SMED30000612

Overview
NameSMED30000612
Smed IDSMED30000612
Length (bp)1356
Neoblast Clusters

Zeng et. al., 2018



 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30000612

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
reproductive organSMED30000612SMESG000004983.1 SMESG000004982.1 SMESG000004981.1 Contig44648newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30000612SMESG000004983.1 SMESG000004982.1 SMESG000004981.1 Contig44648uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30000612 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.009696:5163..6502 -6368
Homology
[Close]
BLAST of SMED30000612 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033])

HSP 1 Score: 63.5438 bits (153), Expect = 3.259e-10
Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = -3 
Query:  386 LSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 616
            + + L  +SQPFYT + GY+M A++  N D +G      ++  ++ G++D LL WPFK ++   L++Q      L    KP P
Sbjct:  351 MGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDP 433
[Close]
BLAST of SMED30000612 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033])

HSP 1 Score: 63.5438 bits (153), Expect = 3.391e-10
Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = -3 
Query:  386 LSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 616
            + + L  +SQPFYT + GY+M A++  N D +G      ++  ++ G++D LL WPFK ++   L++Q      L    KP P
Sbjct:  434 MGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDP 516
[Close]
BLAST of SMED30000612 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033])

HSP 1 Score: 63.5438 bits (153), Expect = 3.391e-10
Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = -3 
Query:  386 LSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 616
            + + L  +SQPFYT + GY+M A++  N D +G      ++  ++ G++D LL WPFK ++   L++Q      L    KP P
Sbjct:  434 MGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDP 516
[Close]
BLAST of SMED30000612 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033])

HSP 1 Score: 63.5438 bits (153), Expect = 3.712e-10
Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = -3 
Query:  386 LSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 616
            + + L  +SQPFYT + GY+M A++  N D +G      ++  ++ G++D LL WPFK ++   L++Q      L    KP P
Sbjct:  409 MGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDP 491
[Close]
BLAST of SMED30000612 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033])

HSP 1 Score: 63.5438 bits (153), Expect = 3.712e-10
Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = -3 
Query:  386 LSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 616
            + + L  +SQPFYT + GY+M A++  N D +G      ++  ++ G++D LL WPFK ++   L++Q      L    KP P
Sbjct:  409 MGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDP 491
[Close]
BLAST of SMED30000612 vs. Ensembl Celegans
Match: trf-2 (TNF Receptor Associated Factor (TRAF) homolog [Source:UniProtKB/TrEMBL;Acc:Q9N586])

HSP 1 Score: 59.6918 bits (143), Expect = 1.336e-9
Identity = 43/155 (27.74%), Postives = 83/155 (53.55%), Query Frame = -3 
Query:  215 PNIYIYVVDKFCEKLSEELEEWSQPFYTSHIGYRMSA-------KLGFNQDYIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKLV 658
            P I + VV     K    +  +SQPFY+   GY+M A        L F ++Y  ++V L++G++DD+L WPF+ ++ F++++  ++ E LTK +  +   P+   +  RP+   +  G +G  +F+ +          ++EF  +  I+I+IK++
Sbjct:  165 PKIGLTVVKATKNKSHRSI--YSQPFYSHGYGYKMMAVAAPYGDGLAF-REYFSVFVCLMKGEWDDILEWPFRCDVTFSILSD-DKKELLTKTIYVNEM-PEIQEFLERPEGLRN--GTFGFQNFLPLA--------KVTEFAADGDIFIQIKVL 304
[Close]
BLAST of SMED30000612 vs. Ensembl Celegans
Match: trf-1 (TNF Receptor Associated Factor (TRAF) homolog; TRF-1 [Source:UniProtKB/TrEMBL;Acc:G5EG80])

HSP 1 Score: 49.6766 bits (117), Expect = 2.963e-6
Identity = 38/157 (24.20%), Postives = 73/157 (46.50%), Query Frame = -3 
Query:  218 IYVVDKFCEKLSE-----ELEEWSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQ---VEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 646
            I+ +DK  ++ +E     +   +S PF +   GY+M A      D       I +YV L++G+FD  L WPF   I  +L++Q    E+  ++T ++ P     +E  +  RP+   +    +G   F  +          +  +V+++ IY++I +
Sbjct:  266 IWKIDKLQQRTNEAKSGADTTIFSVPFMSHRFGYKMMACACLFGDGSSAGKSISLYVLLLKGEFDPTLEWPFHRAIKISLLDQNPRPEDRVNITYVIDPRKLKANE-KFLARPRGERN--AAFGSQSFCSL--------AILQNYVKDDKIYVQIDV 411
[Close]
BLAST of SMED30000612 vs. Ensembl Fly
Match: Traf4 (gene:FBgn0026319 transcript:FBtr0077429)

HSP 1 Score: 60.4622 bits (145), Expect = 1.633e-9
Identity = 43/169 (25.44%), Postives = 82/169 (48.52%), Query Frame = -3 
Query:  218 AISKPNI-----YIYVVDKFCEKLSEE-----LEEWSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEET--ESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 670
            A+SK +I      ++ +  +  K++E      LE  S PFYTS  GY++ A +  N +      ++ +Y+K++ G++D LL WPF + I FTL  Q  ++    + +   P P     +  + RP      L G+G   FI    +      +   F++ + +++++K+
Sbjct:  321 AVSKLSINYTGTLLWKITDWSAKMAEARGKDGLELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDALLKWPFSHSITFTLFEQGAQSGQGGVAESFVPDP----TWENFQRPSNEPDQL-GFGFPRFISHELL------HSRPFIKGDTVFLRVKV 478
[Close]
BLAST of SMED30000612 vs. Ensembl Fly
Match: Traf4 (gene:FBgn0026319 transcript:FBtr0334401)

HSP 1 Score: 60.4622 bits (145), Expect = 1.650e-9
Identity = 37/137 (27.01%), Postives = 68/137 (49.64%), Query Frame = -3 
Query:  218 LEEWSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEET--ESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 604
            LE  S PFYTS  GY++ A +  N +      ++ +Y+K++ G++D LL WPF + I FTL  Q  ++    + +   P P     +  + RP      L G+G   FI    +      +   F++ + +++++K+
Sbjct:  344 LELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDALLKWPFSHSITFTLFEQGAQSGQGGVAESFVPDP----TWENFQRPSNEPDQL-GFGFPRFISHELL------HSRPFIKGDTVFLRVKV 469
[Close]
BLAST of SMED30000612 vs. Ensembl Zebrafish
Match: traf5 (Tnf receptor-associated factor 5 [Source:ZFIN;Acc:ZDB-GENE-071120-3])

HSP 1 Score: 71.2478 bits (173), Expect = 1.732e-13
Identity = 41/131 (31.30%), Postives = 66/131 (50.38%), Query Frame = -3 
Query:  218 SQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 592
            S PFYTS  GY++S +     D      ++ +Y+ ++ GDFD  L WPF+  I  TL++Q      ++    P   + D +    RP  TS      G + FI  C ++ P N   + FVR+  ++IK+K+
Sbjct:  132 SSPFYTSRSGYKLSVRAYLGGDGSGRGSHMSLYITIMRGDFDSFLPWPFRQNITLTLLDQSGTRNHMSHTFIP-DVNSDSFH---RP--TSDANVATGFTRFISHCDLENPRN---AVFVRDETLFIKVKV 253
[Close]
BLAST of SMED30000612 vs. Ensembl Zebrafish
Match: traf3 (TNF receptor-associated factor 3 [Source:ZFIN;Acc:ZDB-GENE-040801-257])

HSP 1 Score: 64.6994 bits (156), Expect = 1.010e-10
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = -3 
Query:  386 LSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 616
            +S+ L  +SQPFYT + GY+M A++  N D +G      ++  ++ G++D LL WPFK ++   L++Q    + L    KP P
Sbjct:  439 VSKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVVMRGEYDALLQWPFKQKVTLMLMDQGPARKHLGDAFKPDP 521
[Close]
BLAST of SMED30000612 vs. Ensembl Zebrafish
Match: traf4a (tnf receptor-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-040308-1])

HSP 1 Score: 56.9954 bits (136), Expect = 2.373e-8
Identity = 40/170 (23.53%), Postives = 82/170 (48.24%), Query Frame = -3 
Query:  218 AISKPNIYIYVVDKFCEKLSEE-----LEEWSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQ----VEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLG----GWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 670
            ++S   + I+ +  +  KL E       E +S PFYT   GY++      N +      ++ IY++++ G++D+LL WPF  ++ F++++Q    + + + +T+   P P     +  + +P  + + L     G+G   FI    IK         ++R+N I++K  +
Sbjct:  303 SVSHDGVLIWKLTDYSRKLQEAKLRNNHEFFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSIYIRVLPGEYDNLLEWPFSYKVTFSILDQSDPSLSKPQHITETFNPDP----NWKNFQKPCSSRNSLDESTLGFGYPKFISHEEIKK------RNYIRDNSIFLKASI 462
[Close]
BLAST of SMED30000612 vs. Ensembl Zebrafish
Match: traf4a (tnf receptor-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-040308-1])

HSP 1 Score: 56.9954 bits (136), Expect = 2.373e-8
Identity = 40/170 (23.53%), Postives = 82/170 (48.24%), Query Frame = -3 
Query:  218 AISKPNIYIYVVDKFCEKLSEE-----LEEWSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQ----VEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLG----GWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 670
            ++S   + I+ +  +  KL E       E +S PFYT   GY++      N +      ++ IY++++ G++D+LL WPF  ++ F++++Q    + + + +T+   P P     +  + +P  + + L     G+G   FI    IK         ++R+N I++K  +
Sbjct:  303 SVSHDGVLIWKLTDYSRKLQEAKLRNNHEFFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSIYIRVLPGEYDNLLEWPFSYKVTFSILDQSDPSLSKPQHITETFNPDP----NWKNFQKPCSSRNSLDESTLGFGYPKFISHEEIKK------RNYIRDNSIFLKASI 462
[Close]
BLAST of SMED30000612 vs. Ensembl Zebrafish
Match: traf4b (tnf receptor-associated factor 4b [Source:ZFIN;Acc:ZDB-GENE-040305-2])

HSP 1 Score: 54.6842 bits (130), Expect = 1.276e-7
Identity = 40/175 (22.86%), Postives = 82/175 (46.86%), Query Frame = -3 
Query:  218 SKPNIYIYVVDKFCEKLSEE-------LEEWSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVE----ETESLTKILKPHPC-------DPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISE--FVRNNIIYIKIKL 664
            S+    ++ +  F ++L E        LE +S  FY+ + GYR+      N +      ++ +Y++++ G++D LL WPF   ++F+L++Q +    + + +T+   P P         P   G  IR       + G+G   FI        S++ + +  ++R+N ++IK  +
Sbjct:  305 SRDGTLLWKLTDFSQRLQEAKTRTSGCLELFSPAFYSHNYGYRLQVSAFLNGNGSGEDTHMSVYLRVLPGEYDGLLEWPFPYRVSFSLLDQCDPALTKPQHITETFSPDPTWKNFQRPRPGALGS-IRGGCLDESMLGFGYPKFI--------SHEEMKKRNYIRDNAVFIKASI 470
[Close]
BLAST of SMED30000612 vs. Ensembl Xenopus
Match: ssh2 (slingshot protein phosphatase 2 [Source:Xenbase;Acc:XB-GENE-993093])

HSP 1 Score: 63.929 bits (154), Expect = 2.671e-10
Identity = 28/83 (33.73%), Postives = 47/83 (56.63%), Query Frame = -3 
Query:  386 LSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 616
            + + L  +SQPFYT + GY+M A++  N D +G      ++  ++ G++D LL WPFK +++  L++Q      L    KP P
Sbjct:  427 MGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVSLMLMDQGPSRRHLGDAFKPDP 509
[Close]
BLAST of SMED30000612 vs. Ensembl Xenopus
Match: ssh2 (slingshot protein phosphatase 2 [Source:Xenbase;Acc:XB-GENE-993093])

HSP 1 Score: 63.5438 bits (153), Expect = 2.971e-10
Identity = 28/83 (33.73%), Postives = 47/83 (56.63%), Query Frame = -3 
Query:  386 LSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 616
            + + L  +SQPFYT + GY+M A++  N D +G      ++  ++ G++D LL WPFK +++  L++Q      L    KP P
Sbjct:  402 MGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVSLMLMDQGPSRRHLGDAFKPDP 484
[Close]
BLAST of SMED30000612 vs. Ensembl Xenopus
Match: sytl2 (synaptotagmin like 2 [Source:Xenbase;Acc:XB-GENE-945155])

HSP 1 Score: 61.2326 bits (147), Expect = 1.509e-9
Identity = 39/170 (22.94%), Postives = 81/170 (47.65%), Query Frame = -3 
Query:  218 AISKPNIYIYVVDKFCEKLSEE-----LEEWSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQ----VEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLG----GWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 670
            ++S   + I+ +  +  K+ E       E +S PFYT   GY++      N +      Y+ +Y++++ G++D+LL WPF   + F+L++Q    + + + +T+   P P     +  + +P  + + L     G+G   FI    I+         +VR+N I+++  +
Sbjct:  303 SVSSEGVLIWKISDYSRKVQEAKVRGNFESFSPPFYTHKYGYKLQVSAFLNGNGSGEGSYLSVYIRVLPGEYDNLLEWPFSYRVTFSLLDQSDPSLSKPQHITETFNPDP----NWKNFQKPTGSRNSLDESTLGFGYPKFISHEDIRK------RNYVRDNAIFLRASV 462
[Close]
BLAST of SMED30000612 vs. Ensembl Xenopus
Match: slc12a1 (solute carrier family 12 member 1 [Source:Xenbase;Acc:XB-GENE-479925])

HSP 1 Score: 59.3066 bits (142), Expect = 7.045e-9
Identity = 25/76 (32.89%), Postives = 44/76 (57.89%), Query Frame = -3 
Query:  386 WSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 595
            +SQ FYTS  GYR+ A+   N D      ++ +Y  +++G+FD +L WPFK ++   L++Q  +   +T + +  P
Sbjct:  408 FSQHFYTSWCGYRLCARAYLNGDGSGKGSFLSLYFVVMKGEFDSILLWPFKQKVTLMLLDQSGKKNHITDVFRADP 483
[Close]
BLAST of SMED30000612 vs. Ensembl Xenopus
Match: slc12a1 (solute carrier family 12 member 1 [Source:Xenbase;Acc:XB-GENE-479925])

HSP 1 Score: 58.9214 bits (141), Expect = 8.532e-9
Identity = 25/76 (32.89%), Postives = 44/76 (57.89%), Query Frame = -3 
Query:  386 WSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 595
            +SQ FYTS  GYR+ A+   N D      ++ +Y  +++G+FD +L WPFK ++   L++Q  +   +T + +  P
Sbjct:  358 FSQHFYTSWCGYRLCARAYLNGDGSGKGSFLSLYFVVMKGEFDSILLWPFKQKVTLMLLDQSGKKNHITDVFRADP 433
[Close]
BLAST of SMED30000612 vs. Ensembl Mouse
Match: Traf3 (TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041])

HSP 1 Score: 63.929 bits (154), Expect = 2.225e-10
Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = -3 
Query:  386 LSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 616
            + + L  +SQPFYT + GY+M A++  N D +G      ++  ++ G++D LL WPFK ++   L++Q      L    KP P
Sbjct:  433 MGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDP 515
[Close]
BLAST of SMED30000612 vs. Ensembl Mouse
Match: Traf3 (TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041])

HSP 1 Score: 63.5438 bits (153), Expect = 2.659e-10
Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = -3 
Query:  386 LSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 616
            + + L  +SQPFYT + GY+M A++  N D +G      ++  ++ G++D LL WPFK ++   L++Q      L    KP P
Sbjct:  408 MGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDP 490
[Close]
BLAST of SMED30000612 vs. Ensembl Mouse
Match: Traf3 (TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041])

HSP 1 Score: 63.5438 bits (153), Expect = 2.659e-10
Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = -3 
Query:  386 LSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 616
            + + L  +SQPFYT + GY+M A++  N D +G      ++  ++ G++D LL WPFK ++   L++Q      L    KP P
Sbjct:  408 MGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDP 490
[Close]
BLAST of SMED30000612 vs. Ensembl Mouse
Match: Traf5 (TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548])

HSP 1 Score: 60.8474 bits (146), Expect = 4.809e-10
Identity = 35/132 (26.52%), Postives = 65/132 (49.24%), Query Frame = -3 
Query:  218 WSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 595
            +SQPFYTS  GYR+ A+   N D      ++ +Y  ++ G+FD LL WPF+  +   L++Q  +   + +  K    DP+   +  RP    +     G   F+    ++   N YI    +++ +++K+ +
Sbjct:  121 FSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFK---ADPNSSSF-KRPDGEMNIAS--GCPRFVSHSTLENSKNTYI----KDDTLFLKVAV 242
[Close]
BLAST of SMED30000612 vs. Ensembl Mouse
Match: Traf5 (TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548])

HSP 1 Score: 60.8474 bits (146), Expect = 4.809e-10
Identity = 35/132 (26.52%), Postives = 65/132 (49.24%), Query Frame = -3 
Query:  218 WSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 595
            +SQPFYTS  GYR+ A+   N D      ++ +Y  ++ G+FD LL WPF+  +   L++Q  +   + +  K    DP+   +  RP    +     G   F+    ++   N YI    +++ +++K+ +
Sbjct:  121 FSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFK---ADPNSSSF-KRPDGEMNIAS--GCPRFVSHSTLENSKNTYI----KDDTLFLKVAV 242
[Close]
BLAST of SMED30000612 vs. UniProt/SwissProt
Match: sp|Q60803|TRAF3_MOUSE (TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 1.557e-9
Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = -3 
Query:  386 LSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 616
            + + L  +SQPFYT + GY+M A++  N D +G      ++  ++ G++D LL WPFK ++   L++Q      L    KP P
Sbjct:  433 MGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDP 515
[Close]
BLAST of SMED30000612 vs. UniProt/SwissProt
Match: sp|Q13114|TRAF3_HUMAN (TNF receptor-associated factor 3 OS=Homo sapiens OX=9606 GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 1.628e-9
Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = -3 
Query:  386 LSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 616
            + + L  +SQPFYT + GY+M A++  N D +G      ++  ++ G++D LL WPFK ++   L++Q      L    KP P
Sbjct:  434 MGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDP 516
[Close]
BLAST of SMED30000612 vs. UniProt/SwissProt
Match: sp|P70191|TRAF5_MOUSE (TNF receptor-associated factor 5 OS=Mus musculus OX=10090 GN=Traf5 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.952e-9
Identity = 35/132 (26.52%), Postives = 65/132 (49.24%), Query Frame = -3 
Query:  218 WSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 595
            +SQPFYTS  GYR+ A+   N D      ++ +Y  ++ G+FD LL WPF+  +   L++Q  +   + +  K    DP+   +  RP    +     G   F+    ++   N YI    +++ +++K+ +
Sbjct:  429 FSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKA---DPNSSSFK-RPDGEMNI--ASGCPRFVSHSTLENSKNTYI----KDDTLFLKVAV 550
[Close]
BLAST of SMED30000612 vs. UniProt/SwissProt
Match: sp|O00463|TRAF5_HUMAN (TNF receptor-associated factor 5 OS=Homo sapiens OX=9606 GN=TRAF5 PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 1.471e-7
Identity = 35/132 (26.52%), Postives = 66/132 (50.00%), Query Frame = -3 
Query:  218 WSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 595
            +SQ FYTS  GYR+ A+   N D      ++ +Y  ++ G+FD LL WPF+  +   L++Q    +++ +  KP   DP+   +  RP    +     G   F+    ++   N YI    +++ +++K+ +
Sbjct:  429 FSQSFYTSRCGYRLCARAYLNGDGSGRGSHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQ-SGKKNIMETFKP---DPNSSSFK-RPDGEMNI--ASGCPRFVAHSVLENAKNAYI----KDDTLFLKVAV 549
[Close]
BLAST of SMED30000612 vs. UniProt/SwissProt
Match: sp|Q61382|TRAF4_MOUSE (TNF receptor-associated factor 4 OS=Mus musculus OX=10090 GN=Traf4 PE=1 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 3.010e-7
Identity = 45/184 (24.46%), Postives = 85/184 (46.20%), Query Frame = -3 
Query:  218 NKFSTLREDFK--AISKPNIYIYVVDKFCEKLSEE-----LEEWSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQ----VEETESLTKILKPHPCDPD-----EYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 703
             +   LR + +  +I    + I+ +  +  +L E      LE +S  FYT   GY++      N +      ++ IY++++ G FD+LL WPF   + F+L++Q    + + + +T+   P   DP+     + G W R     S L G+G   FI    I+         +VR++ ++I+  +
Sbjct:  290 QELQELRRELEELSIGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSIYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHP---DPNWKNFQKPGTW-RGSLDESSL-GFGYPKFISHQDIRK------RNYVRDDAVFIRASV 462
[Close]
BLAST of SMED30000612 vs. TrEMBL
Match: A0A183B927 (MATH domain-containing protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS15712 PE=4 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.175e-26
Identity = 59/161 (36.65%), Postives = 90/161 (55.90%), Query Frame = -3 
Query:  215 NIYIYVVDKFCEKLSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPK---------YTSSC-----LGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKLV 655
            N YI+ ++ +C   + E   WS+PFY    GYR  AK+ F   ++GI+++L+ G++DD L WPF+  I F LI+Q     +L++ILKP P D DE G W RP+          ++ C        WGL DF     + GP     +++VRN+ +Y+ I+LV
Sbjct:  266 NAYIWTINSYCAIEAAECGFWSEPFYLGEPGYRFRAKIEFTTFHMGIFIQLLPGEYDDSLQWPFRCSIQFVLIDQTMSGRNLSRILKPFPEDEDERGVWDRPRPDDWSSVMSESNRCTIVGKTDAWGLPDFAPRSLLGGPKPHGRNDYVRNDRMYVAIRLV 426
[Close]
BLAST of SMED30000612 vs. TrEMBL
Match: A0A504YL97 (TNF receptor-associated factor 4 OS=Fasciola gigantica OX=46835 GN=FGIG_08623 PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.594e-26
Identity = 59/166 (35.54%), Postives = 92/166 (55.42%), Query Frame = -3 
Query:  215 REDFKAIS-KPNIYIYVVDKFCEKLSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCL--------GGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKLV 685
            +  F A+S + N+YI+ +  +C   S     WS  FY    GYR  AKL F+  ++GI+++L+ G++D LL WPF++ + F +I+Q     +L++ LKP P D DE G W RP    S L          WGL DF+  C +     +  S +VRN+ +Y+ I+L+
Sbjct:  250 QASFPAVSNQCNVYIWTITSYCAVESLGCCYWSPSFYLGTPGYRFRAKLEFSSYHMGIFIQLIPGEYDALLPWPFRHIVQFMVIDQTMNGRNLSRTLKPFPEDEDERGVWDRPHNAESELKETAYDKCDAWGLPDFVPRCALNNGGQNEPSNYVRNDRLYVAIRLI 415
[Close]
BLAST of SMED30000612 vs. TrEMBL
Match: A0A5J4NF12 (MATH domain-containing protein OS=Paragonimus westermani OX=34504 GN=DEA37_0013629 PE=4 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.184e-25
Identity = 59/152 (38.82%), Postives = 86/152 (56.58%), Query Frame = -3 
Query:  215 NIYIYVVDKFCEKLSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGG-----WGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKLV 655
            N+YI+VV  F    S+    WS  FY  + GYR+ AKL F   ++GI+++L  G+FD  L WPF   + F LI+Q    ++L + LKP+P D DE G W RP   ++ L       WGL DF+    +   +    S++VRN+ IYI I+L+
Sbjct:  175 NLYIFVVPNFSAIESKSCGLWSDAFYLGNPGYRLRAKLEFTTYHMGIFIQLTPGEFDARLKWPFCEHVQFVLIDQTSSGKNLARTLKPYPDDADERGVWDRPVDNTATLDHKDRETWGLPDFVPRSMLLTEARKS-SKYVRNDQIYIAIRLI 325
[Close]
BLAST of SMED30000612 vs. TrEMBL
Match: A0A4S2LX15 (MATH domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_005726 PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.515e-23
Identity = 62/175 (35.43%), Postives = 93/175 (53.14%), Query Frame = -3 
Query:  215 NKFSTLREDFKAISKPNIYIYVVDKFCEKLSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRP---------KYTSSCLGGWGLSDFID---MCCIKGPSNDYISEFVRNNIIYIKIKLV 703
            NK +  RE  +  SK  +YI+ +  +    +E    WS  FY    GYR   KL F + ++GI+V+LV G+FD+ L WPF++ + F LI+Q     ++T+ LKP P D DE G W RP            ++ +  WG  DF+    +C   G + DY    VRN+ +YI I+L+
Sbjct:  263 NKGTAARE--QVASKCTLYIWTIPDYPVVEAEGCSYWSDSFYLGTPGYRFRTKLEFTKRFVGIFVQLVAGEFDEQLVWPFRDHMQFVLIDQSVSGRNITRTLKPFPEDEDEKGVWERPLEAREAEVQGTKTTEVSAWGFHDFVPRSMLCDCGGKTTDY----VRNDRMYIAIRLL 431
[Close]
BLAST of SMED30000612 vs. TrEMBL
Match: A0A0X3P2E9 (MATH domain-containing protein OS=Schistocephalus solidus OX=70667 GN=TR96332 PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.590e-23
Identity = 57/150 (38.00%), Postives = 83/150 (55.33%), Query Frame = -3 
Query:  218 NIYIYVVDKFCEKLSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLG--GWGLSD--FIDMCCIKGPSNDYISEFVRNNIIYIKIKL 655
            N +I+ VD F E   +   +W +PFY    GYRM AKL F+    G Y++L+ GD+D  L WPF  +I F++++Q      + ++L+P+PCD DE G W RP+    C    GWGL D     + C K       S ++RN  +YI+I L
Sbjct:  250 NWFIWRVDNFAEVEEKCCGDWCEPFYLGQPGYRMQAKLEFSTYMFGAYIRLICGDYDACLQWPFDRDIYFSILDQTGCANHIVRVLRPYPCDSDEKGIWDRPR-AGECEKQIGWGLPDLGLRSLFCTK---MGKPSAYLRNGTLYIQISL 395
[Close]
BLAST of SMED30000612 vs. Ensembl Cavefish
Match: traf5 (TNF receptor-associated factor 5 [Source:NCBI gene;Acc:103031120])

HSP 1 Score: 69.707 bits (169), Expect = 2.174e-12
Identity = 39/131 (29.77%), Postives = 67/131 (51.15%), Query Frame = -3 
Query:  218 SQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 592
            S PFYTSH GY++SA++    +      ++ +YV L+ GDFD LL WPF+  +   +++Q      ++    P     +    + RP  TS      G   FI    ++ P N   + +VR++ ++IK+K+
Sbjct:  421 SPPFYTSHSGYKLSARVYLGGEGTARGTHLSLYVMLMRGDFDSLLPWPFRQNVTLAVLDQSGNRNHVSLSFTPDLASNN----FRRP--TSETNAALGFPRFITHADLEAPRN---AAYVRDDTLFIKVKV 542
[Close]
BLAST of SMED30000612 vs. Ensembl Cavefish
Match: ENSAMXT00000035169.1 (pep primary_assembly:Astyanax_mexicanus-2.0:9:3354744:3362219:1 gene:ENSAMXG00000029095.1 transcript:ENSAMXT00000035169.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 63.5438 bits (153), Expect = 1.192e-11
Identity = 29/82 (35.37%), Postives = 47/82 (57.32%), Query Frame = -3 
Query:  386 SEELEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 613
            S+ L  +SQPFYT + GY+M A++  N D +G      ++  ++ G++D LL WPFK ++   L++Q    + L    KP P
Sbjct:   23 SKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVVMRGEYDALLPWPFKQKVTLMLMDQGPARKHLGDAFKPDP 104
[Close]
BLAST of SMED30000612 vs. Ensembl Cavefish
Match: traf4a (TNF receptor associated factor 4 [Source:NCBI gene;Acc:103024022])

HSP 1 Score: 60.8474 bits (146), Expect = 1.169e-9
Identity = 41/172 (23.84%), Postives = 86/172 (50.00%), Query Frame = -3 
Query:  218 AISKPNIYIYVVDKFCEKLSEE-----LEEWSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQ----VEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLG----GWGLSDFIDMCCIKGPSNDYISE--FVRNNIIYIKIKL 670
            ++S   + I+ ++ +  KL E       E +S PFYT   GY++      N +      ++ IY++++ G++D+LL WPF  ++ F++++Q    + + + +T+   P P     +  + +P  + + L     G+G   FI        S+D I +  ++R+N I++K  +
Sbjct:  303 SVSHDGVLIWKLNDYSRKLQEAKLHNNHEFFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSIYIRVLPGEYDNLLEWPFAYKVTFSILDQSDPSLSKPQHITETFNPDP----NWKNFQKPSSSRNSLDESTLGFGYPKFI--------SHDEIRKRNYIRDNAIFLKASI 462
[Close]
BLAST of SMED30000612 vs. Ensembl Cavefish
Match: traf4b (TNF receptor-associated factor 4-like [Source:NCBI gene;Acc:103043275])

HSP 1 Score: 55.4546 bits (132), Expect = 6.006e-8
Identity = 40/175 (22.86%), Postives = 79/175 (45.14%), Query Frame = -3 
Query:  218 SKPNIYIYVVDKFCEKLSE-------ELEEWSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQ----VEETESLTKILKPHP-------CDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISE--FVRNNIIYIKIKL 664
            S+  + ++ +  +C +L E         E +S  FY+   GYR+      N +      Y+ IY++++ G++D LL WPF   + F+L++Q    + + + + +   P P         P   G  IR       + G+G   FI        S++ + +  ++R+N I+I+  +
Sbjct:  305 SQDGVLLWKIPDYCRRLQEARTRTTGSAELFSPAFYSHRHGYRLQVSAFLNGNGSGEGSYLSIYIRVLPGEYDGLLEWPFPYRVTFSLLDQSDPALSKPQHIVESFSPDPNWKNFQRPQPGAMGS-IRAGSLDESMLGFGYPKFI--------SHEQMRKRNYIRDNAIFIQASI 470
[Close]
BLAST of SMED30000612 vs. Ensembl Cavefish
Match: traf1 (TNF receptor-associated factor 1-like [Source:NCBI gene;Acc:103045252])

HSP 1 Score: 54.299 bits (129), Expect = 1.497e-7
Identity = 41/172 (23.84%), Postives = 82/172 (47.67%), Query Frame = -3 
Query:  227 KFSTLREDFKA---ISKPNIYIYVVDKFCEKLSEEL-----EEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIK 700
            + S+L++   A   +S    +++ +    +KL E        ++S  FYTS  G+++  +L    D +G      ++  +++GD+D LL+WPFK ++ F LI+Q  + E +    +P          + RP    +   G  L  F  +  ++ P + Y    V+++ ++IK
Sbjct:  374 QISSLQQSISAQQDVSYDGTFLWRICDVSQKLKEAATGQKSSQYSPAFYTSRYGFKVCMRLYMYGDGVGKGTHISLFFVIMKGDYDPLLSWPFKQKVTFFLIDQ-NQREHVVDAFRPDL----RSASFQRPVSEMNVASGCPL--FFPLSKLRSPKHAY----VKDDTLFIK 534
[Close]
BLAST of SMED30000612 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000074.1 (pep scaffold:Pmarinus_7.0:GL482142:165593:173010:-1 gene:ENSPMAG00000000066.1 transcript:ENSPMAT00000000074.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 68.1662 bits (165), Expect = 1.326e-12
Identity = 39/133 (29.32%), Postives = 65/133 (48.87%), Query Frame = -3 
Query:  224 LEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKI 604
            L  +SQPFYTS  GYRM A+   N D +G      ++  ++ G++D LL WPF+  +  TL++Q      L+   KP P        + RP    +   G  L  F+    ++  S      +++++ I+IK+
Sbjct:  347 LSLYSQPFYTSPFGYRMCARAYLNGDGVGRGTHLSLFFVVMRGEYDALLPWPFRQRVTLTLLDQGAARRQLSDTFKPDPASSS----FRRPTSDMNIASGCPL--FVSHVALESAS------YLQDDTIFIKV 467
[Close]
BLAST of SMED30000612 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002130.1 (pep scaffold:Pmarinus_7.0:GL484662:8457:12718:-1 gene:ENSPMAG00000001936.1 transcript:ENSPMAT00000002130.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 64.6994 bits (156), Expect = 1.276e-11
Identity = 35/133 (26.32%), Postives = 65/133 (48.87%), Query Frame = -3 
Query:  224 LEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKI 604
            L  +SQPFYTS  GY+M A+   N D +G      ++  ++ G++D LL WPF+  +  +L++Q      L+    P P      G + RP    +   G  L  F+    ++G      S ++ ++ +++++
Sbjct:  290 LSLYSQPFYTSPFGYKMCARAYLNGDGVGRGTHLSLFFVVMRGEYDALLEWPFRRRVTLSLLDQGAARRHLSDTFTPDPAS----GSFRRPDGDMNVASGCPL--FVSHVALEG------SSYLVDDTVFVRV 410
[Close]
BLAST of SMED30000612 vs. Ensembl Nematostella
Match: EDO35237 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SM27])

HSP 1 Score: 70.0922 bits (170), Expect = 6.478e-13
Identity = 36/108 (33.33%), Postives = 61/108 (56.48%), Query Frame = -3 
Query:  383 KAISKPNIYIYVVDKFCEKLSEELEE-----WSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPC 673
            +AIS    +++ +DKF E+ +E         +S PFYT   GY++ A+L  N D      Y+ I++ L+ G++D +L WPF+  I  TLI+Q +   ++++   P PC
Sbjct:  374 QAISYDGTFLWKIDKFTERYAEAKSGNATSIYSSPFYTHRFGYKLCARLFPNGDGSARDNYLSIFIALMRGEYDSILPWPFQETITITLIDQ-DNGMNISETFDPDPC 480
[Close]
BLAST of SMED30000612 vs. Ensembl Nematostella
Match: EDO49545 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RGK7])

HSP 1 Score: 67.0106 bits (162), Expect = 4.679e-12
Identity = 43/136 (31.62%), Postives = 72/136 (52.94%), Query Frame = -3 
Query:  227 EELEEWSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYI--SEFVRNNIIYIK 610
            EEL  +S PFYTS  GY++  K   N        ++ +Y+ +++GD+D LL WPFK +I F LI+Q E+    T +L P+   P+    + RP    +   G G   F+         N+ +   E+V++++++IK
Sbjct:  274 EELAIFSPPFYTSQYGYKLRLKAYLNGRDRGKGTHLSLYIIIMKGDYDALLEWPFKQKITFYLIDQSEKQNHRTHLLSPNRSLPNIKVVFNRPTVKENL--GIGNPCFV--------PNEVLESGEYVKDDVMFIK 399
[Close]
BLAST of SMED30000612 vs. Ensembl Nematostella
Match: EDO29145 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T4G8])

HSP 1 Score: 60.8474 bits (146), Expect = 9.260e-12
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = -3 
Query:  422 EELEEWSQPFYTSHIGYRMSAKLGFNQ------DYIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEE 610
            EEL  +S PFYTS  GY++  K   N        ++ +Y+ +++GD+D LL WPFK +I F LI+Q E+
Sbjct:   23 EELAIFSPPFYTSQYGYKLRLKAYLNGRDRGKGTHLSLYIIIMKGDYDALLEWPFKQKITFYLIDQSEK 91
[Close]
BLAST of SMED30000612 vs. Ensembl Nematostella
Match: EDO40665 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S6K0])

HSP 1 Score: 62.3882 bits (150), Expect = 1.125e-10
Identity = 40/131 (30.53%), Postives = 66/131 (50.38%), Query Frame = -3 
Query:  218 SQPFYTSHIGYRMSAKL---GFNQD---YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 592
            S PFYT   GY++ A+    G  Q    ++ +YV +++GD+D +L WPF+  + F LI+Q ++  S         CD +   Y+ RP    S   G+G   F+    +K         FVR+N ++I I++
Sbjct:  256 SPPFYTGQYGYKLRAEAFLNGLGQGKGTHLSLYVVIMKGDYDSVLPWPFQQRVDFILIDQDDDFTSRQNKTWRLTCDRNS-DYFGRPNKAKSL--GFGCPKFVSQETLKS------RNFVRDNTVFIMIEV 377
[Close]
BLAST of SMED30000612 vs. Ensembl Nematostella
Match: EDO48394 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RJK8])

HSP 1 Score: 62.7734 bits (151), Expect = 1.330e-10
Identity = 41/128 (32.03%), Postives = 70/128 (54.69%), Query Frame = -3 
Query:  227 SQPFYTSHIGYRMSAKL---GFNQD---YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIK 592
            S PFYTS  GY+M  K    G+      ++ + +++++G++D +L WPF+ +I  +LINQ E+  S T  + P    PD+   + RP    +   G G S FI    ++  S DYI    ++++I+I+
Sbjct:  365 SLPFYTSRYGYKMRLKAYPNGYGDGKGTHLSLSIRIMKGEYDAILEWPFRRKITLSLINQSEQWRSETVEIYPDDATPDKKHKFERPIENENV--GCGYSCFISH--MELNSGDYI----KDDVIFIE 484
[Close]
BLAST of SMED30000612 vs. Ensembl Medaka
Match: ENSORLT00000001369.2 (TNF receptor-associated factor 5 [Source:NCBI gene;Acc:101170323])

HSP 1 Score: 65.855 bits (159), Expect = 3.516e-11
Identity = 36/131 (27.48%), Postives = 68/131 (51.91%), Query Frame = -3 
Query:  218 SQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 592
            S PF+T   GY+M+ K   N D      ++ +YV L+ GDFD LL WPFK  ++ ++++Q       +   +P P +      + +P   S+     G   FI +  ++ P N   + +V+++ +++K+K+
Sbjct:  454 SVPFHTGRCGYKMAMKAYLNGDGEGRGTHLSLYVVLMPGDFDALLPWPFKQTVSLSVLDQSGARNHQSFNFRPDPTNT----CFHQPAAESASNVAVGFPCFISLDALEAPGN---AVYVKDDTLFVKVKV 577
[Close]
BLAST of SMED30000612 vs. Ensembl Medaka
Match: traf3 (TNF receptor associated factor 3 [Source:NCBI gene;Acc:101161601])

HSP 1 Score: 63.1586 bits (152), Expect = 1.986e-10
Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = -3 
Query:  386 LEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 604
            L  +SQPFYT + GY+M A++  N D +G      ++  ++ G++D LL WPFK ++   L++Q    + L    KP P
Sbjct:  320 LSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVVMRGEYDALLPWPFKQKVTLMLMDQGPSRKHLGDAFKPDP 398
[Close]
BLAST of SMED30000612 vs. Ensembl Medaka
Match: traf4a (TNF receptor associated factor 4 [Source:NCBI gene;Acc:101161428])

HSP 1 Score: 60.4622 bits (145), Expect = 1.853e-9
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3 
Query:  218 AISKPNIYIYVVDKFCEKLSEE-----LEEWSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQ----VEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLG----GWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 670
            ++S   + I+ ++ +  KL E       E +S PFYT   GY++      N +      ++ +Y++++ G++D+LL WPF  ++ F++++Q    + + + +T+   P P     +  + +P  T + L     G+G   FI    IK         ++R+N I+IK  +
Sbjct:  303 SVSHDGVLIWKLNDYSRKLQEAKLRSNHEFFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSYKVTFSILDQSDPSLSKPQHITETFNPDP----NWKNFQKPCSTRNSLDESTLGFGYPKFISHEEIKK------RNYIRDNCIFIKASI 462
[Close]
BLAST of SMED30000612 vs. Ensembl Medaka
Match: traf4a (TNF receptor associated factor 4 [Source:NCBI gene;Acc:101161428])

HSP 1 Score: 60.077 bits (144), Expect = 1.998e-9
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3 
Query:  218 AISKPNIYIYVVDKFCEKLSEE-----LEEWSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQ----VEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLG----GWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 670
            ++S   + I+ ++ +  KL E       E +S PFYT   GY++      N +      ++ +Y++++ G++D+LL WPF  ++ F++++Q    + + + +T+   P P     +  + +P  T + L     G+G   FI    IK         ++R+N I+IK  +
Sbjct:  296 SVSHDGVLIWKLNDYSRKLQEAKLRSNHEFFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSYKVTFSILDQSDPSLSKPQHITETFNPDP----NWKNFQKPCSTRNSLDESTLGFGYPKFISHEEIKK------RNYIRDNCIFIKASI 455
[Close]
BLAST of SMED30000612 vs. Ensembl Medaka
Match: traf4a (TNF receptor associated factor 4 [Source:NCBI gene;Acc:101161428])

HSP 1 Score: 60.077 bits (144), Expect = 2.025e-9
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3 
Query:  218 AISKPNIYIYVVDKFCEKLSEE-----LEEWSQPFYTSHIGYRMSAKLGFNQD------YIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQ----VEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLG----GWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 670
            ++S   + I+ ++ +  KL E       E +S PFYT   GY++      N +      ++ +Y++++ G++D+LL WPF  ++ F++++Q    + + + +T+   P P     +  + +P  T + L     G+G   FI    IK         ++R+N I+IK  +
Sbjct:  303 SVSHDGVLIWKLNDYSRKLQEAKLRSNHEFFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSYKVTFSILDQSDPSLSKPQHITETFNPDP----NWKNFQKPCSTRNSLDESTLGFGYPKFISHEEIKK------RNYIRDNCIFIKASI 462
[Close]
BLAST of SMED30000612 vs. Planmine SMEST
Match: SMESG000004982.1 (SMESG000004982.1)

HSP 1 Score: 538.11 bits (1385), Expect = 0.000e+0
Identity = 310/343 (90.38%), Postives = 314/343 (91.55%), Query Frame = -3 
Query:  182 MNKYENYPVLYKELCVKTEELFGFXXXXXXXXXXXIGLMKGITNPRRTFTGSSELTSAITNLACELKKSVASQRSIESNLNEVMLSIRTCHKGIQCSKEIPTLCDEDNNDNRTIPHITNISSSPSPNRMTPTKDITEILSIPEYDXXXXXXXXXXXXXXXXXXXXXXTPNKFSTLREDFKAISKPNIYIYVVDKFCEKLSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKLVE*FYKIFEIFS 1210
            MNKYENYPVLYKELCVKTEELFGFIEEQKKIQLEIIGLMKGITNPRRTFTGSSELTSAITNLACELKKSVASQRSIESNLNEVMLSIRTCHKGIQCSKEIPTLCDEDNNDNRTIPHITNISSSPSPNRMTPTKDITEILSIPEYDKCITKSSSKSLKSKICRKKSCSTPNKFSTLREDFKAISKPNIYIYVVDKFCEKLSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIGIYVKLVE               AFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEF++       IK  +  +KI   FS
Sbjct:    1 MNKYENYPVLYKELCVKTEELFGFIEEQKKIQLEIIGLMKGITNPRRTFTGSSELTSAITNLACELKKSVASQRSIESNLNEVMLSIRTCHKGIQCSKEIPTLCDEDNNDNRTIPHITNISSSPSPNRMTPTKDITEILSIPEYDKCITKSSSKSLKSKICRKKSCSTPNKFSTLREDFKAISKPNIYIYVVDKFCEKLSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIGIYVKLVE---------------AFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFIKRKST---IKAGKNHHKISSFFS 325
[Close]
BLAST of SMED30000612 vs. Planmine SMEST
Match: SMESG000028762.1 (SMESG000028762.1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.876e-17
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = -3 
Query:  212 SKPNIYIYVVDKFCEKLSEELEEW--SQPFYTSHIGYRMSAKLGFNQDYIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLT-----KILKPHPCDPDEYGYWIRPKYTSSCLGGWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKLVE 664
            S  N YI+ +      +  + +E   ++ F  S  GY+M+A+   +  Y+GIYV LV G +D LL WPF+N I  +L+NQ +   + T     K +K  PC       W +P   +    G GL     +   K   N Y SEF+RN+ IY+K +L++
Sbjct:   20 SDNNFYIWTISGVKTLIYNDFKEILNTKVFKLSPYGYKMAAQAKLDSGYLGIYVILVPGKYDKLLNWPFENPIQISLLNQSKPNANHTVTIDPKTMKDEPC-------WHKP-ILNVHQKGCGLKTAFPLSIFKKNQNGYPSEFLRNDQIYLKFELLK 169
[Close]
BLAST of SMED30000612 vs. Planmine SMEST
Match: SMESG000039089.1 (SMESG000039089.1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.145e-12
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = -3 
Query:  386 DFKAISKPNIYIYVVDKFCE-----KLSEELEEWSQPFYTSHIGYRMSAKLGFNQDYIG------IYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHP 679
            D K   +  ++I+ V+ F E     +    +   S+PFYT   GY+MS K+    D +G      ++  L++GDFDDLL WPFKN++  T+++Q  +T   +   KP P
Sbjct:  312 DEKINYRNGVFIWKVEHFPELKANAERGNRISVTSEPFYTKEFGYKMSMKIYPAGDGVGKSTHLSVFFTLMKGDFDDLLVWPFKNKVTLTILDQKNKTSDYSDTFKPDP 420
[Close]
BLAST of SMED30000612 vs. Planmine SMEST
Match: SMESG000020135.1 (SMESG000020135.1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.545e-11
Identity = 48/163 (29.45%), Postives = 79/163 (48.47%), Query Frame = -3 
Query:  218 YIYVVDKFCEKL-----SEELEEWSQPFYTSHIGYRMSAKL------GFNQDYIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLG--------GWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 649
            +++ VDKF +K+      + L  +S  FYT   GY+M  +L       +  +Y+ +++ L++ D DD+L WPF+N   F+LINQ        +   PH      Y  +   K    CL         G+G  DF+D+   K   N+   ++ RN+ I+IK K+
Sbjct:  283 FVWKVDKFNDKMKAAKKGKTLSIFSDSFYTHQYGYKMCLQLFPNGNAEYANNYLSVFLCLMKSDLDDILEWPFRNHFTFSLINQ--------RTRLPHSRSTTTYDNFQMEK----CLDKPILERNVGYGYLDFMDL---KELFNN--DDWTRNDQIFIKFKV 428
[Close]
BLAST of SMED30000612 vs. Planmine SMEST
Match: SMESG000020135.1 (SMESG000020135.1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.144e-11
Identity = 48/163 (29.45%), Postives = 79/163 (48.47%), Query Frame = -3 
Query:  218 YIYVVDKFCEKL-----SEELEEWSQPFYTSHIGYRMSAKL------GFNQDYIGIYVKLVEGDFDDLLAWPFKNEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLG--------GWGLSDFIDMCCIKGPSNDYISEFVRNNIIYIKIKL 649
            +++ VDKF +K+      + L  +S  FYT   GY+M  +L       +  +Y+ +++ L++ D DD+L WPF+N   F+LINQ        +   PH      Y  +   K    CL         G+G  DF+D+   K   N+   ++ RN+ I+IK K+
Sbjct:  295 FVWKVDKFNDKMKAAKKGKTLSIFSDSFYTHQYGYKMCLQLFPNGNAEYANNYLSVFLCLMKSDLDDILEWPFRNHFTFSLINQ--------RTRLPHSRSTTTYDNFQMEK----CLDKPILERNVGYGYLDFMDL---KELFNN--DDWTRNDQIFIKFKV 440
The following BLAST results are available for this feature:
BLAST of SMED30000612 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
TRAF33.259e-1033.73TNF receptor associated factor 3 [Source:HGNC Symb... [more]
TRAF33.391e-1033.73TNF receptor associated factor 3 [Source:HGNC Symb... [more]
TRAF33.391e-1033.73TNF receptor associated factor 3 [Source:HGNC Symb... [more]
TRAF33.712e-1033.73TNF receptor associated factor 3 [Source:HGNC Symb... [more]
TRAF33.712e-1033.73TNF receptor associated factor 3 [Source:HGNC Symb... [more]
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BLAST of SMED30000612 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
trf-21.336e-927.74TNF Receptor Associated Factor (TRAF) homolog [So... [more]
trf-12.963e-624.20TNF Receptor Associated Factor (TRAF) homolog; TRF... [more]
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BLAST of SMED30000612 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Traf41.633e-925.44gene:FBgn0026319 transcript:FBtr0077429[more]
Traf41.650e-927.01gene:FBgn0026319 transcript:FBtr0334401[more]
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BLAST of SMED30000612 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
traf51.732e-1331.30Tnf receptor-associated factor 5 [Source:ZFIN;Acc:... [more]
traf31.010e-1034.94TNF receptor-associated factor 3 [Source:ZFIN;Acc:... [more]
traf4a2.373e-823.53tnf receptor-associated factor 4a [Source:ZFIN;Acc... [more]
traf4a2.373e-823.53tnf receptor-associated factor 4a [Source:ZFIN;Acc... [more]
traf4b1.276e-722.86tnf receptor-associated factor 4b [Source:ZFIN;Acc... [more]
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BLAST of SMED30000612 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ssh22.671e-1033.73slingshot protein phosphatase 2 [Source:Xenbase;Ac... [more]
ssh22.971e-1033.73slingshot protein phosphatase 2 [Source:Xenbase;Ac... [more]
sytl21.509e-922.94synaptotagmin like 2 [Source:Xenbase;Acc:XB-GENE-9... [more]
slc12a17.045e-932.89solute carrier family 12 member 1 [Source:Xenbase;... [more]
slc12a18.532e-932.89solute carrier family 12 member 1 [Source:Xenbase;... [more]
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BLAST of SMED30000612 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Traf32.225e-1033.73TNF receptor-associated factor 3 [Source:MGI Symbo... [more]
Traf32.659e-1033.73TNF receptor-associated factor 3 [Source:MGI Symbo... [more]
Traf32.659e-1033.73TNF receptor-associated factor 3 [Source:MGI Symbo... [more]
Traf54.809e-1026.52TNF receptor-associated factor 5 [Source:MGI Symbo... [more]
Traf54.809e-1026.52TNF receptor-associated factor 5 [Source:MGI Symbo... [more]
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BLAST of SMED30000612 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q60803|TRAF3_MOUSE1.557e-933.73TNF receptor-associated factor 3 OS=Mus musculus O... [more]
sp|Q13114|TRAF3_HUMAN1.628e-933.73TNF receptor-associated factor 3 OS=Homo sapiens O... [more]
sp|P70191|TRAF5_MOUSE4.952e-926.52TNF receptor-associated factor 5 OS=Mus musculus O... [more]
sp|O00463|TRAF5_HUMAN1.471e-726.52TNF receptor-associated factor 5 OS=Homo sapiens O... [more]
sp|Q61382|TRAF4_MOUSE3.010e-724.46TNF receptor-associated factor 4 OS=Mus musculus O... [more]
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BLAST of SMED30000612 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A183B9271.175e-2636.65MATH domain-containing protein OS=Echinostoma capr... [more]
A0A504YL976.594e-2635.54TNF receptor-associated factor 4 OS=Fasciola gigan... [more]
A0A5J4NF124.184e-2538.82MATH domain-containing protein OS=Paragonimus west... [more]
A0A4S2LX151.515e-2335.43MATH domain-containing protein OS=Opisthorchis fel... [more]
A0A0X3P2E91.590e-2338.00MATH domain-containing protein OS=Schistocephalus ... [more]
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BLAST of SMED30000612 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
traf52.174e-1229.77TNF receptor-associated factor 5 [Source:NCBI gene... [more]
ENSAMXT00000035169.11.192e-1135.37pep primary_assembly:Astyanax_mexicanus-2.0:9:3354... [more]
traf4a1.169e-923.84TNF receptor associated factor 4 [Source:NCBI gene... [more]
traf4b6.006e-822.86TNF receptor-associated factor 4-like [Source:NCBI... [more]
traf11.497e-723.84TNF receptor-associated factor 1-like [Source:NCBI... [more]
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BLAST of SMED30000612 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ENSPMAT00000000074.11.326e-1229.32pep scaffold:Pmarinus_7.0:GL482142:165593:173010:-... [more]
ENSPMAT00000002130.11.276e-1126.32pep scaffold:Pmarinus_7.0:GL484662:8457:12718:-1 g... [more]
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BLAST of SMED30000612 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000612 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO352376.478e-1333.33Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO495454.679e-1231.62Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO291459.260e-1242.03Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO406651.125e-1030.53Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO483941.330e-1032.03Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30000612 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSORLT00000001369.23.516e-1127.48TNF receptor-associated factor 5 [Source:NCBI gene... [more]
traf31.986e-1035.44TNF receptor associated factor 3 [Source:NCBI gene... [more]
traf4a1.853e-924.12TNF receptor associated factor 4 [Source:NCBI gene... [more]
traf4a1.998e-924.12TNF receptor associated factor 4 [Source:NCBI gene... [more]
traf4a2.025e-924.12TNF receptor associated factor 4 [Source:NCBI gene... [more]
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BLAST of SMED30000612 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000004982.10.000e+090.38SMESG000004982.1[more]
SMESG000028762.14.876e-1732.91SMESG000028762.1[more]
SMESG000039089.11.145e-1233.94SMESG000039089.1[more]
SMESG000020135.12.545e-1129.45SMESG000020135.1[more]
SMESG000020135.13.144e-1129.45SMESG000020135.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30000612 ID=SMED30000612|Name=SMED30000612|organism=Schmidtea mediterranea sexual|type=transcript|length=1356bp
AGCAGGTCGAGTGGTCGAGTCCACTGTACGCTTTGTATAATTAAAACTGA
AATACTGAAAACATATAATTTCGAGTTTGACCATTTATAGCTTTATTTAA
ATAATTATCATAATTGAAGGAATTCTTTAGACTACAATTTCAGAATTTTG
TAGAAAATAATGATCAAATATTATAATTATTTGAAAAAATTTCAAATATC
TTGTAAAATTATTCGACCAACTTAATTTTGATATAAATAATATTATTTCT
CACAAATTCTGAAATATAATCATTGCTTGGACCCTTGATGCAGCACATAT
CGATAAAGTCGCTCAAACCCCAGCCACCGAGACATGATGATGTATACTTA
GGTCGTATCCAATATCCATATTCATCTGGATCACAAGGATGGGGTTTCAG
AATCTTGGTTAAACTTTCTGTTTCTTCAACTTGATTAATCAGAGTAAAGG
CTATTTCATTTTTAAATGGCCAAGCTAATAAGTCATCAAAATCACCTTCG
ACAAGCTTTACATAGATTCCAATATAATCCTGATTAAAGCCTAATTTTGC
TGACATCCTGTACCCAATGTGACTTGTGTAAAATGGTTGAGACCATTCTT
CTAATTCTTCAGACAGCTTTTCGCAAAACTTATCAACCACATAAATATAA
ATATTTGGCTTGGAAATCGCTTTAAAATCCTCTCTTAACGTCGAAAATTT
ATTTGGTGTGCTGCATGACTTTTTTCTACATATTTTTGATTTTAAAGATT
TAGAAGAGGATTTTGTTATACATTTATCATATTCAGGAATGCTTAAGATT
TCGGTTATATCCTTTGTTGGAGTCATTCGGTTTGGAGAAGGACTTGATGA
AATGTTGGTTATATGTGGAATTGTTCTATTGTCATTATTGTCTTCATCAC
ATAAAGTCGGTATCTCTTTAGAGCACTGAATTCCCTTATGACAGGTTCTA
ATAGAAAGCATCACTTCGTTGAGATTGGACTCTATAGATCTTTGAGATGC
TACAGATTTCTTTAACTCGCACGCCAAATTCGTTATAGCACTTGTTAATT
CGCTGCTACCAGTGAAAGTGCGCCGAGGATTAGTTATACCCTTCATTAAA
CCTATTATTTCTAATTGTATTTTCTTCTGTTCTTCAATAAATCCAAATAA
TTCTTCAGTTTTTACGCAAAGTTCTTTGTATAATACGGGATAATTTTCAT
ATTTATTCATAACTTTTAAGAAGTATACAATGCATTTTATCAATAAATAA
TTATTAAAAATAATCTAAAGAATATCTAAAGTGTAGTTAGCAACATTTAA
TTTTTGACTGTTGTTTGAAGAAATCAATCAGTGAGCTCATTATTGAGGAC
ATAAAT
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protein sequence of SMED30000612-orf-1

>SMED30000612-orf-1 ID=SMED30000612-orf-1|Name=SMED30000612-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=334bp
MNKYENYPVLYKELCVKTEELFGFIEEQKKIQLEIIGLMKGITNPRRTFT
GSSELTSAITNLACELKKSVASQRSIESNLNEVMLSIRTCHKGIQCSKEI
PTLCDEDNNDNRTIPHITNISSSPSPNRMTPTKDITEILSIPEYDKCITK
SSSKSLKSKICRKKSCSTPNKFSTLREDFKAISKPNIYIYVVDKFCEKLS
EELEEWSQPFYTSHIGYRMSAKLGFNQDYIGIYVKLVEGDFDDLLAWPFK
NEIAFTLINQVEETESLTKILKPHPCDPDEYGYWIRPKYTSSCLGGWGLS
DFIDMCCIKGPSNDYISEFVRNNIIYIKIKLVE*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002089reproductive organ
Vocabulary: INTERPRO
TermDefinition
IPR008974TRAF-like
IPR002083MATH/TRAF_dom
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding