAACCTTCTGTTGTACTAACCAGATACTAAGTTCTAT
CTATTTACAAACAAAACTTGGAGGCCTTTG
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protein sequence of SMED30000951-orf-1

>SMED30000951-orf-1 ID=SMED30000951-orf-1|Name=SMED30000951-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=379bp
MADIQTSPAERSIHPTEKKILATKINGKVKWFNVKSGYGFINRNDNQEDI
FVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQ
GSKYAADKRHYRSRSFGRAVGRGFGGRVRSLRNGPRGRSLSREMDSTNED
AGPEGDAVFGTERRRTLPSRRRSYYPRPIPPPPQGSYYMNRRHIPSRDDY
REPDEYENRPMLLGYRGGGVPRRRFIGGFGRGGHANGGSGGNSYIRGYSP
GPPNTRRYMDSRPGPVMNTYSDSGPIIPRGTSRFRRGRGGRPIMYHKINS
GVSSRSTRGRQFGGGERRNWRDYNSYNNRNNEDNNETVSDEKRATGGRAP
SLDAESNQSDDDAIQKTSELNLEEIRAS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000208testis
PLANA:0000220spermatogonium
PLANA:0000221spermatocyte
PLANA:0000222spermatid
PLANA:0000419prepharyngeal region
PLANA:0002030early male germ cell
PLANA:0003304testis primordium
Vocabulary: INTERPRO
TermDefinition
IPR002059CSP_DNA-bd
IPR011129CSD
IPR012340NA-bd_OB-fold
IPR019844CSD_1
Vocabulary: biological process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
GO:0003676nucleic acid binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002059Cold-shock protein, DNA-bindingPRINTSPR00050COLDSHOCKcoord: 67..85
score: 57.36
coord: 27..42
score: 69.66
coord: 48..57
score: 68.88
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 26..93
e-value: 1.9E-25
score: 88.5
IPR002059Cold-shock protein, DNA-bindingCDDcd04458CSP_CDScoord: 25..93
e-value: 2.52592E-23
score: 89.9454
IPR011129Cold shock domainSMARTSM00357csp_8coord: 26..94
e-value: 3.2E-22
score: 89.8
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 18..106
e-value: 1.0E-28
score: 101.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 359..378
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 301..378
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 334..348
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..183
NoneNo IPR availablePANTHERPTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINScoord: 14..145
NoneNo IPR availablePANTHERPTHR11544:SF122NUCLEASE-SENSITIVE ELEMENT-BINDING PROTEIN 1coord: 14..145
NoneNo IPR availablePROSITEPS51857CSD_2coord: 24..93
score: 28.996
IPR019844Cold-shock (CSD) domainPROSITEPS00352CSD_1coord: 38..57
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 22..93