G_PROTEIN_RECEP_F1_2 domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30000602 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Xenopus
Match: rho (rhodopsin [Source:NCBI gene;Acc:100037900]) HSP 1 Score: 49.6766 bits (117), Expect = 8.046e-6 Identity = 56/228 (24.56%), Postives = 102/228 (44.74%), Query Frame = 2 Query: 572 IGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNEN---LPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPI-IITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIG----IIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231 +G +MA WS+ +LA+ RY +VC+ +NF EN + +FT++M + A P +F + I C D+ +++ V MFI P+ +I C +L + A ++Q +AT+ Q++++ +V+ + I F++ P ++ +AFY F + G +P + N IY+ NK FR + + C K+ Sbjct: 119 LGGEMAL-WSLVVLAIERYVVVCKP--------MANFRFGENHAIMGVVFTWIM--ALSCAAPPLFGWSRYIPEGMQCSCG-VDYYTLKPEVNNESFVVYMFIVHFTIPLCVIFFCYGRLLCTV---KEAAAQQQESATT---QKAEKEVTRMVVMMVIFFLICWVP--YAYVAFYIFTHQGSDFGPVFMTVPAFFAKSSAIYNPVIYIVLNKQFRNCLITTLCCGKN 326
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Mouse
Match: Rho (rhodopsin [Source:MGI Symbol;Acc:MGI:97914]) HSP 1 Score: 50.0618 bits (118), Expect = 4.200e-6 Identity = 53/219 (24.20%), Postives = 97/219 (44.29%), Query Frame = 2 Query: 596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNEN---LPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIGII----PNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231 WS+ +LA+ RY +VC+ SNF EN + +FT++M + A P + + I C D+ +++ + MF+ P+I+ L+ + + A ++Q +AT+ Q++++ +V+ + I F++ P ++ +AFY F + + G I P S N IY+ NK FR L + C K+ Sbjct: 126 WSLVVLAIERYVVVCKP--------MSNFRFGENHAIMGVVFTWIM--ALACAAPPLVGWSRYIPEGMQCSCG-IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTV--KEAAAQQQESATT---QKAEKEVTRMVIIMVIFFLICWLP--YASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMLNKQFRNCMLTTLCCGKN 326
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Match: sp|Q28886|OPSD_MACFA (Rhodopsin OS=Macaca fascicularis OX=9541 GN=RHO PE=2 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 4.870e-6 Identity = 55/219 (25.11%), Postives = 97/219 (44.29%), Query Frame = 2 Query: 596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNEN---LPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIG----IIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231 WS+ +LA+ RY +VC+ SNF EN + FT++M + A P +F + I C D+ +++ + MF+ P+I+ L+ ++ A ++Q +AT+ Q++++ +V+ + I F++ P ++ +AFY F + + G IP S N IY+ NK FR L I C K+ Sbjct: 126 WSLVVLAIERYVVVCKP--------MSNFRFGENHAIMGVAFTWVM--ALACAAPPLFGWSRYIPEGLQCSCG-IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEARA--QQQESATT---QKAEKEVTRMVIIMVIAFLICWVP--YASVAFYIFTHQGSNFGPIFMTIPAFFAKSASIYNPVIYIMMNKQFRNCMLTTICCGKN 326
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Match: sp|P28681|OPSD_CRIGR (Rhodopsin OS=Cricetulus griseus OX=10029 GN=RHO PE=3 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 6.024e-6 Identity = 52/219 (23.74%), Postives = 98/219 (44.75%), Query Frame = 2 Query: 596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNEN---LPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIGII----PNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231 WS+ +LA+ RY ++C+ SNF EN + +FT++M + A P + + I C D+ +++ + MF+ P+I+ L+ + + A ++Q +AT+ Q++++ +V+ + + F++ FP ++ +AFY F + + G I P S N IY+ NK FR L + C K+ Sbjct: 126 WSLVVLAIERYVVICKP--------MSNFRFGENHAIMGVVFTWIM--ALACAAPPLVGWSRYIPEGMQCSCG-VDYYTLKPEVNNESFVIYMFVVHFTIPLIVIFFCYGQLVFTV--KEAAAQQQESATT---QKAEKEVTRMVILMVVFFLICWFP--YAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKN 326
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Match: sp|P31355|OPSD_LITPI (Rhodopsin OS=Lithobates pipiens OX=8404 GN=RHO PE=1 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 7.152e-6 Identity = 53/217 (24.42%), Postives = 95/217 (43.78%), Query Frame = 2 Query: 596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKI-FTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIGII----PNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231 WS+ +LA+ RY +VC+ SNF EN + F I + A+P +F + I C D+ +++ + MF+ P+II S L+ + + A ++Q +AT+ Q++++ +V+ + I F++ P ++ +AFY F + G I P + N IY+ NK FR + + C K+ Sbjct: 126 WSLVVLAIERYIVVCKP--------MSNFRFGENHAMMGVAFTWIMALACAVPPLFGWSRYIPEGMQCSCG-VDYYTLKPEVNNESFVIYMFVVHFLIPLIIISFCYGRLVCTV--KEAAAQQQESATT---QKAEKEVTRMVIIMVIFFLICWVP--YAYVAFYIFTHQGSEFGPIFMTVPAFFAKSSAIYNPVIYIMLNKQFRNCMITTLCCGKN 326
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Match: sp|P49912|OPSD_RABIT (Rhodopsin OS=Oryctolagus cuniculus OX=9986 GN=RHO PE=2 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 7.929e-6 Identity = 55/219 (25.11%), Postives = 96/219 (43.84%), Query Frame = 2 Query: 596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNEN---LPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIG----IIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231 WS+ +LA+ RY +VC+ SNF EN + FT++M + A P + + I C D+ +++ + MF+ P+II L+ + + A ++Q +AT+ Q++++ +V+ + I F++ P ++ +AFY F + + G IP S N IY+ NK FR L I C K+ Sbjct: 126 WSLVVLAIERYVVVCKP--------MSNFRFGENHAIMGVAFTWIM--ALACAAPPLVGWSRYIPEGMQCSCG-IDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGQLVFTV--KEAAAQQQESATT---QKAEKEVTRMVIIMVIAFLICWVP--YASVAFYIFTHQGSNFGPIFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTICCGKN 326
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Match: sp|P51470|OPSD_LITCT (Rhodopsin OS=Lithobates catesbeianus OX=8400 GN=RHO PE=2 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 8.023e-6 Identity = 53/217 (24.42%), Postives = 95/217 (43.78%), Query Frame = 2 Query: 596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKI-FTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIGII----PNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231 WS+ +LA+ RY +VC+ SNF EN + F I + A+P +F + I C D+ +++ + MF+ P+II S L+ + + A ++Q +AT+ Q++++ +V+ + I F++ P ++ +AFY F + G I P + N IY+ NK FR + + C K+ Sbjct: 126 WSLVVLAIERYIVVCKP--------MSNFRFGENHAMMGVAFTWIMALACAVPPLFGWSRYIPEGMQCSCG-VDYYTLKPEVNNESFVIYMFVVHFLIPLIIISFCYGRLVCTV--KEAAAQQQESATT---QKAEKEVTRMVVIMVIFFLICWVP--YAYVAFYIFTHQGSEFGPIFMTVPAFFAKSSAIYNPVIYIMLNKQFRNCMITTLCCGKN 326
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A3P6SAQ6 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Dibothriocephalus latus OX=60516 GN=DILT_LOCUS2461 PE=4 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 1.462e-37 Identity = 113/338 (33.43%), Postives = 176/338 (52.07%), Query Frame = 2 Query: 308 YTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAISYXXXXXXXXXXXXXXCQLTEPLKPFQYFGLKALATV---------EILLL----ICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTN----------------ATSNR------FQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNN----NIHIGIIPNLLIYLDSCLNLFIYLASNKTFRKTS 1204 YTYIT VL N++ N F++ I + W S ++ ILK +S FE F L ++ + G + LA+V I L+ I + FQ+ARNWSV +LA +RYD VCRS + R++ FS ++ I + ++ +ALPR+FE C + A I + L+ +V+Q ++G++ FI QSGGP+I +S ++R+I R R+R + A +NR +R Q + L++A+C TF +LE P+FFSK+ NN ++++ +I NLLIYLDS N+F+Y+ASN TFR+ + Sbjct: 50 YTYITLVLSPLNVVLNGFSLRIFTHRAWKNSTMSCILKTLSIFETCFGLCLLLHTLSHSLLENYVSGSDGNEWLASVFTISTQRRIGIFLMAFHPILSGALFAFQIARNWSVVLLAAYRYDSVCRS--IGRVSA----FSRVSICVIMSLVLAAAFLIALPRVFETRAFFCYSNAQIYNEEYLLAASRVYQMVFIGIITFIVQSGGPVICVCVLSFFVVRQISLRRKYRRRNQSALYHHVSAALKDPSDAANANRSTPARPVERCQPSGDKLILALCFTFFILETPAFFSKILNAYLRNNFPLHDVYLSVIANLLIYLDSTFNVFVYMASNPTFRQVT 381
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A0R3SGW5 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS4169 PE=4 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 9.739e-36 Identity = 112/364 (30.77%), Postives = 167/364 (45.88%), Query Frame = 2 Query: 236 DYGLVTFIRNCSSCLEKK------NGMPITYTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAISY----------------XXXXXXXXXXXXXXCQLTEPLKPFQYFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGT------------------LVMAVCITFMVLEFPSFFSK-LAFYAFDNN---NIHIGIIPNLLIYLDSCLNLFIYLASNKTFR 1195 DY L R S C E + N + Y + V+ N+L N ++ I +W S + ILK++S + LTE + K +A + + I + FQ++RNWSV +LA +RYD +CR +L S+F E +P I T M+ ALPR+FE+ ICI T +I L+ ++Q YLG+ FI QSGGP++ +S +IRKI R RK+ +++ N G+ L++A+C F +LE P+FFSK L+ Y N +++I +I N LIYLDS N+F+Y+ SN TFR Sbjct: 8 DYLLYVLTR--SGCEESQLEVDEYNEIFQIYKILVLVIAPINVLLNGISLKIFGHRLWKNSSTSAILKSLSVFEICFGSSLFLHTINSKVLETYTRLDNYTTANLTEKER---MVNAKLVAGMTVSQQILSGFLFAFQISRNWSVVLLAAYRYDAICR-----KLGTVSSF-PRERIPWIMTTTMVLSGLFALPRLFEIKSFICIPTVMIYQEEPLLAGNLMYQLLYLGIGTFIVQSGGPVLCVCILSFFVIRKIALRRKFRKQNQRTVFIAANKNEDNSGSAQQTATKVVERKLPSGDKLMLALCFMFFILETPAFFSKILSSYTSTNYPTLDVYISVIANFLIYLDSTANVFVYMGSNPTFR 360
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A0R3TYW4 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS13037 PE=4 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 5.682e-35 Identity = 87/247 (35.22%), Postives = 133/247 (53.85%), Query Frame = 2 Query: 521 KALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKR------------------QTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSK-LAFYAFDNN---NIHIGIIPNLLIYLDSCLNLFIYLASNKTFR 1195 K +A++ + I + FQ+ARNWSV +LA +RYD +CR +L S+F E +P I T M+ ALPR+FE+ IC+ T +I + L+ ++Q YLG+ FI QSGGP++ +S +IRKI R R++ + + +R + L++A+C F VLE P+FFSK L+ Y N ++++ +I N LIYLDS +N+F+Y+ SN TFR Sbjct: 120 KLVASMTVSHQILSGFLFAFQVARNWSVVLLAAYRYDAICR-----KLGTVSSF-PRERIPWIMTATMVLSGLFALPRLFEIKSFICVPTVIIYNEEPLLAKNLMYQLLYLGIGTFIVQSGGPVLCVCILSFFVIRKIALRRKFRRQNKRTVFILSSGNEDNSCVEPQTATKTVERKLPSGDKLMLALCFMFFVLETPAFFSKILSSYTSTNYPTLDVYMSVIANFLIYLDSTVNVFVYMGSNPTFR 360
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: W6UQV1 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Echinococcus granulosus OX=6210 GN=EGR_01208 PE=4 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 6.718e-35 Identity = 103/334 (30.84%), Postives = 163/334 (48.80%), Query Frame = 2 Query: 308 YTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAIS------------YXXXXXXXXXXXXXXCQLTEPLKPFQ-YFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKI------------------QNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSK-LAFYAFDNN---NIHIGIIPNLLIYLDSCLNLFIYLASNKTFRKTS 1204 Y + L N+L N ++ I +W + L+ ILK++S + L ++N QL + L +Q ++ +A + ++ + FQ++RNWSV +LA +RYD +CR +L S+F E +P I +I ALPRMFE+ IC TA+I L+ +Q YLG+ FI QSGGP++ +S +IRKI + A + +R+Q + L++A+C TF +LE P+FFSK L+ Y + ++++ +I NLLIYLDS N F+Y+ SN TFR+ + Sbjct: 41 YNILVLALAPLNVLLNGLSLRIFEHRLWKNNSLSAILKSLSVFEICFGCSLFFHTITSKTLDLYVNKEGQLADNLTDYQSQHHVRLVAALIVIHQGLSGFLFAFQLSRNWSVVLLAAYRYDAICR-----KLGTVSSF-PRERIPLIMIITLISAGLFALPRMFEIKSYICAPTAIIYQEEPLLARSIFYQLIYLGIGTFIVQSGGPVLCVCVLSSFVIRKIAIRRRFRRQNQRTVLVTSSKDDPGSGVEPLAATKTVERNQPSGDKLMLALCFTFFILETPAFFSKILSSYTSKYHPTVDVYMSVIANLLIYLDSTFNAFVYMGSNPTFRQVA 368
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A068WHK8 (Rhodopsin orphan GPCR OS=Echinococcus granulosus OX=6210 GN=EgrG_000490100 PE=4 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 7.891e-35 Identity = 103/334 (30.84%), Postives = 163/334 (48.80%), Query Frame = 2 Query: 308 YTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAIS------------YXXXXXXXXXXXXXXCQLTEPLKPFQ-YFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKI------------------QNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSK-LAFYAFDNN---NIHIGIIPNLLIYLDSCLNLFIYLASNKTFRKTS 1204 Y + L N+L N ++ I +W + L+ ILK++S + L ++N QL + L +Q ++ +A + ++ + FQ++RNWSV +LA +RYD +CR +L S+F E +P I +I ALPRMFE+ IC TA+I L+ +Q YLG+ FI QSGGP++ +S +IRKI + A + +R+Q + L++A+C TF +LE P+FFSK L+ Y + ++++ +I NLLIYLDS N F+Y+ SN TFR+ + Sbjct: 41 YNILVLALAPLNVLLNGLSLRIFEHRLWKNNSLSAILKSLSVFEICFGCSLFFHTITSKTLDLYVNKEGQLADNLTDYQSQHHVRLVAALIVIHQGLSGFLFAFQLSRNWSVVLLAAYRYDAICR-----KLGTVSSF-PRERIPLIMIITLISAGLFALPRMFEIKSYICAPTAIIYQEEPLLARSIFYQLIYLGIGTFIVQSGGPVLCVCVLSSFVIRKIAIRRRFRRQNQRTVLVTSSKDDPGSGVEPLAATKTVERNQPSGDKLMLALCFTFFILETPAFFSKILSSYTSKYHPTVDVYMSVIANLLIYLDSTFNAFVYMGSNPTFRQVA 368
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Cavefish
Match: RHO (rhodopsin [Source:NCBI gene;Acc:103027557]) HSP 1 Score: 49.2914 bits (116), Expect = 6.291e-6 Identity = 52/217 (23.96%), Postives = 92/217 (42.40%), Query Frame = 2 Query: 596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPI-IITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIG----IIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231 WS+ +LA+ RY +VC+ T R + FT++M + A+P + + I C D+ + + + MFI P+ II C S +L R A ++Q + ++ QR+++ +V+ + I F+V P ++ +A+Y F N G +P + N IY+ N+ FR L + C K+ Sbjct: 126 WSLVVLAIERYVVVCKPMTTFRFGEKHAIVGVG-----FTWVM--ALTCAVPPLLGWSRYIPEGMQCSCG-IDYYTPKPEINNTSFVIYMFILHFSIPLFIIFFCYSRLLCTV---RAAAAQQQESEST---QRAEKEVTRMVVVMVIAFLVCWVP--YATVAWYIFANQGTEFGPVFMTVPAFFAKSAALYNPVIYILLNRQFRNCMLTTVCCGKN 326
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Medaka
Match: rho (KFH-Rh protein [Source:NCBI gene;Acc:100049259]) HSP 1 Score: 50.447 bits (119), Expect = 3.032e-6 Identity = 59/236 (25.00%), Postives = 99/236 (41.95%), Query Frame = 2 Query: 596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNEN---LPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITS-CVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIG----IIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS-FESWEIQTTMTVRVN 1276 WS+ +LA+ R+ +VC+ SNF EN + +FT++M A+P + + I C D+ + + F V MF+ P+I+ C +L + A ++ +T QR++R +V+ + I F+V P ++ +A+Y F N G IP S N IY+ NK FR + + C K+ FE E +T + Sbjct: 126 WSLVVLAIERWVVVCKPI--------SNFRFGENHAIMGLVFTWIM--AASCAVPPLVGWSRYIPEGMQCSCG-VDYYTRAEGFNNESFVVYMFVCHFLIPLIVVFFCYGRLLCAVKEAAAAQQESETT------QRAEREVTRMVVIMVIGFLVCWLP--YASVAWYIFTNQGSEFGPLFMTIPAFFAKSSSIYNPAIYICMNKQFRNCMITTLCCGKNPFEEEEGASTTASKTE 342
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Medaka
Match: RHO (rhodopsin [Source:HGNC Symbol;Acc:HGNC:10012]) HSP 1 Score: 49.6766 bits (117), Expect = 4.252e-6 Identity = 52/217 (23.96%), Postives = 91/217 (41.94%), Query Frame = 2 Query: 596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPI-IITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIG----IIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231 WS+ +LA+ RY +VC+ T R F ++ F + + A P +F + I C D+ + + + MF+ P+ II C S +L R A +Q + T+ QR++R +V+ + I+F+V P ++ +A+Y F N G +P + N IY+ N+ FR + + C K+ Sbjct: 126 WSLVVLAIERYVVVCKPMTNFR-------FEEKHAIAGLAFSWVMALTCAAPPLFGWSRYIPEGMQCSCG-IDYYTPKPEINNTSFVIYMFVLHFSIPLFIIFFCYSRLLCTV---RAAAALQQESETT---QRAEREVTRMVIVMVISFLVCWVP--YATVAWYIFANQGTEFGPVFMTVPAFFAKSAALYNPVIYILLNRQFRNCMITTVCCGKN 326
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000076138.1 (SMESG000076138.1) HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0 Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 2 Query: 227 LVVDYGLVTFIRNCSSCLEKKNGMPITYTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAISYXXXXXXXXXXXXXXCQLTEPLKPFQYFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIGIIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKSFESWEIQTTMTVRVNNSEKNDKNEEF 1309 LVVDYGLVTFIRNCSSCLEKKNGMPITYTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAISYFEILFNLLNFINNICQLTEPLKPFQYFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIGIIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKSFESWEIQTTMTVRVNNSEKNDKNEEF Sbjct: 11 LVVDYGLVTFIRNCSSCLEKKNGMPITYTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAISYFEILFNLLNFINNICQLTEPLKPFQYFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIGIIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKSFESWEIQTTMTVRVNNSEKNDKNEEF 371
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000069446.1 (SMESG000069446.1) HSP 1 Score: 195.667 bits (496), Expect = 5.021e-57 Identity = 123/343 (35.86%), Postives = 197/343 (57.43%), Query Frame = 2 Query: 242 GLVTFIRNCSSCLEKKNGMPIT--YTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAISYXXXXXXXXXXXXXXCQLTEPLKPFQYFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRS--KTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQ-------------------TNATSNRFQRS--QRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIGIIPNLLIYLDSCLNLFIYLASNKTFR 1195 G+V F NC SC + N Y ++++ L + N+ ++F++ ILS ++WNK ++ +L++IS FE +FN F+ + Q + L P +G++ + VE++LL D ++ FQMARNWS+ L+ +RY MVCR+ +T R+L +N F+ +N+ + ++I C ++ PR+ E P+ICI+T IC Y + F+Y Y+GV++F+FQ+ GP+ + S M+IRKI + IR++ N + R RS ++N +LV+ + + F +LE P FFSKL + F+ +N H I N+LI DS LNL IYL SN TFR Sbjct: 8 GIVYFTNNCLSCSKGYNSSSFMKMYIWVSYTLSMINVFSHLFSLYILSHALWNKVTMSRLLRSISLFEAIFNFFMFLQILSQNYDFLIPSHKYGMRFVGFVELILLTVDVFVVTFQMARNWSLVFLSFYRYQMVCRATCETGRQLT--TNLFTLKNITFVDMIILIVCCAVSTPRILEELPEICIHTGAICSYLPNYAFNPWFKYCYIGVILFLFQNFGPVTLVVIFSSMVIRKIHLQSLIRQKSFGHSLTNNNGPREKILGTNLNNSKRRCSRSNLRQNSCSLVLLLSLCFAILEIPGFFSKLLWIVFNIHNEHFSICANILISFDSTLNLVIYLVSNSTFR 348
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000063294.1 (SMESG000063294.1) HSP 1 Score: 159.073 bits (401), Expect = 1.864e-43 Identity = 115/369 (31.17%), Postives = 191/369 (51.76%), Query Frame = 2 Query: 245 LVTFIRNCSSCLEKKNGMPITYTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAIS-YXXXXXXXXXXXXXXCQLTEPLKPFQYFGLKALATVEILLLI-----CDSLMIGFQMARNWSVTILALFRYDMVCRS----KTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFD-----NNNIHIGIIPNLLIYLDSCLNLFIYLASNKTFRKTS---LNRIRCAKSFESWE--IQTTMTVRVNNSEKN 1291 L+ + C+ + Y YIT +L +IL N FA ++ +S+W KSV++ IL+ +S + + + +I E P + VE+++ I LMI F +ARNW+V ILA +RY+ VCR K +R ++N NL F F+ I +ALPRM E +IC T + + FL K + Y + G+++F+ Q+GGP+I+ +S +++ I+ IRK N + Q + L++ + F VLE P+FFSK+ + F+ N +IHIG++ N LIYLDS +N+ +Y+ SN TFR +S L+++ C S + + + + +T +N + +N Sbjct: 13 LIKLVTKCNFSSQNSIETDTIYKYITLILTPLSILSNTFAFVVFKESIWKKSVMSKILRMLSLFEILFNVNVLLEASIRHKIEEQHP---------SMVELVIFIYVITAAKVLMIVFLIARNWTVVILAGYRYEAVCRPVGSCKYIR--------YNNINLA--FCFIFALSILIALPRMMETKIEICQPTLSVNRFVPFLISYKWYLYLHTGILLFLIQNGGPVILVCFLSSCVLKVIRKMKKIRKSNFNLADKK-GSPQPSGDRLIVILSAAFFVLETPAFFSKILHHYFEYQGYYNLDIHIGLLANTLIYLDSIINVAVYVISNPTFRISSKALLSKLICKVSSQRGQDPMSSYVTYTINQTNRN 361
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000004763.1 (SMESG000004763.1) HSP 1 Score: 125.176 bits (313), Expect = 3.749e-31 Identity = 113/367 (30.79%), Postives = 184/367 (50.14%), Query Frame = 2 Query: 230 VVDYGLVTFIRNCSSCLEKKNGMPITYTYITFVLVVTNILGNMFAVIILSDSVWNKSVL-TTILKAISYXXXXXXXXXXXXXXCQLTEPLKPFQYFGLKALATVEIL--LLICDSLM-IGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYG--YLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNI--------HIGIIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKSFESWEIQTTMTVRVNNSEK 1288 ++D +VT S + Y I+ L+ N N FA+ I S +W+ +L IL S+ E++F + + L E +K +Y I+ L C L +GF +ARN + +LA R++ +C +R + ++ N+ F ++ F I +A PRMFE T C+ T + + ++ LS V+QY YL V +F+ Q G P++ + +S++++RKI R ++ R+T+A N+ ++S LV+A+CITF E PSFFSKL F N++I H+ I N+ IY+DS +NL IYL SN+ FR L +I +K + TT + + E+ Sbjct: 22 LIDDQVVTNCSTNSGNFSASANIEKIYQIISITLLSINSFANCFALHIFSKFLWHMPILMNQILARFSFIELIFQMTLLLFY---LVEYIKIDEYIISSRFVNPGIMDALFRCIYLFSVGFLIARNSWIILLAFHRFECICYPLRTKR------YVTSANINFYFFGIVSFAILIAFPRMFEQTYTYCLQTGDVVNVSEALS--NVYQYRIIYLNVFVFLIQIGIPLLSVNILSILMLRKI--RQSLTFRRTSAAPNQKKKS-FAADKLVVALCITFFTFEMPSFFSKL----FHNSHIISNDKIIYHLTFIANISIYIDSSMNLLIYLVSNRIFRGAVLQQI--SKVSHKKTVSTTKYLTIAKKEE 368
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000022454.1 (SMESG000022454.1) HSP 1 Score: 115.931 bits (289), Expect = 3.241e-28 Identity = 101/326 (30.98%), Postives = 150/326 (46.01%), Query Frame = 2 Query: 257 IRNCSSCLEKKNGMPITYTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAIS-----YXXXXXXXXXXXXXXCQLTEPLKPFQYFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGL--ALPRMFEVTPQICINTA-VICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIG-----IIPNLLIYLDSCLNLFIYLASNKTFR 1195 I N S + N + Y Y + VL + L N A+ I + +W KS+ + ILK +S + + ++ N Q P + ++L E L I F + RN +V +LA RY+ VC +R N N F E L+IF + L ALPR+FE C I FL + Y + GVV+FIFQSGGP+I +S +++ I+ R R SN R Q ++ +C+ F +LE PSFFSK+ + N+ I ++ N+ IY+DS +N FIY+ SN TF+ Sbjct: 12 ITNASGHVSYSNLLFTYYNYSSIVLSSISFLLNTLAIFIFNHRLWRKSLTSIILKYLSVFESLFNATVLIKNSYDNYAIQSKSP----NFSSYESLLIDETFRLFIRLFGIVFLICRNVTVAVLAAHRYECVCLPVGAKRRINSRNVFQIE--------LVIFLLALVIALPRLFEKYVVACAEPLWKIEGKVAFLDSSNWYVYLHKGVVLFIFQSGGPVITVFILSFYILQVIKKMKKFRNRN----SNNKVRPQPLGDKIIFPLCLIFFILESPSFFSKILEAYLRSKNLVIVDHTLLVVANICIYVDSIINFFIYIISNPTFK 321 The following BLAST results are available for this feature:
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30000602 ID=SMED30000602|Name=G_PROTEIN_RECEP_F1_2 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1634bpback to top protein sequence of SMED30000602-orf-1 >SMED30000602-orf-1 ID=SMED30000602-orf-1|Name=SMED30000602-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=372bp MNSSNANSSNLVVDYGLVTFIRNCSSCLEKKNGMPITYTYITFVLVVTNIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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