SMED30000573
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30000573 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Alignments
SMED30000573 aligns in the following genomic locations:
Homology
BLAST of SMED30000573 vs. Ensembl Human
Match: PTCD3 (pentatricopeptide repeat domain 3 [Source:HGNC Symbol;Acc:HGNC:24717]) HSP 1 Score: 83.1889 bits (204), Expect = 8.448e-16 Identity = 125/505 (24.75%), Postives = 221/505 (43.76%), Query Frame = -1 Query: 716 KEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFED-KKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQE--YESSKFSPEITQELLDLLCFGIRLNNNYLETQPE-EFYFSNDVYSE---------------------WNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEM--RSIYPDSFPNTKTCNLLLRSLESFSCN-DDSFLIKI--LMKILTGMSFYQVAPDVFTFNNAIYAI---NTRSRTAGLIENLYTEMRYLNIEPTLGTFCLIF----QCRNFRKNHAAMVIDLITILSQRR---KDNIFEEVHTKDDLLLFRYAMQSLNESRSDELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRINGKAFK 2110 +E+ IP K D +++L+ L++ V ++++ Y DDP L S+ SR +LL+K SG A+ KY IA EP I LMP E ++K + E AL+ I L K + + + + S E T LLDLLC+ Y + +P +++F SE W N AE +F + K++ +Y +MI G K R +A+ L+ E+ ++ D + T N L +E+ C ++ F K ++++L M +V P++ TFN + + + +R+ L + EM+ + IEP+L T+ I Q + K + ++ D++ L +R KD DD F+ AM + R ELA +++ + G IG + Y+ F++ I + +D +K + ++P+ + LL + + ++P+I + G F+ Sbjct: 55 EEVVIPKKKTWDKVAVLQALASTVNRDTTAVPYVFQDDPYL-MPASSLESRSFLLAKKSGENVAKFIINSYPKYFQKDIA--EPHIPCLMP----EYFEPQIKDIS---EAALKERIELRKVKASVDMFDQLLQAGTTVSLETTNSLLDLLCY-------YGDQEPSTDYHFQQTGQSEALEEENDETSRRKAGHQFGVTWRAKNNAERIFSLMPEKNEHSYCTMIRGMVKHRAYEQALNLYTELLNNRLHADVY----TFNAL---IEATVCAINEKFEEKWSKILELLRHMVAQKVKPNLQTFNTILKCLRRFHVFARSPAL--QVLREMKAIGIEPSLATYHHIIRLFDQPGDPLKRSSFIIYDIMNELMGKRFSPKD--------PDDDKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYSKFFDL-ICLMEQIDVTLKWYEDLIPSAYFPHSQTMIHLLQALDVANRLEVIPKIWKDSKEYGHTFR 524
BLAST of SMED30000573 vs. Ensembl Celegans
Match: let-630 (pep chromosome:WBcel235:I:5162599:5164884:-1 gene:WBGene00002804.1 transcript:Y110A7A.19.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:let-630) HSP 1 Score: 59.3066 bits (142), Expect = 7.981e-9 Identity = 88/361 (24.38%), Postives = 159/361 (44.04%), Query Frame = -1 Query: 1163 RKHLGKFLSTCHYSLSVSNFHIPKEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSA-QLAFEDKKYDFLKIAKEEPKIKILMPM-ISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQEYESSKF--SPEITQELLDLLCFGIRLNNNYLETQPEEFY----FSNDVYSEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPT---RAIELFNEMRS----IYPDSFPNTKTCNLLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINTRSRTAGLIEN-------LYTEMRYLNIEPTLGTFCLIFQ 2179 R LG+ ++ SLS + +++ I I R +L LS V ++++P + IDDP ++ + S+ + Y ++K G+ +A +LA E +++P++ + P ++ VE E L +I+ + ++ + Y+ S S ++ EL L+ + N + E EEF F D S W A++LF++L K+ MI G K + + RA EL+ E R+ +Y ++F L S+S K++ M ++ PD+FTFN A+ + + AG E+ + EM+ + +EP L +F LI + Sbjct: 4 RMGLGRVITR---SLSSVEPALSQKLTIQPAIERSPTDLLNALSETVGPDTTAPHFAYIDDP-ITIPSTQSTKKTYFMAKEFGKRAARELATEWPT--LFAFDRDQPQLPVFRPRHLADPLQVEPT-------ENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEW--EEFVGMRNFGEDSTSSWKSGAVADLLFETL-PKTDETVSIMIAGLCKFSDHSSLERARELYKEHRAAKGKVYREAFNG-------LIGASSYSVGK---------KLVAEMISLRMTPDIFTFN----ALLSSAAKAGKFEDRVKAFTEIIGEMKEIGVEPALSSFHLIIK 328
BLAST of SMED30000573 vs. Ensembl Fly
Match: CG4679 (gene:FBgn0033816 transcript:FBtr0087759) HSP 1 Score: 110.153 bits (274), Expect = 1.035e-24 Identity = 125/501 (24.95%), Postives = 232/501 (46.31%), Query Frame = -1 Query: 710 STCHYSLSVSNFHIPKEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEE--IVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQ--EYESSKFSPEITQELLDLLCFGIRLNNNYLETQPEEFYFSNDVYSE-----WNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEM--RSIYPDSFPNTKTCNLLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINT-----RSRTAGLIENLYTEMRYLNIEPTLGT--FCLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEVHTKDDLLLFRYAMQSLNESRSDE-LALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRINGKAFKES 2155 S HY+ + P I+IPN+I R +L+ L++ V + ++P Y DDP L +SN++ R Y +SK SGR +A+ E+ + F+ + +P I+ P + + E +V+ E +L +I+ + +A L Y E + + SPE+ Q LL+L+CF E E ++ N+ E W + AE L+ ++ K+ +Y S+I G +K RA L E + + D T T N ++ + SF + ++ +L MS ++ P++ T N + I+T +R A L E + L + P+LG+ + LI CR R + +++D++ +S + F+ H K D F AM D+ LA K++E+ G ++G++F Y+++ + + +T+ + M + +VPN++ P + +L + + +P + + + +ES Sbjct: 22 SGAHYTTAAPAEDAP--IEIPNRIERSPTDLLQALASTVARDYTAPHYKYHDDPFL-IPMSNAAKRTYAMSKESGRKAAKWIKEEHRELFMH-QEAQPAIEKFAPSMVYTEDSVVD---------ETSLAQLISQGELKDAVLVYNLLEQKGNPISPELKQSLLELVCFHNNQEPIPEEYIEERWFLQNNKRRERSGKTWKDGDLAEKLYSEIEPKTPQSYASLIRGMAKYLQCERAYALLQEAGEKQVQLD----TNTFNSVIE-IVSFLKDTAEQRWQLCKDLLNEMSQQKLRPNLGTLNAVLQCISTFGNFKVARAAAL--QALPEFKQLGVNPSLGSYYYLLIIFCRE-RGPVSHVIVDILNDISGKE----FQIQHPK-DTYFFATAMDVCRNHLHDKSLAKKVDELLHTGKNYDLVGDSFKESIYYRNYLAL-LCQTESTEDFMLSYDLLVPNIYIPEPGIMEEILRAIEINGAVEYVPRLWSDMVVFDHTHRES 495
BLAST of SMED30000573 vs. Ensembl Zebrafish
Match: ptcd3 (pentatricopeptide repeat domain 3 [Source:NCBI gene;Acc:553325]) HSP 1 Score: 57.7658 bits (138), Expect = 3.912e-8 Identity = 117/501 (23.35%), Postives = 207/501 (41.32%), Query Frame = -1 Query: 752 KEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQE--YESSKFSPEITQELLDLLCFGIRLNNNYLETQPEEFYFSNDVYSE--------------------------WNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEMRSIYPDSFPNTKTC-----NLLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINTRSRTAGLIEN-----LYTEMRYLNIEPTLGTFCLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFE---EVHTK-------DDLLLFRYAMQSLNESRSDELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEI 2110 +EI IP K ++L+ L++ VK + ++ Y L DD + + S + + S+ SGR +A+ F +K + + +P I LMP + E +E V E AL+ I L K A Y + + S ++T +LLDL+C Y E P + F + SE W +N AE +F L + +Y ++I G K T+A S Y D N N LL ++ + + ++++ +L M+ +V P++ T N AI R G + + +EM+ L+IEP+L ++ NH + Q D + E EV K DD F AM+ +++ E A +++E+ G +G++F Y+ F++ + +++D +MK + +VP+++ + + LL + L+P+I Sbjct: 45 EEIVIPKKKTWSKEAVLQALASTVKRDPTASDYRLQDD-SFLTPKTASDFKLFCRSQESGRNAAKY-FINKYPKYFEKDYAQPHIPCLMPE-TLEAQLEDVS------EAALKERIQLRKVKAAVDLYDQLLQAGTSVSLDLTNDLLDLICL-------YGEADPVQETFEAEQRSEEMEDIQDETQTKKGRSPKASDLLKTSWKENNNAERIFGLLSEPNTRSYSALIRGMVKHAAYTQAF-------STYTDLLNNRLKADVHIFNALLAAVPAVRPKYNEKW-ELILDLLKQMAEQKVKPNLLTLN----AILKSLRRCGALGRSQAFPVISEMKVLSIEPSLASY-----------NHLLAIFYRSGAQVQTPTDVLVEVMNEVSGKSFTPQDPDDAQFFTTAMRVCLDTKDMEQAYRVHELLGVGDNWRFMGSDFQQSIYYAWFFSL-LCMMENIDVVMKWYRDLVPSVYYPSSNAMSDLLRALDTDSRLDLIPKI 505
BLAST of SMED30000573 vs. Ensembl Xenopus
Match: ptcd3 (pentatricopeptide repeat domain 3 [Source:NCBI gene;Acc:548397]) HSP 1 Score: 84.7297 bits (208), Expect = 2.101e-16 Identity = 118/505 (23.37%), Postives = 219/505 (43.37%), Query Frame = -1 Query: 716 KEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQEYESSKFSP--EITQELLDLLCF-GIR-------------------LNNNYLETQPEEFYFSNDVYSEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEMRSIYPDSFPNTKTCN------LLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINTRSRTA-GLIENLYTEMRYLNIEPTLGTFCLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEV-----------HTKDDLLLFRYAMQSLNESRSDELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRINGKAFK 2110 +EI IP + D ++L+ L+ V + ++ Y D+P L+ S+ R Y LSK SGR +A+ + + EP I LMP E + +V+ + E+AL+ I L + E+ + + +P E T +LLDL+ F G R + +P ++ ++++ W +N AE +F + ++ ++ ++I G +K + ++A FN IY D N T + L+L + + ++ + +++++L M V P++ TFN+ + ++ A GL EM+ LNIEP+L T+ NH V LS R + I EV DD+ F AM+ + + ELA +L+ + ++G+ + Y+ FN+ + + +D ++K + ++P+L+ LL + + L+P+I I+ G + K Sbjct: 58 EEIDIPRRKSWDKTAVLQALAYTVSHDPTAAHYMFQDEPFLAPKTSSEF-RLYSLSKESGRNAAKYIIGTYP-NLFQNDVAEPHIPCLMP----ENLQPQVEGVS---EEALKERIQLRRVKESVDLFDQLLQGGTAPSLETTNKLLDLISFYGDREPVRDIQTSEQEQQEVQDQQETEDPKKRPRQYRKASEILGSWRENNNAERIFNLMPERNAHSFCTLIQGMAKYGSSSKA---FN----IYTDLMNNRLTADVQTFNALILAAPDIKEKYNEKW--DLIVELLKHMVQQNVRPNLLTFNSVLKSLRKCGPMAKGLALQTINEMKALNIEPSLATY-----------NHLLGVF-YKGALSPRGQTEILSEVLDEIEGRSFTLRDPDDVYFFTNAMRVCLDLKDIELAYRLHTLQQTADNRGLMGDFYLQSTYYGRFFNL-LCMMESIDIILKWYRELIPSLYYPNSRGMLDLLQALDMDNRLDLIPQIWKDIKQIGHSNK 531
BLAST of SMED30000573 vs. Ensembl Xenopus
Match: ptcd3 (pentatricopeptide repeat domain 3 [Source:NCBI gene;Acc:548397]) HSP 1 Score: 84.7297 bits (208), Expect = 2.401e-16 Identity = 118/505 (23.37%), Postives = 219/505 (43.37%), Query Frame = -1 Query: 716 KEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQEYESSKFSP--EITQELLDLLCF-GIR-------------------LNNNYLETQPEEFYFSNDVYSEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEMRSIYPDSFPNTKTCN------LLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINTRSRTA-GLIENLYTEMRYLNIEPTLGTFCLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEV-----------HTKDDLLLFRYAMQSLNESRSDELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRINGKAFK 2110 +EI IP + D ++L+ L+ V + ++ Y D+P L+ S+ R Y LSK SGR +A+ + + EP I LMP E + +V+ + E+AL+ I L + E+ + + +P E T +LLDL+ F G R + +P ++ ++++ W +N AE +F + ++ ++ ++I G +K + ++A FN IY D N T + L+L + + ++ + +++++L M V P++ TFN+ + ++ A GL EM+ LNIEP+L T+ NH V LS R + I EV DD+ F AM+ + + ELA +L+ + ++G+ + Y+ FN+ + + +D ++K + ++P+L+ LL + + L+P+I I+ G + K Sbjct: 58 EEIDIPRRKSWDKTAVLQALAYTVSHDPTAAHYMFQDEPFLAPKTSSEF-RLYSLSKESGRNAAKYIIGTYP-NLFQNDVAEPHIPCLMP----ENLQPQVEGVS---EEALKERIQLRRVKESVDLFDQLLQGGTAPSLETTNKLLDLISFYGDREPVRDIQTSEQEQQEVQDQQETEDPKKRPRQYRKASEILGSWRENNNAERIFNLMPERNAHSFCTLIQGMAKYGSSSKA---FN----IYTDLMNNRLTADVQTFNALILAAPDIKEKYNEKW--DLIVELLKHMVQQNVRPNLLTFNSVLKSLRKCGPMAKGLALQTINEMKALNIEPSLATY-----------NHLLGVF-YKGALSPRGQTEILSEVLDEIEGRSFTLRDPDDVYFFTNAMRVCLDLKDIELAYRLHTLQQTADNRGLMGDFYLQSTYYGRFFNL-LCMMESIDIILKWYRELIPSLYYPNSRGMLDLLQALDMDNRLDLIPQIWKDIKQIGHSNK 531
BLAST of SMED30000573 vs. Ensembl Xenopus
Match: ptcd3 (pentatricopeptide repeat domain 3 [Source:NCBI gene;Acc:548397]) HSP 1 Score: 70.4774 bits (171), Expect = 5.707e-12 Identity = 109/484 (22.52%), Postives = 206/484 (42.56%), Query Frame = -1 Query: 716 RDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQEYESSKFSP--EITQELLDLLCF-GIR-------------------LNNNYLETQPEEFYFSNDVYSEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEMRSIYPDSFPNTKTCN------LLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINTRSRTA-GLIENLYTEMRYLNIEPTLGTFCLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEVHTKDDLLLFRYAMQSLNESRSDELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRINGKAFK 2080 +D ++L+ L+ V + ++ Y D+P L+ S+ R Y LSK SGR +A+ + + EP I LMP E + +V+ + E+AL+ I L + E+ + + +P E T +LLDL+ F G R + +P ++ ++++ W +N AE +F + ++ ++ ++I G +K + ++A FN IY D N T + L+L + + ++ + +++++L M V P++ TFN+ + ++ A GL EM+ LNIEP+L T+ NH V LS R + I E D+ ELA +L+ + ++G+ + Y+ FN+ + + +D ++K + ++P+L+ LL + + L+P+I I+ G + K Sbjct: 34 KDKTAVLQALAYTVSHDPTAAHYMFQDEPFLAPKTSSEF-RLYSLSKESGRNAAKYIIGTYP-NLFQNDVAEPHIPCLMP----ENLQPQVEGVS---EEALKERIQLRRVKESVDLFDQLLQGGTAPSLETTNKLLDLISFYGDREPVRDIQTSEQEQQEVQDQQETEDPKKRPRQYRKASEILGSWRENNNAERIFNLMPERNAHSFCTLIQGMAKYGSSSKA---FN----IYTDLMNNRLTADVQTFNALILAAPDIKEKYNEKW--DLIVELLKHMVQQNVRPNLLTFNSVLKSLRKCGPMAKGLALQTINEMKALNIEPSLATY-----------NHLLGVF-YKGALSPRGQTEILSECLDLKDI----------------ELAYRLHTLQQTADNRGLMGDFYLQSTYYGRFFNL-LCMMESIDIILKWYRELIPSLYYPNSRGMLDLLQALDMDNRLDLIPQIWKDIKQIGHSNK 470
BLAST of SMED30000573 vs. Ensembl Mouse
Match: Ptcd3 (pentatricopeptide repeat domain 3 [Source:MGI Symbol;Acc:MGI:1917206]) HSP 1 Score: 87.8113 bits (216), Expect = 1.850e-17 Identity = 125/488 (25.61%), Postives = 211/488 (43.24%), Query Frame = -1 Query: 752 KEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLK-IAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQEYES-SKFSPEITQELLDLLCFGIRLNNNYLETQPEEFY-FSNDVY-------------------SEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEM--RSIYPDSFPNTKTCNLLLRSLESFSCNDDSFLIKI--LMKILTGMSFYQVAPDVFTFNNAIYAINTRSRTAGLIENLYT--EMRYLNIEPTLGTFCLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEVHTK-------DDLLLFRYAMQSLNESRSDELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEI 2110 +EI IP K D +++L+ L++ V + ++ Y DDP L S SR +LL+K SG T+A+ F K IA EP I LMP E +E V A LR + + +F Q ++ + S E T LLDLLC+ Y + +P Y F + W N AE +F + K+ +Y +MI G K R +A+ ++ E+ + D + T N L+ + ++F N + F K ++ +L M +V P++ TFN + + + + G I L EM+++ IEP+L T+ I R A + LI +I E+ + DD F+ AM + R ELA +++ + G ++G++ Y+ F++ I + +D +K K ++P++F + LL + + L+P+I Sbjct: 56 EEIVIPKKKTWDKVAVLQALASTVNRDPTAAPYVFHDDPYL-IPTSALESRSFLLAKKSGETAAKFIINSYPKYFQKDIA--EPHIPCLMPEY-FEPQIEDVSEAALEERIRLRKVRASVD-----MFDQLLQAGTTVSLETTNSLLDLLCY-------YGDQEPPADYPFQQTEHLENLEEAAEENNQTSKMESGPWKAQNNAERIFALMPEKNARSYCTMIRGMVKHRAYAQALNVYTELLNNRLSADVY----TFNALIEA-KTFILN-EKFEEKWNDILDLLKHMVAQKVKPNLQTFNTILKGLR-KCYSLGRIPALQILREMKHIGIEPSLATYHHIIHLFYPRDLSAIKMPSLIIY-------DIMNELEGRTFSPQDLDDGRFFQLAMSVCSSLRDLELAYQVHRLLNTGDNRKLVGHDPLRKVYYSKFFSL-ICSLEQIDVTLKWYKDLIPSVFLPHYQIFIGLLQALDVANRLELVPQI 512
BLAST of SMED30000573 vs. Ensembl Mouse
Match: Ptcd3 (pentatricopeptide repeat domain 3 [Source:MGI Symbol;Acc:MGI:1917206]) HSP 1 Score: 55.0694 bits (131), Expect = 1.148e-7 Identity = 66/229 (28.82%), Postives = 95/229 (41.48%), Query Frame = -1 Query: 1490 KEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFED-KKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQEYES-SKFSPEITQELLDLLCFGIRLNNNYLETQPEEFY--------------------FSNDVYSEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKA 2110 +EI IP K D +++L+ L++ V + ++ Y DDP L S SR +LL+K SG T+A+ KY IA EP I LMP E +E V A LR + + +F Q ++ + S E T LLDLLC+ Y + +P Y S W N AE +F + K+ +Y +MI G K Sbjct: 56 EEIVIPKKKTWDKVAVLQALASTVNRDPTAAPYVFHDDPYL-IPTSALESRSFLLAKKSGETAAKFIINSYPKYFQKDIA--EPHIPCLMPEY-FEPQIEDVSEAALEERIRLRKVRASVD-----MFDQLLQAGTTVSLETTNSLLDLLCY-------YGDQEPPADYPFQQTEHLENLEEAAEENNQTSKMESGPWKAQNNAERIFALMPEKNARSYCTMIRGMVKG 268
BLAST of SMED30000573 vs. UniProt/SwissProt
Match: sp|A1Z9A8|PTCD3_DROME (Protein PTCD3 homolog, mitochondrial OS=Drosophila melanogaster OX=7227 GN=CG4679 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.037e-23 Identity = 125/501 (24.95%), Postives = 232/501 (46.31%), Query Frame = -1 Query: 710 STCHYSLSVSNFHIPKEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEE--IVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQ--EYESSKFSPEITQELLDLLCFGIRLNNNYLETQPEEFYFSNDVYSE-----WNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEM--RSIYPDSFPNTKTCNLLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINT-----RSRTAGLIENLYTEMRYLNIEPTLGT--FCLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEVHTKDDLLLFRYAMQSLNESRSDE-LALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRINGKAFKES 2155 S HY+ + P I+IPN+I R +L+ L++ V + ++P Y DDP L +SN++ R Y +SK SGR +A+ E+ + F+ + +P I+ P + + E +V+ E +L +I+ + +A L Y E + + SPE+ Q LL+L+CF E E ++ N+ E W + AE L+ ++ K+ +Y S+I G +K RA L E + + D T T N ++ + SF + ++ +L MS ++ P++ T N + I+T +R A L E + L + P+LG+ + LI CR R + +++D++ +S + F+ H K D F AM D+ LA K++E+ G ++G++F Y+++ + + +T+ + M + +VPN++ P + +L + + +P + + + +ES Sbjct: 22 SGAHYTTAAPAEDAP--IEIPNRIERSPTDLLQALASTVARDYTAPHYKYHDDPFL-IPMSNAAKRTYAMSKESGRKAAKWIKEEHRELFMH-QEAQPAIEKFAPSMVYTEDSVVD---------ETSLAQLISQGELKDAVLVYNLLEQKGNPISPELKQSLLELVCFHNNQEPIPEEYIEERWFLQNNKRRERSGKTWKDGDLAEKLYSEIEPKTPQSYASLIRGMAKYLQCERAYALLQEAGEKQVQLD----TNTFNSVIE-IVSFLKDTAEQRWQLCKDLLNEMSQQKLRPNLGTLNAVLQCISTFGNFKVARAAAL--QALPEFKQLGVNPSLGSYYYLLIIFCRE-RGPVSHVIVDILNDISGKE----FQIQHPK-DTYFFATAMDVCRNHLHDKSLAKKVDELLHTGKNYDLVGDSFKESIYYRNYLAL-LCQTESTEDFMLSYDLLVPNIYIPEPGIMEEILRAIEINGAVEYVPRLWSDMVVFDHTHRES 495
BLAST of SMED30000573 vs. UniProt/SwissProt
Match: sp|Q32N55|PTCD3_XENLA (Pentatricopeptide repeat domain-containing protein 3, mitochondrial OS=Xenopus laevis OX=8355 GN=ptcd3 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 6.369e-19 Identity = 130/532 (24.44%), Postives = 229/532 (43.05%), Query Frame = -1 Query: 716 TMFRKHLGKFLSTCHYSLSVSNFHIPKEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLK-IAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQEYESSKFSP--EITQELLDLLCF-GIRLNNNYLET-------------------QPEEFYFSNDVYSEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEMRSIYPDSFPNTKTCN------LLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINTRSRTA-GLIENLYTEMRYLNIEPTLGTFCLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEV-----------HTKDDLLLFRYAMQSLNESRSDELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRINGKAFK 2188 T+ R G S H + + S+ +EI IP + D ++L+ L+ V + ++ Y DDP L S+ R Y LSK SGR +A+ F IA EP I LMP + + +E V E+AL+ I L + E+ + + +P E T LLDL+CF G R ++T +P ++ ++++ W +N AE +F + ++ ++ ++I G K + +A FN Y D N T + L+L + + ++ + +++++L M V P++ TFN+ + ++ A GL EM+ LNIEP+LGT+ NH V LS R + I EV DD+ F AM+ + + ELA +L+ + ++G+ + Y+ FN+ + +++D ++K + ++P+L+ LL + + L+P+I I+ G + K Sbjct: 16 TLLRYFCG---SARHQAAAASH----EEIDIPRRKSWDKTAVLQALAYTVSHDPTAAHYMFQDDPFLVPKTSSEF-RLYSLSKESGRNAAKYIIGTHPKLFQNDIA--EPHIPCLMPE-NFQPQIEGVS------EEALKERIQLRRIKESIDLFDQLLQGGTAPSLETTNRLLDLICFYGDREPTRDIQTSEQNQQDDQDQQETEDSKKRPGQYRKASEILGSWRENNNAERIFNLMPERNAHSFCTLIQGMVKYGSSNKA---FN----TYTDLMNNRLTADVQTFNALILAAPDMKEKYNEKW--DLIVELLKHMVQQNVRPNLLTFNSVLKSLRKCGTMARGLALQTINEMKALNIEPSLGTY-----------NHLLGVF-YKGALSPRGQTEILSEVLDEIEGRSFTLRDPDDVYFFTNAMRVCLDLKDIELAYRLHALQQTADNRGLMGDFYLQSTYYGRFFNL-LCMMENIDVILKWYRELIPSLYYPNSRGMLDLLQALDMDNCLDLIPQIWKDIKQIGHSNK 508
BLAST of SMED30000573 vs. UniProt/SwissProt
Match: sp|Q14C51|PTCD3_MOUSE (Pentatricopeptide repeat domain-containing protein 3, mitochondrial OS=Mus musculus OX=10090 GN=Ptcd3 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 1.294e-16 Identity = 125/488 (25.61%), Postives = 211/488 (43.24%), Query Frame = -1 Query: 752 KEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLK-IAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQEYES-SKFSPEITQELLDLLCFGIRLNNNYLETQPEEFY-FSNDVY-------------------SEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEM--RSIYPDSFPNTKTCNLLLRSLESFSCNDDSFLIKI--LMKILTGMSFYQVAPDVFTFNNAIYAINTRSRTAGLIENLYT--EMRYLNIEPTLGTFCLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEVHTK-------DDLLLFRYAMQSLNESRSDELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEI 2110 +EI IP K D +++L+ L++ V + ++ Y DDP L S SR +LL+K SG T+A+ F K IA EP I LMP E +E V A LR + + +F Q ++ + S E T LLDLLC+ Y + +P Y F + W N AE +F + K+ +Y +MI G K R +A+ ++ E+ + D + T N L+ + ++F N + F K ++ +L M +V P++ TFN + + + + G I L EM+++ IEP+L T+ I R A + LI +I E+ + DD F+ AM + R ELA +++ + G ++G++ Y+ F++ I + +D +K K ++P++F + LL + + L+P+I Sbjct: 56 EEIVIPKKKTWDKVAVLQALASTVNRDPTAAPYVFHDDPYL-IPTSALESRSFLLAKKSGETAAKFIINSYPKYFQKDIA--EPHIPCLMPEY-FEPQIEDVSEAALEERIRLRKVRASVD-----MFDQLLQAGTTVSLETTNSLLDLLCY-------YGDQEPPADYPFQQTEHLENLEEAAEENNQTSKMESGPWKAQNNAERIFALMPEKNARSYCTMIRGMVKHRAYAQALNVYTELLNNRLSADVY----TFNALIEA-KTFILN-EKFEEKWNDILDLLKHMVAQKVKPNLQTFNTILKGLR-KCYSLGRIPALQILREMKHIGIEPSLATYHHIIHLFYPRDLSAIKMPSLIIY-------DIMNELEGRTFSPQDLDDGRFFQLAMSVCSSLRDLELAYQVHRLLNTGDNRKLVGHDPLRKVYYSKFFSL-ICSLEQIDVTLKWYKDLIPSVFLPHYQIFIGLLQALDVANRLELVPQI 512
BLAST of SMED30000573 vs. UniProt/SwissProt
Match: sp|Q0IHP3|PTCD3_XENTR (Pentatricopeptide repeat-containing protein 3, mitochondrial OS=Xenopus tropicalis OX=8364 GN=ptcd3 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.173e-15 Identity = 118/505 (23.37%), Postives = 219/505 (43.37%), Query Frame = -1 Query: 716 KEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQEYESSKFSP--EITQELLDLLCF-GIR-------------------LNNNYLETQPEEFYFSNDVYSEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEMRSIYPDSFPNTKTCN------LLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINTRSRTA-GLIENLYTEMRYLNIEPTLGTFCLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEV-----------HTKDDLLLFRYAMQSLNESRSDELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRINGKAFK 2110 +EI IP + D ++L+ L+ V + ++ Y D+P L+ S+ R Y LSK SGR +A+ + + EP I LMP E + +V+ + E+AL+ I L + E+ + + +P E T +LLDL+ F G R + +P ++ ++++ W +N AE +F + ++ ++ ++I G +K + ++A FN IY D N T + L+L + + ++ + +++++L M V P++ TFN+ + ++ A GL EM+ LNIEP+L T+ NH V LS R + I EV DD+ F AM+ + + ELA +L+ + ++G+ + Y+ FN+ + + +D ++K + ++P+L+ LL + + L+P+I I+ G + K Sbjct: 35 EEIDIPRRKSWDKTAVLQALAYTVSHDPTAAHYMFQDEPFLAPKTSSEF-RLYSLSKESGRNAAKYIIGTYP-NLFQNDVAEPHIPCLMP----ENLQPQVEGVS---EEALKERIQLRRVKESVDLFDQLLQGGTAPSLETTNKLLDLISFYGDREPVRDIQTSEQEQQEVQDQQETEDPKKRPRQYRKASEILGSWRENNNAERIFNLMPERNAHSFCTLIQGMAKFGSSSKA---FN----IYTDLMNNRLTADVQTFNALILAAPDIKEKYNEKW--DLIVELLKHMVQQNVRPNLLTFNSVLKSLRKCGPMAKGLALQTINEMKALNIEPSLATY-----------NHLLGVF-YKGALSPRGQTEILSEVLDEIEGRSFTLRDPDDVYFFTNAMRVCLDLKDIELAYRLHTLQQTADNRGLMGDFYLQSTYYGRFFNL-LCMMESIDIILKWYRELIPSLYYPNSRGMLDLLQALDMDNRLDLIPQIWKDIKQIGHSNK 508
BLAST of SMED30000573 vs. UniProt/SwissProt
Match: sp|Q96EY7|PTCD3_HUMAN (Pentatricopeptide repeat domain-containing protein 3, mitochondrial OS=Homo sapiens OX=9606 GN=PTCD3 PE=1 SV=3) HSP 1 Score: 83.1889 bits (204), Expect = 4.057e-15 Identity = 125/505 (24.75%), Postives = 221/505 (43.76%), Query Frame = -1 Query: 716 KEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFED-KKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQE--YESSKFSPEITQELLDLLCFGIRLNNNYLETQPE-EFYFSNDVYSE---------------------WNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEM--RSIYPDSFPNTKTCNLLLRSLESFSCN-DDSFLIKI--LMKILTGMSFYQVAPDVFTFNNAIYAI---NTRSRTAGLIENLYTEMRYLNIEPTLGTFCLIF----QCRNFRKNHAAMVIDLITILSQRR---KDNIFEEVHTKDDLLLFRYAMQSLNESRSDELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRINGKAFK 2110 +E+ IP K D +++L+ L++ V ++++ Y DDP L S+ SR +LL+K SG A+ KY IA EP I LMP E ++K + E AL+ I L K + + + + S E T LLDLLC+ Y + +P +++F SE W N AE +F + K++ +Y +MI G K R +A+ L+ E+ ++ D + T N L +E+ C ++ F K ++++L M +V P++ TFN + + + +R+ L + EM+ + IEP+L T+ I Q + K + ++ D++ L +R KD DD F+ AM + R ELA +++ + G IG + Y+ F++ I + +D +K + ++P+ + LL + + ++P+I + G F+ Sbjct: 55 EEVVIPKKKTWDKVAVLQALASTVNRDTTAVPYVFQDDPYL-MPASSLESRSFLLAKKSGENVAKFIINSYPKYFQKDIA--EPHIPCLMP----EYFEPQIKDIS---EAALKERIELRKVKASVDMFDQLLQAGTTVSLETTNSLLDLLCY-------YGDQEPSTDYHFQQTGQSEALEEENDETSRRKAGHQFGVTWRAKNNAERIFSLMPEKNEHSYCTMIRGMVKHRAYEQALNLYTELLNNRLHADVY----TFNAL---IEATVCAINEKFEEKWSKILELLRHMVAQKVKPNLQTFNTILKCLRRFHVFARSPAL--QVLREMKAIGIEPSLATYHHIIRLFDQPGDPLKRSSFIIYDIMNELMGKRFSPKD--------PDDDKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYSKFFDL-ICLMEQIDVTLKWYEDLIPSAYFPHSQTMIHLLQALDVANRLEVIPKIWKDSKEYGHTFR 524
BLAST of SMED30000573 vs. TrEMBL
Match: A0A2L2YIN6 (PPR_long domain-containing protein (Fragment) OS=Parasteatoda tepidariorum OX=114398 PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 6.424e-32 Identity = 142/570 (24.91%), Postives = 261/570 (45.79%), Query Frame = -1 Query: 467 KEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEE---IVEKVKSGA---FHPEKALRLIINLLKPTEAWLFYQEYESSKFSPEITQELLDLLCFGIRLNNNYLETQPEEFY-------FSNDVYSEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEMRSIYPDSFPNTKTCNLLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINTRSR---TAGLIENLYTEMRYLNIEPTLGTFCLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEVHTKDDLLLFRYAMQSLNESRSD-ELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRINGKAFKESNIISNIIQATAMVFDQSLTTPVAKEESDHELRPKMIKSINRIFNTVFYEE-----PENLTNPKFISNLLNLIDKLRDLELKWKFIR 2110 K+I +P KI R ILK L++ + + ++ Y DDP + + + R + LSK SG+ +A+ F +K + K P IK P +++ E + E + F + ++ I N+LK + S ++ Q+LLDLLCF N + P+++Y +WN + AE LF S++ K AY SMI G SK RA+ L +EM+S T+ N L+ D S ++ M++L+ M+ V PD++T N + ++ SR + L N+ EM+ L IEP+LGT+ + + + + I ++ K + D+L F AM+ +S +D +LA +L+++ ++GN YF+ F + ++ET+D+D M+ ++ +PN +T P + S++ V Y+ LP++ + + + + +NI+ +++A A +++ ++ +I+ + IF+ + P T P +SN+L +D+E W ++ Sbjct: 2 KDIVVPYKIERSPTDILKALNSTISKDHTAAHYKYEDDPYFIPASNVTK-RSFALSKESGKKAARY-FLEKYPELFKCNTSIPHIKAFDPPLTYTESDNVTETLLKDCILNFEVQNSID-IFNILKK----------KGIDVSKDVKQDLLDLLCF-----YNNIPPPPDDYYEERYFQRIDEATKQKWNANGMAEKLFDSMEKDGK-AYSSMIAGLSKYGEVERALFLHDEMKS--KGLIGTTQAYNSLISECHHLH-EDSSSCWEMAMRLLSQMNADGVNPDLYTMNGLLRILSKGSRWRKSRQLSLNVIGEMKRLKIEPSLGTYYYLLMVYGSDADAGVLYEIMGDIQNKEHK------IRHPSDVLFFATAMEVCWKSLADKDLAYRLHKLLEYKNNCKLLGNALAESHYFKCFFRL-LSETEDIDIFMELYEKFIPNSYTPEPIVTLSVIEAVHFVGAYKYLPKLCSDVLLFEQT-ERTNILEALLEAAACT------------KNEENIQKPLIEMVWNIFDNLITRSKGRRLPFEWTGP-MLSNILKTFMNGKDMEKSWPILQ 528
BLAST of SMED30000573 vs. TrEMBL
Match: A0A4Y2BPM7 (Protein PTCD3, mitochondrial OS=Araneus ventricosus OX=182803 GN=CG4679_1 PE=4 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.501e-29 Identity = 140/518 (27.03%), Postives = 242/518 (46.72%), Query Frame = -1 Query: 671 TMFRKHLGKFLSTCHYSLSVSNFHIPKEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQ--EYESSKFSPEITQELLDLLCF---GIRLNNNYLETQPEEFYFSNDVYSE--WNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEMRSIYPDSFPNTKTCNLLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYA-INTRSRTAGLIE-NLYTEMRYLNIEPTLGTFCLIFQ--CRNFRKNHAAMVIDLITILSQRRKDNIFEEVHTKDDLLLFRYAMQ-SLNESRSDELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRINGKAFKESNIISNIIQATAMV 2188 T KH + +T S+ V P EI IP +I R +LK L++ + + ++P Y DDP SN + R + LSK SGR +A+ E+ + K K P IK P I + E E V S ++LR I + L Y + + S ++ Q+LL+LLCF +++ Y E E F+ D E W+ AE LF+ ++ S+ AY +MI G++K R+ RA+ LF EM+ P T L S+ S + ++L M+ + P+++T N + + + R R + ++ EMR L IEP++GT+ L+ C N N A ++ D++ L + E+ D+ F AM+ L R EL ++ + ++GN+F +YF+ F + + +T+++D LM ++ VPN +T P + +++ + Y+ LP++ + + +E NI++ ++ A + Sbjct: 16 TFLFKHSVYYCTTT--SVQVKPETAPNEIVIPYRIERGPTDVLKALASTLSKDYTAPLYKYEDDPYF-IPSSNITKRSFALSKESGRKAARYFLENYP-ELFKCNKSVPHIKAFDPPIVYTE--ENVTSA-----ESLRDCIMDCHVDNSILVYNILKTKGIAVSEDLKQDLLELLCFYNCKQPVSDEYYE---ERFFARTDKGPEDKWDCKGMAEELFKEMEQGSQ-AYGAMISGAAKFRDADRALSLFAEMKD---KGLPGTVEVYNSLISISSLIQEAPQLRFDYVQQLLGNMTSDGLQPNLYTMNAILESFVQGRWRKSMPYSLSVLAEMRRLKIEPSVGTYYLLLMIFCSNDFSN-ATVLYDIMNQLGGKEL-----EIRHPTDVYFFNTAMEVCLKSLRDKELGYCIHNLLEFKNNCKLLGNSFSESQYFKFFFKL-LCQTEEMDKLMDIYEKYVPNSYTPEPSVTLAIIEAIHFSGNYKHLPKMCSDVLFFEQTERE-NILTALMDAAGCM 507
BLAST of SMED30000573 vs. TrEMBL
Match: A0A3R7M0A7 (PTCD3-like protein, mitochondrial OS=Penaeus vannamei OX=6689 GN=C7M84_012327 PE=4 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.213e-27 Identity = 135/500 (27.00%), Postives = 231/500 (46.20%), Query Frame = -1 Query: 740 KHLGKFLSTCHYSLSV-----SNFHIPKEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQ--EYESSKFSPEITQELLDLLCFGIRLNNNYLETQPEEFYFSNDVYSE------WNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEMRSIYPDSFP-NTKTCNLLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYA---INTRSRTAGLIENLYTEMRYLNIEPTLGT--FCLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEVHTKDDLLLFRYAMQSL-NESRSDELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEIL-DLI 2176 +HL + +C S V S+ + +EI IPN+I R + IL+ L++ V +SS P Y DDP L SN + R + LSK SGR +A+ DK D E+P I+ P IS + + E LR ++ ++A YQ + + + S + QELL+ L + + E EE ++ + S W AE LF+SL + AY ++I G ++ RA +++ E P +T+T N L+R + S K++ +ILT MS V P++ T N+ + + I + +T L + E L I+ +L + F LI CR R + ++ID++ ++ D F + D F AM N S ELA +++++ G +IG+++ Y++ F ++ + T +D M+ +VP+++T P + LL + + + LP++ D+I Sbjct: 11 RHLQRLFGSCSISAPVRSVRTSSCNRAEEIVIPNRIPRSSTDILEALASTVGRDSSGPHYKYSDDPYL-TPASNVAKRSFSLSKESGRKAARW-IRDKHSDLFTHRPEDPFIEAFYPKISFTDESDV-------SEDTLRELMQKCMVSDAIQVYQICKTKGVELSDSVRQELLEFLGY-YNCEDALDEDWVEERWYRQGIMSRDRIRNTWKDHGLAEELFKSLSHQGSPAYCALIRGMTRYYQVDRAWQMYQE---TLEKGIPLDTETYNSLIR-VASLMREGSDLRWKLVKEILTAMSEAGVRPNLGTLNSTLESLSQIASWRQTKNLSLQVMAEFNRLGIQASLASYYFLLIIHCRE-RGPISHILIDIMNHIA----DKEF-SIQDPKDTFFFVTAMDVCRNHLHSKELAKRVDDLLHTGNNYMLIGDSYKESIYYRHYFALSCS-TDTVDQFMELYNELVPHIYTPEPGVMEELLKALKVHEALEYLPQLWSDMI 489
BLAST of SMED30000573 vs. TrEMBL
Match: T1J0Z3 (AA_kinase domain-containing protein OS=Strigamia maritima OX=126957 PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 5.692e-27 Identity = 126/485 (25.98%), Postives = 229/485 (47.22%), Query Frame = -1 Query: 752 YSLSVSNFHIPK--EIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXS-------RKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLII--NLLKPTEAWLFYQEYESSKFSPEITQELLDLLCFGIRLNNNYLETQPEEF--YFSNDVYSEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEMRSIYPDSFPNTKTCNLLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINTRSR---TAGLIENLYTEMRYLNIEPTLGTFCLIF--QCRNFRKNHAAMVIDLITILSQRRKDNIFEEVHTKD--DLLLFRYAMQSLNESRSDE-LALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEI 2143 YS +V ++ + K +I+IP +I+R + +IL+ L+ V + ++P Y +DDP L + + R Y L+K SGR SA+ F ++ +I +PKI+ +P + +E KS E+ LR + L+K + + + + S E+ Q LL+L CF + + + E + Y D W A+ LF S++ K+ AY +MI G +K + RA L+ EMR F + T N L+ SL ++ + ++ + LT M V P++ TFN+A+ + + + L ++ EM+ L IEP+L ++ + CR ++ + L IL+Q +E +D D+L F AM + D+ +AL++N++ G ++G + Y+Q LF + L+ + ++ VPN++T P + ++ + + + +PEI Sbjct: 17 YSTNVKSYQVAKNGQIQIPKRIHRSSTAILEALAGTVSRDYTAPHYKYVDDPLLIPASNILKVPSYDRIKRSYALAKESGRKSARWIF-NQNPQLFEIVDGDPKIEAFLPQQTFDE-----KSDV--TEEILRTCVEKRLVKTSNTVYQLLQQKGLRVSAELKQSLLELFCFHNSQDPLHQDDTEERWFQYPQKDKRKTWEDGEMADQLFNSMEVKTPTAYCTMIRGLAKHLDVERAYALYQEMRE--KQMFIDVTTYNYLI-SLCNYLRDSHEMKWQLCEEFLTNMHQEGVKPNLQTFNSALEVLGRLPKWRNSKKLSLEIFGEMKQLGIEPSLASYNYLLNTHCR----DNGPISTILYDILNQIEG----KEFTIRDPRDVLFFLTAMVVCHNHLMDKNVALRINDLLNKGNNYSLLGTSIRESLYYQHLFK-CLCFADTLENFFEFYRKYVPNVYTPEPSVMLEIIQSIAVNSAWTFIPEI 481
BLAST of SMED30000573 vs. TrEMBL
Match: B3NRN5 (Uncharacterized protein OS=Drosophila erecta OX=7220 GN=Dere\GG22508 PE=4 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.747e-26 Identity = 135/517 (26.11%), Postives = 244/517 (47.20%), Query Frame = -1 Query: 710 RKHLGKFLST--CHYSLSVSNFHIPKEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEE--IVEKVKSGAFHPEKALR---LIINLLKPTEAWLFYQEYESSKFSPEITQELLDLLCFGIRLNNNYLETQPEEF-----YFSNDVYSE-----WNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEM--RSIYPDSFPNTKTCNLLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINT-----RSRTAGLIENLYTEMRYLNIEPTLGT--FCLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEVHTKDDLLLFRYAMQSLNESRSDE-LALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRINGKAFKES 2179 R ++ + LS+ HY+ + P I+IPN+I R +L+ L+ V + ++P Y DDP L +SN++ R Y +SK SGR +A+ E+ + F+ + +P I+ P + + E +V++ G + L+ L+ NLL E + + SP++ Q LL+L+CF +N E PEE+ + N+ E W + AE L+ ++ K+ +Y S+I G +K RA L E + + D T T N ++ + SF + ++ ++L MS ++ P++ T N + I+T +RTA L E + L + P+LGT + LI CR R + +++D++ +S + F+ H K D F AM D+ LA K++E+ G +IG++F Y+++ + + +T+ +D M + R+VPN++ P + +L + + +P I + + +ES Sbjct: 12 RANIARSLSSSGAHYTTAAPAEDAP--IEIPNRIERSPTDLLQALAGTVARDHTAPHYKYHDDPFL-IPMSNAAKRTYAMSKESGRKAAKWIKEEHRELFMH-QEAQPAIEKFAPSMVYTEDSVVDESSLGQLISQGELKDAVLVYNLL----------EQKGNPISPDLKQSLLELVCF-----HNNQEPLPEEYIEERWFLQNNRRRERSGKTWKDGDLAEKLYSEIEPKTPQSYASLIRGMAKYLQCERAYALLQEAGEKQVQLD----TNTFNSVI-EIVSFLKDTAEQRWQLCTELLNEMSQQKLRPNLGTLNAVLQCISTFGNLKLARTAAL--QALPEFKQLGVSPSLGTYYYLLIIFCRE-RGPVSHVIVDILNDISGKE----FQIQHPK-DTYFFATAMDVCRNHLHDKSLAKKVDELLHTGKNYDLIGDSFKESIYYRNYLAL-LCQTELIDDFMMSYDRLVPNIYIPEPGIMEEILRAIEINGGVEYVPRIWSDMVVFDHTHRES 495
BLAST of SMED30000573 vs. Ensembl Cavefish
Match: ptcd3 (pentatricopeptide repeat domain 3 [Source:NCBI gene;Acc:107196966]) HSP 1 Score: 97.8265 bits (242), Expect = 1.077e-20 Identity = 123/512 (24.02%), Postives = 228/512 (44.53%), Query Frame = -1 Query: 728 RKHLGKFLSTCHYSLS-VSNFHIPKEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQEYESSK--FSPEITQELLDLLCF------GIRLNNNYLETQPEEFYFSNDV------YSEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEMRSIYPDSFPNTKTCN------LLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINTRSRTAGLIENLYTEMRYLNIEPTLGTFCLI----FQCRNFRKNHAAM---VIDLITILSQRRKDNIFEEVHTKDDLLLFRYAMQSLNESRSDELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRING 2179 R+++G + C S + VS +EI IP K + ++L+ L+ V + ++ Y L DD L + + + LSK SGR +A+ F + + + EP I LMP EI E E AL I L K A Y + + S S ++T +LLDL+C ++Y+ E+ + S W +N AE +F + +++ +Y ++I G K ++A +++ +M N T + L+ + E + + ++++ +L M+ V P++ TF+ + + RSR + +++ EM+ L I P+L T+ LI ++ +F K H + V+D I+ S +D DD+ F AM+ E++ ELA KL+ + G ++G ++ Y+ F++ + +++D ++K K ++P+L+ T L + L+P+I I+ G Sbjct: 29 RRYVGLGSAACQQSAAEVSGS--AEEIVIPRKKTWNKETVLQALAATVNRDPTASNYVLQDDSYLIPNSYAQF-KLFTLSKESGRNTAKY-FINTYPKYFQKDFAEPHIPCLMPETLELEIEEV-------SEAALIERIQLRKVKAAVDMYDQLQQSGTPLSVDLTNDLLDLICLYGDQDPAPEQGSDYMGEDQEDVKKKEGIPQRDSGISRWRENNNAERIFHIMPERTRRSYGALIRGMVKYGAYSKAFDMYTDM-------LNNRLTADVHIFNALITAAPEVREQIQEKW--ELVLNLLKQMAKQDVKPNLLTFHAVLRCLR-RSRHLAKVFSVFNEMKALGIAPSLATYNLILGIVYKQASFAKGHTEILEKVLDEISGKSFTPQD--------PDDVKFFINAMRICQEAKDIELAYKLHSVVGVGENWKLLGESYFQNIYYWRFFSL-LCMMENIDVVLKWYKELIPSLYYPTAQGMRDFLQALDTDNRLDLIPQIWKDIKQMG 510
BLAST of SMED30000573 vs. Ensembl Medaka
Match: ptcd3 (pentatricopeptide repeat domain 3 [Source:NCBI gene;Acc:101157067]) HSP 1 Score: 88.1965 bits (217), Expect = 1.068e-17 Identity = 115/490 (23.47%), Postives = 214/490 (43.67%), Query Frame = -1 Query: 728 KEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQE--YESSKFSPEITQELLDLLCFGIRLNNNYLETQPEEFYFSNDVY---------------SEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEMRSIYPDSFPNTKTCN------LLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINTRSRTAGLIENLYT--EMRYLNIEPTLGTF----CLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEVHTKDDLLLFRYAMQSLNESRSDELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRING 2110 + I IP K + +++L+ L++ V + ++ Y DDP LS S+ + + LS+ SGR++A+ F D F EP I LMP E + +++ + E+ALR I+L K T A Y + + S E T +LLDL+C N E P+ + W +N AE +F L + Y ++I G K +A S+Y D + T + L+L + E ++ + +++ ++L MS +V PD+ TFN+ + A+ R + L T EM+ + I P+L T+ ++ + ++ ++++++T L R DD+L F AM+ + + EL K+ + G ++G+++ Y+ FN+ + + +D +++ ++++P+ + P LL + +LP I I+ G Sbjct: 51 ESIVIPRKKTWNKIAVLEALASTVDRDPTAYPYQFQDDPYLSPRTSSEF-KLFSLSQESGRSAAKF-FVDSNPKFFTKDFAEPHIPCLMP----ESVSLRLEEVS---EEALRERISLRKVTAAVDMYDQLLQAGTAVSMETTHDLLDLICLYCD-RNPVQEGGPQAEEAEEAGEETKGRRGRTRRDIPKTPWKENNNAERIFNLLPERDSRCYSALIRGMVKHGAYAKAF-------SLYTDLLNDRLTGDVHLFNALILAAPELREKYNEKW--ELISELLNQMSQQKVHPDLLTFNSVLKALR-RCGYVAKTKALSTLNEMKAVGISPSLATYDHILAAFYKSASSGPSNTEILLEVLTELEGTRL-----TCQDPDDVLFFSSAMRICLDGKDLELGYKVQNLLEVGDNWRLLGDSYQQSIYYGRFFNL-LCMMEHIDVVLEWYRKIIPSRYYPNPQGMKDLLQALDTDSRLDMLPTIWKDIKSLG 514
BLAST of SMED30000573 vs. Ensembl Medaka
Match: ptcd3 (pentatricopeptide repeat domain 3 [Source:NCBI gene;Acc:101157067]) HSP 1 Score: 88.1965 bits (217), Expect = 1.171e-17 Identity = 115/490 (23.47%), Postives = 214/490 (43.67%), Query Frame = -1 Query: 728 KEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQE--YESSKFSPEITQELLDLLCFGIRLNNNYLETQPEEFYFSNDVY---------------SEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEMRSIYPDSFPNTKTCN------LLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINTRSRTAGLIENLYT--EMRYLNIEPTLGTF----CLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEVHTKDDLLLFRYAMQSLNESRSDELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRING 2110 + I IP K + +++L+ L++ V + ++ Y DDP LS S+ + + LS+ SGR++A+ F D F EP I LMP E + +++ + E+ALR I+L K T A Y + + S E T +LLDL+C N E P+ + W +N AE +F L + Y ++I G K +A S+Y D + T + L+L + E ++ + +++ ++L MS +V PD+ TFN+ + A+ R + L T EM+ + I P+L T+ ++ + ++ ++++++T L R DD+L F AM+ + + EL K+ + G ++G+++ Y+ FN+ + + +D +++ ++++P+ + P LL + +LP I I+ G Sbjct: 51 ESIVIPRKKTWNKIAVLEALASTVDRDPTAYPYQFQDDPYLSPRTSSEF-KLFSLSQESGRSAAKF-FVDSNPKFFTKDFAEPHIPCLMP----ESVSLRLEEVS---EEALRERISLRKVTAAVDMYDQLLQAGTAVSMETTHDLLDLICLYCD-RNPVQEGGPQAEEAEEAGEETKGRRGRTRRDIPKTPWKENNNAERIFNLLPERDSRCYSALIRGMVKHGAYAKAF-------SLYTDLLNDRLTGDVHLFNALILAAPELREKYNEKW--ELISELLNQMSQQKVHPDLLTFNSVLKALR-RCGYVAKTKALSTLNEMKAVGISPSLATYDHILAAFYKSASSGPSNTEILLEVLTELEGTRL-----TCQDPDDVLFFSSAMRICLDGKDLELGYKVQNLLEVGDNWRLLGDSYQQSIYYGRFFNL-LCMMEHIDVVLEWYRKIIPSRYYPNPQGMKDLLQALDTDSRLDMLPTIWKDIKSLG 514
BLAST of SMED30000573 vs. Planmine SMEST
Match: SMESG000050316.1 (SMESG000050316.1) HSP 1 Score: 1318.91 bits (3412), Expect = 0.000e+0 Identity = 676/679 (99.56%), Postives = 677/679 (99.71%), Query Frame = -1 Query: 149 MFRKHLGKFLSTCHYSLSVSNFHIPKEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLXXXXXXXXSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQEYESSKFSPEITQELLDLLCFGIRLNNNYLETQPEEFYFSNDVYSEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEMRSIYPDSFPNTKTCNLLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINTRSRTAGLIENLYTEMRYLNIEPTLGTFCLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEVHTKDDLLLFRYAMQSLNESRSDELALKLNEITLGGGFTHIIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRINGKAFKESNIISNIIQATAMVFDQSLTTPVAKEESDHELRPKMIKSINRIFNTVFYEEPENLTNPKFISNLLNLIDKLRDLELKWKFIRFYGGFGKLFPSSIRVLIESFYRENXXXXXXXXXXXXXXXETAIGSIIDLPDEQSEFESVMKFTRNVAQSVLIENGVSIDHFSRILNQVEYSVTRGQKERLQIESIV 2185 MFRKHLGKFLSTCHYSLSVSNFHIPKEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLSHSVSNSSSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQEYESSKFSPEITQELLDLLCFGIRLNNNYLETQPEEFYFSNDVYSEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEMRSIYPDSFPNTKTCNLLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAIN RSRTAGLIENLYTEMRYLNIEPTLGTFCLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEVHTKDDLLLFRYAMQSLNE RSDELALKLNEITLGGGFTH+IGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRINGKAFKESNIISNIIQATAMVFDQSLTTPVAKEESDHELRPKMIKSINRIFNTVFYEEPENLTNPKFISNLLNLIDKLRDLELKWKFIRFYGGFGKLFPSSIRVLIESFYRENELDSLLELIEYLLENETAIGSIIDLPDEQSEFESVMKFTRNVAQSVLIENGVSIDHFSRILNQVEYSVTRGQKERLQIESIV Sbjct: 1 MFRKHLGKFLSTCHYSLSVSNFHIPKEIKIPNKIYRDNLSILKTLSNIVKVESSSPFYPLIDDPNLSHSVSNSSSRKYLLSKASGRTSAQLAFEDKKYDFLKIAKEEPKIKILMPMISHEEIVEKVKSGAFHPEKALRLIINLLKPTEAWLFYQEYESSKFSPEITQELLDLLCFGIRLNNNYLETQPEEFYFSNDVYSEWNLDNEAEMLFQSLKSKSKCAYESMIMGSSKARNPTRAIELFNEMRSIYPDSFPNTKTCNLLLRSLESFSCNDDSFLIKILMKILTGMSFYQVAPDVFTFNNAIYAINKRSRTAGLIENLYTEMRYLNIEPTLGTFCLIFQCRNFRKNHAAMVIDLITILSQRRKDNIFEEVHTKDDLLLFRYAMQSLNECRSDELALKLNEITLGGGFTHMIGNNFDTYKYFQSLFNIAINETQDLDYLMKTIKRVVPNLFTFTPFLATSLLNLVMLKKTYRLLPEILDLIRINGKAFKESNIISNIIQATAMVFDQSLTTPVAKEESDHELRPKMIKSINRIFNTVFYEEPENLTNPKFISNLLNLIDKLRDLELKWKFIRFYGGFGKLFPSSIRVLIESFYRENELDSLLELIEYLLENETAIGSIIDLPDEQSEFESVMKFTRNVAQSVLIENGVSIDHFSRILNQVEYSVTRGQKERLQIESIV 679 The following BLAST results are available for this feature:
BLAST of SMED30000573 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of SMED30000573 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of SMED30000573 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of SMED30000573 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of SMED30000573 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 3
BLAST of SMED30000573 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of SMED30000573 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30000573 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30000573 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of SMED30000573 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30000573 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30000573 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30000573 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of SMED30000573 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30000573 ID=SMED30000573|Name=SMED30000573|organism=Schmidtea mediterranea sexual|type=transcript|length=2191bpback to top protein sequence of SMED30000573-orf-1 >SMED30000573-orf-1 ID=SMED30000573-orf-1|Name=SMED30000573-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=724bp MTMFRKHLGKFLSTCHYSLSVSNFHIPKEIKIPNKIYRDNLSILKTLSNIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|