BED-type domain-containing protein

Overview
NameBED-type domain-containing protein
Smed IDSMED30000718
Length (bp)858
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of BED-type domain-containing protein (SMED30000718) t-SNE clustered cells

Violin plots show distribution of expression levels for BED-type domain-containing protein (SMED30000718) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30000718

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
enteric muscle cellSMED30000718 dd_Smed_v4_31188_0_1dd_Smed_v4PMID:30471994
Scimone et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Human
Match: ZBED4 (zinc finger BED-type containing 4 [Source:HGNC Symbol;Acc:HGNC:20721])

HSP 1 Score: 66.6254 bits (161), Expect = 1.067e-11
Identity = 35/131 (26.72%), Postives = 70/131 (53.44%), Query Frame = 3 
Query:  105 MNENLGNNLLCFAHLLKFCIKNVLKDASIIE-VLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEAT 494
            +NE   +++ CF+H +   +   +K   +++ +L   R +   +  S  AK  L + Q+   LP H +IQDV ++W++ F+++ER  ++K AI    +E    N    +  + + +++ +   LKPFE A+
Sbjct:  817 LNEGEHSSVQCFSHTVNLIVSEAIKSQRMVQNLLSLARKICERVHRSPKAKEKLAELQREYALPQHHLIQDVPSKWSTSFHMLERLIEQKRAINEMSVE---CNFRELISCDQWEVMQSVCRALKPFEAAS 944
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Human
Match: ZBED6 (zinc finger BED-type containing 6 [Source:HGNC Symbol;Acc:HGNC:33273])

HSP 1 Score: 50.8322 bits (120), Expect = 1.715e-6
Identity = 34/121 (28.10%), Postives = 57/121 (47.11%), Query Frame = 3 
Query:  135 CFAHLLKFCIKNVL-KDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEAT 494
            CF H L   I++   +  SI  +L   R    H  HS  A+ +L++ Q    LP   + QD    W S FY+++   +   +++ +L     + L +      + ++  +  ILKPFEEAT
Sbjct:  583 CFLHCLNMVIQDFFCEHKSIENMLVAARKTCHHFSHSVKARQILQEFQNDHQLPWKNLKQDETGHWISTFYMLKWLLEHCYSVHHSLGRASGVVLTS----LQWTLMTYVCDILKPFEEAT 699
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Zebrafish
Match: zbed4 (zinc finger, BED-type containing 4 [Source:ZFIN;Acc:ZDB-GENE-041210-305])

HSP 1 Score: 56.225 bits (134), Expect = 2.120e-8
Identity = 30/117 (25.64%), Postives = 60/117 (51.28%), Query Frame = 3 
Query:  135 CFAHLLKFCIKNVLKDASIIE-VLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPF 482
            CF H +   +   +K   +++ +L   R +   +  S  AK  L + QK+  LP +Q++QDV ++W + ++++ER  ++K AI       I+ N    +  + + ++  +   LKPF
Sbjct:  898 CFVHNIDLIVNEAIKSQRMVQNLLSIARKICERVHRSAKAKEKLAELQKVYQLPENQLVQDVPSKWKTSYFMLERLVEQKKAIDEM---SIECNFRELISCDQWEVMGSVCNALKPF 1011
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Zebrafish
Match: zbed4 (zinc finger, BED-type containing 4 [Source:ZFIN;Acc:ZDB-GENE-041210-305])

HSP 1 Score: 56.225 bits (134), Expect = 2.120e-8
Identity = 30/117 (25.64%), Postives = 60/117 (51.28%), Query Frame = 3 
Query:  135 CFAHLLKFCIKNVLKDASIIE-VLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPF 482
            CF H +   +   +K   +++ +L   R +   +  S  AK  L + QK+  LP +Q++QDV ++W + ++++ER  ++K AI       I+ N    +  + + ++  +   LKPF
Sbjct:  898 CFVHNIDLIVNEAIKSQRMVQNLLSIARKICERVHRSAKAKEKLAELQKVYQLPENQLVQDVPSKWKTSYFMLERLVEQKKAIDEM---SIECNFRELISCDQWEVMGSVCNALKPF 1011
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Zebrafish
Match: zbed4 (zinc finger, BED-type containing 4 [Source:ZFIN;Acc:ZDB-GENE-041210-305])

HSP 1 Score: 56.225 bits (134), Expect = 2.120e-8
Identity = 30/117 (25.64%), Postives = 60/117 (51.28%), Query Frame = 3 
Query:  135 CFAHLLKFCIKNVLKDASIIE-VLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPF 482
            CF H +   +   +K   +++ +L   R +   +  S  AK  L + QK+  LP +Q++QDV ++W + ++++ER  ++K AI       I+ N    +  + + ++  +   LKPF
Sbjct:  898 CFVHNIDLIVNEAIKSQRMVQNLLSIARKICERVHRSAKAKEKLAELQKVYQLPENQLVQDVPSKWKTSYFMLERLVEQKKAIDEM---SIECNFRELISCDQWEVMGSVCNALKPF 1011
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Zebrafish
Match: si:dkeyp-117b8.4 (si:dkeyp-117b8.4 [Source:ZFIN;Acc:ZDB-GENE-060526-362])

HSP 1 Score: 50.8322 bits (120), Expect = 9.516e-7
Identity = 32/124 (25.81%), Postives = 58/124 (46.77%), Query Frame = 3 
Query:  129 LLCFAHLLKFCIKNVLKDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEATTF 500
            LLC    LK C++  L   S+ + L   RA+V H +H+  A   L +  + +   +  ++ +   RW +   + E   + K  I + L EQ    +  +L D  + ++ EL+ +LK    A +F
Sbjct:  396 LLCAGQALKLCVQEGLCVESVRQALADARAIVLHFQHNVGASTALSQKAEAVNKESASLVLNDPGRWTTAIDMCESLLELKWVISSVLEEQ---KIATNLADHQWRLVHELVPVLKTVRIAASF 516
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Zebrafish
Match: si:dkeyp-117b8.4 (si:dkeyp-117b8.4 [Source:ZFIN;Acc:ZDB-GENE-060526-362])

HSP 1 Score: 50.8322 bits (120), Expect = 9.699e-7
Identity = 32/124 (25.81%), Postives = 58/124 (46.77%), Query Frame = 3 
Query:  129 LLCFAHLLKFCIKNVLKDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEATTF 500
            LLC    LK C++  L   S+ + L   RA+V H +H+  A   L +  + +   +  ++ +   RW +   + E   + K  I + L EQ    +  +L D  + ++ EL+ +LK    A +F
Sbjct:  483 LLCAGQALKLCVQEGLCVESVRQALADARAIVLHFQHNVGASTALSQKAEAVNKESASLVLNDPGRWTTAIDMCESLLELKWVISSVLEEQ---KIATNLADHQWRLVHELVPVLKTVRIAASF 603
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Xenopus
Match: ZBED4 (zinc finger, BED-type containing 4 [Source:NCBI gene;Acc:100270676])

HSP 1 Score: 67.781 bits (164), Expect = 4.096e-12
Identity = 40/147 (27.21%), Postives = 78/147 (53.06%), Query Frame = 3 
Query:  105 MNENLGNNLLCFAHLLKFCIKNVLKDASIIE-VLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEATTFYRFRIITNLKIIAI 542
            +NE+  +++ CF H +   +   +K   +++ +L   R +   +  ST AK  L + QK   LP H +IQDV ++WN+ F++++R  ++K AI    +E     LI+    + + +++ +   LKPFE A+      + T  ++I +
Sbjct:  794 LNESEHSSVQCFGHTVDLIVNEAIKSQRMVQNLLSIARKICERVHRSTKAKEKLAELQKEYDLPQHHLIQDVPSKWNTSFHMLDRLIEQKRAIDEMSIECSFRELIS---CDQWEVMQSVCHALKPFEAASREMSMHMATLSQVIPM 937
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000037725.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:5:64084055:64086405:-1 gene:ENSXETG00000014495.1 transcript:ENSXETT00000037725.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 63.5438 bits (153), Expect = 8.702e-11
Identity = 41/143 (28.67%), Postives = 71/143 (49.65%), Query Frame = 3 
Query:  117 LGN--NLLCFAHLLKFCIKN-VLKDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLK---DEDYIMLKELMMILKPFEEATTFYRFRIITNL 527
            LGN  ++ C AH+L   ++  V K   + ++L + R V GH +HS TA   L   Q+   LP  ++I D  TRWNS   + ER   ++ A+   L E        +L       ++++++   +++PF+E T       I++L
Sbjct:  170 LGNLTHVPCMAHVLNLIVQRFVSKYPGLQDILGQSRKVSGHFRHSYTAMACLADIQRRHKLPVRRLICDNQTRWNSTLMMFERLLQQQRAVNEYLFELGGRTGSAELGIFFPRYWVLMRDACRLMRPFDEVTVSRTEGTISDL 312
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000033161.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:9:42964964:42967541:1 gene:ENSXETG00000007775.1 transcript:ENSXETT00000033161.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 62.003 bits (149), Expect = 3.760e-10
Identity = 39/132 (29.55%), Postives = 66/132 (50.00%), Query Frame = 3 
Query:  117 LGN--NLLCFAHLLKFCIKN-VLKDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDL---KDEDYIMLKELMMILKPFEEAT 494
            LGN  ++ C AH+L   ++  V K   + + L++ R V GH + S TA   L   Q+   LP  ++I D  TRWNS   + ER   ++ A+   L E        +L       ++++++   +++PFEE T
Sbjct:  322 LGNLTHVPCMAHVLNLIVQRFVSKYPGLHDTLRQSRKVSGHFRCSYTAMARLADIQRRHKLPVRRLICDSQTRWNSTLMMFERLLQQQRAVNEYLFEMGGRTGSAELGIFSPRYWVLMRDACRLMRPFEEVT 453
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Xenopus
Match: far1 (fatty acyl-CoA reductase 1 [Source:Xenbase;Acc:XB-GENE-973776])

HSP 1 Score: 56.9954 bits (136), Expect = 1.392e-8
Identity = 35/129 (27.13%), Postives = 65/129 (50.39%), Query Frame = 3 
Query:  123 NNLLCFAHLLKFCIKNVLKDASIIE-VLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATL----LEQIKMNLINDLKDEDYIMLKELMMILKPFEEAT 494
            N++ CF H L   + + L++   I  +L+  R V  H  HS  A+ +L + Q    LP   +  + +  W S FY+++R  +++ AI   L    LE  ++ L +     ++ ++  L+ +L+PFE  T
Sbjct:  633 NSIPCFTHTLNLLVMDFLQNNHYISSMLEVARKVCSHFIHSARARRILSELQFQNHLPKQPLKSETLPHWTSTFYMLQRLLEQQRAIEEYLGSHKLETAELRLTS----SNWSLMACLVDLLQPFEMVT 757
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Mouse
Match: Zbed4 (zinc finger, BED type containing 4 [Source:MGI Symbol;Acc:MGI:2682302])

HSP 1 Score: 64.3142 bits (155), Expect = 5.215e-11
Identity = 32/131 (24.43%), Postives = 72/131 (54.96%), Query Frame = 3 
Query:  105 MNENLGNNLLCFAHLLKFCIKNVLKDASIIE-VLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEAT 494
            ++E   +++ CF+H +   +   +K   +++ +L   R +   +  S  A+  L + QK   LP HQ+IQDV ++W++ F+++ER  ++K A+       I+ N    +  + + +++ +  +L+PF+ A+
Sbjct:  816 LSEGEHSSVQCFSHTVNLIVSEAIKSQRMVQNLLSIARKLCERVHRSPRAREKLAELQKEYELPQHQLIQDVPSKWSTSFHMLERLIEQKRAVNEV---SIECNFRELISCDQWEVMQSVCHVLRPFDAAS 943
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Mouse
Match: Gm38394 (predicted gene, 38394 [Source:MGI Symbol;Acc:MGI:5614057])

HSP 1 Score: 50.8322 bits (120), Expect = 1.243e-6
Identity = 34/121 (28.10%), Postives = 57/121 (47.11%), Query Frame = 3 
Query:  135 CFAHLLKFCIKNVL-KDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEAT 494
            CF H L   I++   +  SI  +L   R    H  HS  A+ +L++ Q    LP   + QD    W S FY+++   +   +++ +L     + L +      + ++  +  ILKPFEEAT
Sbjct:  586 CFLHCLNIVIQDFFCEHKSIENMLVAARKTCHHFSHSVKARQILQEFQNDHQLPWKNLKQDETGHWISTFYMLKWLLEHCYSVHHSLGRASGVVLTS----LQWTLMTYVCDILKPFEEAT 702
[Close]
BLAST of BED-type domain-containing protein vs. UniProt/SwissProt
Match: sp|O75132|ZBED4_HUMAN (Zinc finger BED domain-containing protein 4 OS=Homo sapiens OX=9606 GN=ZBED4 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.124e-11
Identity = 35/131 (26.72%), Postives = 70/131 (53.44%), Query Frame = 3 
Query:  105 MNENLGNNLLCFAHLLKFCIKNVLKDASIIE-VLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEAT 494
            +NE   +++ CF+H +   +   +K   +++ +L   R +   +  S  AK  L + Q+   LP H +IQDV ++W++ F+++ER  ++K AI    +E    N    +  + + +++ +   LKPFE A+
Sbjct:  817 LNEGEHSSVQCFSHTVNLIVSEAIKSQRMVQNLLSLARKICERVHRSPKAKEKLAELQREYALPQHHLIQDVPSKWSTSFHMLERLIEQKRAINEMSVE---CNFRELISCDQWEVMQSVCRALKPFEAAS 944
[Close]
BLAST of BED-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q80WQ9|ZBED4_MOUSE (Zinc finger BED domain-containing protein 4 OS=Mus musculus OX=10090 GN=Zbed4 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 3.648e-10
Identity = 32/131 (24.43%), Postives = 72/131 (54.96%), Query Frame = 3 
Query:  105 MNENLGNNLLCFAHLLKFCIKNVLKDASIIE-VLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEAT 494
            ++E   +++ CF+H +   +   +K   +++ +L   R +   +  S  A+  L + QK   LP HQ+IQDV ++W++ F+++ER  ++K A+       I+ N    +  + + +++ +  +L+PF+ A+
Sbjct:  816 LSEGEHSSVQCFSHTVNLIVSEAIKSQRMVQNLLSIARKLCERVHRSPRAREKLAELQKEYELPQHQLIQDVPSKWSTSFHMLERLIEQKRAVNEV---SIECNFRELISCDQWEVMQSVCHVLRPFDAAS 943
[Close]
BLAST of BED-type domain-containing protein vs. TrEMBL
Match: A0A4C1XSR7 (Zinc finger BED domain-containing protein 4 OS=Eumeta variegata OX=151549 GN=ZBED4 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.442e-21
Identity = 50/139 (35.97%), Postives = 81/139 (58.27%), Query Frame = 3 
Query:   78 QWRS*H*NAMNENLGNNLLCFAHLLKFCIKNVLKDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEAT 494
            QWR     A+N++      C+ H L+  +K  LK+ + I+V+   R ++GH  HS TA+  L + QK + LP H+++QDV TRWNS FY++ R  ++K AI   + +      +  L +  + +L+E + +LKPFEE T
Sbjct:  299 QWRDNVVKAINDSQYVGKGCYIHTLQLAVKASLKEPNAIDVIASARKIIGHFNHSATAQEKLTQIQKELKLPEHKLVQDVTTRWNSTFYMINRSIEQKRAISLYITDNPSTPNLQQLTERQWEILRECITLLKPFEEVT 437
[Close]
BLAST of BED-type domain-containing protein vs. TrEMBL
Match: A0A4C1XTK6 (Zinc finger BED domain-containing protein 4 OS=Eumeta variegata OX=151549 GN=ZBED4 PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.362e-20
Identity = 47/131 (35.88%), Postives = 78/131 (59.54%), Query Frame = 3 
Query:  102 AMNENLGNNLLCFAHLLKFCIKNVLKDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEAT 494
            A+N++      C+ H L+  +K  LK+ ++I+V+   R +VGH   S TA+  L + QK + LP H+++QDV TRWNS FY++ R  ++K AI   + +      +  L +  + +L+E + +LKPFEE T
Sbjct:  266 AINDSQYVGKGCYIHTLQLAVKASLKEPNVIDVIASARKIVGHFNQSATAQEKLTQIQKELKLPEHKLVQDVTTRWNSTFYMINRLIEQKRAISLYITDNPSTANLQQLTERQWEILRECITLLKPFEEVT 396
[Close]
BLAST of BED-type domain-containing protein vs. TrEMBL
Match: A0A1A8IPZ6 (Dimer_Tnp_hAT domain-containing protein OS=Nothobranchius kuhntae OX=321403 GN=Nfu_g_1_025348 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.191e-20
Identity = 50/138 (36.23%), Postives = 81/138 (58.70%), Query Frame = 3 
Query:  135 CFAHLLKFCIKNVLKDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLE---QIKMNLINDLKDEDYIMLKELMMILKPFEEATTFYRFRIITNLKIIA 539
            CFAH L    +  LK  S+I +L R+R V G  + STTA + L++ Q+L+ LP H++I D++TRWNS + ++ERF +++ AI A LL    +     +  L + D +  +E++  LKP ++AT       +  L +IA
Sbjct:   15 CFAHSLNLASQKALKTQSVIRLLGRVRRVTGFFRRSTTASDQLKQKQRLLQLPAHRLITDIITRWNSSYDMIERFLEQQPAICAALLSPDVRRSAKEVFTLNESDIMCAEEVVRALKPMKDATMVMSEESVPTLSVIA 152
[Close]
BLAST of BED-type domain-containing protein vs. TrEMBL
Match: A0A1A8QR33 (Uncharacterized protein OS=Nothobranchius rachovii OX=451742 GN=Nfu_g_1_025348 PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.128e-19
Identity = 50/138 (36.23%), Postives = 81/138 (58.70%), Query Frame = 3 
Query:  135 CFAHLLKFCIKNVLKDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLE---QIKMNLINDLKDEDYIMLKELMMILKPFEEATTFYRFRIITNLKIIA 539
            CFAH L    +  LK  S+I +L R+R V G  + STTA + L++ Q+L+ LP H++I D++TRWNS + ++ERF +++ AI A LL    +     +  L + D +  +E++  LKP ++AT       +  L +IA
Sbjct:  202 CFAHSLNLASQKALKTQSVIRLLGRVRRVTGFFRRSTTASDQLKQKQRLLQLPAHRLITDIITRWNSSYDMIERFLEQQPAICAALLSPDVRKSAKEVFTLNESDIMCAEEVVRALKPMKDATLVMSEESVPTLSVIA 339
[Close]
BLAST of BED-type domain-containing protein vs. TrEMBL
Match: A0A1A8NK20 (BED-type domain-containing protein OS=Nothobranchius pienaari OX=704102 GN=Nfu_g_1_025348 PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.385e-19
Identity = 50/138 (36.23%), Postives = 81/138 (58.70%), Query Frame = 3 
Query:  135 CFAHLLKFCIKNVLKDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLE---QIKMNLINDLKDEDYIMLKELMMILKPFEEATTFYRFRIITNLKIIA 539
            CFAH L    +  LK  S+I +L R+R V G  + STTA + L++ Q+L+ LP H++I D++TRWNS + ++ERF +++ AI A LL    +     +  L + D +  +E++  LKP ++AT       +  L +IA
Sbjct:  260 CFAHSLNLASQKALKTQSVIRLLGRVRRVTGFFRRSTTASDQLKQKQRLLQLPAHRLITDIITRWNSSYDMIERFLEQQPAICAALLSPDVRKSAKEVFTLNESDIMCAEEVVRALKPMKDATLVMSEESVPTLSVIA 397
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000057362.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02001541.1:173309:174871:-1 gene:ENSAMXG00000043106.1 transcript:ENSAMXT00000057362.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 91.6633 bits (226), Expect = 1.858e-20
Identity = 46/148 (31.08%), Postives = 83/148 (56.08%), Query Frame = 3 
Query:  102 AMNENLGNNLLCFAHLLKFCIKNVLKDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLE---QIKMNLINDLKDEDYIMLKELMMILKPFEEATTFYRFRIITNLKII 536
             + E LG  + CFAH +    K+ +  A I  +L ++R VV     STTA  +L+  Q ++ LP+H++I DV TRWNS + ++ER+ +++ A+Y+ + +   + K   I+ L D +  + + L+ +LKP +  TT        ++ +I
Sbjct:  279 GLTEGLGPQISCFAHTVNLAAKSAISTAQISRLLAKVRKVVTFFHRSTTAAFILKTKQDMLTLPDHKLIHDVPTRWNSTYDMLERYVEQQAALYSAVTDKNMKKKTKDISLLTDSETKLTEGLIDVLKPLKNVTTLMSTETSPSVSMI 426
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000045953.1 (zinc finger BED domain-containing protein 1-like [Source:NCBI gene;Acc:111189856])

HSP 1 Score: 87.8113 bits (216), Expect = 3.645e-19
Identity = 48/138 (34.78%), Postives = 82/138 (59.42%), Query Frame = 3 
Query:   99 NAMNE-NLGNNLLCFAHLLKFCIKNVLKDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQ-IKMNLIN--DLKDEDYIMLKELMMILKPFEEATTF 500
            NA N   L  ++ CFAH +    +  L    I  +L ++R VV     STTA  +L+  Q+++ LP H++IQDV TRWNS + ++ R+ +++ A+Y+ L E+ +K N  +   L D+D  +L++++ +LKP +  TT 
Sbjct:  256 NASNAAGLSPHIGCFAHTVNLASQKGLGVNQISRLLGKVRRVVTFFHKSTTAAAVLKAKQEMLQLPPHKLIQDVATRWNSSYDMLTRYLEQQAAVYSALTEKDVKKNAKDLITLSDQDVTVLEDVVEVLKPMKTITTL 393
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000030135.1 (zinc finger BED domain-containing protein 1-like [Source:NCBI gene;Acc:111188279])

HSP 1 Score: 83.9593 bits (206), Expect = 8.671e-18
Identity = 51/156 (32.69%), Postives = 80/156 (51.28%), Query Frame = 3 
Query:   99 NAMNENLG------NNLLCFAHLLKFCIKNVLKDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLIND---LKDEDYIMLKELMMILKPFEEATTFYRFRIITNLKIIA 539
            NA N N+        ++ CFAH L    +   K   +  +L R+R V    + ST A + L++ Q L+ LP H++I DVVTRWNS + ++ERF +++  I A LL      +  D   L + D    +E++  LKP ++AT       +  L I+A
Sbjct:  203 NASNMNIAAKRADMTHIRCFAHSLNLASQKAPKLPKVERLLSRIRLVTTFFRRSTIASHQLKQKQDLLQLPKHRLITDVVTRWNSSYDMIERFLEQQPEICAALLSTEVRKIEKDVFTLSETDITCAEEVLKALKPMKDATLVMSEESMPTLAIVA 358
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000056372.1 (pep primary_assembly:Astyanax_mexicanus-2.0:3:3660209:3662739:-1 gene:ENSAMXG00000029351.1 transcript:ENSAMXT00000056372.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 81.6481 bits (200), Expect = 4.613e-17
Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 3 
Query:  135 CFAHLLKFCIKNVLKD-ASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEATTFYRFRIITNLKIIAID 545
            CFAH L   +K+ LK   +++E+ K+  A+V    HSTTA + L++ QK    P  +++Q V TRWNS+FY+ ER  ++K+A+   L    K +L   L  E++  +   +  L+PFEE T     R I+  K I+I 
Sbjct:  258 CFAHTLNLVVKDSLKAVPNLVEIQKKTSAIVSFFHHSTTATSKLKEVQKQQKFPEQKLLQSVETRWNSLFYMWERLSEQKDAVTTVLCLLGKSSLC--LTQEEWSEISLSLNALRPFEEVT-----REISAEKHISIS 388
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000030725.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000043.1:648734:652625:-1 gene:ENSAMXG00000030453.1 transcript:ENSAMXT00000030725.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 81.2629 bits (199), Expect = 7.421e-17
Identity = 47/144 (32.64%), Postives = 78/144 (54.17%), Query Frame = 3 
Query:  126 NLL---CFAHLLKFCIKNVLKDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLE-QIKMNLIN--DLKDEDYIMLKELMMILKPFEEATTFYRFRIITNLKIIA 539
            NLL   CFAH L    +  LK   +  +L R+R +      STTA + L++ QK++ LP H+++ DV TRWNS   +++RF +++ AI A LL  +++ N  +   L + D  + ++++  L P + AT          L +IA
Sbjct:  275 NLLHVGCFAHTLNLASQAALKTPPVARLLGRVRRIASFFHRSTTASHQLKEKQKILGLPAHKLVIDVTTRWNSALEMLQRFLEQQPAISAALLSPEVRRNESDLCTLSELDITVAEDVVKALGPLKAATLVMSEEKSPTLSVIA 418
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001841.1 (pep scaffold:Pmarinus_7.0:GL477152:41279:42850:-1 gene:ENSPMAG00000001672.1 transcript:ENSPMAT00000001841.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 77.0258 bits (188), Expect = 2.823e-16
Identity = 38/124 (30.65%), Postives = 73/124 (58.87%), Query Frame = 3 
Query:  126 NLLCFAHLLKFCIKNVLKDASIIEV-LKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEAT 494
            ++ C +H L+  +++ L   + +EV +K+ R +V H+KHS  A   L +HQ+ +  P H ++QDV TRWN ++ ++ER  +++ A+    L  ++ + I+     ++ +   ++ ILKPF  AT
Sbjct:  183 DIGCMSHTLQLVLRDALFTQTSVEVVIKKARKIVTHLKHSEQACRHLVEHQQTVKTPEHSLLQDVETRWNGMYLMLERLVEQRKAVN---LYSVQRSGIDSFSLAEWELAARVVKILKPFYTAT 303
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008230.1 (pep scaffold:Pmarinus_7.0:GL479508:145707:147445:-1 gene:ENSPMAG00000007442.1 transcript:ENSPMAT00000008230.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 68.5514 bits (166), Expect = 1.550e-13
Identity = 31/87 (35.63%), Postives = 53/87 (60.92%), Query Frame = 3 
Query:  123 NNLLCFAHLLKFCIKNVL-KDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAI 380
             ++ C +H L+  +++ L    S+  V+K+ R +V H KHS  A   L +HQ+ I  P H ++QDV TRWNS + ++ER  +++ A+
Sbjct:  225 TDIGCMSHTLQLVLRDALFTQTSVEAVVKKARKIVTHFKHSEQACRHLVEHQQTIKSPEHSLLQDVDTRWNSAYLMLERLVEQRKAV 311
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000035819.1 (pep primary_assembly:ASM223467v1:2:6014183:6016710:-1 gene:ENSORLG00000024444.1 transcript:ENSORLT00000035819.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 75.0998 bits (183), Expect = 6.538e-15
Identity = 51/169 (30.18%), Postives = 82/169 (48.52%), Query Frame = 3 
Query:  135 CFAHLLKFCIKNVLKD-ASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLIN-----DLKDEDYIMLKELMMILKPFEEATTFYRF----------RIITNLKIIAIDAKFKCEPTNILIKVYD 593
            C  H L   +++ LK+  +I   +   R +V H K S  A   L++ Q+ +  P H +IQDV TRWNS ++++ R  +++  + A +L    +N        DLK E + + +EL  IL PFE AT F             +++ NLK   + A    EP    +KV+ 
Sbjct:  257 CAGHTLNLVVQSTLKNNKTIASCVGSARCLVEHFKKSELACTKLKEKQQQMGKPLHMLIQDVSTRWNSTYHMLSRLLEQRWPVTA-VLSDPAVNPRGKHHYLDLKPEQWHISEELTQILGPFEGATEFLSGEKYVTLSALPQLVQNLKKSTLTA----EPETAQVKVFQ 420
[Close]
BLAST of BED-type domain-containing protein vs. Ensembl Medaka
Match: zbed4 (zinc finger BED-type containing 4 [Source:NCBI gene;Acc:101172119])

HSP 1 Score: 60.4622 bits (145), Expect = 7.382e-10
Identity = 33/120 (27.50%), Postives = 62/120 (51.67%), Query Frame = 3 
Query:  135 CFAHLLKFCIKNVLKDASIIE-VLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEA 491
            CF H +   +   +K   +++ +L   R +   +  S  AK  L + Q+   LP +Q++QDV ++W + F+++ER  ++KNAI       I+ N    +  + + ++  +   LKPFE A
Sbjct:  900 CFGHTIDLIVSEAIKSQRMVQNLLSIARKICERVHRSAKAKEKLVELQRAHQLPENQLVQDVPSKWRTSFFMLERLVEQKNAIDEM---SIECNFREIISCDQWEVMLSVCNALKPFEVA 1016
[Close]
BLAST of BED-type domain-containing protein vs. Planmine SMEST
Match: SMESG000050347.1 (SMESG000050347.1)

HSP 1 Score: 150.599 bits (379), Expect = 5.413e-48
Identity = 81/115 (70.43%), Postives = 89/115 (77.39%), Query Frame = 3 
Query:  345 IVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEATTFYR----------FRIITNLKIIAIDAKFKCEPTNILIKVYDDLESKINEIYFKYKYRMILPGK 659
            +VERF ++ NAIYATLLEQ KMNLINDLK+EDYIMLKELMMILKPFEEATTF               +  LKIIAIDAK KCE TNIL   YDDLES+IN+IYFKY+YRMIL GK
Sbjct:    1 MVERFLEQNNAIYATLLEQNKMNLINDLKNEDYIMLKELMMILKPFEEATTFGSAEKSSTASVILPTLNQLKIIAIDAKLKCEHTNILKNFYDDLESEINKIYFKYEYRMILLGK 115

HSP 2 Score: 48.1358 bits (113), Expect = 5.413e-48
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:  658 NELELIDKENCESIENTCHKEESILWKG 741
            +ELEL +KEN ESI+NTCHKEE ILWKG
Sbjct:  143 DELELFEKENYESIQNTCHKEEIILWKG 170

HSP 3 Score: 31.9574 bits (71), Expect = 5.413e-48
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 2 
Query:  746 DDRVYLEDEMMRYE 787
            DDRVYLEDEMMRYE
Sbjct:  172 DDRVYLEDEMMRYE 185
[Close]
BLAST of BED-type domain-containing protein vs. Planmine SMEST
Match: SMESG000078368.1 (SMESG000078368.1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.024e-32
Identity = 53/81 (65.43%), Postives = 61/81 (75.31%), Query Frame = 3 
Query:  447 MLKELMMILKPFEEATTFYR----------FRIITNLKIIAIDAKFKCEPTNILIKVYDDLESKINEIYFKYKYRMILPGK 659
            MLK+LMMILKPFEEATTF               +  LKIIAIDAK KCEPTNIL K+YDDLES+I++IYFKY+YR+IL GK
Sbjct:    1 MLKKLMMILKPFEEATTFVSTEKSSTASVILPTLNQLKIIAIDAKLKCEPTNILKKIYDDLESEISKIYFKYEYRVILLGK 81

HSP 2 Score: 46.9802 bits (110), Expect = 3.024e-32
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:  658 NELELIDKENCESIENTCHKEESILWK 738
            +ELEL +KEN ESIENTCHKEESILWK
Sbjct:  109 DELELFEKENWESIENTCHKEESILWK 135

HSP 3 Score: 30.8018 bits (68), Expect = 3.024e-32
Identity = 14/23 (60.87%), Postives = 18/23 (78.26%), Query Frame = 2 
Query:  716 RKKAYFGKVNDDRVYLEDEMMRY 784
            ++++   K  DDRVYLEDEMMRY
Sbjct:  128 KEESILWKDYDDRVYLEDEMMRY 150
[Close]
BLAST of BED-type domain-containing protein vs. Planmine SMEST
Match: SMESG000045018.1 (SMESG000045018.1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.098e-12
Identity = 35/125 (28.00%), Postives = 67/125 (53.60%), Query Frame = 3 
Query:  123 NNLLCFAHLLKFCIKN-VLKDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEAT 494
            +++ CFAH L+  I + ++   S+ ++L   R++VG  +HS  A+  L   Q  + +P  +++QDV TRWN+   ++    D K  + A   E    + + +L    + ++  ++  L PFE+AT
Sbjct:  303 DSISCFAHTLQLVINDSIMSQRSVKDILAISRSIVGKFRHSVLAQQHLSDLQTSLGVPKKKLVQDVQTRWNATLAMLRSLVDRKQVLGAYATE----HKLTNLDAHQWTLISHIIDTLSPFEDAT 423
[Close]
BLAST of BED-type domain-containing protein vs. Planmine SMEST
Match: SMESG000034450.1 (SMESG000034450.1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.666e-12
Identity = 36/127 (28.35%), Postives = 67/127 (52.76%), Query Frame = 3 
Query:  123 NNLLCFAHLLKFCIKN-VLKDASIIEVLKRMRAVVGHIKHSTTAKNLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKN--AIYATLLEQIKMNLINDLKDEDYIMLKELMMILKPFEEAT 494
            +++ CFAH L+  I + ++   S+  +L   R++VG  +HS  A+  L   Q  + +P  +++QDV TRWN+   ++    ++K     YAT  E      + +L    + ++  ++  L PFE+AT
Sbjct:  245 HSISCFAHTLQLVINDSIMSQRSVKNILAISRSIVGKFRHSVLAQQYLSDLQGSLGVPKKKLVQDVQTRWNATLAMLRSLVEQKQVLGAYATEHE------LKNLDAHQWTLISHIIDTLSPFEDAT 365
[Close]
BLAST of BED-type domain-containing protein vs. Planmine SMEST
Match: SMESG000064632.1 (SMESG000064632.1)

HSP 1 Score: 36.1946 bits (82), Expect = 1.016e-6
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 1 
Query:  808 QLSFIKNNHINFPGISK 858
            Q SFIKNNH+NFPGISK
Sbjct: 1078 QFSFIKNNHVNFPGISK 1094

HSP 2 Score: 34.2686 bits (77), Expect = 1.016e-6
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 2 
Query:  764 EDEMMRYEQFPSLHI 808
            +DEMMRYEQFPSLH+
Sbjct: 1060 KDEMMRYEQFPSLHM 1074
The following BLAST results are available for this feature:
BLAST of BED-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ZBED41.067e-1126.72zinc finger BED-type containing 4 [Source:HGNC Sym... [more]
ZBED61.715e-628.10zinc finger BED-type containing 6 [Source:HGNC Sym... [more]
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BLAST of BED-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of BED-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of BED-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
zbed42.120e-825.64zinc finger, BED-type containing 4 [Source:ZFIN;Ac... [more]
zbed42.120e-825.64zinc finger, BED-type containing 4 [Source:ZFIN;Ac... [more]
zbed42.120e-825.64zinc finger, BED-type containing 4 [Source:ZFIN;Ac... [more]
si:dkeyp-117b8.49.516e-725.81si:dkeyp-117b8.4 [Source:ZFIN;Acc:ZDB-GENE-060526-... [more]
si:dkeyp-117b8.49.699e-725.81si:dkeyp-117b8.4 [Source:ZFIN;Acc:ZDB-GENE-060526-... [more]
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BLAST of BED-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4
Match NameE-valueIdentityDescription
ZBED44.096e-1227.21zinc finger, BED-type containing 4 [Source:NCBI ge... [more]
ENSXETT00000037725.18.702e-1128.67pep primary_assembly:Xenopus_tropicalis_v9.1:5:640... [more]
ENSXETT00000033161.13.760e-1029.55pep primary_assembly:Xenopus_tropicalis_v9.1:9:429... [more]
far11.392e-827.13fatty acyl-CoA reductase 1 [Source:Xenbase;Acc:XB-... [more]
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BLAST of BED-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Zbed45.215e-1124.43zinc finger, BED type containing 4 [Source:MGI Sym... [more]
Gm383941.243e-628.10predicted gene, 38394 [Source:MGI Symbol;Acc:MGI:5... [more]
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BLAST of BED-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 2
Match NameE-valueIdentityDescription
sp|O75132|ZBED4_HUMAN5.124e-1126.72Zinc finger BED domain-containing protein 4 OS=Hom... [more]
sp|Q80WQ9|ZBED4_MOUSE3.648e-1024.43Zinc finger BED domain-containing protein 4 OS=Mus... [more]
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BLAST of BED-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4C1XSR72.442e-2135.97Zinc finger BED domain-containing protein 4 OS=Eum... [more]
A0A4C1XTK61.362e-2035.88Zinc finger BED domain-containing protein 4 OS=Eum... [more]
A0A1A8IPZ62.191e-2036.23Dimer_Tnp_hAT domain-containing protein OS=Nothobr... [more]
A0A1A8QR331.128e-1936.23Uncharacterized protein OS=Nothobranchius rachovii... [more]
A0A1A8NK201.385e-1936.23BED-type domain-containing protein OS=Nothobranchi... [more]
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BLAST of BED-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000057362.11.858e-2031.08pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
ENSAMXT00000045953.13.645e-1934.78zinc finger BED domain-containing protein 1-like [... [more]
ENSAMXT00000030135.18.671e-1832.69zinc finger BED domain-containing protein 1-like [... [more]
ENSAMXT00000056372.14.613e-1736.23pep primary_assembly:Astyanax_mexicanus-2.0:3:3660... [more]
ENSAMXT00000030725.17.421e-1732.64pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
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BLAST of BED-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSPMAT00000001841.12.823e-1630.65pep scaffold:Pmarinus_7.0:GL477152:41279:42850:-1 ... [more]
ENSPMAT00000008230.11.550e-1335.63pep scaffold:Pmarinus_7.0:GL479508:145707:147445:-... [more]
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BLAST of BED-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of BED-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of BED-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSORLT00000035819.16.538e-1530.18pep primary_assembly:ASM223467v1:2:6014183:6016710... [more]
zbed47.382e-1027.50zinc finger BED-type containing 4 [Source:NCBI gen... [more]
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BLAST of BED-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000050347.15.413e-4870.43SMESG000050347.1[more]
SMESG000078368.13.024e-3265.43SMESG000078368.1[more]
SMESG000045018.11.098e-1228.00SMESG000045018.1[more]
SMESG000034450.13.666e-1228.35SMESG000034450.1[more]
SMESG000064632.11.016e-688.24SMESG000064632.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30000718 ID=SMED30000718|Name=BED-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=858bp
TCAGAATATTTAAAAATCAAATTCAATGAAGTGATAAATGAATGGAATCT
CAGAAAAAAATATTTCTCTGTCGTACACAATGGAGGTCCTAACATTAAAA
TGCAATGAATGAAAACCTTGGAAATAATCTTTTATGTTTTGCACATCTTT
TAAAATTTTGCATTAAAAATGTATTAAAAGATGCTTCGATTATAGAAGTT
TTGAAAAGAATGCGTGCTGTGGTAGGACACATCAAACATAGTACCACTGC
AAAAAATTTGTTGGAAAAACATCAAAAATTAATATTACTTCCCAATCACC
AAGTTATTCAGGACGTTGTTACTAGATGGAATTCAGTTTTTTACATCGTA
GAAAGATTCTTTGACGAAAAAAATGCTATTTATGCAACATTACTAGAACA
GATCAAAATGAATTTAATTAATGATTTAAAGGACGAAGATTATATTATGC
TAAAAGAGTTAATGATGATTTTAAAACCCTTTGAAGAAGCCACAACTTTC
TACCGCTTCCGTATTATCACCAACTTAAAAATTATTGCAATTGATGCAAA
ATTTAAATGTGAACCTACCAATATATTAATAAAAGTTTATGATGATTTAG
AAAGTAAAATAAACGAAATATATTTTAAGTATAAATATAGAATGATATTG
CCTGGTAAATGAGCTTGAATTAATTGATAAAGAAAATTGCGAGTCTATTG
AGAACACTTGTCATAAGGAAGAAAGCATACTTTGGAAAGGTTAATGATGA
TCGAGTTTATTTAGAAGATGAAATGATGAGATATGAACAATTTCCTTCGT
TACATATCAATTAAGTTTTATAAAAAATAATCATATAAATTTTCCAGGAA
TTTCAAAA
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protein sequence of SMED30000718-orf-1

>SMED30000718-orf-1 ID=SMED30000718-orf-1|Name=SMED30000718-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=186bp
MNENLGNNLLCFAHLLKFCIKNVLKDASIIEVLKRMRAVVGHIKHSTTAK
NLLEKHQKLILLPNHQVIQDVVTRWNSVFYIVERFFDEKNAIYATLLEQI
KMNLINDLKDEDYIMLKELMMILKPFEEATTFYRFRIITNLKIIAIDAKF
KCEPTNILIKVYDDLESKINEIYFKYKYRMILPGK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0046983protein dimerization activity
GO:0003676nucleic acid binding
GO:0003677DNA binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0003104enteric muscle cell
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47241FAMILY NOT NAMEDcoord: 12..132
IPR012337Ribonuclease H-like superfamilySUPERFAMILYSSF53098Ribonuclease H-likecoord: 9..176