SMED30000805

Overview
NameSMED30000805
Smed IDSMED30000805
Length (bp)2215
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30000805 (SMED30000805) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30000805 (SMED30000805) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30000805 (SMED30000805) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30000805 (SMED30000805) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30000805

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30000805SMESG000070031.1 dd_Smed_v4_9487_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30000805SMESG000070031.1 dd_Smed_v4_9487_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30000805SMESG000070031.1 dd_Smed_v4_9487_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30000805SMESG000070031.1 dd_Smed_v4_9487_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30000805SMESG000070031.1 dd_Smed_v4_9487_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30000805 vs. TrEMBL
Match: A0A267EV84 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig001291g2 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 6.017e-6
Identity = 47/164 (28.66%), Postives = 74/164 (45.12%), Query Frame = 2 
Query: 1124 LDSEIMSERQRGKILEVALTNSNCKLLDAESNIMELKKRL--------SQKSTDLNKAMESLEVVKRNLEHQSQKSMHLEKTIRSLKLITNERNREYEIRNQATQTVQFMNDLSANKLLEQFEEERKIWLEEKCKVLTYQRQIESNFQQLLIKCRRLETHVLHM 1591
            L++E+ ++ +R   LE AL  SN  L+ A   +  L+++L        + ++ D +    +                 LE+T R L L+  ER+RE E                       F+ ER  WLEEK KV+ YQRQ+++N +QL+  CR LE  V  +
Sbjct:  369 LEAELAAQTERASGLEAALAASNESLVAATREVHRLRQQLPTAPAVERACQTEDSDSVESTTAATAAAEAEVEAAQSKLEET-RKLLLLAEERSREQEA---------------------SFQMERSQWLEEKSKVIGYQRQLQANQKQLVATCRHLEGEVARL 510
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BLAST of SMED30000805 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006003.1 (pep scaffold:Pmarinus_7.0:GL478646:41833:42718:-1 gene:ENSPMAG00000005428.1 transcript:ENSPMAT00000006003.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 47.7506 bits (112), Expect = 3.674e-6
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 2 
Query: 1448 KLLEQ---FEEERKIWLEEKCKVLTYQRQIESNFQQLLIKCRRLETHVLHMKSQLKDSRRRPSVSANHSEDHDKSSTNS 1675
            KL EQ   FEEER++WLEEK KV+ YQRQ +S + Q   + R LE  V  M ++L +SR    V A HSE   K++  +
Sbjct:  162 KLGEQAGAFEEERRVWLEEKDKVIRYQRQQQS-YLQTFQRNRALEEEVRRMAAEL-ESRDMEEVDA-HSEFSYKNAATA 237
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BLAST of SMED30000805 vs. Planmine SMEST
Match: SMESG000070031.1 (SMESG000070031.1)

HSP 1 Score: 993.416 bits (2567), Expect = 0.000e+0
Identity = 534/540 (98.89%), Postives = 537/540 (99.44%), Query Frame = 2 
Query:  128 MRNNYVNSEPNKISTQPYISSLNKSSAFHSTQQSKSSPISKLYVDSTNEKTVSQIQTQNFRQHSFDKLNQSLSIYENFNFTTAMITGDKTLPVRKSRIFDRSIEPSNRKARTEIKRDLSMPPISAKQLTVVENNIYSQYSVEQNHIKYSIDADLDADFNEFDDSPSVMYDSIITTNSITPPPAHIINTSSTSEYVNRKAIIRPLAFRPVQSVNSGTSPTKPPVTLXXXXXXXXXXXXXXXXXHASRMAMKTNLNRVQXXXXXXXXXXXXXXXXXXXXXXXXXXXISPSFDESVSIFDSLLAGEVYSQPAEQPGAIEHFSRESEHDIAGWKLSLDSEIMSERQRGKILEVALTNSNCKLLDAESNIMELKKRLSQKSTDLNKAMESLEVVKRNLEHQSQKSMHLEKTIRSLKLITNERNREYEIRNQATQTVQFMNDLSANKLLEQFEEERKIWLEEKCKVLTYQRQIESNFQQLLIKCRRLETHVLHMKSQLKDSRRRPSVSANHSEDHDKSSTNSVDSSNRNYFTNVSRIEVTEHQSSF 1747
            MRNNYVNSEPNKISTQPYISSLNKSSAFHSTQQSKSS ISKLYVDSTNEKTVSQIQTQNFRQHSFDKLNQSLSIYENFNFTTAMITGDKTLPVRKSRIFDRSIEPSNRKARTEIKRDLSMPPISAKQLTVVENNIYSQYSVEQNHIKYSIDADLDADFNEFDDSPSVMYDSIITTNSITPPP HIINTSSTSEYVNRKAIIRPLAFRPVQSVNSGTSPTKPPVTLKPKIPEPKKSSPPPVPPHA+RMAMKTNLNRVQSAKSGDSSGYYSSRTTGTLTGTASSTDISPSFDESVSIFDSLLAGEVYSQPAEQPGAIEHF+RESEHDIAGWKLSLDSEIMSERQRGKILEVALTNSNCKLLDAESNIMELKKRLSQKSTD NKAMESLEVVKRNLEHQSQKSMHLEKTI+SLKLITNERNREYEIRNQATQTVQFMNDLSANKLLEQFEEERKIWLEEKCKVLTYQRQIESNFQQLLIKCRRLETHVLHMKSQLKDSRRRPSVSANHSEDHDKSSTNSVDSSNRNYFTNVSRIEVTEHQSSF
Sbjct:    1 MRNNYVNSEPNKISTQPYISSLNKSSAFHSTQQSKSSAISKLYVDSTNEKTVSQIQTQNFRQHSFDKLNQSLSIYENFNFTTAMITGDKTLPVRKSRIFDRSIEPSNRKARTEIKRDLSMPPISAKQLTVVENNIYSQYSVEQNHIKYSIDADLDADFNEFDDSPSVMYDSIITTNSITPPPVHIINTSSTSEYVNRKAIIRPLAFRPVQSVNSGTSPTKPPVTLKPKIPEPKKSSPPPVPPHATRMAMKTNLNRVQSAKSGDSSGYYSSRTTGTLTGTASSTDISPSFDESVSIFDSLLAGEVYSQPAEQPGAIEHFNRESEHDIAGWKLSLDSEIMSERQRGKILEVALTNSNCKLLDAESNIMELKKRLSQKSTDFNKAMESLEVVKRNLEHQSQKSMHLEKTIQSLKLITNERNREYEIRNQATQTVQFMNDLSANKLLEQFEEERKIWLEEKCKVLTYQRQIESNFQQLLIKCRRLETHVLHMKSQLKDSRRRPSVSANHSEDHDKSSTNSVDSSNRNYFTNVSRIEVTEHQSSF 540
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BLAST of SMED30000805 vs. Planmine SMEST
Match: SMESG000070031.1 (SMESG000070031.1)

HSP 1 Score: 822.002 bits (2122), Expect = 0.000e+0
Identity = 451/457 (98.69%), Postives = 454/457 (99.34%), Query Frame = 2 
Query:  128 MRNNYVNSEPNKISTQPYISSLNKSSAFHSTQQSKSSPISKLYVDSTNEKTVSQIQTQNFRQHSFDKLNQSLSIYENFNFTTAMITGDKTLPVRKSRIFDRSIEPSNRKARTEIKRDLSMPPISAKQLTVVENNIYSQYSVEQNHIKYSIDADLDADFNEFDDSPSVMYDSIITTNSITPPPAHIINTSSTSEYVNRKAIIRPLAFRPVQSVNSGTSPTKPPVTLXXXXXXXXXXXXXXXXXHASRMAMKTNLNRVQXXXXXXXXXXXXXXXXXXXXXXXXXXXISPSFDESVSIFDSLLAGEVYSQPAEQPGAIEHFSRESEHDIAGWKLSLDSEIMSERQRGKILEVALTNSNCKLLDAESNIMELKKRLSQKSTDLNKAMESLEVVKRNLEHQSQKSMHLEKTIRSLKLITNERNREYEIRNQATQTVQFMNDLSANKLLEQFEEERKIWLEEK 1498
            MRNNYVNSEPNKISTQPYISSLNKSSAFHSTQQSKSS ISKLYVDSTNEKTVSQIQTQNFRQHSFDKLNQSLSIYENFNFTTAMITGDKTLPVRKSRIFDRSIEPSNRKARTEIKRDLSMPPISAKQLTVVENNIYSQYSVEQNHIKYSIDADLDADFNEFDDSPSVMYDSIITTNSITPPP HIINTSSTSEYVNRKAIIRPLAFRPVQSVNSGTSPTKPPVTLKPKIPEPKKSSPPPVPPHA+RMAMKTNLNRVQSAKSGDSSGYYSSRTTGTLTGTASSTDISPSFDESVSIFDSLLAGEVYSQPAEQPGAIEHF+RESEHDIAGWKLSLDSEIMSERQRGKILEVALTNSNCKLLDAESNIMELKKRLSQKSTD NKAMESLEVVKRNLEHQSQKSMHLEKTI+SLKLITNERNREYEIRNQATQTVQFMNDLSANKLLEQFEEERKIWLEEK
Sbjct:    1 MRNNYVNSEPNKISTQPYISSLNKSSAFHSTQQSKSSAISKLYVDSTNEKTVSQIQTQNFRQHSFDKLNQSLSIYENFNFTTAMITGDKTLPVRKSRIFDRSIEPSNRKARTEIKRDLSMPPISAKQLTVVENNIYSQYSVEQNHIKYSIDADLDADFNEFDDSPSVMYDSIITTNSITPPPVHIINTSSTSEYVNRKAIIRPLAFRPVQSVNSGTSPTKPPVTLKPKIPEPKKSSPPPVPPHATRMAMKTNLNRVQSAKSGDSSGYYSSRTTGTLTGTASSTDISPSFDESVSIFDSLLAGEVYSQPAEQPGAIEHFNRESEHDIAGWKLSLDSEIMSERQRGKILEVALTNSNCKLLDAESNIMELKKRLSQKSTDFNKAMESLEVVKRNLEHQSQKSMHLEKTIQSLKLITNERNREYEIRNQATQTVQFMNDLSANKLLEQFEEERKIWLEEK 457
[Close]
BLAST of SMED30000805 vs. Planmine SMEST
Match: SMESG000042161.1 (SMESG000042161.1)

HSP 1 Score: 52.7582 bits (125), Expect = 6.545e-7
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 2 
Query: 1451 LLEQFEEERKIWLEEKCKVLTYQRQIESNFQQLLIKCRRLETHVLHMKSQL 1603
            L +QFEEER  WLEEK +V++Y +Q+   +Q LL K  +LE  +L+++ QL
Sbjct:  320 LQQQFEEERAKWLEEKAQVISYHKQLNLKYQNLLEKNVKLENELLNLQQQL 370
[Close]
BLAST of SMED30000805 vs. Planmine SMEST
Match: SMESG000042161.1 (SMESG000042161.1)

HSP 1 Score: 52.7582 bits (125), Expect = 7.323e-7
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 2 
Query: 1451 LLEQFEEERKIWLEEKCKVLTYQRQIESNFQQLLIKCRRLETHVLHMKSQL 1603
            L +QFEEER  WLEEK +V++Y +Q+   +Q LL K  +LE  +L+++ QL
Sbjct:  312 LQQQFEEERAKWLEEKAQVISYHKQLNLKYQNLLEKNVKLENELLNLQQQL 362
The following BLAST results are available for this feature:
BLAST of SMED30000805 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000805 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000805 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000805 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000805 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000805 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000805 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000805 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A267EV846.017e-628.66Uncharacterized protein OS=Macrostomum lignano OX=... [more]
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BLAST of SMED30000805 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000805 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSPMAT00000006003.13.674e-645.57pep scaffold:Pmarinus_7.0:GL478646:41833:42718:-1 ... [more]
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BLAST of SMED30000805 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000805 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000805 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000805 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000070031.10.000e+098.89SMESG000070031.1[more]
SMESG000070031.10.000e+098.69SMESG000070031.1[more]
SMESG000042161.16.545e-747.06SMESG000042161.1[more]
SMESG000042161.17.323e-747.06SMESG000042161.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30000805 ID=SMED30000805|Name=SMED30000805|organism=Schmidtea mediterranea sexual|type=transcript|length=2215bp
GAACACATGACCTTGATTAATAACTGACATTTGATGTTAAATATTATGTT
AAAAATAACTTACATTGAAATCAAAGTCGATTTACGTTAACATAATGTTT
TAGCAAAGTAAAATTTCTTCAGTAGTTATGCGAAACAATTATGTCAATTC
AGAACCAAATAAGATATCTACTCAGCCTTATATATCATCTTTGAATAAAT
CATCTGCTTTTCACTCGACTCAGCAATCAAAATCTAGTCCAATATCAAAA
CTATACGTTGATTCAACAAATGAAAAAACTGTTTCCCAAATCCAAACTCA
AAATTTTCGTCAGCATTCATTTGACAAACTAAATCAGTCGCTTTCAATTT
ATGAAAATTTCAATTTCACGACAGCCATGATAACTGGAGATAAAACATTG
CCGGTGAGGAAATCTCGAATTTTCGATCGCTCAATCGAACCGAGCAATAG
AAAAGCGAGAACTGAAATCAAAAGAGATTTATCGATGCCTCCAATCAGTG
CTAAACAATTAACAGTTGTTGAAAATAACATTTACTCACAATATTCAGTG
GAACAAAATCACATAAAATACTCGATTGATGCAGATTTGGATGCTGATTT
CAATGAATTTGATGATTCGCCCAGCGTCATGTATGACTCGATCATTACCA
CTAATTCGATAACTCCACCACCGGCTCATATTATTAACACTTCATCAACT
TCAGAGTATGTAAATCGAAAAGCCATTATACGACCACTGGCGTTTCGACC
TGTGCAATCTGTCAATTCAGGAACCAGTCCAACCAAACCTCCGGTTACAT
TGAAACCGAAAATTCCTGAACCGAAAAAATCCAGCCCCCCTCCGGTTCCC
CCTCATGCCAGTCGTATGGCAATGAAAACAAATCTCAATCGAGTTCAATC
AGCAAAATCGGGTGATTCATCGGGATATTACAGCAGTCGAACCACTGGAA
CGCTTACGGGAACTGCGTCTTCCACTGATATCTCCCCGTCCTTTGATGAA
TCTGTATCAATTTTCGATAGTTTACTCGCAGGTGAGGTGTACAGCCAGCC
AGCAGAGCAGCCAGGTGCCATTGAACATTTCAGTCGGGAATCGGAACATG
ACATAGCCGGATGGAAACTGTCTTTGGATTCTGAAATTATGTCCGAAAGA
CAACGCGGTAAAATTCTAGAAGTCGCTCTGACGAATTCGAATTGTAAGCT
GCTGGATGCCGAAAGCAACATAATGGAATTGAAAAAACGTTTATCTCAAA
AGTCGACTGACCTCAACAAGGCCATGGAAAGCCTTGAAGTAGTCAAGCGA
AATCTCGAACATCAGAGCCAAAAGTCCATGCATCTCGAAAAAACCATCCG
GTCATTAAAATTGATAACAAATGAGAGAAATAGAGAATATGAAATAAGAA
ACCAAGCCACTCAAACAGTCCAGTTCATGAATGATTTGTCAGCCAACAAA
TTACTGGAACAATTTGAAGAGGAGAGAAAAATTTGGCTGGAAGAAAAATG
TAAAGTTTTAACATATCAAAGACAAATCGAATCCAATTTTCAACAGTTAC
TCATTAAATGTCGTCGACTTGAAACTCACGTTTTGCACATGAAATCTCAA
TTAAAAGACAGTCGGCGTCGACCTTCGGTGTCGGCTAATCATTCAGAGGA
TCATGACAAATCATCCACAAACAGTGTAGATTCATCGAACCGGAATTATT
TCACCAACGTCAGTCGTATAGAGGTAACTGAACACCAGTCCTCGTTCTGA
TGGTGATAGTCACCCCGTGAGTCGGTAGTAGCCATCCGCTGCTGTCTATA
TCATCTCATCCTCGGAAAGATTTGCTTGTCTTCTGTGTCAAAATTGGTTT
TCTCTGTCAGTCATTGAGAGTATTTGATTTTTTTAGAGTTTTTTTAATTG
CACATTATTCTATGCATTAAATCCAGTGCTTTGTTTCTTTTTAGGAGTCG
TTCAGCTTTTGTAACCCATTGAAAATTTGCCTTTCACTTTCTCTGATGAT
TGCATATGTGATTTCAGATTTCAATGAAACCGACAGTTGAGCATCAATTT
TTACTAGTATATTTTTTCTATTGGGTTTGTTTTAATTGTTTTCATTAGTC
TTGTCTCTGTAAGGCGGGAAGGCACGGCTTGACAAATGAAAGTTTGAAGG
ATGTCAGTGTATAAAATACTGAGAGAATAAATATAAATAAATATCAATCT
GCGTTATCTTCATTT
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protein sequence of SMED30000805-orf-1

>SMED30000805-orf-1 ID=SMED30000805-orf-1|Name=SMED30000805-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=541bp
MRNNYVNSEPNKISTQPYISSLNKSSAFHSTQQSKSSPISKLYVDSTNEK
TVSQIQTQNFRQHSFDKLNQSLSIYENFNFTTAMITGDKTLPVRKSRIFD
RSIEPSNRKARTEIKRDLSMPPISAKQLTVVENNIYSQYSVEQNHIKYSI
DADLDADFNEFDDSPSVMYDSIITTNSITPPPAHIINTSSTSEYVNRKAI
IRPLAFRPVQSVNSGTSPTKPPVTLKPKIPEPKKSSPPPVPPHASRMAMK
TNLNRVQSAKSGDSSGYYSSRTTGTLTGTASSTDISPSFDESVSIFDSLL
AGEVYSQPAEQPGAIEHFSRESEHDIAGWKLSLDSEIMSERQRGKILEVA
LTNSNCKLLDAESNIMELKKRLSQKSTDLNKAMESLEVVKRNLEHQSQKS
MHLEKTIRSLKLITNERNREYEIRNQATQTVQFMNDLSANKLLEQFEEER
KIWLEEKCKVLTYQRQIESNFQQLLIKCRRLETHVLHMKSQLKDSRRRPS
VSANHSEDHDKSSTNSVDSSNRNYFTNVSRIEVTEHQSSF*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0002056medial muscle cell
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 351..378
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 488..515
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..242
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 488..521
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..242