Tigger transposable element-derived protein 1

Overview
NameTigger transposable element-derived protein 1
Smed IDSMED30000766
Length (bp)1033
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Tigger transposable element-derived protein 1 (SMED30000766) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Tigger transposable element-derived protein 1 (SMED30000766) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Homology
[Close]
BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Human
Match: TIGD1 (tigger transposable element derived 1 [Source:HGNC Symbol;Acc:HGNC:14523])

HSP 1 Score: 53.5286 bits (127), Expect = 3.012e-7
Identity = 32/93 (34.41%), Postives = 52/93 (55.91%), Query Frame = 3 
Query:  228 RVLCMAAMAPAHPPGL---------IYLPPNTTSILQPMDQ*VITNFKKLFTKHLFKRC-----YEVTENTNLT-LREFWKNHYNIVICLKLI 461
            ++L +   AP+HP  L         I++P NTTSILQPMDQ VI+ FK  + ++ F +       +V++ +  + L+ FWK  + I+  +K I
Sbjct:  296 KILLLIDNAPSHPRALMEIYEEINVIFMPANTTSILQPMDQGVISTFKSYYLRNTFHKALAAMDSDVSDGSGQSKLKTFWKG-FTILDAIKNI 387
[Close]
BLAST of Tigger transposable element-derived protein 1 vs. UniProt/SwissProt
Match: sp|Q96MW7|TIGD1_HUMAN (Tigger transposable element-derived protein 1 OS=Homo sapiens OX=9606 GN=TIGD1 PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.446e-6
Identity = 32/93 (34.41%), Postives = 52/93 (55.91%), Query Frame = 3 
Query:  228 RVLCMAAMAPAHPPGL---------IYLPPNTTSILQPMDQ*VITNFKKLFTKHLFKRC-----YEVTENTNLT-LREFWKNHYNIVICLKLI 461
            ++L +   AP+HP  L         I++P NTTSILQPMDQ VI+ FK  + ++ F +       +V++ +  + L+ FWK  + I+  +K I
Sbjct:  296 KILLLIDNAPSHPRALMEIYEEINVIFMPANTTSILQPMDQGVISTFKSYYLRNTFHKALAAMDSDVSDGSGQSKLKTFWKG-FTILDAIKNI 387
[Close]
BLAST of Tigger transposable element-derived protein 1 vs. TrEMBL
Match: A0A4Y2S5W4 (Tigger transposable element-derived protein 1 OS=Araneus ventricosus OX=182803 GN=TIGD1_86 PE=4 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.060e-54
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 3 
Query:  225 IRVLCMAAMAPAHPPGL-------------IYLPPNTTSILQPMDQ*VITNFKKLFTKHLFKRCYEVTENTNLTLREFWKNHYNIVICLKLIDSKVL 476
            ++ L +   APAHPP L             +YLPPNTT ILQPMDQ VI+NFKKL+TKHLF+RC+EVTENTNLTLRE+WK+H+NIV+CL++ID   L
Sbjct:  220 MQALLVLDNAPAHPPNLEDDILEEFKFIKVLYLPPNTTPILQPMDQQVISNFKKLYTKHLFRRCFEVTENTNLTLREYWKDHFNIVVCLRMIDQAWL 316

HSP 2 Score: 115.546 bits (288), Expect = 7.060e-54
Identity = 87/157 (55.41%), Postives = 113/157 (71.97%), Query Frame = 2 
Query:  470 GVTKRRLNSAWRKLWPDVVLER*GFDGFEPIEGE---IVSIGCSMGLEVDEADVANXXXXXXXXXXXXXXXXXQKVSHSEVMMXXXXXXXXXXXXXXXXXXISDILDKWQEVSDFVEKRHPEKLSTGRASALFDDMCLTFFRNILKRSQKQTSLDRY 931
             +T R L SAW+KLWP+ V ER  F+GFEP       IVS+G SMGL +DE DV  L+EEH++ELTTE L+ELQ   HS V+ E+  EE  E E+ +++ EI +IL  W+ VS FVEK+HPEK++TGRAS LF+D CLT FR+IL+  +KQTSLD +
Sbjct:  317 SITTRTLTSAWKKLWPESVAER-TFEGFEPEVPVEEEIVSLGKSMGLVMDERDVNELVEEHSQELTTEELQELQSQQHSGVLQEIGFEEEPEVEDTISTSEIKEILGMWERVSQFVEKKHPEKVATGRASELFNDTCLTHFRSILQGRKKQTSLDIF 472
[Close]
BLAST of Tigger transposable element-derived protein 1 vs. TrEMBL
Match: A0A4Y2LN42 (Tigger transposable element-derived protein 1 OS=Araneus ventricosus OX=182803 GN=TIGD1_15 PE=4 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.237e-53
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 3 
Query:  225 IRVLCMAAMAPAHPPGL--------IYLPPNTTSILQPMDQ*VITNFKKLFTKHLFKRCYEVTENTNLTLREFWKNHYNIVICLKLIDSKVL 476
            ++ L +   APAHP  L        +YLPPNTT ILQPMDQ VI+NFKKL+TKHLF+RC+EVTENTNLTLRE+WK+H+NIV+CL++ID   L
Sbjct:   38 MQALLVLDNAPAHPLNLEEFKFIKFLYLPPNTTPILQPMDQQVISNFKKLYTKHLFRRCFEVTENTNLTLREYWKDHFNIVVCLRMIDQAWL 129

HSP 2 Score: 114.39 bits (285), Expect = 9.237e-53
Identity = 82/159 (51.57%), Postives = 111/159 (69.81%), Query Frame = 2 
Query:  470 GVTKRRLNSAWRKLWPDVVLER*GFDGFEP---IEGEIVSIGCSMGLEVDEADVANXXXXXXXXXXXXXXXXXQKVSHSEVMMXXXXXXXXXXXXXXXXXXISDILDKWQEVSDFVEKRHPEKLSTGRASALFDDMCLTFFRNILKRSQKQTSLDRYVV 937
             VT R L  AW+KLWP+ V ER  F+GFEP   +  EIVS+   MGL +DE DV  L+ E+++ELTTE L+ELQ   HS V+ E+  EE  E E+ +++ EI +IL  W+ VS FVEK+HPEK++TGRAS LF+D CLT F +IL+  +KQTS+D + +
Sbjct:  130 SVTTRTLTYAWKKLWPESVAER-TFEGFEPEVPVVEEIVSLEKFMGLVIDERDVNELVAEYSQELTTEELQELQSQQHSGVLREIDFEEEPEVEDTISTSEIKEILGMWERVSQFVEKKHPEKVATGRASELFNDTCLTHFCSILQGRKKQTSMDSFFL 287
[Close]
BLAST of Tigger transposable element-derived protein 1 vs. TrEMBL
Match: A0A4Y2FE01 (Tigger transposable element-derived protein 1 OS=Araneus ventricosus OX=182803 GN=TIGD1_33 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.311e-52
Identity = 57/97 (58.76%), Postives = 72/97 (74.23%), Query Frame = 3 
Query:  225 IRVLCMAAMAPAHPPG-------------LIYLPPNTTSILQPMDQ*VITNFKKLFTKHLFKRCYEVTENTNLTLREFWKNHYNIVICLKLIDSKVL 476
            ++ L +   APAHPP              ++YLPPNTT ILQPMDQ VI+NFKKL+TKHLF+ C+EVTENTNLTLRE+WK+H+NIV+CL++ID   L
Sbjct:  220 MQALLVLDNAPAHPPNFEDDILEKFKFIKVLYLPPNTTPILQPMDQQVISNFKKLYTKHLFRGCFEVTENTNLTLREYWKDHFNIVVCLRMIDQAWL 316

HSP 2 Score: 114.39 bits (285), Expect = 2.311e-52
Identity = 86/157 (54.78%), Postives = 111/157 (70.70%), Query Frame = 2 
Query:  470 GVTKRRLNSAWRKLWPDVVLER*GFDGFEPIEGE---IVSIGCSMGLEVDEADVANXXXXXXXXXXXXXXXXXQKVSHSEVMMXXXXXXXXXXXXXXXXXXISDILDKWQEVSDFVEKRHPEKLSTGRASALFDDMCLTFFRNILKRSQKQTSLDRY 931
             VT R L SAW+KLWP+ V ER  F+GFEP       IVS+G SMGL +DE DV  + EEH++ELTTE L+ELQ   HS V+ E+  EE  E E+ +++ EI +IL  W+ VS FV K+HPEK++TGRAS LF+D CLT FR+IL+  +KQTSLD +
Sbjct:  317 SVTTRTLTSAWKKLWPESVAER-TFEGFEPEVPVEEEIVSLGKSMGLVMDERDVNEINEEHSQELTTEELQELQSQQHSGVLQEIGFEEKPEVEDTISASEIKEILGMWERVSQFVGKKHPEKVATGRASELFNDTCLTHFRSILQGRKKQTSLDSF 472
[Close]
BLAST of Tigger transposable element-derived protein 1 vs. TrEMBL
Match: A0A4Y2UM76 (Tigger transposable element-derived protein 1 OS=Araneus ventricosus OX=182803 GN=TIGD1_1 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.179e-51
Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 3 
Query:  225 IRVLCMAAMAPAHPPGL-------------IYLPPNTTSILQPMDQ*VITNFKKLFTKHLFKRCYEVTENTNLTLREFWKNHYNIVICLKLIDSKVL 476
            ++ L +   APAHP  L             +YLPPNTT ILQPMDQ VI+NFKKL+TKHLF+RC+EVTENTNLTLRE+WK+H+NIV+CL++ID   L
Sbjct:  100 MQALLVLDNAPAHPMNLEDDILEEFKFIKVLYLPPNTTPILQPMDQQVISNFKKLYTKHLFRRCFEVTENTNLTLREYWKDHFNIVVCLRMIDQAWL 196

HSP 2 Score: 110.538 bits (275), Expect = 3.179e-51
Identity = 85/157 (54.14%), Postives = 109/157 (69.43%), Query Frame = 2 
Query:  470 GVTKRRLNSAWRKLWPDVVLER*GFDGFEPIEGE---IVSIGCSMGLEVDEADVANXXXXXXXXXXXXXXXXXQKVSHSEVMMXXXXXXXXXXXXXXXXXXISDILDKWQEVSDFVEKRHPEKLSTGRASALFDDMCLTFFRNILKRSQKQTSLDRY 931
             VT R L S W+KLWP+ V ER  F+ FEP       IVS+G SMGL +DE DV  L+EEH++ELTTE L+ELQ   HS V+ E   EE  E E+ +++ EI +I   W+ VS FVEK+HPEK++TGRAS LF+D CLT FR+IL+  +KQTSLD +
Sbjct:  197 SVTTRTLTSKWKKLWPESVAER-TFEAFEPEVPVEEEIVSLGKSMGLVMDERDVNELVEEHSQELTTEELQELQSQQHSGVLQETGFEEEPEVEDTISTSEIKEIWGMWERVSQFVEKKHPEKVATGRASELFNDTCLTHFRSILQGRKKQTSLDSF 352
[Close]
BLAST of Tigger transposable element-derived protein 1 vs. TrEMBL
Match: A0A4Y2MZH8 (Tigger transposable element-derived protein 1 OS=Araneus ventricosus OX=182803 GN=TIGD1_16 PE=4 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.352e-51
Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 3 
Query:  225 IRVLCMAAMAPAHPPGL-------------IYLPPNTTSILQPMDQ*VITNFKKLFTKHLFKRCYEVTENTNLTLREFWKNHYNIVICLKLIDSKVL 476
            ++ L +   APAHPP L             +YLPPNTT ILQPMDQ VI+NFKKL+TKHLF+ C+EVTENTNLTLRE+WK+H+NIV+CL++ID   L
Sbjct:  301 MQALFVLGNAPAHPPNLEDDILEKFKFIKVLYLPPNTTPILQPMDQQVISNFKKLYTKHLFRGCFEVTENTNLTLREYWKDHFNIVVCLRMIDQAWL 397

HSP 2 Score: 108.227 bits (269), Expect = 3.352e-51
Identity = 89/173 (51.45%), Postives = 117/173 (67.63%), Query Frame = 2 
Query:  473 VTKRRLNSAWRKLWPDVVLER*GFDGFEPIEGE---IVSIGCSMGLEVDEADVANXXXXXXXXXXXXXXXXXQKVSHSEVMMXXXXXXXXXXXXXXXXXXISDILDKWQEVSDFVEKRHPEKLSTGRASALFDDMCLTFFRNILKRSQKQTSLDRYV--VKVSRTESQKSEAK 976
            VT R L SAW+KLWP+ V ER  F+GFEP       IVS+G SMGL ++E DV  LIEEH +ELTTE L+ELQ   HS V+ E+  EE  E E+ +++ EI +IL  W+ VS FVEK+HPE ++T RAS LF+D CLT F +IL+  +KQTSL+ +    K ++T  +KS  K
Sbjct:  399 VTTRTLTSAWKKLWPESVAER-TFEGFEPEVPVEEEIVSLGKSMGLVMNERDVNELIEEHFQELTTEELQELQSQQHSGVLKEIGFEEETEVEDTISTSEIKEILGMWERVSQFVEKKHPENVATRRASQLFNDTCLTHFLSILQGRKKQTSLNSFFNPAKKAKTSEEKSSDK 570
[Close]
BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005921.1 (pep scaffold:Pmarinus_7.0:GL487978:976:2666:1 gene:ENSPMAG00000005352.1 transcript:ENSPMAT00000005921.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 55.0694 bits (131), Expect = 1.166e-10
Identity = 29/78 (37.18%), Postives = 43/78 (55.13%), Query Frame = 3 
Query:  228 RVLCMAAMAPAHPPGL---------IYLPPNTTSILQPMDQ*VITNFKKLFTKHLFKRCYEVTE-NTNLTLREFWKNH 431
            ++L +   AP+HP  L         ++LPPN TS+LQPMDQ V    K  + +    +  E TE +T  T+REFW+ +
Sbjct:  243 KILLVIDNAPSHPAHLDDFHPNIKVVFLPPNATSVLQPMDQGVNAKCKAYYLRRTLAQALEATEGDTGKTVREFWEAY 320

HSP 2 Score: 27.7202 bits (60), Expect = 1.166e-10
Identity = 21/59 (35.59%), Postives = 28/59 (47.46%), Query Frame = 2 
Query:  473 VTKRRLNSAWRKLWPDV------VLER*GFDGFEP---IEGEIVSIGCSMGLEVDEADV 622
            VT+  LN AW K+ P +      V  R G    E    +   IV++   + LEVD ADV
Sbjct:  336 VTQTCLNGAWEKMCPQLAAAAAAVHARRGPQNDETHAEVAQSIVTLAAELRLEVDAADV 394
[Close]
BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000003283.1 (pep scaffold:Pmarinus_7.0:GL479064:1419:3178:1 gene:ENSPMAG00000003000.1 transcript:ENSPMAT00000003283.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 55.8398 bits (133), Expect = 6.699e-9
Identity = 30/89 (33.71%), Postives = 47/89 (52.81%), Query Frame = 3 
Query:  222 DIRVLCMAAMAPAHPP---------GLIYLPPNTTSILQPMDQ*VITNFKKLFTKHLFKRCYEVTENTNLTLREFWKNHYNIVICLKLI 461
            D ++L +   AP+HPP          +++LPP+TTS+LQPM Q VI  FK  + +  F    E T+  N      W++ +NI   + +I
Sbjct:  265 DFKILLVVDNAPSHPPYIVDLSEQIKVVFLPPHTTSLLQPMGQGVIAAFKAYYLRRTFAMLIEATDGENSQASVTWRS-FNIKQAIDII 352
[Close]
BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000018.1 (pep scaffold:Pmarinus_7.0:GL482463:8529:10142:1 gene:ENSPMAG00000000016.1 transcript:ENSPMAT00000000018.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 39.2762 bits (90), Expect = 1.175e-8
Identity = 25/81 (30.86%), Postives = 37/81 (45.68%), Query Frame = 3 
Query:  228 RVLCMAAMAPAHPPGL---------IYLPPNTTSILQPMDQ*VITNFKKLFTKHLFKRCYEVTENTNL-TLREFWKNHYNI 440
            + L +   AP HP  L         ++LPPN TS LQP+ + V    K  + + L  +    T+     T  EFW+  Y+I
Sbjct:  218 KALLVLDSAPEHPANLDDLAENVRVVFLPPNATSPLQPVGRVVTATLKAYYLRRLVGQLAAETDGEGKPTFGEFWRG-YDI 297

HSP 2 Score: 36.5798 bits (83), Expect = 1.175e-8
Identity = 22/52 (42.31%), Postives = 28/52 (53.85%), Query Frame = 2 
Query:  473 VTKRRLNSAWRKLWPDVVLER*GFDGFEP-IEGEIVSIGCSMGLE-VDEADV 622
            VT   +N AWR++WP+ V    GF    P I  EIV +    G + VDE DV
Sbjct:  311 VTPAHMNGAWRQIWPECVDGSTGFAKTVPEIRREIVGLARRAGFDGVDEGDV 362
[Close]
BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000003106.1 (pep scaffold:Pmarinus_7.0:GL476998:37517:41189:1 gene:ENSPMAG00000002845.1 transcript:ENSPMAT00000003106.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 51.2174 bits (121), Expect = 1.677e-7
Identity = 29/80 (36.25%), Postives = 45/80 (56.25%), Query Frame = 3 
Query:  252 APAHPPGL---------IYLPPNTTSILQPMDQ*VITNFKKLFTKHLFKRCYEVTENTNL-TLREFWKNHYNIVICLKLI 461
            AP HP  +         ++L PNTT++LQPMDQ V+++FK  + +  F +    T+     TL EFWK  ++I+  +K I
Sbjct:  244 APCHPVSVEGFDPNIKVVFLTPNTTALLQPMDQGVMSSFKAYYLRQTFAQAISATDKEGGPTLTEFWKG-FSILDAVKNI 322
[Close]
BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006798.1 (pep scaffold:Pmarinus_7.0:GL478691:31611:33359:1 gene:ENSPMAG00000006139.1 transcript:ENSPMAT00000006798.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 43.5134 bits (101), Expect = 6.422e-6
Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = 3 
Query:  228 RVLCMAAMAPAHPPGL---------IYLPPNTTSILQPMDQ-*VITNFKKLFTKHLFKRCYEVTENTNL-TLREFWKNHYNIVICLKLIDS 467
            +VL +   AP +P  L         + LPPNT S+LQP+DQ  V++ FK  + +    +  E T+  +  T+R+ WK  YNI   +  I S
Sbjct:  231 KVLLILDNAPGYPKHLANINPNVRVLLLPPNTASLLQPLDQGGVVSTFKAYYLRRTISQLLEGTDGPDKPTVRDCWK-AYNIRDAINNIKS 320

HSP 2 Score: 23.0978 bits (48), Expect = 6.422e-6
Identity = 11/44 (25.00%), Postives = 20/44 (45.45%), Query Frame = 2 
Query:  473 VTKRRLNSAWRKLWPDVVLER*GFDGFEPIEGEIVSIGCSMGLE 604
            V +  +N AW  +W + V+    F        ++V +G  +G E
Sbjct:  325 VKQSTMNCAWNAIWKECVIYLNCFPEMSTAVQDVVDLGRELGGE 368
[Close]
BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Medaka
Match: ENSORLT00000031980.1 (pep primary_assembly:ASM223467v1:3:6881985:6888319:-1 gene:ENSORLG00000025652.1 transcript:ENSORLT00000031980.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 58.5362 bits (140), Expect = 1.876e-10
Identity = 31/93 (33.33%), Postives = 52/93 (55.91%), Query Frame = 3 
Query:  219 VDIRVLCMAAMAPAHPPGLIY-------LPPNTTSILQPMDQ*VITNFKKLFTKHLFKRCYEVTE-NTNLTLREFWKNHYNIVICLKLIDSKV 473
            +D +VL +   A  H   L Y       LPPNTTS++QPMDQ +I  FK L+T++  +   +  + + + +L+++W+  Y I  CL+ I   +
Sbjct:  220 LDFKVLLLVDNAGGHADDLAYDCVQIKFLPPNTTSLIQPMDQGIIRAFKALYTRNTLQHLVDAMDSDQDSSLKDYWRG-YTIASCLQNIQRAI 311

HSP 2 Score: 25.7942 bits (55), Expect = 1.876e-10
Identity = 9/20 (45.00%), Postives = 13/20 (65.00%), Query Frame = 2 
Query:  467 QGVTKRRLNSAWRKLWPDVV 526
            Q +    LN+ W+KLWP+ V
Sbjct:  312 QEMKTETLNACWKKLWPEAV 331
[Close]
BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Medaka
Match: ENSORLT00000036785.1 (pep primary_assembly:ASM223467v1:22:11796267:11802170:-1 gene:ENSORLG00000024024.1 transcript:ENSORLT00000036785.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 54.299 bits (129), Expect = 7.765e-9
Identity = 23/62 (37.10%), Postives = 41/62 (66.13%), Query Frame = 3 
Query:  279 YLPPNTTSILQPMDQ*VITNFKKLFTKHLFKRCYEVTE-NTNLTLREFWKNHYNIVICLKLI 461
            +LPPNT+S++QPMDQ +I  FK L+T++  +   +  + + N + +++W+  Y I  CL+ I
Sbjct:  286 FLPPNTSSLIQPMDQGIIRTFKALYTRNTLQHLVDAMDSDQNFSFKDYWR-EYTIASCLQHI 346

HSP 2 Score: 24.6386 bits (52), Expect = 7.765e-9
Identity = 9/20 (45.00%), Postives = 11/20 (55.00%), Query Frame = 2 
Query:  467 QGVTKRRLNSAWRKLWPDVV 526
            Q +    LN  W KLWP+ V
Sbjct:  351 QEMKSETLNGCWEKLWPEAV 370
[Close]
BLAST of Tigger transposable element-derived protein 1 vs. Planmine SMEST
Match: SMESG000037674.1 (SMESG000037674.1)

HSP 1 Score: 49.2914 bits (116), Expect = 4.531e-7
Identity = 51/137 (37.23%), Postives = 78/137 (56.93%), Query Frame = 2 
Query:  467 QGVTKRRLNSAWRKLWPDVVLER*GFDGFE--PIE---GEIVSIGCSMGLEVDEADVANXXXXXXXXXXXXXXXXXQKVSHSEVMMXXXXXXXXXXXXXXXXXXISDILDKWQEVSDFVEKRHPEKLSTGRASALFD 862
            + VTKR + S  +KLWP    E   F+G E  P+E    +IVS+  +MGLEV+  D+  L++E  +ELTTE   EL  VS  EV+ E+ +E+      + +S  I ++L  W+  + ++EK HP+K     A  LF+
Sbjct:   21 EAVTKRTIISERKKLWPYGDGEC-NFEGVETLPVESLVNKIVSLATTMGLEVNVNDIHELVKEPIQELTTEEQMELHYVSQEEVVEEIMSEKEEGTINQQSSGAIREMLKSWETAASYIEKYHPDK---AVARQLFN 153
The following BLAST results are available for this feature:
BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 1
Match NameE-valueIdentityDescription
TIGD13.012e-734.41tigger transposable element derived 1 [Source:HGNC... [more]
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BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q96MW7|TIGD1_HUMAN1.446e-634.41Tigger transposable element-derived protein 1 OS=H... [more]
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BLAST of Tigger transposable element-derived protein 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4Y2S5W47.060e-5460.82Tigger transposable element-derived protein 1 OS=A... [more]
A0A4Y2LN429.237e-5363.04Tigger transposable element-derived protein 1 OS=A... [more]
A0A4Y2FE012.311e-5258.76Tigger transposable element-derived protein 1 OS=A... [more]
A0A4Y2UM763.179e-5159.79Tigger transposable element-derived protein 1 OS=A... [more]
A0A4Y2MZH83.352e-5159.79Tigger transposable element-derived protein 1 OS=A... [more]
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BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSPMAT00000005921.11.166e-1037.18pep scaffold:Pmarinus_7.0:GL487978:976:2666:1 gene... [more]
ENSPMAT00000003283.16.699e-933.71pep scaffold:Pmarinus_7.0:GL479064:1419:3178:1 gen... [more]
ENSPMAT00000000018.11.175e-830.86pep scaffold:Pmarinus_7.0:GL482463:8529:10142:1 ge... [more]
ENSPMAT00000003106.11.677e-736.25pep scaffold:Pmarinus_7.0:GL476998:37517:41189:1 g... [more]
ENSPMAT00000006798.16.422e-634.07pep scaffold:Pmarinus_7.0:GL478691:31611:33359:1 g... [more]
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BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSORLT00000031980.11.876e-1033.33pep primary_assembly:ASM223467v1:3:6881985:6888319... [more]
ENSORLT00000036785.17.765e-937.10pep primary_assembly:ASM223467v1:22:11796267:11802... [more]
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BLAST of Tigger transposable element-derived protein 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000037674.14.531e-737.23SMESG000037674.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30000766 ID=SMED30000766|Name=Tigger transposable element-derived protein 1|organism=Schmidtea mediterranea sexual|type=transcript|length=1033bp
TTTAGAAATTTTGAAATTGCAAAATCAGTGGTACCTTGAGATACGAATGT
TTTGAGATACAACATGAAATATTCTAAAATTTATACCTCGACATACAACG
AAAAATTTGAGATACGAATTTGCGAAGTGTGATAATCGCATAGGTGATCC
CTTGATGGCAGAGCGCTCGCTCAGCTTTCCTCCTGCTGCTTCTACCCGCT
ATCTCGCTCTGTTTGGTTGTTGACATCAGAGTCCTCTGTATGGCCGCCAT
GGCTCCTGCACACCCTCCTGGCCTTATCTATCTGCCACCCAATACAACAT
CTATACTTCAGCCCATGGATCAATAAGTTATCACCAATTTCAAGAAACTT
TTCACAAAGCATCTTTTCAAGCGTTGCTACGAAGTTACCGAAAATACTAA
CCTAACATTGAGGGAGTTCTGGAAGAATCATTACAACATTGTGATCTGTC
TTAAGCTTATAGATAGCAAGGTGTTACCAAAAGAAGATTGAACTCAGCTT
GGAGAAAATTATGGCCAGATGTTGTTTTAGAACGATAGGGATTTGATGGA
TTTGAACCTATTGAGGGGGAGATAGTATCCATTGGCTGCTCCATGGGCCT
AGAGGTAGACGAGGCAGATGTTGCTAATCTCATCGAGGAGCATGCTGAAG
AACTCACGACGGAGGCGTTGAAAGAGTTACAGAAGGTTTCCCACTCGGAG
GTAATGATGGAACTCAGCAATGAGGAGGTGGTCGAGCCGGAGGAGGAACT
TACTTCACGTGAAATTAGTGATATCCTTGACAAGTGGCAGGAAGTGTCTG
ATTTTGTGGAAAAAAGACACCCAGAGAAATTGTCTACAGGGAGAGCGAGT
GCTTTATTTGATGATATGTGTCTCACATTCTTTCGTAACATTTTAAAAAG
GAGTCAGAAACAGACCTCTCTTGATCGTTACGTTGTGAAGGTCTCACGCA
CTGAAAGTCAGAAAAGTGAGGCTAAAAAGCCATGACGTTAAAGTGATGAT
TAATAAATATTATGTGTGTTATTACTCGTTTAT
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protein sequence of SMED30000766-orf-1

>SMED30000766-orf-1 ID=SMED30000766-orf-1|Name=SMED30000766-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=131bp
MGLEVDEADVANLIEEHAEELTTEALKELQKVSHSEVMMELSNEEVVEPE
EELTSREISDILDKWQEVSDFVEKRHPEKLSTGRASALFDDMCLTFFRNI
LKRSQKQTSLDRYVVKVSRTESQKSEAKKP*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000074oocyte
PLANA:0000231vitelline gland
PLANA:0002089reproductive organ
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding