G_PROTEIN_RECEP_F1_2 domain-containing protein

Overview
NameG_PROTEIN_RECEP_F1_2 domain-containing protein
Smed IDSMED30000602
Length (bp)1634
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30000602) t-SNE clustered cells

Violin plots show distribution of expression levels for G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30000602) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30000602) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30000602) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30000602

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30000602h1SMcG0013933 dd_Smed_v4_28209_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30000602h1SMcG0013933 dd_Smed_v4_28209_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30000602h1SMcG0013933 dd_Smed_v4_28209_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30000602h1SMcG0013933 dd_Smed_v6_28209_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Xenopus
Match: rho (rhodopsin [Source:NCBI gene;Acc:100037900])

HSP 1 Score: 49.6766 bits (117), Expect = 8.046e-6
Identity = 56/228 (24.56%), Postives = 102/228 (44.74%), Query Frame = 2
Query:  572 IGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNEN---LPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPI-IITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIG----IIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231
            +G +MA  WS+ +LA+ RY +VC+          +NF   EN   +  +FT++M   +  A P +F  +  I       C   D+ +++         V MFI     P+ +I  C   +L      + A  ++Q +AT+   Q++++    +V+ + I F++   P  ++ +AFY F +     G     +P       +  N  IY+  NK FR   +  + C K+
Sbjct:  119 LGGEMAL-WSLVVLAIERYVVVCKP--------MANFRFGENHAIMGVVFTWIM--ALSCAAPPLFGWSRYIPEGMQCSCG-VDYYTLKPEVNNESFVVYMFIVHFTIPLCVIFFCYGRLLCTV---KEAAAQQQESATT---QKAEKEVTRMVVMMVIFFLICWVP--YAYVAFYIFTHQGSDFGPVFMTVPAFFAKSSAIYNPVIYIVLNKQFRNCLITTLCCGKN 326          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Mouse
Match: Rho (rhodopsin [Source:MGI Symbol;Acc:MGI:97914])

HSP 1 Score: 50.0618 bits (118), Expect = 4.200e-6
Identity = 53/219 (24.20%), Postives = 97/219 (44.29%), Query Frame = 2
Query:  596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNEN---LPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIGII----PNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231
            WS+ +LA+ RY +VC+          SNF   EN   +  +FT++M   +  A P +   +  I       C   D+ +++         + MF+     P+I+       L+  +  + A  ++Q +AT+   Q++++    +V+ + I F++   P  ++ +AFY F +   + G I    P       S  N  IY+  NK FR   L  + C K+
Sbjct:  126 WSLVVLAIERYVVVCKP--------MSNFRFGENHAIMGVVFTWIM--ALACAAPPLVGWSRYIPEGMQCSCG-IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTV--KEAAAQQQESATT---QKAEKEVTRMVIIMVIFFLICWLP--YASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMLNKQFRNCMLTTLCCGKN 326          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Match: sp|Q28886|OPSD_MACFA (Rhodopsin OS=Macaca fascicularis OX=9541 GN=RHO PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 4.870e-6
Identity = 55/219 (25.11%), Postives = 97/219 (44.29%), Query Frame = 2
Query:  596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNEN---LPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIG----IIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231
            WS+ +LA+ RY +VC+          SNF   EN   +   FT++M   +  A P +F  +  I       C   D+ +++         + MF+     P+I+       L+  ++   A  ++Q +AT+   Q++++    +V+ + I F++   P  ++ +AFY F +   + G     IP       S  N  IY+  NK FR   L  I C K+
Sbjct:  126 WSLVVLAIERYVVVCKP--------MSNFRFGENHAIMGVAFTWVM--ALACAAPPLFGWSRYIPEGLQCSCG-IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEARA--QQQESATT---QKAEKEVTRMVIIMVIAFLICWVP--YASVAFYIFTHQGSNFGPIFMTIPAFFAKSASIYNPVIYIMMNKQFRNCMLTTICCGKN 326          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Match: sp|P28681|OPSD_CRIGR (Rhodopsin OS=Cricetulus griseus OX=10029 GN=RHO PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 6.024e-6
Identity = 52/219 (23.74%), Postives = 98/219 (44.75%), Query Frame = 2
Query:  596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNEN---LPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIGII----PNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231
            WS+ +LA+ RY ++C+          SNF   EN   +  +FT++M   +  A P +   +  I       C   D+ +++         + MF+     P+I+       L+  +  + A  ++Q +AT+   Q++++    +V+ + + F++  FP  ++ +AFY F +   + G I    P       S  N  IY+  NK FR   L  + C K+
Sbjct:  126 WSLVVLAIERYVVICKP--------MSNFRFGENHAIMGVVFTWIM--ALACAAPPLVGWSRYIPEGMQCSCG-VDYYTLKPEVNNESFVIYMFVVHFTIPLIVIFFCYGQLVFTV--KEAAAQQQESATT---QKAEKEVTRMVILMVVFFLICWFP--YAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKN 326          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Match: sp|P31355|OPSD_LITPI (Rhodopsin OS=Lithobates pipiens OX=8404 GN=RHO PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 7.152e-6
Identity = 53/217 (24.42%), Postives = 95/217 (43.78%), Query Frame = 2
Query:  596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKI-FTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIGII----PNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231
            WS+ +LA+ RY +VC+          SNF   EN   +   F  I  +  A+P +F  +  I       C   D+ +++         + MF+     P+II S     L+  +  + A  ++Q +AT+   Q++++    +V+ + I F++   P  ++ +AFY F +     G I    P       +  N  IY+  NK FR   +  + C K+
Sbjct:  126 WSLVVLAIERYIVVCKP--------MSNFRFGENHAMMGVAFTWIMALACAVPPLFGWSRYIPEGMQCSCG-VDYYTLKPEVNNESFVIYMFVVHFLIPLIIISFCYGRLVCTV--KEAAAQQQESATT---QKAEKEVTRMVIIMVIFFLICWVP--YAYVAFYIFTHQGSEFGPIFMTVPAFFAKSSAIYNPVIYIMLNKQFRNCMITTLCCGKN 326          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Match: sp|P49912|OPSD_RABIT (Rhodopsin OS=Oryctolagus cuniculus OX=9986 GN=RHO PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 7.929e-6
Identity = 55/219 (25.11%), Postives = 96/219 (43.84%), Query Frame = 2
Query:  596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNEN---LPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIG----IIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231
            WS+ +LA+ RY +VC+          SNF   EN   +   FT++M   +  A P +   +  I       C   D+ +++         + MF+     P+II       L+  +  + A  ++Q +AT+   Q++++    +V+ + I F++   P  ++ +AFY F +   + G     IP       S  N  IY+  NK FR   L  I C K+
Sbjct:  126 WSLVVLAIERYVVVCKP--------MSNFRFGENHAIMGVAFTWIM--ALACAAPPLVGWSRYIPEGMQCSCG-IDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGQLVFTV--KEAAAQQQESATT---QKAEKEVTRMVIIMVIAFLICWVP--YASVAFYIFTHQGSNFGPIFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTICCGKN 326          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Match: sp|P51470|OPSD_LITCT (Rhodopsin OS=Lithobates catesbeianus OX=8400 GN=RHO PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 8.023e-6
Identity = 53/217 (24.42%), Postives = 95/217 (43.78%), Query Frame = 2
Query:  596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKI-FTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIGII----PNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231
            WS+ +LA+ RY +VC+          SNF   EN   +   F  I  +  A+P +F  +  I       C   D+ +++         + MF+     P+II S     L+  +  + A  ++Q +AT+   Q++++    +V+ + I F++   P  ++ +AFY F +     G I    P       +  N  IY+  NK FR   +  + C K+
Sbjct:  126 WSLVVLAIERYIVVCKP--------MSNFRFGENHAMMGVAFTWIMALACAVPPLFGWSRYIPEGMQCSCG-VDYYTLKPEVNNESFVIYMFVVHFLIPLIIISFCYGRLVCTV--KEAAAQQQESATT---QKAEKEVTRMVVIMVIFFLICWVP--YAYVAFYIFTHQGSEFGPIFMTVPAFFAKSSAIYNPVIYIMLNKQFRNCMITTLCCGKN 326          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A3P6SAQ6 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Dibothriocephalus latus OX=60516 GN=DILT_LOCUS2461 PE=4 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.462e-37
Identity = 113/338 (33.43%), Postives = 176/338 (52.07%), Query Frame = 2
Query:  308 YTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAISYXXXXXXXXXXXXXXCQLTEPLKPFQYFGLKALATV---------EILLL----ICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTN----------------ATSNR------FQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNN----NIHIGIIPNLLIYLDSCLNLFIYLASNKTFRKTS 1204
            YTYIT VL   N++ N F++ I +   W  S ++ ILK +S FE  F L   ++ +             G + LA+V          I L+    I    +  FQ+ARNWSV +LA +RYD VCRS  + R++     FS  ++  I + ++     +ALPR+FE     C + A I +    L+  +V+Q  ++G++ FI QSGGP+I    +S  ++R+I  R   R+R  +                A +NR       +R Q +   L++A+C TF +LE P+FFSK+      NN    ++++ +I NLLIYLDS  N+F+Y+ASN TFR+ +
Sbjct:   50 YTYITLVLSPLNVVLNGFSLRIFTHRAWKNSTMSCILKTLSIFETCFGLCLLLHTLSHSLLENYVSGSDGNEWLASVFTISTQRRIGIFLMAFHPILSGALFAFQIARNWSVVLLAAYRYDSVCRS--IGRVSA----FSRVSICVIMSLVLAAAFLIALPRVFETRAFFCYSNAQIYNEEYLLAASRVYQMVFIGIITFIVQSGGPVICVCVLSFFVVRQISLRRKYRRRNQSALYHHVSAALKDPSDAANANRSTPARPVERCQPSGDKLILALCFTFFILETPAFFSKILNAYLRNNFPLHDVYLSVIANLLIYLDSTFNVFVYMASNPTFRQVT 381          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A0R3SGW5 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS4169 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 9.739e-36
Identity = 112/364 (30.77%), Postives = 167/364 (45.88%), Query Frame = 2
Query:  236 DYGLVTFIRNCSSCLEKK------NGMPITYTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAISY----------------XXXXXXXXXXXXXXCQLTEPLKPFQYFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGT------------------LVMAVCITFMVLEFPSFFSK-LAFYAFDNN---NIHIGIIPNLLIYLDSCLNLFIYLASNKTFR 1195
            DY L    R  S C E +      N +   Y  +  V+   N+L N  ++ I    +W  S  + ILK++S                   +             LTE  +       K +A + +   I    +  FQ++RNWSV +LA +RYD +CR     +L   S+F   E +P I T  M+     ALPR+FE+   ICI T +I      L+   ++Q  YLG+  FI QSGGP++    +S  +IRKI  R   RK+          +++ N G+                  L++A+C  F +LE P+FFSK L+ Y   N    +++I +I N LIYLDS  N+F+Y+ SN TFR
Sbjct:    8 DYLLYVLTR--SGCEESQLEVDEYNEIFQIYKILVLVIAPINVLLNGISLKIFGHRLWKNSSTSAILKSLSVFEICFGSSLFLHTINSKVLETYTRLDNYTTANLTEKER---MVNAKLVAGMTVSQQILSGFLFAFQISRNWSVVLLAAYRYDAICR-----KLGTVSSF-PRERIPWIMTTTMVLSGLFALPRLFEIKSFICIPTVMIYQEEPLLAGNLMYQLLYLGIGTFIVQSGGPVLCVCILSFFVIRKIALRRKFRKQNQRTVFIAANKNEDNSGSAQQTATKVVERKLPSGDKLMLALCFMFFILETPAFFSKILSSYTSTNYPTLDVYISVIANFLIYLDSTANVFVYMGSNPTFR 360          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A0R3TYW4 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS13037 PE=4 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.682e-35
Identity = 87/247 (35.22%), Postives = 133/247 (53.85%), Query Frame = 2
Query:  521 KALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKR------------------QTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSK-LAFYAFDNN---NIHIGIIPNLLIYLDSCLNLFIYLASNKTFR 1195
            K +A++ +   I    +  FQ+ARNWSV +LA +RYD +CR     +L   S+F   E +P I T  M+     ALPR+FE+   IC+ T +I +    L+   ++Q  YLG+  FI QSGGP++    +S  +IRKI  R   R++                  +    +   +R   +   L++A+C  F VLE P+FFSK L+ Y   N    ++++ +I N LIYLDS +N+F+Y+ SN TFR
Sbjct:  120 KLVASMTVSHQILSGFLFAFQVARNWSVVLLAAYRYDAICR-----KLGTVSSF-PRERIPWIMTATMVLSGLFALPRLFEIKSFICVPTVIIYNEEPLLAKNLMYQLLYLGIGTFIVQSGGPVLCVCILSFFVIRKIALRRKFRRQNKRTVFILSSGNEDNSCVEPQTATKTVERKLPSGDKLMLALCFMFFVLETPAFFSKILSSYTSTNYPTLDVYMSVIANFLIYLDSTVNVFVYMGSNPTFR 360          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: W6UQV1 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Echinococcus granulosus OX=6210 GN=EGR_01208 PE=4 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 6.718e-35
Identity = 103/334 (30.84%), Postives = 163/334 (48.80%), Query Frame = 2
Query:  308 YTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAIS------------YXXXXXXXXXXXXXXCQLTEPLKPFQ-YFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKI------------------QNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSK-LAFYAFDNN---NIHIGIIPNLLIYLDSCLNLFIYLASNKTFRKTS 1204
            Y  +   L   N+L N  ++ I    +W  + L+ ILK++S            +      L  ++N   QL + L  +Q    ++ +A + ++       +  FQ++RNWSV +LA +RYD +CR     +L   S+F   E +P I    +I     ALPRMFE+   IC  TA+I      L+    +Q  YLG+  FI QSGGP++    +S  +IRKI                           +  A +   +R+Q +   L++A+C TF +LE P+FFSK L+ Y    +   ++++ +I NLLIYLDS  N F+Y+ SN TFR+ +
Sbjct:   41 YNILVLALAPLNVLLNGLSLRIFEHRLWKNNSLSAILKSLSVFEICFGCSLFFHTITSKTLDLYVNKEGQLADNLTDYQSQHHVRLVAALIVIHQGLSGFLFAFQLSRNWSVVLLAAYRYDAICR-----KLGTVSSF-PRERIPLIMIITLISAGLFALPRMFEIKSYICAPTAIIYQEEPLLARSIFYQLIYLGIGTFIVQSGGPVLCVCVLSSFVIRKIAIRRRFRRQNQRTVLVTSSKDDPGSGVEPLAATKTVERNQPSGDKLMLALCFTFFILETPAFFSKILSSYTSKYHPTVDVYMSVIANLLIYLDSTFNAFVYMGSNPTFRQVA 368          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A068WHK8 (Rhodopsin orphan GPCR OS=Echinococcus granulosus OX=6210 GN=EgrG_000490100 PE=4 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.891e-35
Identity = 103/334 (30.84%), Postives = 163/334 (48.80%), Query Frame = 2
Query:  308 YTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAIS------------YXXXXXXXXXXXXXXCQLTEPLKPFQ-YFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKI------------------QNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSK-LAFYAFDNN---NIHIGIIPNLLIYLDSCLNLFIYLASNKTFRKTS 1204
            Y  +   L   N+L N  ++ I    +W  + L+ ILK++S            +      L  ++N   QL + L  +Q    ++ +A + ++       +  FQ++RNWSV +LA +RYD +CR     +L   S+F   E +P I    +I     ALPRMFE+   IC  TA+I      L+    +Q  YLG+  FI QSGGP++    +S  +IRKI                           +  A +   +R+Q +   L++A+C TF +LE P+FFSK L+ Y    +   ++++ +I NLLIYLDS  N F+Y+ SN TFR+ +
Sbjct:   41 YNILVLALAPLNVLLNGLSLRIFEHRLWKNNSLSAILKSLSVFEICFGCSLFFHTITSKTLDLYVNKEGQLADNLTDYQSQHHVRLVAALIVIHQGLSGFLFAFQLSRNWSVVLLAAYRYDAICR-----KLGTVSSF-PRERIPLIMIITLISAGLFALPRMFEIKSYICAPTAIIYQEEPLLARSIFYQLIYLGIGTFIVQSGGPVLCVCVLSSFVIRKIAIRRRFRRQNQRTVLVTSSKDDPGSGVEPLAATKTVERNQPSGDKLMLALCFTFFILETPAFFSKILSSYTSKYHPTVDVYMSVIANLLIYLDSTFNAFVYMGSNPTFRQVA 368          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Cavefish
Match: RHO (rhodopsin [Source:NCBI gene;Acc:103027557])

HSP 1 Score: 49.2914 bits (116), Expect = 6.291e-6
Identity = 52/217 (23.96%), Postives = 92/217 (42.40%), Query Frame = 2
Query:  596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPI-IITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIG----IIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231
            WS+ +LA+ RY +VC+  T  R   +            FT++M   +  A+P +   +  I       C   D+ + +         + MFI     P+ II  C S +L      R A  ++Q + ++   QR+++    +V+ + I F+V   P  ++ +A+Y F N     G     +P       +  N  IY+  N+ FR   L  + C K+
Sbjct:  126 WSLVVLAIERYVVVCKPMTTFRFGEKHAIVGVG-----FTWVM--ALTCAVPPLLGWSRYIPEGMQCSCG-IDYYTPKPEINNTSFVIYMFILHFSIPLFIIFFCYSRLLCTV---RAAAAQQQESEST---QRAEKEVTRMVVVMVIAFLVCWVP--YATVAWYIFANQGTEFGPVFMTVPAFFAKSAALYNPVIYILLNRQFRNCMLTTVCCGKN 326          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Medaka
Match: rho (KFH-Rh protein [Source:NCBI gene;Acc:100049259])

HSP 1 Score: 50.447 bits (119), Expect = 3.032e-6
Identity = 59/236 (25.00%), Postives = 99/236 (41.95%), Query Frame = 2
Query:  596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNEN---LPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITS-CVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIG----IIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS-FESWEIQTTMTVRVN 1276
            WS+ +LA+ R+ +VC+          SNF   EN   +  +FT++M      A+P +   +  I       C   D+ +  + F      V MF+     P+I+   C   +L    +   A ++ +T       QR++R    +V+ + I F+V   P  ++ +A+Y F N     G     IP       S  N  IY+  NK FR   +  + C K+ FE  E  +T   +  
Sbjct:  126 WSLVVLAIERWVVVCKPI--------SNFRFGENHAIMGLVFTWIM--AASCAVPPLVGWSRYIPEGMQCSCG-VDYYTRAEGFNNESFVVYMFVCHFLIPLIVVFFCYGRLLCAVKEAAAAQQESETT------QRAEREVTRMVVIMVIGFLVCWLP--YASVAWYIFTNQGSEFGPLFMTIPAFFAKSSSIYNPAIYICMNKQFRNCMITTLCCGKNPFEEEEGASTTASKTE 342          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Medaka
Match: RHO (rhodopsin [Source:HGNC Symbol;Acc:HGNC:10012])

HSP 1 Score: 49.6766 bits (117), Expect = 4.252e-6
Identity = 52/217 (23.96%), Postives = 91/217 (41.94%), Query Frame = 2
Query:  596 WSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPI-IITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIG----IIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKS 1231
            WS+ +LA+ RY +VC+  T  R       F  ++      F  +  +  A P +F  +  I       C   D+ + +         + MF+     P+ II  C S +L      R A   +Q + T+   QR++R    +V+ + I+F+V   P  ++ +A+Y F N     G     +P       +  N  IY+  N+ FR   +  + C K+
Sbjct:  126 WSLVVLAIERYVVVCKPMTNFR-------FEEKHAIAGLAFSWVMALTCAAPPLFGWSRYIPEGMQCSCG-IDYYTPKPEINNTSFVIYMFVLHFSIPLFIIFFCYSRLLCTV---RAAAALQQESETT---QRAEREVTRMVIVMVISFLVCWVP--YATVAWYIFANQGTEFGPVFMTVPAFFAKSAALYNPVIYILLNRQFRNCMITTVCCGKN 326          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000076138.1 (SMESG000076138.1)

HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 2
Query:  227 LVVDYGLVTFIRNCSSCLEKKNGMPITYTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAISYXXXXXXXXXXXXXXCQLTEPLKPFQYFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIGIIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKSFESWEIQTTMTVRVNNSEKNDKNEEF 1309
            LVVDYGLVTFIRNCSSCLEKKNGMPITYTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAISYFEILFNLLNFINNICQLTEPLKPFQYFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIGIIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKSFESWEIQTTMTVRVNNSEKNDKNEEF
Sbjct:   11 LVVDYGLVTFIRNCSSCLEKKNGMPITYTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAISYFEILFNLLNFINNICQLTEPLKPFQYFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIGIIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKSFESWEIQTTMTVRVNNSEKNDKNEEF 371          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000069446.1 (SMESG000069446.1)

HSP 1 Score: 195.667 bits (496), Expect = 5.021e-57
Identity = 123/343 (35.86%), Postives = 197/343 (57.43%), Query Frame = 2
Query:  242 GLVTFIRNCSSCLEKKNGMPIT--YTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAISYXXXXXXXXXXXXXXCQLTEPLKPFQYFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRS--KTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQ-------------------TNATSNRFQRS--QRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIGIIPNLLIYLDSCLNLFIYLASNKTFR 1195
            G+V F  NC SC +  N       Y ++++ L + N+  ++F++ ILS ++WNK  ++ +L++IS FE +FN   F+  + Q  + L P   +G++ +  VE++LL  D  ++ FQMARNWS+  L+ +RY MVCR+  +T R+L   +N F+ +N+  +   ++I C  ++ PR+ E  P+ICI+T  IC Y    +    F+Y Y+GV++F+FQ+ GP+ +    S M+IRKI  +  IR++                     N +  R  RS  ++N  +LV+ + + F +LE P FFSKL +  F+ +N H  I  N+LI  DS LNL IYL SN TFR
Sbjct:    8 GIVYFTNNCLSCSKGYNSSSFMKMYIWVSYTLSMINVFSHLFSLYILSHALWNKVTMSRLLRSISLFEAIFNFFMFLQILSQNYDFLIPSHKYGMRFVGFVELILLTVDVFVVTFQMARNWSLVFLSFYRYQMVCRATCETGRQLT--TNLFTLKNITFVDMIILIVCCAVSTPRILEELPEICIHTGAICSYLPNYAFNPWFKYCYIGVILFLFQNFGPVTLVVIFSSMVIRKIHLQSLIRQKSFGHSLTNNNGPREKILGTNLNNSKRRCSRSNLRQNSCSLVLLLSLCFAILEIPGFFSKLLWIVFNIHNEHFSICANILISFDSTLNLVIYLVSNSTFR 348          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000063294.1 (SMESG000063294.1)

HSP 1 Score: 159.073 bits (401), Expect = 1.864e-43
Identity = 115/369 (31.17%), Postives = 191/369 (51.76%), Query Frame = 2
Query:  245 LVTFIRNCSSCLEKKNGMPITYTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAIS-YXXXXXXXXXXXXXXCQLTEPLKPFQYFGLKALATVEILLLI-----CDSLMIGFQMARNWSVTILALFRYDMVCRS----KTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFD-----NNNIHIGIIPNLLIYLDSCLNLFIYLASNKTFRKTS---LNRIRCAKSFESWE--IQTTMTVRVNNSEKN 1291
            L+  +  C+   +        Y YIT +L   +IL N FA ++  +S+W KSV++ IL+ +S +  +    +    +I    E   P         + VE+++ I        LMI F +ARNW+V ILA +RY+ VCR     K +R        ++N NL   F F+    I +ALPRM E   +IC  T  +  +  FL   K + Y + G+++F+ Q+GGP+I+   +S  +++ I+    IRK   N    +    Q +   L++ +   F VLE P+FFSK+  + F+     N +IHIG++ N LIYLDS +N+ +Y+ SN TFR +S   L+++ C  S +  +  + + +T  +N + +N
Sbjct:   13 LIKLVTKCNFSSQNSIETDTIYKYITLILTPLSILSNTFAFVVFKESIWKKSVMSKILRMLSLFEILFNVNVLLEASIRHKIEEQHP---------SMVELVIFIYVITAAKVLMIVFLIARNWTVVILAGYRYEAVCRPVGSCKYIR--------YNNINLA--FCFIFALSILIALPRMMETKIEICQPTLSVNRFVPFLISYKWYLYLHTGILLFLIQNGGPVILVCFLSSCVLKVIRKMKKIRKSNFNLADKK-GSPQPSGDRLIVILSAAFFVLETPAFFSKILHHYFEYQGYYNLDIHIGLLANTLIYLDSIINVAVYVISNPTFRISSKALLSKLICKVSSQRGQDPMSSYVTYTINQTNRN 361          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000004763.1 (SMESG000004763.1)

HSP 1 Score: 125.176 bits (313), Expect = 3.749e-31
Identity = 113/367 (30.79%), Postives = 184/367 (50.14%), Query Frame = 2
Query:  230 VVDYGLVTFIRNCSSCLEKKNGMPITYTYITFVLVVTNILGNMFAVIILSDSVWNKSVL-TTILKAISYXXXXXXXXXXXXXXCQLTEPLKPFQYFGLKALATVEIL--LLICDSLM-IGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAVICHYADFLSVRKVFQYG--YLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNI--------HIGIIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKSFESWEIQTTMTVRVNNSEK 1288
            ++D  +VT     S        +   Y  I+  L+  N   N FA+ I S  +W+  +L   IL   S+ E++F +   +     L E +K  +Y          I+  L  C  L  +GF +ARN  + +LA  R++ +C     +R      + ++ N+   F  ++ F I +A PRMFE T   C+ T  + + ++ LS   V+QY   YL V +F+ Q G P++  + +S++++RKI  R ++  R+T+A  N+ ++S      LV+A+CITF   E PSFFSKL    F N++I        H+  I N+ IY+DS +NL IYL SN+ FR   L +I  +K      + TT  + +   E+
Sbjct:   22 LIDDQVVTNCSTNSGNFSASANIEKIYQIISITLLSINSFANCFALHIFSKFLWHMPILMNQILARFSFIELIFQMTLLLFY---LVEYIKIDEYIISSRFVNPGIMDALFRCIYLFSVGFLIARNSWIILLAFHRFECICYPLRTKR------YVTSANINFYFFGIVSFAILIAFPRMFEQTYTYCLQTGDVVNVSEALS--NVYQYRIIYLNVFVFLIQIGIPLLSVNILSILMLRKI--RQSLTFRRTSAAPNQKKKS-FAADKLVVALCITFFTFEMPSFFSKL----FHNSHIISNDKIIYHLTFIANISIYIDSSMNLLIYLVSNRIFRGAVLQQI--SKVSHKKTVSTTKYLTIAKKEE 368          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000022454.1 (SMESG000022454.1)

HSP 1 Score: 115.931 bits (289), Expect = 3.241e-28
Identity = 101/326 (30.98%), Postives = 150/326 (46.01%), Query Frame = 2
Query:  257 IRNCSSCLEKKNGMPITYTYITFVLVVTNILGNMFAVIILSDSVWNKSVLTTILKAIS-----YXXXXXXXXXXXXXXCQLTEPLKPFQYFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRSKTVRRLNNQSNFFSNENLPKIFTFLMIFCIGL--ALPRMFEVTPQICINTA-VICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRHAIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFDNNNIHIG-----IIPNLLIYLDSCLNLFIYLASNKTFR 1195
            I N S  +   N +   Y Y + VL   + L N  A+ I +  +W KS+ + ILK +S     +   +    ++ N   Q   P     +   ++L   E   L      I F + RN +V +LA  RY+ VC     +R  N  N F  E        L+IF + L  ALPR+FE     C      I     FL     + Y + GVV+FIFQSGGP+I    +S  +++ I+     R R     SN   R Q     ++  +C+ F +LE PSFFSK+      + N+ I      ++ N+ IY+DS +N FIY+ SN TF+
Sbjct:   12 ITNASGHVSYSNLLFTYYNYSSIVLSSISFLLNTLAIFIFNHRLWRKSLTSIILKYLSVFESLFNATVLIKNSYDNYAIQSKSP----NFSSYESLLIDETFRLFIRLFGIVFLICRNVTVAVLAAHRYECVCLPVGAKRRINSRNVFQIE--------LVIFLLALVIALPRLFEKYVVACAEPLWKIEGKVAFLDSSNWYVYLHKGVVLFIFQSGGPVITVFILSFYILQVIKKMKKFRNRN----SNNKVRPQPLGDKIIFPLCLIFFILESPSFFSKILEAYLRSKNLVIVDHTLLVVANICIYVDSIINFFIYIISNPTFK 321          
The following BLAST results are available for this feature:
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rho8.046e-624.56rhodopsin [Source:NCBI gene;Acc:100037900][more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Rho4.200e-624.20rhodopsin [Source:MGI Symbol;Acc:MGI:97914][more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q28886|OPSD_MACFA4.870e-625.11Rhodopsin OS=Macaca fascicularis OX=9541 GN=RHO PE... [more]
sp|P28681|OPSD_CRIGR6.024e-623.74Rhodopsin OS=Cricetulus griseus OX=10029 GN=RHO PE... [more]
sp|P31355|OPSD_LITPI7.152e-624.42Rhodopsin OS=Lithobates pipiens OX=8404 GN=RHO PE=... [more]
sp|P49912|OPSD_RABIT7.929e-625.11Rhodopsin OS=Oryctolagus cuniculus OX=9986 GN=RHO ... [more]
sp|P51470|OPSD_LITCT8.023e-624.42Rhodopsin OS=Lithobates catesbeianus OX=8400 GN=RH... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3P6SAQ61.462e-3733.43G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
A0A0R3SGW59.739e-3630.77G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
A0A0R3TYW45.682e-3535.22G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
W6UQV16.718e-3530.84G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
A0A068WHK87.891e-3530.84Rhodopsin orphan GPCR OS=Echinococcus granulosus O... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
RHO6.291e-623.96rhodopsin [Source:NCBI gene;Acc:103027557][more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rho3.032e-625.00KFH-Rh protein [Source:NCBI gene;Acc:100049259][more]
RHO4.252e-623.96rhodopsin [Source:HGNC Symbol;Acc:HGNC:10012][more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000076138.10.000e+0100.00SMESG000076138.1[more]
SMESG000069446.15.021e-5735.86SMESG000069446.1[more]
SMESG000063294.11.864e-4331.17SMESG000063294.1[more]
SMESG000004763.13.749e-3130.79SMESG000004763.1[more]
SMESG000022454.13.241e-2830.98SMESG000022454.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30000602 ID=SMED30000602|Name=G_PROTEIN_RECEP_F1_2 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1634bp
TTCACTTTCAGTTGAGTTCTCTGTGTGAAATGATTTGTATGAAATCTTTT
TAGTAAAATTTGATGAAAACAATTTGCTGCTGTTGCTCTTGTTTGCATGA
ATCCATCGGCCAATCACATGAATTTTTAATATTTATATAAATGGGATCAT
TTTCCTGTTGATTAATTAGCGTAAAACTGGGAGAAATCATTTACAAATGA
ATTCTAGTAATGCCAACAGCAGCAACTTGGTCGTTGACTACGGTTTGGTA
ACCTTCATTAGAAATTGCAGCTCCTGTTTGGAAAAGAAAAACGGTATGCC
AATCACCTATACTTATATTACATTCGTCTTGGTCGTTACTAATATTCTCG
GAAACATGTTCGCTGTGATCATTCTCTCCGATAGTGTTTGGAACAAGTCC
GTCCTAACTACAATTCTTAAAGCAATTTCATACTTTGAAATCCTTTTCAA
TTTGTTGAATTTCATCAATAACATATGCCAACTAACAGAGCCGTTGAAAC
CTTTTCAGTATTTTGGATTAAAAGCGTTAGCAACTGTTGAGATTCTTCTT
TTGATTTGTGATTCCTTGATGATTGGATTCCAAATGGCACGAAACTGGTC
CGTGACGATTCTTGCACTATTCCGGTACGATATGGTTTGTAGGTCGAAAA
CCGTGAGACGACTAAATAACCAATCGAATTTCTTCTCCAACGAAAATTTA
CCGAAAATATTCACTTTCCTCATGATTTTCTGTATTGGTTTAGCTTTGCC
ACGAATGTTTGAAGTTACTCCCCAGATTTGCATAAACACAGCAGTCATAT
GTCATTATGCCGATTTCCTGAGTGTAAGGAAAGTATTCCAGTATGGCTAT
CTAGGAGTTGTAATGTTTATTTTTCAATCTGGTGGCCCGATTATTATTAC
AAGCTGTGTTAGTTTAATGCTTATTAGAAAGATTCAAAATCGTCATGCGA
TACGTAAAAGACAAACGAACGCAACCTCAAATCGATTCCAGAGATCACAA
AGAAACCCAGGAACACTTGTAATGGCTGTTTGTATAACCTTTATGGTTCT
TGAATTTCCATCATTCTTTAGCAAACTAGCGTTCTATGCATTTGACAATA
ACAATATTCACATTGGTATTATTCCGAATCTTCTCATTTATCTCGACTCT
TGCTTGAATTTATTCATTTATTTGGCGTCAAATAAAACCTTCCGGAAAAC
AAGTCTTAATAGGATTCGTTGTGCCAAGTCTTTCGAATCTTGGGAAATTC
AAACAACAATGACAGTAAGAGTCAACAATAGCGAGAAAAACGATAAAAAT
GAGGAATTTTAACCATAACATTTTGTATTATTGATTTTTAGAAATCTTCG
GAAATTTTGGTGCTTTTTCCTGATTTTTCTTGGAAAAATACTTATTGCAT
GCATTTTGATAATAAATCAAACTGTCTGCCAGTGGAGGATGGAATGTTCA
ACACTGTTGGATCCGTGGATGACTGAAGAATAGTTAGAATAACACTAAAT
TTTAACACTCAGACTTTTATTAAACTTTTCGATATTTATATGTCGGTCTG
TTTAAAAAATCTTTTAAATTCTAAATGTGGCAAATTTGCATTTGATTCGC
ATAATATGCATATTATTTATCTTATTTCCTTCAT
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protein sequence of SMED30000602-orf-1

>SMED30000602-orf-1 ID=SMED30000602-orf-1|Name=SMED30000602-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=372bp
MNSSNANSSNLVVDYGLVTFIRNCSSCLEKKNGMPITYTYITFVLVVTNI
LGNMFAVIILSDSVWNKSVLTTILKAISYFEILFNLLNFINNICQLTEPL
KPFQYFGLKALATVEILLLICDSLMIGFQMARNWSVTILALFRYDMVCRS
KTVRRLNNQSNFFSNENLPKIFTFLMIFCIGLALPRMFEVTPQICINTAV
ICHYADFLSVRKVFQYGYLGVVMFIFQSGGPIIITSCVSLMLIRKIQNRH
AIRKRQTNATSNRFQRSQRNPGTLVMAVCITFMVLEFPSFFSKLAFYAFD
NNNIHIGIIPNLLIYLDSCLNLFIYLASNKTFRKTSLNRIRCAKSFESWE
IQTTMTVRVNNSEKNDKNEEF*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR0194277TM_GPCR_serpentine_rcpt_Srw
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: molecular function
TermDefinition
GO:0008528G-protein coupled peptide receptor activity
GO:0004930G-protein coupled receptor activity
Vocabulary: cellular component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: biological process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.20.1070.10coord: 28..347
e-value: 6.9E-26
score: 92.9
NoneNo IPR availablePANTHERPTHR46641FAMILY NOT NAMEDcoord: 36..364
NoneNo IPR availableCDDcd149787tmA_FMRFamide_R-likecoord: 36..335
e-value: 1.09625E-18
score: 83.4512
NoneNo IPR availableSUPERFAMILYSSF81321Family A G protein-coupled receptor-likecoord: 26..363
NoneNo IPR availableTMHMMTMhelixcoord: 162..184
NoneNo IPR availableTMHMMTMhelixcoord: 68..90
NoneNo IPR availableTMHMMTMhelixcoord: 306..328
NoneNo IPR availableTMHMMTMhelixcoord: 39..61
NoneNo IPR availableTMHMMTMhelixcoord: 272..291
NoneNo IPR availableTMHMMTMhelixcoord: 221..243
NoneNo IPR availableTMHMMTMhelixcoord: 105..127
IPR0194277TM GPCR, serpentine receptor class w (Srw)PFAMPF103247TM_GPCR_Srwcoord: 41..340
e-value: 1.4E-6
score: 27.9
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 52..325
score: 13.491