Fibronectin type III domain protein

Overview


Name	Fibronectin type III domain protein
Smed ID	SMED30000671
Length (bp)	1092

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Fibronectin type III domain protein (SMED30000671) t-SNE clustered cells

Violin plots show distribution of expression levels for Fibronectin type III domain protein (SMED30000671) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Fibronectin type III domain protein (SMED30000671) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Fibronectin type III domain protein (SMED30000671) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30000671

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
head region	SMED30000671	SMESG000043560.1	SmedASXL_076369	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
pharynx	SMED30000671	SMESG000043560.1	dd_Smed_v4_33732_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30000671	SMESG000043560.1	dd_Smed_v4_33732_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30000671	SMESG000043560.1	dd_Smed_v4_33732_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30000671	SMESG000043560.1	dd_Smed_v4_33732_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
head region	SMED30000671	SMESG000043560.1	dd_Smed_v6_33732_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of Fibronectin type III domain protein vs. Ensembl Xenopus
Match: ENSXETT00000056157.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:6:132588327:132589978:-1 gene:ENSXETG00000021027.1 transcript:ENSXETT00000056157.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 63.1586 bits (152), Expect = 8.941e-11
Identity = 50/166 (30.12%), Postives = 73/166 (43.98%), Query Frame = 1

Query:  157 LLILLMTLYMVKERTGLFTLLSRGKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKIYDCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISSNLNSTTIKTITSDNLIYNISYNTVGQF----------VRIEAANNLLSLCEVDVFG 624
            L +  + +Y  K  TG    L+R     QSS       +  A DG            + ++ C+HT+ND  A+W ++L+    V  +VI NR D  S R++ A + V  S  NS  +        + NIS  T+ QF          V I      LSLCEV+V+G
Sbjct:   54 LTLCEVEVYGKKSNTGTGKNLARTGDVMQSSTLEPQFAAETAVDG-------IAETNSSVHPCTHTDNDHPAWWRLDLKKTFKVESVVIVNRGDCCSERLLGAEIRVGDSADNSNPVC-----GSVTNISQATITQFCGGMEGRYVSVVIPGREEYLSLCEVEVYG 207

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BLAST of Fibronectin type III domain protein vs. Ensembl Xenopus
Match: ncapg2 (non-SMC condensin II complex subunit G2 [Source:Xenbase;Acc:XB-GENE-1002744])

HSP 1 Score: 63.929 bits (154), Expect = 9.154e-11
Identity = 53/162 (32.72%), Postives = 77/162 (47.53%), Query Frame = 1

Query:  154 ELLILLMTLYMVKERTGLFTLLSRGKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKIYDCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVI-SSNLNSTTIKTIT--SDNLIYNISYNTVGQF--VRIEAANNLLSLCEVDVFG 624
            E L L       +E  G   +   G+ T QSS Y     +S ANDG+ N          +   CSHT ND+ A+W ++L+    V  +VI NR D    R++ A V V  ++NLN+    T+T  S+  I    +   G++  V I      L LCEV+V+G
Sbjct:  150 EHLTLCEVEVYGEEVPGKVNVAVLGEAT-QSSTYRPEYSASNANDGDAN-------TDMRYGSCSHTGNDNPAWWQLDLKKRYKVDKVVIVNRGDCCGERLLGAQVRVGNTANLNNPLCGTVTDVSEETITVSCHRMEGRYLTVVIPGREETLQLCEVEVYG 303

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BLAST of Fibronectin type III domain protein vs. Ensembl Xenopus
Match: ncapg2 (non-SMC condensin II complex subunit G2 [Source:Xenbase;Acc:XB-GENE-1002744])

HSP 1 Score: 63.1586 bits (152), Expect = 1.616e-10
Identity = 53/162 (32.72%), Postives = 77/162 (47.53%), Query Frame = 1

Query:  154 ELLILLMTLYMVKERTGLFTLLSRGKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKIYDCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVI-SSNLNSTTIKTIT--SDNLIYNISYNTVGQF--VRIEAANNLLSLCEVDVFG 624
            E L L       +E  G   +   G+ T QSS Y     +S ANDG+ N          +   CSHT ND+ A+W ++L+    V  +VI NR D    R++ A V V  ++NLN+    T+T  S+  I    +   G++  V I      L LCEV+V+G
Sbjct:  150 EHLTLCEVEVYGEEVPGKVNVAVLGEAT-QSSTYRPEYSASNANDGDAN-------TDMRYGSCSHTGNDNPAWWQLDLKKRYKVDKVVIVNRGDCCGERLLGAQVRVGNTANLNNPLCGTVTDVSEETITVSCHRMEGRYLTVVIPGREETLQLCEVEVYG 303

HSP 2 Score: 53.9138 bits (128), Expect = 1.628e-7
Identity = 45/146 (30.82%), Postives = 68/146 (46.58%), Query Frame = 1

Query:  217 LSRGKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKIYDCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISSNLNSTTIKTITSDNLIYNISYNTV--------GQFVR--IEAANNLLSLCEVDVFG 624
            L+ G    QSS Y +G  +  A DG+ +       N      C+ T  DS A+W  ++     V  +VI NR D  SAR++ A V V  S  N+  +  I +D     +S +T+        G++V   I      L+LCEV+V+G
Sbjct:   28 LAYGADVKQSSTYGLGFSADRAIDGSKD-------NNMLKRPCTQTQKDSPAWWQADMINIYKVETVVIVNRMDCCSARLLGAEVRVGDSPDNNNPVCGIITD-----VSKSTITLCCNGLEGRYVSVVIPGREEHLTLCEVEVYG 161

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BLAST of Fibronectin type III domain protein vs. Ensembl Xenopus
Match: tpp1 (tripeptidyl peptidase I [Source:Xenbase;Acc:XB-GENE-997325])

HSP 1 Score: 61.6178 bits (148), Expect = 9.098e-10
Identity = 44/146 (30.14%), Postives = 67/146 (45.89%), Query Frame = 1

Query:  217 LSRGKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTK-----IYDCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISSNLNSTTIKTITSDNLIYNISYNTVGQFVR-----IEAANNLLSLCEVDVFG 624
            L+R     QSSLY  G + +          P + ++G+K      Y C+HTNND+  +W + LE    +  +VI NR D +  R++ A + V  S  N   I    +D     I+ +  G   R     I      L+LCEV+V+G
Sbjct:    3 LARKGEAKQSSLYINGPQFT----------PERAIDGSKETNVSKYPCAHTNNDTAPWWQLQLEKRYKIETVVIVNRMDEHRERLLGAEILVGDSADNDNPICGTITDVSQATITLSCNGMEGRYVSVVIPGRAEYLTLCEVEVYG 138

HSP 2 Score: 56.225 bits (134), Expect = 5.546e-8
Identity = 41/147 (27.89%), Postives = 71/147 (48.30%), Query Frame = 1

Query:  217 LSRGKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKIYD-----CSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSV----ISSNLNSTTIKTITSDNLIYNISYNTVGQFVR--IEAANNLLSLCEVDVFG 624
            L+R     QSS Y  G +           +  + ++G K+ D     C+HT+ D+ A+W ++L+    V  +VI NR D +S R++ A + V    + +N    TI  ++   +  + +  T G++V   I      L LCEV+V+G
Sbjct:  591 LARSGEARQSSTYGHGTQF----------IADRAIDGIKVTDIHKSPCTHTSQDNPAWWRLDLKKRYKVESVVIVNRMDEHSERLLGAEIRVGIFPVDNNPVCGTITDVSQAAITLSCN-GTEGRYVSVVIPGREEYLQLCEVEVYG 726

HSP 3 Score: 53.9138 bits (128), Expect = 2.859e-7
Identity = 44/151 (29.14%), Postives = 73/151 (48.34%), Query Frame = 1

Query:  217 LSRGKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKIYD-----CSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISSNLNSTTIKTITSDNLIYNISYNTV--------GQFVR--IEAANNLLSLCEVDVFG 624
            L+R     QSS Y  G +        Y +   + ++G K+ D     C+HT+ D+ A+W ++L+    V  +VI NR D +S R+  A + V +   N+  +  I +D     IS +T+        G++V   I      L+LCEV+V+G
Sbjct:  299 LARSGEARQSSTYGHGTQF-------YAE---RAIDGIKVTDIHKSPCTHTSQDNPAWWRLDLKKRYKVESVVIVNRMDEHSERLRGAEIRVGNVPQNNNPVCGIIND-----ISEDTITLHCNGMEGRYVSVVIPRRAEFLTLCEVEVYG 434

HSP 4 Score: 53.1434 bits (126), Expect = 4.401e-7
Identity = 43/143 (30.07%), Postives = 67/143 (46.85%), Query Frame = 1

Query:  217 LSRGKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKIY--DCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISS-NLNSTTIKTIT--SDNLIYNISYNTVGQFVR--IEAANNLLSLCEVDVFG 624
            L+R     QSS Y     +    DG         + GT I    CSHT  D   +W ++L+    V  +VI NR D  S+R+++A + +  S + N+    T+T  S+  I  +     G++V   I      L+LCEV+V+G
Sbjct:  445 LARSGKAQQSSFYGHTYTAETVIDG---------IKGTNIMRNPCSHTQEDYQPWWRLDLQKRYKVETVVIVNRRDCCSSRLLAAEIRIGDSVDNNNPVCGTVTDVSEATITLLCKGLEGRYVSVVIPGRAEYLTLCEVEVYG 578

HSP 5 Score: 50.8322 bits (120), Expect = 3.016e-6
Identity = 34/114 (29.82%), Postives = 58/114 (50.88%), Query Frame = 1

Query:  313 KTVNGTKIYD-----CSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISSNLNSTTI-KTITSDNLIYNISY--NTVGQF--VRIEAANNLLSLCEVDVFG 624
            + ++G K+ D     C+HTNN+   +W ++L+    V  +++ NR D  S R+  A + V  S  N+  +  TI   +   NI +     G++  V I      L+LCEV+V+G
Sbjct:  173 RAIDGVKLTDLHQGPCTHTNNEYQPWWQLDLKKRYKVKSVIVVNRGDCCSERLKGAEIRVGDSPTNNNPVCGTINDVSQATNILFCNGMEGRYLSVVIPGRKGPLTLCEVEVYG 286

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BLAST of Fibronectin type III domain protein vs. Ensembl Xenopus
Match: ENSXETT00000034809.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:6:133072291:133075842:-1 gene:ENSXETG00000011701.1 transcript:ENSXETT00000034809.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 57.7658 bits (138), Expect = 1.481e-9
Identity = 51/155 (32.90%), Postives = 73/155 (47.10%), Query Frame = 1

Query:  184 MVKERTGLFTLLSR-GKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKIYD--CSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISSNLNSTTIKTITSDNLIYNISYNTVGQFVR-----IEAANNLLSLCEVDVFG 624
            ++K++T L   L+R G  T  S   S G  + LA DG         V  T  Y+  CSHT ND+ A+W ++L+    V  +VI NR D +S R+  A + +  S  N+  +    +D L    +    G   R     I      LSLCEV+VFG
Sbjct:    9 LLKKKTSLGLNLARLGAATQSSDWLSHG--AHLATDG---------VKLTDHYEGSCSHTTNDNPAWWRLDLKVRYKVETVVIVNRMDGHSDRLFGAEIRIGDSADNNNPVCGTINDILQATTTLCCNGMEGRYVSVVIPGREEYLSLCEVEVFG 152

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BLAST of Fibronectin type III domain protein vs. TrEMBL
Match: A0A5G3LFG8 (FTP domain-containing protein OS=Xenopus tropicalis OX=8364 PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.404e-7
Identity = 50/166 (30.12%), Postives = 73/166 (43.98%), Query Frame = 1

Query:  157 LLILLMTLYMVKERTGLFTLLSRGKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKIYDCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISSNLNSTTIKTITSDNLIYNISYNTVGQF----------VRIEAANNLLSLCEVDVFG 624
            L +  + +Y  K  TG    L+R     QSS       +  A DG            + ++ C+HT+ND  A+W ++L+    V  +VI NR D  S R++ A + V  S  NS  +        + NIS  T+ QF          V I      LSLCEV+V+G
Sbjct:   54 LTLCEVEVYGKKSNTGTGKNLARTGDVMQSSTLEPQFAAETAVDG-------IAETNSSVHPCTHTDNDHPAWWRLDLKKTFKVESVVIVNRGDCCSERLLGAEIRVGDSADNSNPVC-----GSVTNISQATITQFCGGMEGRYVSVVIPGREEYLSLCEVEVYG 207

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BLAST of Fibronectin type III domain protein vs. TrEMBL
Match: A0A5G3JGI4 (Non-SMC condensin II complex subunit G2 OS=Xenopus tropicalis OX=8364 GN=ncapg2 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.437e-7
Identity = 53/162 (32.72%), Postives = 77/162 (47.53%), Query Frame = 1

Query:  154 ELLILLMTLYMVKERTGLFTLLSRGKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKIYDCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVI-SSNLNSTTIKTIT--SDNLIYNISYNTVGQF--VRIEAANNLLSLCEVDVFG 624
            E L L       +E  G   +   G+ T QSS Y     +S ANDG+ N          +   CSHT ND+ A+W ++L+    V  +VI NR D    R++ A V V  ++NLN+    T+T  S+  I    +   G++  V I      L LCEV+V+G
Sbjct:  150 EHLTLCEVEVYGEEVPGKVNVAVLGEAT-QSSTYRPEYSASNANDGDAN-------TDMRYGSCSHTGNDNPAWWQLDLKKRYKVDKVVIVNRGDCCGERLLGAQVRVGNTANLNNPLCGTVTDVSEETITVSCHRMEGRYLTVVIPGREETLQLCEVEVYG 303

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BLAST of Fibronectin type III domain protein vs. TrEMBL
Match: A0A3R5SPP4 (Coelomotrypsin OS=Asterias rubens OX=7604 GN=CLTR PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.844e-7
Identity = 55/161 (34.16%), Postives = 80/161 (49.69%), Query Frame = 1

Query:  202 GLFTLLSRGKPTNQSSLY---SVGRESSLANDGNYNQVPYKTVNGTKIYDCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISSNLNSTTIKTI--TSDNLIYNISYN------------TVGQFVRIEAANN---LLSLCEVDVFG 624
            G   LLS+GKPT+QSS+     V RES LA DGN +  P    N      C+ T+++   +W V+L  +  + +I I NR D Y  R+  A VSV ++  N  T +     S ++I + +                GQ+V IE + N    L+LCEV V+G
Sbjct:  688 GGLQLLSQGKPTSQSSVLISAGVARESGLAVDGNLS--PMFNEN-----SCTLTDDEKHPWWYVDLGKEYEIDHISIVNRFD-YGNRLKRAIVSVGNAIYNPNTFRQCGEISGSMIKDAALTPERTINIQCPAEITGQYVYIEQSRNAALALTLCEVQVYG 840

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BLAST of Fibronectin type III domain protein vs. TrEMBL
Match: K1RPD6 (Fucolectin-1 OS=Crassostrea gigas OX=29159 GN=CGI_10007747 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.020e-7
Identity = 50/150 (33.33%), Postives = 76/150 (50.67%), Query Frame = 1

Query:  229 KPTNQSSLYSVGRESS---LANDGNYNQVPYKTVNGTK--IYDCSHTNN-DSLAYWLVNLEGDCLVSYIVIYNRN-DSYSA------RIISATVSVISSNLNSTT-----IKTITSDNLIYNISYNTVGQFVRIEAANNLLSLCEVDVFG 624
            KP  QS+ YS   ESS   LA DGN         NGT   +  CS T   D+  +WLV+L+    + Y+ I+NR  D + A      R ++ TV +  S++++         T++    IY  +   +G+FV+I    + L+LCEV+VFG
Sbjct:   46 KPAKQSTTYSWAGESSPASLAVDGN---------NGTDFVVDKCSCTKGGDTNPWWLVDLQAVYHIDYVRIFNRGMDKWGADVANRLRDVTVTVGMTESDVSTPCGVFAGPGTLSQVVDIYCPNTLPMGRFVKISKTTDFLTLCEVEVFG 186

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BLAST of Fibronectin type III domain protein vs. TrEMBL
Match: A0A2T7PBU2 (FTP domain-containing protein OS=Pomacea canaliculata OX=400727 GN=C0Q70_10162 PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.338e-7
Identity = 55/143 (38.46%), Postives = 74/143 (51.75%), Query Frame = 1

Query:  232 PTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKI-YDCSHT---NNDSLAYWLVNLEGDCLVSYIVIYNRNDSY-SARIISATVSV--ISSNLN-STTI----KTITSDNLIYNISYNTVGQFVRIEAANNLLSLCEVDVFG 624
            P NQSS +     +  A DGN N        GT+    CSHT   N + + +W VNL    LVSYIVI NR DS  + R+ + TV +  + SN N S T+      +       N + +  GQFVRI   + LL+LCEV+V+G
Sbjct:   92 PCNQSSTWHNDWSAGKAVDGNRN--------GTRAGLSCSHTMDGNYEKVHWWQVNLRKLVLVSYIVIANRVDSCCTHRLANFTVELGRLESNGNISYTLCRYHGGVAGPLTTLNCTKSIWGQFVRISQEDELLTLCEVEVYG 226

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BLAST of Fibronectin type III domain protein vs. Ensembl Cavefish
Match: ENSAMXT00000002948.2 (pep primary_assembly:Astyanax_mexicanus-2.0:2:30964207:30969859:-1 gene:ENSAMXG00000002882.2 transcript:ENSAMXT00000002948.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 55.0694 bits (131), Expect = 4.261e-8
Identity = 55/196 (28.06%), Postives = 88/196 (44.90%), Query Frame = 1

Query:   88 LNTYINVLYGNIYCKIY*MNNVELLILLMTLY---MVKERTGLFTLLSRGKPTNQSSLYSVGRESSL-----ANDGNYNQVPYKTVNGTKIYDCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISSNLNST-------TIKTITSDNLI-YNISYNTVGQFVRIE-AANNLLSLCEVDVFG 624
            + +Y+N+    +  KI  +  V++ + L   +   ++ E  GL  L  +G+ T QSSL   G  + +     A DGN N    K         C+ T N+S  +W VNL     +S + + NR D  S  +  A + + +S  N         T+ +I +   + YN S    G +V +       LSLCEV+VFG
Sbjct:  194 VGSYVNIFLPGVE-KILTLCEVQVFVALTDAHKASLLPEEAGLRNLAIKGRAT-QSSLNGSGMWAGIGVAGNAIDGNRNSALAKG-------SCTQTANESSPWWRVNLHLKYSISAVALTNRGDCCSDGLDGAEIRIGNSIENEGKDNPICDTVSSIPAGQTVYYNCSSLLEGSYVTVVLPREGTLSLCEVEVFG 380

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BLAST of Fibronectin type III domain protein vs. Ensembl Cavefish
Match: ENSAMXT00000008051.2 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000995.1:49634:61503:-1 gene:ENSAMXG00000007830.2 transcript:ENSAMXT00000008051.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 55.4546 bits (132), Expect = 5.402e-8
Identity = 46/152 (30.26%), Postives = 75/152 (49.34%), Query Frame = 1

Query:  214 LLSRGKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKIYD-----CSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISSNLNS-------TTIKTITS-DNLIYNISYNTVGQFVR--IEAANNLLSLCEVDVFG 624
            L  RGK T          +SSLA DG+    P K ++  K  +     C+HT      +W V+L  +  ++ IVI NR D  + R+  A + V +S +N+         IK+I +  +  +++     G++V   I  +N +L+LCEV+VFG
Sbjct:  177 LAPRGKAT----------QSSLAFDGH----PSKAIDKNKDTNYHQGSCTHTVIQQNPWWRVDLLDEFTITSIVITNRGDCCAGRLEGAEIHVGNSLINNGNGNPRVEVIKSIPAGKSQTFHLKKEVSGRYVNLIIPGSNQILTLCEVEVFG 314

HSP 2 Score: 50.447 bits (119), Expect = 1.777e-6
Identity = 32/121 (26.45%), Postives = 63/121 (52.07%), Query Frame = 1

Query:  307 PYKTVNGTKIYD-----CSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSV---ISSNLNSTT----IKTITS-DNLIYNISYNTVGQFVR--IEAANNLLSLCEVDVFG 624
            PYK ++G    +     C+HT      +W ++L+ + +V+ + + NR D  S R+  A + +   +S++ NS      I +I++  +  + ++    G++V   I     +L+LCEV+VFG
Sbjct:   48 PYKAIDGKTTSEYSQGSCTHTETQDNPWWRLDLQDEYIVTSVTVTNRGDCCSERLNGAEIRIGNSLSNDGNSNPRVGVISSISAGKSQTFTLNQGVSGRYVNVIIPGKKRILTLCEVEVFG 168

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BLAST of Fibronectin type III domain protein vs. Ensembl Cavefish
Match: ENSAMXT00000050908.1 (pep primary_assembly:Astyanax_mexicanus-2.0:2:30949256:30953032:-1 gene:ENSAMXG00000032389.1 transcript:ENSAMXT00000050908.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 53.5286 bits (127), Expect = 1.146e-7
Identity = 36/105 (34.29%), Postives = 51/105 (48.57%), Query Frame = 1

Query:  343 CSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISS--------NLNSTTIKTITSDNLIYNISYNTVGQFVRI--EAANNLLSLCEVDVFGG 627
            CSHT  ++  +W V L G C V+ + I NR D  S RI  A + + +S         L +    T++   + Y     T G+FV I     + +LSLCEV VF G
Sbjct:  179 CSHTLTEANPWWRVELPGVCNVTSVTIVNREDCCSDRIKGAQIHIGNSLKNKGNDNKLVAVIGPTLSEITMTYKFKA-TRGRFVNIFLPGEDKILSLCEVKVFTG 282

HSP 2 Score: 49.2914 bits (116), Expect = 2.558e-6
Identity = 40/132 (30.30%), Postives = 60/132 (45.45%), Query Frame = 1

Query:  241 QSSLYSVGRESSLANDGNYNQVPYKTVNGTKIYDCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATV---SVISSNLNSTTIKTITSDNLIYNISYNTVGQFVRI--EAANNLLSLCEVDVF 621
            QSS Y  G   + A DGN N   +K         CSHT+ ++  +W + L     ++ + I NR D    RII A +   +++  N  + +I+  T             GQFV I    +  +L+LCEV VF
Sbjct:   29 QSSTYDSGHAQN-AVDGNSNANYWKG-------SCSHTSYETDPWWRLELPAVYNITSVTIVNRGDCCGKRIIGAEIQAFTLLEKNQKNKSIRKTTE------------GQFVNIFLPGSRKILTLCEVQVF 140

[Close]

BLAST of Fibronectin type III domain protein vs. Ensembl Cavefish
Match: si:ch73-359m17.2 (si:ch73-359m17.2 [Source:ZFIN;Acc:ZDB-GENE-141222-90])

HSP 1 Score: 53.1434 bits (126), Expect = 1.633e-7
Identity = 48/168 (28.57%), Postives = 77/168 (45.83%), Query Frame = 1

Query:  157 LLILLMTLYMVKERTGLFTLLSRGKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKIYDCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSV---ISSNLNSTTIKTITSDNL------IYNISYNTVGQFVRI--EAANNLLSLCEVDVFGG 627
            L +  + ++  +E   L   ++ G    QSS ++   ++  A DGN +   ++         C+HT ++   +W V L G  LV+ + I NR D    RII A + V   + +N N   +   T  NL       YN  +   G+FV I     N +L++CEV VF G
Sbjct:  152 LTLCEVQVFADEESVHLPENIAVGSRAVQSSTFNKLADAEHAIDGNSDSHYFRG-------SCTHTMHEKDPWWRVELPGVYLVTSVTITNRGDCCGFRIIGAQIRVGNSLKNNGNENKL-VATVGNLENGAEKTYN--FTAEGRFVNIFLPGENKILTVCEVKVFAG 309

[Close]

BLAST of Fibronectin type III domain protein vs. Ensembl Cavefish
Match: ENSAMXT00000008082.2 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000995.1:63101:75869:-1 gene:ENSAMXG00000007863.2 transcript:ENSAMXT00000008082.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 51.9878 bits (123), Expect = 4.093e-7
Identity = 36/129 (27.91%), Postives = 61/129 (47.29%), Query Frame = 1

Query:  295 YNQVPYKTVNGTK---------IYDCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATV----SVISSNLNSTTIKTITS----DNLIYNISYNTVGQFVR--IEAANNLLSLCEVDVFG 624
            Y +  YK ++G +            C+HT  +   +W ++LEG+  ++ I I NR D  S RI  A +    S+I+   N+  +  ++S     +  +N      G++V   I     +L+LCEV VFG
Sbjct:  183 YPENAYKAIDGNRNGNYFSNANYGSCTHTATEENPWWRLDLEGEYEITSITITNRGDCCSERIDGAEIRIGNSLINEGNNNPRVAVVSSIPAGKDKTFNFGGGVSGRYVNIIIPGKYRILTLCEVQVFG 311

[Close]

BLAST of Fibronectin type III domain protein vs. Planmine SMEST
Match: SMESG000043560.1 (SMESG000043560.1)

HSP 1 Score: 264.233 bits (674), Expect = 7.943e-89
Identity = 134/148 (90.54%), Postives = 138/148 (93.24%), Query Frame = 1

Query:  184 MVKERTGLFTLLSRGKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKIYDCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISSNLNSTTIKTITSDNLIYNISYNTVGQFVRIEAANNLLSLCEVDVFGG 627
            MVKERTGLFTLLSR KPTNQSSLY++GRESSLAND NYNQVPYKT  G  IYDCS T NDSLAYWLVNLEGDCLVSYIVI NRNDSYSARIISATVSVISSNLNSTTIKTITSDN+IYNISYNTVGQFVRIE ANNLL+LCEVDVFGG
Sbjct:    1 MVKERTGLFTLLSRDKPTNQSSLYNIGRESSLANDENYNQVPYKT--GNAIYDCSSTRNDSLAYWLVNLEGDCLVSYIVISNRNDSYSARIISATVSVISSNLNSTTIKTITSDNVIYNISYNTVGQFVRIEVANNLLTLCEVDVFGG 146

[Close]

BLAST of Fibronectin type III domain protein vs. Planmine SMEST
Match: SMESG000043486.1 (SMESG000043486.1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.510e-22
Identity = 67/165 (40.61%), Postives = 94/165 (56.97%), Query Frame = 1

Query:  154 ELLILLMTLYMVKERTGLFTLLSRGKPTNQSSLYSVGRESSLANDGNYNQ-VPYKTVNGTKIYDCSHTNNDSLA-YWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISSNLNSTTIK---TITSDNLIYNISYN-TVGQFVRIEAANN-LLSLCEVDVFGG 627
            ++L +++  Y +        LLSR KPTNQ++  S    SSLANDGNY+Q +PY          CSHT + S    W+VNL  +  +++IVIYNR D  S R I A + +++  L  T +K    I++D  IYN+S N  +G+ VRI A     L LCE+D FGG
Sbjct:    3 KILAIIIIYYHLLNELNSSQLLSRFKPTNQTTTLS-SFVSSLANDGNYDQNIPY----------CSHTADHSYGGVWVVNLLDNYQINFIVIYNRQDCCSNRTIGAYIELMADYL--TPVKWCGNISTDEPIYNVSCNGNIGRMVRITATQKEALQLCEIDCFGG 154

[Close]

BLAST of Fibronectin type III domain protein vs. Planmine SMEST
Match: SMESG000014445.1 (SMESG000014445.1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.926e-18
Identity = 55/140 (39.29%), Postives = 79/140 (56.43%), Query Frame = 1

Query:  214 LLSRGKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKIYDCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISSN--LNSTTIKTITSDNLIYNISYNTVGQFVRIEAAN-NLLSLCEVDVFG 624
            +LS+GKP +QSS Y +   +S A DGN  Q    ++N  K   CSHTN DS  +W+V+L+G   ++ + I+NRN   S R++ A V V+ SN  + S   K  T D++        +G  VRI  A    L+LCEV V+G
Sbjct:   19 MLSQGKPASQSSDY-LSFVASYAVDGNLGQ----SLNKDK---CSHTNKDSQPWWMVDLQGSYTITSVTIFNRNSFVSNRLVGAIVEVLDSNGVVVSRCGKIKTDDSVHILRCKKRIGSKVRIRMARPEYLTLCEVQVYG 150

[Close]

BLAST of Fibronectin type III domain protein vs. Planmine SMEST
Match: SMESG000071164.1 (SMESG000071164.1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.975e-18
Identity = 63/171 (36.84%), Postives = 99/171 (57.89%), Query Frame = 1

Query:  142 MNNVELLIL--LMTLYMVKERTGL--FTLLSRGKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKIYDCSHTNNDSL-AYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISSNLNSTTIKTITSDNL--IYNISYNT-VGQFVRIEAAN-NLLSLCEVDVFGG 627
            M  V LL+   +   Y +  + G+  F+LLSR KPT QSS Y     S+LA DG Y+ V  K   G     C+HT++ +L A+W+V+L     +S+I  YNR D    RII  ++S++++ +N TT   IT      IYN+S    +G++V++  +N ++L +CE++ FGG
Sbjct:    1 MKQVNLLLKSNIFLFYFLGIQYGIQSFSLLSRNKPTQQSSDY-FKYISNLAVDGIYDGVISKA--GINYAVCAHTDDTALSAWWIVDLLDTYAISHIYFYNRVDCCYDRIIGVSISLLNA-VNQTTHTCITFKQYQKIYNVSCGMNIGRYVQVTTSNSSILQICELECFGG 167

[Close]

BLAST of Fibronectin type III domain protein vs. Planmine SMEST
Match: SMESG000014441.1 (SMESG000014441.1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.882e-17
Identity = 53/143 (37.06%), Postives = 76/143 (53.15%), Query Frame = 1

Query:  214 LLSRGKPTNQSSLYSVGRESSLANDGNYNQVPYKTVNGTKIYDCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDSYSARIISATVSVISSNLNSTTIKTIT-SDNLIYNISYNT----VGQFVRIE-AANNLLSLCEVDVFG 624
            LLSRGKP  QSS+Y     +  A DGN  Q   K       + CS T+ND+  +W+VNL  +  ++ + I+NR D +S RI  A V V+  N   T +  I  +DN + N+  N      G  VR++      L+LCEV+V+G
Sbjct:   19 LLSRGKPAYQSSVYE-DYHAGYAVDGNNGQHLEK-------HKCSQTSNDNRPWWMVNLTVEAKITLVTIFNRQDQFSERIEGAVVEVLDKNDEVTGLCGIVMADNSVINLWCNQRAGIFGSKVRVKLERQEYLTLCEVEVYG 153

The following BLAST results are available for this feature:

BLAST of Fibronectin type III domain protein vs. Ensembl Human
BLAST of Fibronectin type III domain protein vs. Ensembl Celegans
BLAST of Fibronectin type III domain protein vs. Ensembl Fly
BLAST of Fibronectin type III domain protein vs. Ensembl Zebrafish
BLAST of Fibronectin type III domain protein vs. Ensembl Xenopus
BLAST of Fibronectin type III domain protein vs. Ensembl Mouse
BLAST of Fibronectin type III domain protein vs. UniProt/SwissProt
BLAST of Fibronectin type III domain protein vs. TrEMBL
BLAST of Fibronectin type III domain protein vs. Ensembl Cavefish
BLAST of Fibronectin type III domain protein vs. Ensembl Sea Lamprey
BLAST of Fibronectin type III domain protein vs. Ensembl Yeast
BLAST of Fibronectin type III domain protein vs. Ensembl Nematostella
BLAST of Fibronectin type III domain protein vs. Ensembl Medaka
BLAST of Fibronectin type III domain protein vs. Planmine SMEST

BLAST of Fibronectin type III domain protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Fibronectin type III domain protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Fibronectin type III domain protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Fibronectin type III domain protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Fibronectin type III domain protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSXETT00000056157.1	8.941e-11	30.12	pep primary_assembly:Xenopus_tropicalis_v9.1:6:132...	[more]
ncapg2	9.154e-11	32.72	non-SMC condensin II complex subunit G2 [Source:Xe...	[more]
ncapg2	1.616e-10	32.72	non-SMC condensin II complex subunit G2 [Source:Xe...	[more]
tpp1	9.098e-10	30.14	tripeptidyl peptidase I [Source:Xenbase;Acc:XB-GEN...	[more]
ENSXETT00000034809.1	1.481e-9	32.90	pep primary_assembly:Xenopus_tropicalis_v9.1:6:133...	[more]

BLAST of Fibronectin type III domain protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Fibronectin type III domain protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Fibronectin type III domain protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A5G3LFG8	1.404e-7	30.12	FTP domain-containing protein OS=Xenopus tropicali...	[more]
A0A5G3JGI4	1.437e-7	32.72	Non-SMC condensin II complex subunit G2 OS=Xenopus...	[more]
A0A3R5SPP4	1.844e-7	34.16	Coelomotrypsin OS=Asterias rubens OX=7604 GN=CLTR ...	[more]
K1RPD6	2.020e-7	33.33	Fucolectin-1 OS=Crassostrea gigas OX=29159 GN=CGI_...	[more]
A0A2T7PBU2	2.338e-7	38.46	FTP domain-containing protein OS=Pomacea canalicul...	[more]

BLAST of Fibronectin type III domain protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSAMXT00000002948.2	4.261e-8	28.06	pep primary_assembly:Astyanax_mexicanus-2.0:2:3096...	[more]
ENSAMXT00000008051.2	5.402e-8	30.26	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
ENSAMXT00000050908.1	1.146e-7	34.29	pep primary_assembly:Astyanax_mexicanus-2.0:2:3094...	[more]
si:ch73-359m17.2	1.633e-7	28.57	si:ch73-359m17.2 [Source:ZFIN;Acc:ZDB-GENE-141222-...	[more]
ENSAMXT00000008082.2	4.093e-7	27.91	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]

BLAST of Fibronectin type III domain protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Fibronectin type III domain protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Fibronectin type III domain protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Fibronectin type III domain protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Fibronectin type III domain protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000043560.1	7.943e-89	90.54	SMESG000043560.1	[more]
SMESG000043486.1	1.510e-22	40.61	SMESG000043486.1	[more]
SMESG000014445.1	5.926e-18	39.29	SMESG000014445.1	[more]
SMESG000071164.1	5.975e-18	36.84	SMESG000071164.1	[more]
SMESG000014441.1	1.882e-17	37.06	SMESG000014441.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30000671 ID=SMED30000671|Name=Fibronectin type III domain protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1092bp
GCAATTTGAAAGAGAATTTTCCTCTCGTTTGTTGCAGAATCCAATGATTC
AACGCCTTGAAGAATCAATGTGGGCACCGCTTTTTGTTTAAACACTTATA
TTAATGTTTTATATGGTAATATTTATTGCAAAATATATTAAATGAATAAT
GTGGAATTACTTATCTTATTAATGACCCTATATATGGTAAAAGAAAGGAC
AGGACTCTTTACACTATTGTCCAGGGGCAAGCCTACAAATCAGTCATCAC
TATATAGTGTCGGGAGGGAATCGTCCCTAGCTAATGATGGGAACTATAAC
CAAGTTCCTTACAAAACGGTGAACGGGACAAAAATATATGACTGCTCCCA
CACTAACAATGATTCTCTGGCCTATTGGTTGGTCAATCTTGAAGGTGACT
GCCTGGTCAGTTACATTGTTATCTATAACAGAAATGATTCATATTCGGCA
AGAATAATTTCAGCAACCGTATCTGTCATTTCCAGTAATTTGAATTCGAC
AACAATTAAAACAATCACGTCTGATAATTTAATATATAATATTTCATACA
ATACAGTCGGACAATTTGTGAGAATCGAGGCGGCCAACAATTTACTCTCT
CTTTGCGAAGTTGATGTTTTCGGAGGTAATTAATAATTAATTATAAATAT
TTTATTAATGTTCATGCAAAATTCAATGAGATATTTTACATTTGTCAGTT
AATATGAGTTTTATATATTTTATATATATTTTGTGATGCCTAAATTTGAT
TTCACTGGGGGAGGGGATGCCATTCAGGGAGCTGGAGCAAATACTTGCCG
TTCCGGATGTTAGTTACTTATTCTTTTATTCGTTAACGATGAAATGAATA
AGAAATAGAGCGATTCTTTCGGCCTTGGACAAATGAGATGGACATTTTGC
TCTCTTATGCAATTGTTTTAATGAAGCTTCGAATTTTGGTAGCCAAATTT
AAAGAAGCATCTCTACTTCCATATTCCAAACTATTGCCAAAATGAATAGA
GACGCCTTTCAAATGAAAATTGAGAGGAAAGTTTTCTTTTTTTATTATAA
TAAGAGAAGCTTTGATTATCTTCGTTATTGTTTTATACCCCG

protein sequence of SMED30000671-orf-1

>SMED30000671-orf-1 ID=SMED30000671-orf-1|Name=SMED30000671-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=164bp
MNNVELLILLMTLYMVKERTGLFTLLSRGKPTNQSSLYSVGRESSLANDG
NYNQVPYKTVNGTKIYDCSHTNNDSLAYWLVNLEGDCLVSYIVIYNRNDS
YSARIISATVSVISSNLNSTTIKTITSDNLIYNISYNTVGQFVRIEAANN
LLSLCEVDVFGGN*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0004629	phospholipase C activity
GO:0008270	zinc ion binding
GO:0016788	hydrolase activity, acting on ester bonds

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000099	neuron
PLANA:0000418	head

Vocabulary: **INTERPRO**
Term	Definition
IPR000421	FA58C
IPR008979	Galactose-bd-like_sf

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000421	Coagulation factor 5/8 C-terminal domain	PFAM	PF00754	F5_F8_type_C	coord: 49..149 e-value: 1.2E-6 score: 28.6
IPR008979	Galactose-binding-like domain superfamily	GENE3D	G3DSA:2.60.120.260		coord: 26..163 e-value: 2.1E-23 score: 84.9
IPR008979	Galactose-binding-like domain superfamily	SUPERFAMILY	SSF49785	Galactose-binding domain-like	coord: 26..161
None	No IPR available	PANTHER	PTHR45713	FAMILY NOT NAMED	coord: 26..162

Main menu

Fibronectin type III domain protein

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Owlery

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