SMED30000590

Overview
NameSMED30000590
Smed IDSMED30000590
Length (bp)3867
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30000590 (SMED30000590) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30000590 (SMED30000590) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30000590 (SMED30000590) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30000590 (SMED30000590) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30000590

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30000590SMESG000077498.1 SmedASXL_009165SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30000590SMESG000077498.1 SmedASXL_010525SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30000590 vs. Planmine SMEST
Match: SMESG000077498.1 (SMESG000077498.1)

HSP 1 Score: 1281.54 bits (3315), Expect = 0.000e+0
Identity = 641/643 (99.69%), Postives = 641/643 (99.69%), Query Frame = 3 
Query:  273 QRLSSQTSHSIQTVNNTYIAKEAKDLNEEILILKGQHKITERKFKSQLNSRDEEIKLLKEQLFQIQTESANSIKSLTSQLKFQEASLHGANQQSMHLKAINDSINESTEAGKLTNIKVISASPVRKRKQIEFESDFTIKSQQPKKCKTLSFKNLDNSFLQFSEIDAEKQSTESLNIPKKMLPSTSEKVMIPKVKSESQTVSNIKENKLCICDTSSKENLKPESSDIYQIFNYTLDISDENDAWNLIGLSEFKSTLDCCVPINYDNMFGFIVKAMQKFIPLFKSCINTNYPEIIDEENMKELLKLVSLQFQRLCISMCKRKGSVDNMLDDIMGRKIFNKLELLINPQYSCLYHYIYPASEVIKKMMHIAHYHSNYVGEFVMECLLPTLVKIINYFVIDFCCIPHSKNNITFHCRTYMDGVENMFLKNMLIALIQMITLSSGSLKDCILQKICKYFNKLVPLFASKLNLKIVTIKLFCEMINYPMFLDMLSQHNAQDTCLINIIMDILNCKCIQEKSQIELIEFSNNVAQIFFTLHLADFKWDASCSCSNEMXXXXXXXXXXXXKHISETQWTEDNKKCIQNILIVYSQLKISFRASANYEFTKISNPYEFFVHLDYLVDSQHPLLIEDTWPLEYSWFNQLMTDT 2201
            QRLSSQTSHSIQTVNNTYIAKEAKDLNEEILILKGQHKITERKFKSQLNSRDEEIKLLKEQLFQIQTESANSIKSLTSQLKFQEASLHGANQQSMHLKAINDSINESTEAGKLTNIKVISASPVRKRKQIEFESDFTIKSQQPKKCKTLSFKNLDNSFLQFSEIDAEKQSTESLNIPKKMLPSTSEKVMIPKVKSESQTVSNIKENK CICDTSSKENLKPESSDIYQIFNYTLDISDENDAWNLIGLSEFKSTLDCCVPINYDNMFGFIVKAMQKFIPLFKSCINTNYPEIIDEENMKELLKLVSLQFQRLCISMCKRKGSVDNMLDDIMGRKIFNKLELLINPQYSCLYHYIYPASEVIKKMMHIAHYHSNYVGEFVMECLLPTLVKIINYFVIDFCCIPHSKNNITFHCRTYMDGVENMFLKNMLIALIQMITLSSGSLKDCILQKICKYFNKLVPLFASKLNLKIVTIKLFCEMINYPMFLDMLSQHNAQDTCLINIIMDILNCKCIQEKSQIELIEFSNNVAQIFFTLHLADFKWDASCSCSNEMILLINNISVNISKHISETQWTEDNKKCIQNILIVYSQLKISFRASA YEFTKISNPYEFFVHLDYLVDSQHPLLIEDTWPLEYSWFNQLMTDT
Sbjct:   71 QRLSSQTSHSIQTVNNTYIAKEAKDLNEEILILKGQHKITERKFKSQLNSRDEEIKLLKEQLFQIQTESANSIKSLTSQLKFQEASLHGANQQSMHLKAINDSINESTEAGKLTNIKVISASPVRKRKQIEFESDFTIKSQQPKKCKTLSFKNLDNSFLQFSEIDAEKQSTESLNIPKKMLPSTSEKVMIPKVKSESQTVSNIKENKFCICDTSSKENLKPESSDIYQIFNYTLDISDENDAWNLIGLSEFKSTLDCCVPINYDNMFGFIVKAMQKFIPLFKSCINTNYPEIIDEENMKELLKLVSLQFQRLCISMCKRKGSVDNMLDDIMGRKIFNKLELLINPQYSCLYHYIYPASEVIKKMMHIAHYHSNYVGEFVMECLLPTLVKIINYFVIDFCCIPHSKNNITFHCRTYMDGVENMFLKNMLIALIQMITLSSGSLKDCILQKICKYFNKLVPLFASKLNLKIVTIKLFCEMINYPMFLDMLSQHNAQDTCLINIIMDILNCKCIQEKSQIELIEFSNNVAQIFFTLHLADFKWDASCSCSNEMILLINNISVNISKHISETQWTEDNKKCIQNILIVYSQLKISFRASAYYEFTKISNPYEFFVHLDYLVDSQHPLLIEDTWPLEYSWFNQLMTDT 713

HSP 2 Score: 71.2478 bits (173), Expect = 3.778e-12
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:   67 MNQNTGEFINYDFEEIILEFTAACVKDDFEXXXXXXXXXXHQNQ 198
            MNQNTGEFINYDFEEIILEFTAACVKDDFETSSNSTFTTSHQNQ
Sbjct:    1 MNQNTGEFINYDFEEIILEFTAACVKDDFETSSNSTFTTSHQNQ 44
[Close]
BLAST of SMED30000590 vs. Planmine SMEST
Match: SMESG000077498.1 (SMESG000077498.1)

HSP 1 Score: 1253.43 bits (3242), Expect = 0.000e+0
Identity = 631/643 (98.13%), Postives = 631/643 (98.13%), Query Frame = 3 
Query:  273 QRLSSQTSHSIQTVNNTYIAKEAKDLNEEILILKGQHKITERKFKSQLNSRDEEIKLLKEQLFQIQTESANSIKSLTSQLKFQEASLHGANQQSMHLKAINDSINESTEAGKLTNIKVISASPVRKRKQIEFESDFTIKSQQPKKCKTLSFKNLDNSFLQFSEIDAEKQSTESLNIPKKMLPSTSEKVMIPKVKSESQTVSNIKENKLCICDTSSKENLKPESSDIYQIFNYTLDISDENDAWNLIGLSEFKSTLDCCVPINYDNMFGFIVKAMQKFIPLFKSCINTNYPEIIDEENMKELLKLVSLQFQRLCISMCKRKGSVDNMLDDIMGRKIFNKLELLINPQYSCLYHYIYPASEVIKKMMHIAHYHSNYVGEFVMECLLPTLVKIINYFVIDFCCIPHSKNNITFHCRTYMDGVENMFLKNMLIALIQMITLSSGSLKDCILQKICKYFNKLVPLFASKLNLKIVTIKLFCEMINYPMFLDMLSQHNAQDTCLINIIMDILNCKCIQEKSQIELIEFSNNVAQIFFTLHLADFKWDASCSCSNEMXXXXXXXXXXXXKHISETQWTEDNKKCIQNILIVYSQLKISFRASANYEFTKISNPYEFFVHLDYLVDSQHPLLIEDTWPLEYSWFNQLMTDT 2201
            QRLSSQTSHSIQTVNNTYIAKEAKDLNEEILILKGQHKITERKFKSQLNSRDEEIKLLKEQLFQIQTESANSIKSLTSQLKFQEASLHGANQQSMHLKAINDSINESTEA          ASPVRKRKQIEFESDFTIKSQQPKKCKTLSFKNLDNSFLQFSEIDAEKQSTESLNIPKKMLPSTSEKVMIPKVKSESQTVSNIKENK CICDTSSKENLKPESSDIYQIFNYTLDISDENDAWNLIGLSEFKSTLDCCVPINYDNMFGFIVKAMQKFIPLFKSCINTNYPEIIDEENMKELLKLVSLQFQRLCISMCKRKGSVDNMLDDIMGRKIFNKLELLINPQYSCLYHYIYPASEVIKKMMHIAHYHSNYVGEFVMECLLPTLVKIINYFVIDFCCIPHSKNNITFHCRTYMDGVENMFLKNMLIALIQMITLSSGSLKDCILQKICKYFNKLVPLFASKLNLKIVTIKLFCEMINYPMFLDMLSQHNAQDTCLINIIMDILNCKCIQEKSQIELIEFSNNVAQIFFTLHLADFKWDASCSCSNEMILLINNISVNISKHISETQWTEDNKKCIQNILIVYSQLKISFRASA YEFTKISNPYEFFVHLDYLVDSQHPLLIEDTWPLEYSWFNQLMTDT
Sbjct:   71 QRLSSQTSHSIQTVNNTYIAKEAKDLNEEILILKGQHKITERKFKSQLNSRDEEIKLLKEQLFQIQTESANSIKSLTSQLKFQEASLHGANQQSMHLKAINDSINESTEA----------ASPVRKRKQIEFESDFTIKSQQPKKCKTLSFKNLDNSFLQFSEIDAEKQSTESLNIPKKMLPSTSEKVMIPKVKSESQTVSNIKENKFCICDTSSKENLKPESSDIYQIFNYTLDISDENDAWNLIGLSEFKSTLDCCVPINYDNMFGFIVKAMQKFIPLFKSCINTNYPEIIDEENMKELLKLVSLQFQRLCISMCKRKGSVDNMLDDIMGRKIFNKLELLINPQYSCLYHYIYPASEVIKKMMHIAHYHSNYVGEFVMECLLPTLVKIINYFVIDFCCIPHSKNNITFHCRTYMDGVENMFLKNMLIALIQMITLSSGSLKDCILQKICKYFNKLVPLFASKLNLKIVTIKLFCEMINYPMFLDMLSQHNAQDTCLINIIMDILNCKCIQEKSQIELIEFSNNVAQIFFTLHLADFKWDASCSCSNEMILLINNISVNISKHISETQWTEDNKKCIQNILIVYSQLKISFRASAYYEFTKISNPYEFFVHLDYLVDSQHPLLIEDTWPLEYSWFNQLMTDT 703

HSP 2 Score: 71.2478 bits (173), Expect = 3.838e-12
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:   67 MNQNTGEFINYDFEEIILEFTAACVKDDFEXXXXXXXXXXHQNQ 198
            MNQNTGEFINYDFEEIILEFTAACVKDDFETSSNSTFTTSHQNQ
Sbjct:    1 MNQNTGEFINYDFEEIILEFTAACVKDDFETSSNSTFTTSHQNQ 44
The following BLAST results are available for this feature:
BLAST of SMED30000590 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000590 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000590 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000590 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000590 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000590 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000590 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000590 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000590 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000590 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000590 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000590 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000590 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000590 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000077498.13.778e-1299.69SMESG000077498.1[more]
SMESG000077498.13.838e-1298.13SMESG000077498.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30000590 ID=SMED30000590|Name=SMED30000590|organism=Schmidtea mediterranea sexual|type=transcript|length=3867bp
TCAATTAAGTTATATTATTATTATAATATATCATTTAACATAATTAAAAT
TATCGTTTTTAACTTAATGAATCAGAATACTGGAGAATTTATAAACTATG
ATTTTGAAGAAATAATTCTCGAGTTTACTGCAGCTTGTGTAAAGGATGAT
TTTGAAACAAGTTCAAATAGTACATTTACTACTTCACATCAAAATCAATA
GTGTCCGTTCCAGTTTCTGTAAGCAATATTTCAAATAATCAAAATACAAA
TCAGAATCTGCCTACGACATCTCAAAGATTGTCTAGCCAAACATCTCATT
CCATTCAGACTGTTAATAATACTTATATCGCCAAAGAAGCAAAAGATTTA
AATGAAGAAATTCTGATTTTGAAAGGTCAACATAAAATTACTGAAAGAAA
ATTTAAGTCACAATTAAACAGTCGAGATGAAGAAATTAAGTTGTTAAAAG
AACAATTATTTCAAATTCAAACCGAATCTGCAAATTCAATTAAATCATTA
ACTTCTCAATTAAAATTTCAAGAAGCTTCATTACATGGAGCCAATCAGCA
ATCTATGCACTTGAAAGCCATTAATGATTCGATAAATGAATCAACTGAAG
CAGGAAAGCTAACGAACATAAAAGTGATTTCAGCGTCTCCCGTTCGTAAA
AGAAAACAAATTGAATTTGAAAGTGATTTTACTATCAAATCTCAACAACC
CAAAAAATGTAAAACTCTTTCATTCAAAAATTTAGATAATTCTTTTTTAC
AATTTTCTGAAATTGATGCTGAAAAACAGTCAACTGAATCTTTGAATATT
CCAAAGAAAATGTTGCCGAGTACCAGTGAGAAGGTGATGATTCCGAAAGT
GAAATCTGAATCACAGACTGTGTCGAATATCAAAGAAAATAAACTTTGTA
TTTGCGATACATCGTCAAAAGAAAATTTAAAACCTGAATCGTCAGATATT
TATCAAATTTTCAATTATACATTAGATATATCAGATGAAAATGATGCTTG
GAATCTGATTGGATTGTCAGAATTTAAATCTACTCTTGATTGCTGCGTAC
CAATAAACTACGATAATATGTTTGGATTTATAGTTAAAGCGATGCAAAAA
TTCATTCCTCTTTTCAAAAGCTGTATAAATACGAATTATCCCGAAATTAT
AGACGAGGAAAATATGAAAGAATTACTTAAATTGGTATCGCTGCAATTTC
AGAGATTATGTATATCTATGTGTAAAAGAAAAGGCAGTGTTGATAATATG
CTTGATGATATTATGGGAAGGAAAATATTTAATAAATTGGAATTGTTGAT
TAATCCTCAGTATTCTTGTTTATATCATTATATTTATCCGGCATCAGAAG
TAATCAAGAAGATGATGCACATTGCACATTATCATTCAAATTATGTTGGA
GAGTTCGTAATGGAATGTTTACTTCCAACACTAGTCAAAATAATTAACTA
TTTTGTGATTGATTTCTGTTGCATTCCTCATTCTAAGAATAATATTACCT
TTCACTGTCGGACGTACATGGATGGTGTTGAAAACATGTTTCTTAAAAAT
ATGCTAATTGCATTAATTCAAATGATCACACTATCCTCTGGCAGTTTGAA
AGATTGCATTCTCCAAAAAATTTGCAAATATTTCAACAAACTAGTTCCAT
TATTTGCTTCCAAACTAAATTTGAAAATCGTCACTATTAAGCTATTTTGT
GAAATGATCAACTATCCTATGTTCCTAGATATGCTTTCTCAGCATAATGC
ACAAGATACCTGCTTAATTAATATTATTATGGACATTTTAAATTGCAAAT
GCATCCAAGAAAAGTCACAAATCGAACTGATTGAATTTTCTAATAATGTC
GCTCAAATATTCTTTACTTTACACCTGGCAGATTTCAAGTGGGATGCTTC
GTGCTCTTGTTCTAATGAGATGATTTTGTTGATTAACAATATAAGTGTAA
ATATCTCAAAGCATATATCAGAGACCCAGTGGACTGAAGATAACAAAAAA
TGCATCCAAAATATTCTTATTGTTTATAGTCAATTGAAAATTTCTTTCAG
AGCAAGTGCTAATTACGAGTTTACTAAAATTTCGAACCCTTATGAATTTT
TTGTACATCTGGATTATCTGGTAGATTCCCAGCATCCTTTACTAATAGAA
GACACTTGGCCATTGGAATACAGCTGGTTTAATCAATTAATGACAGATAC
TAAATTTTTCTATAAAAAATAAAATTTTTTGAAATAATCGATTTTAATAA
TTTTAATCAAAATAAATTTCCTACTTTTTTGATTTTACAGATTCTGAAGT
TTTTTTTAATAATTTGATAACACCAACAACAGTTTGTTTCATATCTTGAA
TAGCAAAACGACCCAATAATGGGCATTAAATGAATGTTTCAAGACACTTT
AGTTTGGCCGTTGAAACTTTCTATTTTGGCCTGTAGCGAATTAATAAATG
TTAGGGGGCTTTCAAGCGCTATTGGGACAAGTGGTCTTTCATAGAATAAA
TCAACGTTTAAAATTAATAATTTTTGTGATTTTGCAATCGAAATAATTAG
AAGTTTTATTACATTTGTAGTGCAAATGAGTCAATTATTAAGTAACTTAT
TCAATCCGGATAGTTTTGAGATGACTATAGGGGTTTGTAGGAATTTGTGC
AATGCTGAGTAATGTATCACAAGGTGCTAAATATCAAGGTCAAAAACATC
AGATAGCTTGCACTGGGGAAACTGTTATAATGAAGGGGTTTTGTAAAGAA
TTTTGTATTGATTAGTGGGCTGTAGTCAAAAAGTTTGGGAACCACTGATC
TATAATATGAAATGAAAATAATGCAAATTGATAGTGATACTGGTAGAAAA
ATGTTTAAATGTGTATGTAAGGAAAATTTAAGCGCTTACATTTTTTACGT
TCATGTTTTAGGATAATAATGAATTTTATACGTTAAAAATACATTCATAG
AAATTTGATTATAAAGTGAAATGTTTATTTGCATAAAAAATATTTATAAA
ATCTCTTATTTTATGATTAAAAACTAATATAAAATAAATGTCCCTTAAAA
TTTTATTTTAACCTAATCTAAAATGATGCGTTTCTTACAACAAAACCCAA
CACAAATAGGCTTGTCAATAATATAACAATTGCTTAATCTAAATTAACAA
TGATTTAAACTCAAATCTAATAGGCATGGGACCCAAAAGGAAACCACTTA
AAATTATTTCCATACCTATAAATAAGTAAAAGTTAATCAACCTTTTGCTT
TATACACTTTGATGCAATCAGTTATATTCGTTGGGGCTCTTCCTGTAAAA
TTTCACTTCGATTTGGAATTGGAACTTTAAATATATTGAATAGTAGCCAA
TTTTCGTTTCTTGGTTTTATTTAATTTAAAAATAAGGCAAAAACTTTTAA
TGGTACAAGCTCAAAAAGAAATCCGACTAGAAATGCAATACAAATTGAAA
AATTAATTCACATCTTTGACAAATGAACGCAAACGGAAAATCGAAACCAA
AATAATGATCTATGAATGAAAATTTCACTATAACTTCAAATTACCCTAAA
CAAAATCGTGGAAATTTCTTTCCACCAATTTGAATCCCAATAGTATTGCT
TTTCTTTGTCCTACACTATTTTGTGAATTCAAATTGATAAGCTTGTGGAA
CTTTTAATTGAAAATAGAAAAGTCTAATTTCAGATACGATCTCAAATTCC
GATTCTGAAATCTAATTAGAAAATTAAATTTGGAATTTGAACATCCTTGT
TAATTATGAAAAAATAGTTCCATTAAATCAATTTTTAATTTTCCAATTAC
ATTAAAAAATTCTTTTTTAAAAACTCTTTGATTATGAATCAGTAAAGATA
TCATAAATTTTCGGGAC
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protein sequence of SMED30000590-orf-1

>SMED30000590-orf-1 ID=SMED30000590-orf-1|Name=SMED30000590-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=556bp
MHLKAINDSINESTEAGKLTNIKVISASPVRKRKQIEFESDFTIKSQQPK
KCKTLSFKNLDNSFLQFSEIDAEKQSTESLNIPKKMLPSTSEKVMIPKVK
SESQTVSNIKENKLCICDTSSKENLKPESSDIYQIFNYTLDISDENDAWN
LIGLSEFKSTLDCCVPINYDNMFGFIVKAMQKFIPLFKSCINTNYPEIID
EENMKELLKLVSLQFQRLCISMCKRKGSVDNMLDDIMGRKIFNKLELLIN
PQYSCLYHYIYPASEVIKKMMHIAHYHSNYVGEFVMECLLPTLVKIINYF
VIDFCCIPHSKNNITFHCRTYMDGVENMFLKNMLIALIQMITLSSGSLKD
CILQKICKYFNKLVPLFASKLNLKIVTIKLFCEMINYPMFLDMLSQHNAQ
DTCLINIIMDILNCKCIQEKSQIELIEFSNNVAQIFFTLHLADFKWDASC
SCSNEMILLINNISVNISKHISETQWTEDNKKCIQNILIVYSQLKISFRA
SANYEFTKISNPYEFFVHLDYLVDSQHPLLIEDTWPLEYSWFNQLMTDTK
FFYKK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell