SMED30000650

Overview
NameSMED30000650
Smed IDSMED30000650
Length (bp)601
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30000650 (SMED30000650) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30000650 (SMED30000650) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30000650

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
reproductive organSMED30000650SMESG000019723.1 Contig17025newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30000650SMESG000019723.1 Contig17025uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30000650 vs. TrEMBL
Match: A0A2G8LCX0 (Integrase catalytic domain-containing protein OS=Stichopus japonicus OX=307972 GN=BSL78_04960 PE=4 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.747e-58
Identity = 101/198 (51.01%), Postives = 131/198 (66.16%), Query Frame = -2 
Query:    4 ESKCHYCKRRKAKGINQLMAPIPSFRFQ-GTLRSFARVGFDFTGPFLTKQGRRNVRKGRYLCLFTCLESREVHLELAHRLGTDFFIRALLIFISRRGQPEYIISVNGRNVVGALKEVREL--NIDNYRVQRELSKG--NTGWIFNPPSPPHFGGVFEYIIKTVKRALVGIDDNAELNDEELATVMTGVEWILNSRPLT 582
            E+ C+ CKR K +G  Q+MAP+P  R    TLR+F +V  DF GPFLTKQGR  ++  RYLCLFTC+++R VHLE+A  L TD FI  L  F SRRG P  I S NG N VGA  E  +L   ID  +V+R+ SK   N  W+ NPP  PHFGG+ E +IK+ KRA+  I +NA++ DEEL + + G E ++NSRP+T
Sbjct:   77 ENACNECKRGKPRGGQQIMAPLPKSRTNVDTLRAFDKVSVDFAGPFLTKQGRGKIKTKRYLCLFTCMKTRAVHLEMAFGLDTDSFINCLYRFTSRRGIPSEIRSDNGTNFVGARNEFIKLFDTIDKAKVERDTSKKGINWKWVLNPPLAPHFGGIHESMIKSAKRAIYAILENADITDEELFSAIVGAEGLINSRPIT 274
[Close]
BLAST of SMED30000650 vs. TrEMBL
Match: A0A2B4RV04 (Integrase catalytic domain-containing protein OS=Stylophora pistillata OX=50429 GN=AWC38_SpisGene14531 PE=4 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.541e-57
Identity = 101/203 (49.75%), Postives = 132/203 (65.02%), Query Frame = -2 
Query:    4 KLFETVESKCHYCKRRKAKGI-NQLMAPIPSFRFQGTLRSFARVGFDFTGPFLTKQGRRNVRKGRYLCLFTCLESREVHLELAHRLGTDFFIRALLIFISRRGQPEYIISVNGRNVVGALKEVREL--NIDNYRVQRELSKGN-TGWIFNPPSPPHFGGVFEYIIKTVKRALVGIDDNAELNDEELATVMTGVEWILNSRPLT 600
            ++  +V   C  C+RR  K I NQ+MAP+P  R Q +L +F +VG D+ GPFLTK GR   R  RYLCLFTCL +R VHLE+++ L TD FI       SRRG P Y+IS NG N VG  +E+REL   +D  R+ +E SK +   W FNPPS PHFGGVFE +IK+ K+ +  I  +A++ DEEL   + G E +LNSRP+T
Sbjct:  491 RMVRSVTEACAECRRRFTKRIGNQMMAPLPKSRLQSSLWAFEKVGVDYGGPFLTKHGRGRTRAKRYLCLFTCLTTRAVHLEMSYSLDTDSFINTFTRMTSRRGTPTYVISDNGTNFVGTERELRELVEALDTDRITQETSKYHPIDWTFNPPSAPHFGGVFEALIKSAKKVIKAILGDADVTDEELDKAICGAEQLLNSRPIT 693
[Close]
BLAST of SMED30000650 vs. TrEMBL
Match: A0A2G8KB92 (Integrase catalytic domain-containing protein OS=Stichopus japonicus OX=307972 GN=BSL78_17882 PE=4 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.735e-51
Identity = 91/177 (51.41%), Postives = 114/177 (64.41%), Query Frame = -2 
Query:    4 MAPIPSFRFQGTLRSFARVGFDFTGPFLTKQGRRNVRKGRYLCLFTCLESREVHLELAHRLGTDFFIRALLIFISRRGQPEYIISVNGRNVVGALKEVREL--NIDNYRVQRELSKGNTGWIFNPPSPPHFGGVFEYIIKTVKRALVGIDDNAELNDEELATVMTGVEWILNSRPLT 528
            MAP+PS R +   R+FAR   DF GPFL KQGR  ++  RYLC FTCL SR VHLE+A+ L TD F+ AL   I+RRG P  +IS NG N  GA K++REL   +D  ++ R  +     W FNPP  PHFGGV E +IK  K+A+  +   A++ DEEL TV T  E +LNSRPLT
Sbjct:    1 MAPLPSIRVKIPFRAFARTSVDFAGPFLAKQGRGRIKLKRYLCFFTCLSSRAVHLEMAYGLDTDSFLNALNRMINRRGVPVEMISDNGTNFKGAEKKLRELVDRMDKDKMTRSTANQMIKWHFNPPLSPHFGGVHETMIKGAKKAIKTVVYKADITDEELTTVFTSAEALLNSRPLT 177
[Close]
BLAST of SMED30000650 vs. TrEMBL
Match: A0A2B4RBG6 (Nucleotide-binding oligomerization domain-containing protein 2 OS=Stylophora pistillata OX=50429 GN=Nod2 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 9.728e-51
Identity = 88/195 (45.13%), Postives = 123/195 (63.08%), Query Frame = -2 
Query:    4 ESKCHYCKRRKAKGINQLMAPIPSFRFQGTLRSFARVGFDFTGPFLTKQGRRNVRKGRYLCLFTCLESREVHLELAHRLGTDFFIRALLIFISRRGQPEYIISVNGRNVVGALKEVREL--NIDNYRVQRELSKGNTGWIFNPPSPPHFGGVFEYIIKTVKRALVGIDDNAELNDEELATVMTGVEWILNSRPLT 582
            E +C+ C+RRKAK   Q+MAP+P  R + +LR+FA+   D+ GPF+T Q RR  R+ R LCLFTCL SR V++E+A+ L TD F+ A    ++RRG P  ++  NG N+VG  +E+ +L   +D  ++ +  +     W  NPP  PHFGG  E +IK  KRA+     N ++ DEEL T  TG E +LNSRPLT
Sbjct: 1653 EKECNECRRRKAKAAKQIMAPLPQIRLRYSLRAFAQTAVDYGGPFITVQARRPRRQKRNLCLFTCLASRAVYVEMAYALDTDAFLNAFYRMVNRRGLPREMLCDNGGNLVGGNRELSDLVKELDQEKIAKSTANQGIKWQSNPPHAPHFGGAHEIMIKGAKRAVYATLGNVDITDEELMTAFTGAEALLNSRPLT 1847
[Close]
BLAST of SMED30000650 vs. TrEMBL
Match: A0A2B4S5H1 (Integrase catalytic domain-containing protein OS=Stylophora pistillata OX=50429 GN=AWC38_SpisGene11684 PE=4 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.881e-48
Identity = 86/193 (44.56%), Postives = 119/193 (61.66%), Query Frame = -2 
Query:    7 ESKCHYCKRRKAKGINQLMAPIPSFRFQGTLRSFARVGFDFTGPFLTKQGRRNVRKGRYLCLFTCLESREVHLELAHRLGTDFFIRALLIFISRRGQPEYIISVNGRNVVGALKEVRELN-IDNYRVQRELSKGNTGWIFNPPSPPHFGGVFEYIIKTVKRALVGIDDNAELNDEELATVMTGVEWILNSRPL 582
            E +C  C+RRKA    Q+MAP+P    + +LR+F++   DF GPF+TKQGR    + RYLCLFTCL +R VHLE+A  L TD F+ A     S+RG  E ++  NG N+VG   E+++L  +D  +VQ         W FNPP  PHF G  E +IK  K+A+  I + A++ DEEL + + G E ++NSRPL
Sbjct:  672 EKECMQCRRRKATSAKQIMAPLPELCMRKSLRAFSQTSVDFGGPFITKQGRGKTCQKRYLCLFTCLATRAVHLEVAFSLDTDSFLSAFFRMASQRGLAEDVMCDNGTNLVGGSNELKDLEALDKKQVQDATLNYRVNWHFNPPLAPHFSGEHEIMIKAAKKAIYAILNCADITDEELLSAVVGAEGLINSRPL 864
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BLAST of SMED30000650 vs. Planmine SMEST
Match: SMESG000041327.1 (SMESG000041327.1)

HSP 1 Score: 228.024 bits (580), Expect = 1.331e-75
Identity = 106/199 (53.27%), Postives = 143/199 (71.86%), Query Frame = -2 
Query:    4 KLFETVESKCHYCKRRKAKGINQLMAPIPSFRFQGTLRSFARVGFDFTGPFLTKQGRRNVRKGRYLCLFTCLESREVHLELAHRLGTDFFIRALLIFISRRGQPEYIISVNGRNVVGALKEVRELNIDNYRVQRELSKGNTGWIFNPPSPPHFGGVFEYIIKTVKRALVGIDDNAELNDEELATVMTGVEWILNSRPLT 600
            KL +     C  C+RRKAKG+ Q+MAP+P FRFQ  L++F+R+  DF GPF T QGR   R+ RY+CLFTCL++R VHLE+A+ L T+ FIRA + F+ RRG+P  I+S NG N VGA  EV+E+ +D+YR  + +S  +  WIFNPP  PHFGGVFE +IK+ K+AL  I  +A+L+DEEL ++   VE +LN+RPLT
Sbjct:   14 KLIKKCMKGCFECRRRKAKGMEQIMAPLPPFRFQEPLQTFSRIAVDFAGPFETIQGRGKTRQKRYMCLFTCLQTRAVHLEVAYALDTNAFIRAFIRFMGRRGKPLMILSDNGTNFVGATNEVQEIKVDSYRFNKFMSGNDIRWIFNPPLAPHFGGVFEALIKSAKKALQVIVGSADLSDEELNSIFIKVESLLNARPLT 212
[Close]
BLAST of SMED30000650 vs. Planmine SMEST
Match: SMESG000041215.1 (SMESG000041215.1)

HSP 1 Score: 228.409 bits (581), Expect = 4.887e-69
Identity = 108/200 (54.00%), Postives = 143/200 (71.50%), Query Frame = -2 
Query:    1 KLFETVESKCHYCKRRKAKGINQLMAPIPSFRFQGTLRSFARVGFDFTGPFLTKQGRRNVRKGRYLCLFTCLESREVHLELAHRLGTDFFIRALLIFISRRGQPEYIISVNGRNVVGALKEVRELNIDNYRVQRELSKGNTGWIFNPPSPPHFGGVFEYIIKTVKRALVGIDDNAELNDEELATVMTGVEWILNSRPLTI 600
            KL +     C  C+RRKAKG+ Q+MAP+PSFRFQ  L++FAR+  DF GP  T QGR   R+ RY+CLFTCL++R VHLE+AH L TD FIRA + F+ RR +P  I+S NG N VGA  +V+E+ +D+YR  + +S  +  WIFNPP  PHFGGVFE +I++ K+AL  I  +A+L+DEEL +V   VE +LN+RPLTI
Sbjct: 1306 KLIKKCMKGCFECRRRKAKGMEQIMAPLPSFRFQEPLQAFARIAVDFAGPLETIQGRGKTRQKRYMCLFTCLQTRAVHLEVAHALDTDAFIRAFIRFMGRREKPLMILSDNGTNFVGATNKVQEIKVDSYRFNKFMSGNDIIWIFNPPLAPHFGGVFEALIESAKKALQVIVGSADLSDEELNSVFIKVESLLNARPLTI 1505
[Close]
BLAST of SMED30000650 vs. Planmine SMEST
Match: SMESG000063595.1 (SMESG000063595.1)

HSP 1 Score: 220.705 bits (561), Expect = 2.213e-66
Identity = 105/199 (52.76%), Postives = 142/199 (71.36%), Query Frame = -2 
Query:    4 KLFETVESKCHYCKRRKAKGINQLMAPIPSFRFQGTLRSFARVGFDFTGPFLTKQGRRNVRKGRYLCLFTCLESREVHLELAHRLGTDFFIRALLIFISRRGQPEYIISVNGRNVVGALKEVRELNIDNYRVQRELSKGNTGWIFNPPSPPHFGGVFEYIIKTVKRALVGIDDNAELNDEELATVMTGVEWILNSRPLT 600
            KL +     C  C+RRKAKG+ Q+MAP+PSFRFQ +L++FAR+  DF+GPF T QGR   R+ RY+CLFTCL++R VHLE+A+ L TD FI A + F+ RR +P  I+S NG N V A  EV+E+ +D+YR  + +S  +  WIFNPP  PHF GVFE +IK+ K+AL  I  +A+L+DEEL +V   +E +LN+RPLT
Sbjct: 1813 KLIKKCIKGCFECRRRKAKGMEQIMAPLPSFRFQESLQAFARIAVDFSGPFETIQGRGKTRQKRYMCLFTCLKTRAVHLEVAYALDTDAFILAFIRFMGRRRKPLMILSDNGTNFVWATNEVQEIKVDSYRFNKFMSGNDIRWIFNPPLAPHFEGVFEALIKSSKKALQVIVGSADLSDEELNSVFIKIESLLNARPLT 2011
[Close]
BLAST of SMED30000650 vs. Planmine SMEST
Match: SMESG000035628.1 (SMESG000035628.1)

HSP 1 Score: 198.749 bits (504), Expect = 9.611e-65
Identity = 93/175 (53.14%), Postives = 126/175 (72.00%), Query Frame = -2 
Query:    4 MAPIPSFRFQGTLRSFARVGFDFTGPFLTKQGRRNVRKGRYLCLFTCLESREVHLELAHRLGTDFFIRALLIFISRRGQPEYIISVNGRNVVGALKEVRELNIDNYRVQRELSKGNTGWIFNPPSPPHFGGVFEYIIKTVKRALVGIDDNAELNDEELATVMTGVEWILNSRPLT 528
            MAP+PSFRFQ  L++FAR+  DF GPF T Q R   R+ RY+CLFTCL++R VHL++A+ L TD FIRA + F+ RRG+   I+S NG N VGA  EV+ + +D Y+V + +S+ N  WIFNPP  P FGGVFE ++K+ K+AL  I  +A+L+D+EL +V   VE +LN+RPLT
Sbjct:    1 MAPLPSFRFQEPLQAFARIAVDFAGPFQTMQVRGKARQKRYMCLFTCLQTRAVHLKVAYALDTDAFIRAFIRFMGRRGKSLMILSDNGTNFVGARNEVQRIKVDIYKVNKVMSENNIRWIFNPPLAPQFGGVFEALMKSAKKALQVIVGSADLSDDELNSVFIKVERLLNARPLT 175
[Close]
BLAST of SMED30000650 vs. Planmine SMEST
Match: SMESG000000866.1 (SMESG000000866.1)

HSP 1 Score: 198.364 bits (503), Expect = 8.220e-63
Identity = 93/198 (46.97%), Postives = 128/198 (64.65%), Query Frame = -2 
Query:    7 KLFETVESKCHYCKRRKAKGINQLMAPIPSFRFQGTLRSFARVGFDFTGPFLTKQGRRNVRKGRYLCLFTCLESREVHLELAHRLGTDFFIRALLIFISRRGQPEYIISVNGRNVVGALKEVRELNIDNYRVQRELSKGNTGWIFNPPSPPHFGGVFEYIIKTVKRALVGIDDNAELNDEELATVMTGVEWILNSRPL 600
            KL    ES C  C++RKAKG+ Q+MA +PSFR    LR F     DF  PF T+ GR   R  RY+ LF CL++R VH+ELA++L TD FI+A L F S +  P+ ++S NG N VGA   +R + ID+Y V++ELS+    W+FNPPS  HF GVFE +IK+ KR +  +  ++++NDEEL  V T  + ++NS PL
Sbjct:   96 KLIINCESSCKGCRQRKAKGMTQMMATLPSFRLSEPLRGFVHTAVDFERPFETRAGRGKARNKRYMFLFVCLKTRAVHIELAYKLDTDAFIKAFLRFTSLQEMPQLMLSDNGTNFVGAASHLRNIVIDSYMVEKELSRHECRWLFNPPSASHFEGVFEALIKSTKRVMQAVMVDSDVNDEELVNVFTKADMLINSLPL 293
The following BLAST results are available for this feature:
BLAST of SMED30000650 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000650 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000650 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000650 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000650 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000650 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000650 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000650 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2G8LCX01.747e-5851.01Integrase catalytic domain-containing protein OS=S... [more]
A0A2B4RV041.541e-5749.75Integrase catalytic domain-containing protein OS=S... [more]
A0A2G8KB921.735e-5151.41Integrase catalytic domain-containing protein OS=S... [more]
A0A2B4RBG69.728e-5145.13Nucleotide-binding oligomerization domain-containi... [more]
A0A2B4S5H12.881e-4844.56Integrase catalytic domain-containing protein OS=S... [more]
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BLAST of SMED30000650 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000650 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000650 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000650 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000650 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000650 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000041327.11.331e-7553.27SMESG000041327.1[more]
SMESG000041215.14.887e-6954.00SMESG000041215.1[more]
SMESG000063595.12.213e-6652.76SMESG000063595.1[more]
SMESG000035628.19.611e-6553.14SMESG000035628.1[more]
SMESG000000866.18.220e-6346.97SMESG000000866.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30000650 ID=SMED30000650|Name=SMED30000650|organism=Schmidtea mediterranea sexual|type=transcript|length=601bp
AATTGTTAATGGTCTTGAGTTAAGGATCCACTCTACTCCTGTCATTACTG
TAGCAAGTTCTTCATCATTTAATTCAGCATTATCATCTATACCAACTAGA
GCTCGTTTTACGGTTTTAATTATGTATTCAAATACTCCGCCAAAGTGTGG
TGGTGATGGTGGGTTAAATATCCATCCCGTATTACCTTTAGACAACTCTC
TTTGTACTCGGTAATTGTCAATATTTAATTCTCTAACCTCTTTCAGAGCT
CCGACAACATTCCTGCCGTTAACCGATATAATATACTCTGGCTGTCCTCG
TCTGCTTATAAATATTAGCAATGCCCTGATAAAGAAATCAGTACCCAATC
TATGAGCCAGTTCTAAATGCACTTCCCGACTTTCTAAGCACGTAAACAAA
CATAGATATCTCCCTTTTCTAACATTCCTTCTCCCTTGTTTTGTGAGAAA
AGGCCCAGTAAAGTCAAAGCCAACTCTCGCGAATGAACGTAAGGTTCCTT
GAAACCTAAAACTTGGAATTGGTGCCATTAGTTGGTTTATCCCTTTTGCC
TTTCTACGTTTGCAGTAATGACATTTACTCTCTACCGTTTCGAATAATTT
G
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protein sequence of SMED30000650-orf-1

>SMED30000650-orf-1 ID=SMED30000650-orf-1|Name=SMED30000650-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=200bp
KLFETVESKCHYCKRRKAKGINQLMAPIPSFRFQGTLRSFARVGFDFTGP
FLTKQGRRNVRKGRYLCLFTCLESREVHLELAHRLGTDFFIRALLIFISR
RGQPEYIISVNGRNVVGALKEVRELNIDNYRVQRELSKGNTGWIFNPPSP
PHFGGVFEYIIKTVKRALVGIDDNAELNDEELATVMTGVEWILNSRPLTI
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002089reproductive organ
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR001584Integrase_cat-core
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: biological process
TermDefinition
GO:0015074DNA integration