G_PROTEIN_RECEP_F1_2 domain-containing protein

Overview
NameG_PROTEIN_RECEP_F1_2 domain-containing protein
Smed IDSMED30000873
Length (bp)1169
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30000873) t-SNE clustered cells

Violin plots show distribution of expression levels for G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30000873) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30000873) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30000873) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30000873

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30000873SMESG000023730.1 SmedASXL_007349SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30000873SMESG000023730.1 dd_Smed_v4_25969_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30000873SMESG000023730.1 dd_Smed_v4_25969_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30000873SMESG000023730.1 dd_Smed_v4_25969_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30000873SMESG000023730.1 Contig24042newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30000873SMESG000023730.1 dd_Smed_v6_25969_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Celegans
Match: frpr-12 (FMRFamide Peptide Receptor family [Source:UniProtKB/TrEMBL;Acc:Q9GYH3])

HSP 1 Score: 53.1434 bits (126), Expect = 1.854e-7
Identity = 62/244 (25.41%), Postives = 107/244 (43.85%), Query Frame = 2
Query:  371 KFIDYPSINQ-------FSKLFWVFILQIGTFSVASGLICRNWTILHLAIYRFDSICRPLNTKKIYTETSTYKLLWITYILAAVIAF--PRTFEYKATFCEG--NLVLKPSLLNYDWYAYGYQGSLIFIIQTAAPVVCTSILSISVMRAILKVKRFRKSF-SKTIKTKNNAISGDALMIFICLAFFLFETPSFFSKALQSYLMRNNKIIEDVLLATVANLLVYLDSVINIFVYILSNPVFRKKL 1066
            KF  +P  N+       FS    V+I   G  +   G     + I+ +A+ R+ ++CRPL  +   T+ +T + +   YI+A  I+F  PR  E+ A    G  N+ L  S  N  WY Y Y G          P    S+ +I V++ + K    RK   ++  K K        ++I      F   T  F +   ++Y      +I   ++  ++NLL+ + S   +F+Y++ +  +RK L
Sbjct:  112 KFPFFPGYNKIGSAHTIFSAFCLVYIYPFGCMAKMIG----QYIIVLIAVERWFAVCRPLQVQVWCTQKNTIRAML--YIIAISISFNAPRFLEFTADLSTGVVNMGLSHS-ANNTWYFYLYYGIRSIFFDALIPFAIISVTNIQVIQQLHKSNEERKLLTTQQQKEKRTTTMLLVMVILYATCHFFNTTLKFINMVSKTYAQFRFPVIR--VIHHISNLLLVIYSASTVFIYLIFSTKYRKVL 346          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Celegans
Match: frpr-11 (FMRFamide Peptide Receptor family [Source:UniProtKB/TrEMBL;Acc:Q9GYH2])

HSP 1 Score: 50.447 bits (119), Expect = 1.312e-6
Identity = 55/235 (23.40%), Postives = 106/235 (45.11%), Query Frame = 2
Query:  374 FIDYPSINQFSKLFWVFILQIGTFSVASGLICRNWTILHLAIYRFDSICRPLNTKKIYTETSTYKLLWITYILAAVIAF--PRTFEYKATFCEGNLVLKPSLLNY-DWYAYGYQGSLIFIIQTAAPVVCTSILSISVMRAILKVKRFRKSFSKTIKTKNNAISGDALMIFI-CLAFFLFETPSFFSKALQSYLMRNNKIIEDVLLATVANLLVYLDSVINIFVYILSNPVFRKKL 1066
            F  Y  I     +F  F L      +  G +   + I+ +++ R+ ++CRPL  +   T+ +T + +  T I+A  I F  PR FE+KA    G +    + ++  +WY Y Y G    I     P    ++ +I V++ + K    RK  +   +  N   +   +MIF+  +  FL  +  F +    +Y+     I +  ++  ++N+L+   S    F+Y++ +  +R  L
Sbjct:   99 FPGYHEIGSVHTIFSAFCLIYFYPLMCMGKMMGQYIIVLISVERWFAVCRPLQVQIWCTQKNTIRAM--TCIIAISILFNAPRFFEFKANLITGVIGFGLAHISKNEWYFYLYYGIRAIIFDALIPFSIIAVTNIQVIQQLRKSNEERKLMTTQQQKDNKTTTMLLVMIFMYAICHFLCTSVKFINLFSHNYVQFQFVIFK--IIHHISNVLLVFYSASTFFIYLIFSEKYRNVL 329          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A193KUR7 (GCR101 OS=Schmidtea mediterranea OX=79327 GN=gcr101 PE=2 SV=1)

HSP 1 Score: 422.55 bits (1085), Expect = 4.039e-144
Identity = 219/348 (62.93%), Postives = 274/348 (78.74%), Query Frame = 2
Query:   98 MDDINCSYPLETVGNKSDESDENLAAFALRIYNFHNYALLVIPIISIIFNGFCLFIFFDXXXXXXXXXXXXXXXXATEIVFNISGFLYSVTKFIDYPSINQFSKLFWVFILQIGTFSVASGLICRNWTILHLAIYRFDSICRPLNTKKIYTETSTYKLLWITYILAAVIAFPRTFEYKATFCEGNLVLKPSLLNYDWYAYGYQGSLIFIIQTAAPVVCTSILSISVMRAILKVKRFRKSFSKTIKTKNNAISGDALMIFICLAFFLFETPSFFSKALQSYLMRNNKIIEDVLLATVANLLVYLDSVINIFVYILSNPVFRKKLKQIFHFKAFNLKEYPTEATALERRE 1141
            M+  NCS  LET  N ++ S    A+ +L +Y FHN+ALL++PI+S++ NGFCLFIFFDKIW+KS LSILLKYLSATEI FN SGF+ ++TKFIDYPSI  FSKLFWVF+LQ+GTFSV++ LICRNWTILHLA +RF+SICRPL+++K+YT   + ++LW+TY+LA + AFPRTFEY+ +FC+G L L P L+ Y WY YGYQGSLIFIIQTAAPV  TS+LS  VM+AI K+K+FR+S SK    K+NA+SGD LMIFIC AFF+ E PSFFSK L+SYLM++ K  ED+LLAT+ NLLVYLDSVINIFVYI+SNP FR++ K +F  K     +     TAL + E
Sbjct:    1 MEIENCSDILETSNNAANVS----ASLSLLLYRFHNHALLILPILSMVLNGFCLFIFFDKIWRKSTLSILLKYLSATEIAFNFSGFICTITKFIDYPSIGYFSKLFWVFVLQVGTFSVSTALICRNWTILHLAAFRFESICRPLSSRKLYTNKYSPRVLWLTYVLAGIFAFPRTFEYEPSFCKGELSLNPGLIKYHWYEYGYQGSLIFIIQTAAPVAITSVLSFGVMKAIFKMKKFRQSCSKKFHKKHNAVSGDFLMIFICFAFFILEIPSFFSKVLKSYLMKHQKFTEDILLATMGNLLVYLDSVINIFVYIISNPTFRERSKNLFQPKRDLKSDSKIGKTALSKME 344          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A095AUU7 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Schistosoma haematobium OX=6185 GN=MS3_06666 PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 5.702e-38
Identity = 91/257 (35.41%), Postives = 135/257 (52.53%), Query Frame = 2
Query:  422 FILQIGTFSVASGLICRNWTILHLAIYRFDSICRPLNTKKIYTETSTYKLLWITYILAAVIAFPRTFEYKATFC--EGNLVLK-PSLLNYDWYAYGYQGSLIFIIQTAAPVVCTSILSISVMRAILKVKRFRKSFS----------KTIKTKNN-------------------------------AISGDALMIFICLAFFLFETPSFFSKALQSYLMRNNKIIEDVLLATVANLLVYLDSVINIFVYILSNPVFRK 1060
            FI  I +  + +  I RNW+++ LA YR+D ICRP+ T   ++      +L I + LA +I  PR FE     C   GN+    P L+NY  Y   Y G ++FI+Q+  PV+C  +LS  V+R I K ++F +             +T++ +NN                               A SGD LM  +C+ FF+ ETP+FFSK L  YL ++  +I D+ L+ +ANLL+YLDS +N F+Y+ SNP+FRK
Sbjct:  154 FITTISSRFLVAFQISRNWSVVLLAAYRYDQICRPIGTSSAFSRERIRYILIIIFFLACLIVIPRIFESGIVVCYISGNVSKDYPLLINYKLYQILYLGLVMFIVQSGGPVICVCVLSAFVIRIIAKRRKFHREKEQRSARNLLRRQTMEIENNQSNLKNNIIIDNNNLLQRNSNGLTKELTERPAPSGDKLMFAVCITFFILETPAFFSKILNPYLEQDYPLI-DLTLSVIANLLIYLDSTLNAFIYMASNPLFRK 409          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A0R3SGW5 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS4169 PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.252e-38
Identity = 114/335 (34.03%), Postives = 171/335 (51.04%), Query Frame = 2
Query:  185 RIYNFHNYALLVIPIISIIFNGFCLFIFFDXXXXXXXXXXXXXXXXATEIVFNISGFLYSV--------TKFIDYPSINQFSKLFWVFILQIGTFSVASGL---------ICRNWTILHLAIYRFDSICRPLNTKKIYTETSTYKLLWITYILAAVIAFPRTFEYKATFCEGNLVL---KPSLLNYDWYAYGYQGSLIFIIQTAAPVVCTSILSISVMRAILKVKRFRKSFSKTI-----KTKNNA---------------ISGDALMIFICLAFFLFETPSFFSKALQSYLMRNNKIIEDVLLATVANLLVYLDSVINIFVYILSNPVFRKKLK 1069
             I+  +   +LVI  I+++ NG  L IF  ++WK S  S +LK LS  EI F  S FL+++        T+  +Y + N   K   V    +   +V+  +         I RNW+++ LA YR+D+ICR L T   +       ++  T +L+ + A PR FE K+  C   +++   +P L     Y   Y G   FI+Q+  PV+C  ILS  V+R I   ++FRK   +T+     K ++N+                SGD LM+ +C  FF+ ETP+FFSK L SY   N   + DV ++ +AN L+YLDS  N+FVY+ SNP FR   K
Sbjct:   31 EIFQIYKILVLVIAPINVLLNGISLKIFGHRLWKNSSTSAILKSLSVFEICFGSSLFLHTINSKVLETYTRLDNYTTANLTEKERMVNAKLVAGMTVSQQILSGFLFAFQISRNWSVVLLAAYRYDAICRKLGTVSSFPRERIPWIMTTTMVLSGLFALPRLFEIKSFICIPTVMIYQEEPLLAGNLMYQLLYLGIGTFIVQSGGPVLCVCILSFFVIRKIALRRKFRKQNQRTVFIAANKNEDNSGSAQQTATKVVERKLPSGDKLMLALCFMFFILETPAFFSKILSSYTSTNYPTL-DVYISVIANFLIYLDSTANVFVYMGSNPTFRTVAK 364          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A3Q0KV19 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.196e-37
Identity = 119/380 (31.32%), Postives = 186/380 (48.95%), Query Frame = 2
Query:  140 NKSDESDENLAAFALRIYNFHNYALLVIPIISIIFNGFCLFIFFDXXXXXXXXXXXXXXXXATEIVFNISGFLYSV---------------TKFIDYPSINQ---------FSKLFWVFILQIGTFSVASGLICRNWTILHLAIYRFDSICRPLNTKKIYTETSTYKLLWITYILAAVIAFPRTFEYKATFC--EGNLVLK-PSLLNYDWYAYGYQGSLIFIIQTAAPVVCTSILSISVMRAILKVKRFRKSFS----------KTIKTKNN--------------------------------AISGDALMIFICLAFFLFETPSFFSKALQSYLMRNNKIIEDVLLATVANLLVYLDSVINIFVYILSNPVFRKKLKQ 1072
            NKS    +  +     +++F+    L++  ++ I NG C+ IF    WKKSI+S +LK LS  E+   +S F++++               T    YP  N+            +F  FI+ I +  +    I RNW+++ LA YR+D ICRP+ +   +       +L I + LA +I  PR FE     C   GN+    P L+NY  Y   Y G ++FI+Q+  PV+C  +LS  V+R I K ++F +             +T++ +NN                                A SGD LM  +C+ FF+ ETP+FFSK L  YL ++  +I D+ L+ +ANLL+YLDS +N F+Y+ SNP+FRK  ++
Sbjct:   22 NKSSTCTQMESLPVSGLFSFYRAIGLLLGPLNTILNGLCVHIFNHSSWKKSIMSRILKGLSIIELGMGLSLFIHALIFSQNSTTTSHLHQNTTNSIYPYHNEQDTIQTNAYIKTIFSFFIMTISSRFLVVFQISRNWSVVLLAAYRYDQICRPIGSPSAFPRERIRYILIIIFFLACLIVIPRIFESGIVVCYISGNVSKDYPLLINYKLYQILYLGLVMFIVQSGGPVICVCVLSAFVIRIIAKRRKFHREKEQRSARNLLRRQTMEIENNQSNLKNNIINNYNNNPLKRNSNGLTKELTERPAPSGDKLMFAVCITFFILETPAFFSKILNPYLEQDYPLI-DLTLSVIANLLIYLDSTLNAFIYMASNPLFRKIARE 400          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A183P9C9 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS10965 PE=4 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.282e-37
Identity = 91/257 (35.41%), Postives = 134/257 (52.14%), Query Frame = 2
Query:  422 FILQIGTFSVASGLICRNWTILHLAIYRFDSICRPLNTKKIYTETSTYKLLWITYILAAVIAFPRTFEYKATFC--EGNLVLK-PSLLNYDWYAYGYQGSLIFIIQTAAPVVCTSILSISVMRAILKVKRFRKSFS----------KTIKTKNN-------------------------------AISGDALMIFICLAFFLFETPSFFSKALQSYLMRNNKIIEDVLLATVANLLVYLDSVINIFVYILSNPVFRK 1060
            FI  I +  + +  I RNW+++ LA YR+D ICRP+ T   +       +L I + LA +I  PR FE     C   GN+    P L+NY  Y   Y G ++FI+Q+  PV+C  +LS  V+R I K ++F +             +T++ +NN                               A SGD LM  +C+ FF+ ETP+FFSK L  YL ++  +I D+ L+ +ANLL+YLDS +N F+Y+ SNP+FRK
Sbjct:  154 FITTISSRFLVAFQISRNWSVVLLAAYRYDQICRPIGTSSAFPRERIRYILIIIFFLACLIVIPRIFESGIVVCYISGNVSKDYPLLINYKLYQILYLGLVMFIVQSGGPVICVCVLSAFVIRIIAKRRKFHREKEQRSARNLLRRQTMEIENNQSNLKNNTNNNNTNFLQRNSNGLTKELTERPAPSGDKLMFAVCITFFILETPAFFSKILNPYLEQDYPLI-DLTLSVIANLLIYLDSTLNAFIYMASNPLFRK 409          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000023730.1 (SMESG000023730.1)

HSP 1 Score: 688.337 bits (1775), Expect = 0.000e+0
Identity = 359/359 (100.00%), Postives = 359/359 (100.00%), Query Frame = 2
Query:   86 IKQLMDDINCSYPLETVGNKSDESDENLAAFALRIYNFHNYALLVIPIISIIFNGFCLFIFFDXXXXXXXXXXXXXXXXATEIVFNISGFLYSVTKFIDYPSINQFSKLFWVFILQIGTFSVASGLICRNWTILHLAIYRFDSICRPLNTKKIYTETSTYKLLWITYILAAVIAFPRTFEYKATFCEGNLVLKPSLLNYDWYAYGYQGSLIFIIQTAAPVVCTSILSISVMRAILKVKRFRKSFSKTIKTKNNAISGDALMIFICLAFFLFETPSFFSKALQSYLMRNNKIIEDVLLATVANLLVYLDSVINIFVYILSNPVFRKKLKQIFHFKAFNLKEYPTEATALERRETISQSKE 1162
            IKQLMDDINCSYPLETVGNKSDESDENLAAFALRIYNFHNYALLVIPIISIIFNGFCLFIFFDKIWKKSILSILLKYLSATEIVFNISGFLYSVTKFIDYPSINQFSKLFWVFILQIGTFSVASGLICRNWTILHLAIYRFDSICRPLNTKKIYTETSTYKLLWITYILAAVIAFPRTFEYKATFCEGNLVLKPSLLNYDWYAYGYQGSLIFIIQTAAPVVCTSILSISVMRAILKVKRFRKSFSKTIKTKNNAISGDALMIFICLAFFLFETPSFFSKALQSYLMRNNKIIEDVLLATVANLLVYLDSVINIFVYILSNPVFRKKLKQIFHFKAFNLKEYPTEATALERRETISQSKE
Sbjct:  230 IKQLMDDINCSYPLETVGNKSDESDENLAAFALRIYNFHNYALLVIPIISIIFNGFCLFIFFDKIWKKSILSILLKYLSATEIVFNISGFLYSVTKFIDYPSINQFSKLFWVFILQIGTFSVASGLICRNWTILHLAIYRFDSICRPLNTKKIYTETSTYKLLWITYILAAVIAFPRTFEYKATFCEGNLVLKPSLLNYDWYAYGYQGSLIFIIQTAAPVVCTSILSISVMRAILKVKRFRKSFSKTIKTKNNAISGDALMIFICLAFFLFETPSFFSKALQSYLMRNNKIIEDVLLATVANLLVYLDSVINIFVYILSNPVFRKKLKQIFHFKAFNLKEYPTEATALERRETISQSKE 588          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000063294.1 (SMESG000063294.1)

HSP 1 Score: 154.836 bits (390), Expect = 3.582e-43
Identity = 103/291 (35.40%), Postives = 166/291 (57.04%), Query Frame = 2
Query:  200 HNYALLVIPIISIIFNGFCLFIFFDXXXXXXXXXXXXXXXXATEIVFNISGFLY-SVTKFIDYPSINQFSKLFWVFILQIGTFSVASGLICRNWTILHLAIYRFDSICRPLNTKKIYTETSTYKLLWITYILAAVIAFPRTFEYKATFCEGNLVLK---PSLLNYDWYAYGYQGSLIFIIQTAAPVVCTSILSISVMRAILKVKRFRKS-FSKTIKTKNNAISGDALMIFICLAFFLFETPSFFSKALQSYLMRNNKIIEDVLLATVANLLVYLDSVINIFVYILSNPVFR 1057
            + Y  L++  +SI+ N F   +F + IWKKS++S +L+ LS  EI+FN++  L  S+   I+    +    + +++++      +   LI RNWT++ LA YR++++CRP+ + K     +        + L+ +IA PR  E K   C+  L +    P L++Y WY Y + G L+F+IQ   PV+    LS  V++ I K+K+ RKS F+   K  +   SGD L++ +  AFF+ ETP+FFSK L  Y         D+ +  +AN L+YLDS+IN+ VY++SNP FR
Sbjct:   34 YKYITLILTPLSILSNTFAFVVFKESIWKKSVMSKILRMLSLFEILFNVNVLLEASIRHKIEEQHPSMVELVIFIYVITAAKVLMIVFLIARNWTVVILAGYRYEAVCRPVGSCKYIRYNNINLAFCFIFALSILIALPRMMETKIEICQPTLSVNRFVPFLISYKWYLYLHTGILLFLIQNGGPVILVCFLSSCVLKVIRKMKKIRKSNFNLADKKGSPQPSGDRLIVILSAAFFVLETPAFFSKILHHYFEYQGYYNLDIHIGLLANTLIYLDSIINVAVYVISNPTFR 324          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000022454.1 (SMESG000022454.1)

HSP 1 Score: 152.525 bits (384), Expect = 1.429e-42
Identity = 116/342 (33.92%), Postives = 188/342 (54.97%), Query Frame = 2
Query:  107 INCSYPLETVGNKSDESDENLAAFALRIYNFHNYALLVIPIISIIFNGFCLFIFFDXXXXXXXXXXXXXXXXATEIVFNISGFL------YSVTKFIDYPSINQFSKLF--WVFILQIGTFSVASGLICRNWTILHLAIYRFDSICRPLNTKKIYTETSTYKLLWITYILAAVIAFPRTFEYKATFC-------EGNLVLKPSLLNYDWYAYGYQGSLIFIIQTAAPVVCTSILSISVMRAILKVKRFRKSFSKTIKTKNNAIS----GDALMIFICLAFFLFETPSFFSKALQSYLMRNNKIIEDVLLATVANLLVYLDSVINIFVYILSNPVFRKKLKQI 1075
            INCS   + + N S        +++  ++ ++NY+ +V+  IS + N   +FIF  ++W+KS+ SI+LKYLS  E +FN +  +      Y++      P+ + +  L     F L I  F +   LICRN T+  LA +R++ +C P+  K+     + +++  + ++LA VIA PR FE     C       EG +    S    +WY Y ++G ++FI Q+  PV+   ILS  +++ I K+K+FR       +  NN +     GD ++  +CL FF+ E+PSFFSK L++YL   N +I D  L  VAN+ +Y+DS+IN F+YI+SNP F+    QI
Sbjct:    6 INCS---KIITNASGH-----VSYSNLLFTYYNYSSIVLSSISFLLNTLAIFIFNHRLWRKSLTSIILKYLSVFESLFNATVLIKNSYDNYAIQS--KSPNFSSYESLLIDETFRLFIRLFGIV-FLICRNVTVAVLAAHRYECVCLPVGAKRRINSRNVFQIELVIFLLALVIALPRLFEKYVVACAEPLWKIEGKVAFLDS---SNWYVYLHKGVVLFIFQSGGPVITVFILSFYILQVIKKMKKFRN------RNSNNKVRPQPLGDKIIFPLCLIFFILESPSFFSKILEAYLRSKNLVIVDHTLLVVANICIYVDSIINFFIYIISNPTFKLAFVQI 327          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000004763.1 (SMESG000004763.1)

HSP 1 Score: 126.331 bits (316), Expect = 1.590e-32
Identity = 82/234 (35.04%), Postives = 133/234 (56.84%), Query Frame = 2
Query:  461 LICRNWTILHLAIYRFDSICRPLNTKKIYTETSTYKLLWITYILAAVIAFPRTFEYKATFC--EGNLV-LKPSLLNYDWYAYGYQGSLIFIIQTAAPVVCTSILSISVMRAILKVKRFRKSFSKTIKTKNNAISGDALMIFICLAFFLFETPSFFSKALQ-SYLMRNNKIIEDVLLATVANLLVYLDSVINIFVYILSNPVFR----KKLKQIFHFKAFNLKEYPTEATALERR 1138
            LI RN  I+ LA +RF+ IC PL TK+  T  +     +     A +IAFPR FE   T+C   G++V +  +L N   Y   Y    +F+IQ   P++  +ILSI ++R I +   FR++ S     K  + + D L++ +C+ FF FE PSFFSK    S+++ N+KII    L  +AN+ +Y+DS +N+ +Y++SN +FR    +++ ++ H K  +  +Y T A   E++
Sbjct:  140 LIARNSWIILLAFHRFECICYPLRTKRYVTSANINFYFFGIVSFAILIAFPRMFEQTYTYCLQTGDVVNVSEALSNVYQYRIIYLNVFVFLIQIGIPLLSVNILSILMLRKIRQSLTFRRT-SAAPNQKKKSFAADKLVVALCITFFTFEMPSFFSKLFHNSHIISNDKIIYH--LTFIANISIYIDSSMNLLIYLVSNRIFRGAVLQQISKVSHKKTVSTTKYLTIAKKEEKQ 370          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000045974.1 (SMESG000045974.1)

HSP 1 Score: 112.464 bits (280), Expect = 9.511e-28
Identity = 94/323 (29.10%), Postives = 169/323 (52.32%), Query Frame = 2
Query:  137 GNKSDESDENLAAFALRIYNFHNYALL--VIPIISIIFNGFCLFIFFDXXXXXXXXXXXXXXXXAT--EIVFNISGFLYSVTKFIDYPSI---NQFSKLFWV-FILQIGTFSVASGLICRNWTILHLAIYRFDSICRPLNTKKIYTETSTYKLLWITYILAAV-IAFPRTFEYKATFCE--GNLVLKPSLLN-YDWYAYGYQGSLIFIIQTAAPVVCTSILSISVMRAILKVKRFRKSF--SKTIKTKNNAISGDALMIFICLAFFLFETPSFFSKALQSYLMRNNKIIEDVLLATVANLLVYLDSVINIFVYILSNPVFRKK 1063
             N S+++D+    F+L      NY LL  ++  I+II + F L I        +   ++    + +  E+ F ++ F +++ ++ +  +I     + + + V  I++I  + +   L+ RN+ I  LAI+R++ IC+P+ + K Y   ST+  + I  I A++ + FP+ FE    +C   G +  +  LLN +  Y   Y  ++IF+ QTA PV+    LSI ++  I +   F + +   K+   ++   + D L++F+CL F + E P+FFSK  Q   M  + +IE   LA +AN+ +YLDS  N F+Y  SN + + K
Sbjct:    9 ANCSNQTDDQTKEFSL------NYFLLSMIVTGINIIAHSFALAIISKPTSGSNNSMMMRIISNLSIIELFFQLTVFTFNLFEYCELDTIIIKYGYLEFYTVDIIVRIHIYGIHVFLLARNFIICSLAIHRYEVICKPIGSSK-YITFSTWPYIIIIMIFASLFLTFPKIFEDHIIYCHNTGMVFQRMKLLNEFIVYRIIYTNTIIFLTQTAGPVIIVITLSILILIKIHRRTEFHRKYFVRKSNSLRHAKWTTDVLIVFLCLTFLVLEMPAFFSKLCQ---MFESIVIER--LAMIANICIYLDSFANFFLYFFSNKILKMK 319          
The following BLAST results are available for this feature:
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
frpr-121.854e-725.41FMRFamide Peptide Receptor family [Source:UniProt... [more]
frpr-111.312e-623.40FMRFamide Peptide Receptor family [Source:UniProt... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A193KUR74.039e-14462.93GCR101 OS=Schmidtea mediterranea OX=79327 GN=gcr10... [more]
A0A095AUU75.702e-3835.41G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
A0A0R3SGW58.252e-3834.03G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
A0A3Q0KV191.196e-3731.32G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
A0A183P9C91.282e-3735.41G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000023730.10.000e+0100.00SMESG000023730.1[more]
SMESG000063294.13.582e-4335.40SMESG000063294.1[more]
SMESG000022454.11.429e-4233.92SMESG000022454.1[more]
SMESG000004763.11.590e-3235.04SMESG000004763.1[more]
SMESG000045974.19.511e-2829.10SMESG000045974.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30000873 ID=SMED30000873|Name=G_PROTEIN_RECEP_F1_2 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1169bp
GCAATAGCAATTTTTCATTTGGATTAAACAGTTTTATTTTCAAATAATTT
AATTGCTGAAAAATTTCCAGATAAATTTACTAAAAATCAAACAACTAATG
GATGACATCAACTGCAGTTATCCCCTTGAAACTGTGGGCAATAAATCTGA
CGAATCGGATGAGAATTTGGCCGCTTTTGCGTTGAGAATTTACAATTTTC
ACAACTATGCGTTATTAGTGATTCCAATTATAAGCATAATTTTTAATGGG
TTTTGTTTGTTTATATTCTTTGACAAAATCTGGAAAAAGTCCATTCTTAG
CATTCTCTTAAAATATCTCTCAGCGACAGAAATTGTTTTCAATATTTCTG
GGTTTTTGTATTCCGTCACCAAATTCATAGACTATCCATCAATTAATCAG
TTCTCGAAATTATTTTGGGTTTTCATTTTGCAAATCGGAACGTTTTCTGT
AGCGTCGGGTCTGATTTGTCGAAATTGGACTATTCTCCATTTAGCCATTT
ACCGATTTGATAGCATTTGTCGGCCGTTGAATACGAAAAAGATATACACT
GAAACTTCGACATATAAACTACTGTGGATTACGTATATTTTAGCAGCGGT
TATTGCTTTTCCGCGTACATTTGAATATAAGGCAACATTTTGCGAAGGAA
ATCTGGTTTTGAAGCCAAGTTTATTGAATTATGATTGGTATGCATATGGT
TATCAGGGGTCTTTGATTTTCATTATTCAAACTGCTGCTCCAGTAGTCTG
TACAAGCATTCTCAGTATTTCTGTGATGAGAGCAATACTAAAAGTAAAAA
GATTCAGAAAGTCATTTTCCAAAACAATAAAAACTAAAAACAATGCCATA
TCTGGTGATGCTTTGATGATTTTTATATGCCTTGCGTTCTTCCTATTTGA
AACCCCGTCCTTTTTCAGTAAGGCATTGCAATCATATTTGATGCGTAACA
ATAAGATCATAGAAGACGTCTTATTGGCAACCGTTGCTAATTTATTAGTT
TATCTTGATTCAGTTATTAACATTTTTGTGTACATTCTTTCTAATCCTGT
TTTTCGAAAGAAATTAAAACAAATATTTCATTTTAAAGCGTTTAATTTGA
AAGAGTACCCAACCGAAGCGACAGCTTTGGAAAGAAGAGAAACAATCAGT
CAAAGTAAAGAGTAACGCC
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protein sequence of SMED30000873-orf-1

>SMED30000873-orf-1 ID=SMED30000873-orf-1|Name=SMED30000873-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=356bp
MDDINCSYPLETVGNKSDESDENLAAFALRIYNFHNYALLVIPIISIIFN
GFCLFIFFDKIWKKSILSILLKYLSATEIVFNISGFLYSVTKFIDYPSIN
QFSKLFWVFILQIGTFSVASGLICRNWTILHLAIYRFDSICRPLNTKKIY
TETSTYKLLWITYILAAVIAFPRTFEYKATFCEGNLVLKPSLLNYDWYAY
GYQGSLIFIIQTAAPVVCTSILSISVMRAILKVKRFRKSFSKTIKTKNNA
ISGDALMIFICLAFFLFETPSFFSKALQSYLMRNNKIIEDVLLATVANLL
VYLDSVINIFVYILSNPVFRKKLKQIFHFKAFNLKEYPTEATALERRETI
SQSKE*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: cellular component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: molecular function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: biological process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.20.1070.10coord: 35..337
e-value: 1.2E-28
score: 102.0
NoneNo IPR availablePANTHERPTHR46641FAMILY NOT NAMEDcoord: 23..329
NoneNo IPR availableCDDcd149787tmA_FMRFamide_R-likecoord: 38..325
e-value: 1.72452E-25
score: 102.326
NoneNo IPR availableSUPERFAMILYSSF81321Family A G protein-coupled receptor-likecoord: 6..339
NoneNo IPR availableTMHMMTMhelixcoord: 69..91
NoneNo IPR availableTMHMMTMhelixcoord: 254..276
NoneNo IPR availableTMHMMTMhelixcoord: 40..62
NoneNo IPR availableTMHMMTMhelixcoord: 211..233
NoneNo IPR availableTMHMMTMhelixcoord: 153..175
NoneNo IPR availableTMHMMTMhelixcoord: 296..318
NoneNo IPR availableTMHMMTMhelixcoord: 111..133
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 53..316
score: 15.738