Transposon Ty3-I Gag-Pol polyprotein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30000559 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 14
Homology
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: GIN1 (gypsy retrotransposon integrase 1 [Source:HGNC Symbol;Acc:HGNC:25959]) HSP 1 Score: 97.4413 bits (241), Expect = 1.371e-19 Identity = 62/248 (25.00%), Postives = 119/248 (47.98%), Query Frame = 1 Query: 7582 REEIRKGTNQKY*ISKKLVVI-EDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNITQ 8322 R IR+ + KKL + +D +L++V ++ ++ +L + H+ G H +T + + YYW ++ DVK+W AC C KN T AP + +P L +D + T+ + + ++ +D FTKW P D +A V+K ++ I F G P+K++ D+ F+ + + +F + +I ++ T E T+ + L+ + N+WD+++S ++ N+T Sbjct: 33 RSGIRRAAKKFVFKEKKLFYVGKDRKQNRLVIVSEEEKKKVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYACQHCQVAKN--TVIVAPKQHLLKVENPWSLVTVDLMGPFHTSNRSHVYAIIMTDLFTKWIVILPLCDVSASEVSKAII-NIFFLYGPPQKIIMDQRDEFIQQINIELYRLFGIKQI-VISHTSGTVNPTESTPNTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTH 276
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: RTL1 (retrotransposon Gag like 1 [Source:HGNC Symbol;Acc:HGNC:14665]) HSP 1 Score: 97.8265 bits (242), Expect = 3.591e-19 Identity = 80/318 (25.16%), Postives = 146/318 (45.91%), Query Frame = 1 Query: 6403 EQYDKLRDTKYFTVIDANKGYMQIQMEEG----DAEKTAFVIE-DGLYEYTRLPFGLTNAPATFQRLMNTILVDVQHCAV--YMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQ-EEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVI 7332 E +D+L ++FT ++ +G + + G D K AF +E + + Y PF L+ P Q +++ IL D+ V Y +++LI S + EEHL + VL R + + K ++ + FLG +VT +G+ N + + ++ +P P + ++ F+ YR F++ ++ IA P+ + ++ Q W E Q+AF+ LK AP+L +P + F + +G A+ A L Q +++ GK + S+ + ++ YS E + I A + Y+ TE I Sbjct: 652 ELFDQLHGAEWFTKLEL-RGTIVEESVNGHRTEDVWKAAFGLELEEMKSYQ--PFALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPL---------------------VRQLLSSYQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPIRAAFMVWCRYLENTEEPI 945
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: RTL1 (retrotransposon Gag like 1 [Source:HGNC Symbol;Acc:HGNC:14665]) HSP 1 Score: 97.8265 bits (242), Expect = 3.591e-19 Identity = 80/318 (25.16%), Postives = 146/318 (45.91%), Query Frame = 1 Query: 6403 EQYDKLRDTKYFTVIDANKGYMQIQMEEG----DAEKTAFVIE-DGLYEYTRLPFGLTNAPATFQRLMNTILVDVQHCAV--YMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQ-EEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVI 7332 E +D+L ++FT ++ +G + + G D K AF +E + + Y PF L+ P Q +++ IL D+ V Y +++LI S + EEHL + VL R + + K ++ + FLG +VT +G+ N + + ++ +P P + ++ F+ YR F++ ++ IA P+ + ++ Q W E Q+AF+ LK AP+L +P + F + +G A+ A L Q +++ GK + S+ + ++ YS E + I A + Y+ TE I Sbjct: 652 ELFDQLHGAEWFTKLEL-RGTIVEESVNGHRTEDVWKAAFGLELEEMKSYQ--PFALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPL---------------------VRQLLSSYQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPIRAAFMVWCRYLENTEEPI 945
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: GIN1 (gypsy retrotransposon integrase 1 [Source:HGNC Symbol;Acc:HGNC:25959]) HSP 1 Score: 83.5741 bits (205), Expect = 9.902e-17 Identity = 50/186 (26.88%), Postives = 91/186 (48.92%), Query Frame = 1 Query: 7582 REEIRKGTNQKY*ISKKLVVI-EDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETI 8136 R IR+ + KKL + +D +L++V ++ ++ +L + H+ G H +T + + YYW ++ DVK+W AC C KN T AP + +P L +D + T+ + + ++ +D FTKW P D +A V+K ++ I F G P+K++ D+ F+ + + Sbjct: 33 RSGIRRAAKKFVFKEKKLFYVGKDRKQNRLVIVSEEEKKKVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYACQHCQVAKN--TVIVAPKQHLLKVENPWSLVTVDLMGPFHTSNRSHVYAIIMTDLFTKWIVILPLCDVSASEVSKAII-NIFFLYGPPQKIIMDQRDEFIQQKV 215
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: NYNRIN (NYN domain and retroviral integrase containing [Source:HGNC Symbol;Acc:HGNC:20165]) HSP 1 Score: 87.4261 bits (215), Expect = 5.224e-16 Identity = 46/151 (30.46%), Postives = 78/151 (51.66%), Query Frame = 1 Query: 7672 VVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIP-ATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANF 8121 VVP +LR+ L+ HD LG H +T +L +W +++ VK +C +C C R G++ K P P +T+P ++ + + + G+KH+L+ +D T+W EAFP T VA++L+ + + G P +L +G F Sbjct: 1535 VVPTQLRRDLIFSVHDIPLGAHQRPEETYKKLRLLGWWPGMQEHVKDYCRSCLFCIPRNLIGSELKVIESPWPLRSTAPWSNLQIEVVGPVTISEEGHKHVLIVADPNTRWVEAFPLKPYTHTAVAQVLLQHVFARWGVPVRLEAAQGPQF 1685 HSP 2 Score: 64.6994 bits (156), Expect = 4.420e-9 Identity = 56/205 (27.32%), Postives = 89/205 (43.41%), Query Frame = 1 Query: 6841 VPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTL------KGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVI------RTDHKPLEGLWKHKDTSSRLLKWAMKIQD 7419 +P+ + F+G +R I DY + P+ L K KP +W EH++AF LK L++A L P+ + F + + S A+ A+L Q E G+ + I Y SK L +G Q + YA+ +ALK F I T VV+ RT P E + + + L++W++ +QD Sbjct: 1087 IPSNFTALSFFMGFMDSHRDAIPDYEALVGPLHSLLK---------------------QKPDWQWDQEHEEAFLALKRALVSALCLMAPNSQLPFRLEVTVSHVALTAILHQ-EHSGRKHPIAYTSKPLLPDEESQGPQ----SGGDSPYAVAWALKHFSRCIGDTPVVLDLSYASRTTADP-EVREGRRVSKAWLIRWSLLVQD 1264
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: CR855320.1 (pep chromosome:GRCz11:1:7956030:7961696:1 gene:ENSDARG00000099359.2 transcript:ENSDART00000159655.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR855320.1) HSP 1 Score: 372.089 bits (954), Expect = 1.207e-104 Identity = 215/670 (32.09%), Postives = 347/670 (51.79%), Query Frame = 1 Query: 6322 NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEK-GKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEV--VIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVFVLVTEKPIDIQAEQNKDLEISKIREEIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKI-GTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHN 8313 +R CIDYR LN++T+K++YP P +++L+ +FT +D Y +++ GD K+AF G +EY LPFGL+NAPA FQ +N +L D+ Q VY++DILI S + +EH++ I VLQRL + + +K KC + S FLGHIV+VEG+ +P+KI+ V N+P P + + +Q FLG +YR+FI++++++AAP+ LT +K +W+S + AF +LK ++APIL PD +QF+V +DAS V A+L Q GK + Y S L A+ Y +E A+ AL++++ ++ G+ V ++ TDHK LE + K +SR +WA+ + I Y+PG N DALSR+ + +E+ ++ K + IS I EI K + V + VP+KLR ++ H + H +T+ + Q+++W L +DV+ + AC++CA K + L P+ + P ++DF+ LP + NGN IL D F+K A P + + V +F+I G P +++D+G F+S+ + + ++ +HPQ++G ER N L L V +N + W + +S Y HN Sbjct: 574 GSLRPCIDYRGLNNITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRAGDEWKSAFNTPRGHFEYCVLPFGLSNAPAVFQAFVNDVLRDMIDQFIYVYLDDILIFSHSLQEHVQHIRRVLQRLLENGLYVKAEKCVFHAQSVPFLGHIVSVEGLRMDPEKIKAVVNWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTALTS---------------------SKTPFRWSSAAEAAFSKLKGCFVSAPILITPDPSRQFVVEVDASEVGVGAILSQRSSSDGKIHPCAYYSHRLSAAESNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIKSAKRLNSRQARWALFFGRFNFTISYRPGSKNIKPDALSRLFD---------SSERTSSLEPVVPKRIVISNITWEI----ESKVRAALDGVTPPIGCPPSRLFVPEKLRSDVIRWGHSSKVACHPGVSRTSFVIKQRFWWPALARDVRDFVLACSVCAVSKTSNRPPAGLLQPLSVPSRPWSHISLDFVTGLPPS-NGNTVILTVVDRFSKAAHFVPLPKLPSARETAVAVINHVFRIHGLPTDVVSDRGPQFISKFWREFCRLLGATVSLSSGFHPQSNGQTERANQDLERTLRCLVSQNPSSWSQQLSWVEYAHN 1208
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: BX511082.1 (pep chromosome:GRCz11:9:14291932:14297132:1 gene:ENSDARG00000113678.1 transcript:ENSDART00000183119.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX511082.1) HSP 1 Score: 371.703 bits (953), Expect = 1.953e-104 Identity = 214/670 (31.94%), Postives = 348/670 (51.94%), Query Frame = 1 Query: 6322 NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEK-GKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEV--VIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVFVLVTEKPIDIQAEQNKDLEISKIREEIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKI-GTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHN 8313 +R CIDYR LN +T+K++YP P +++L+ +FT +D Y +++ EGD KTAF G +EY LPFGL+NAPA FQ L+N +L D+ Q VY++DILI S + +EH++ + VLQRL + + +K KC + S FLGHIV+VEG+ +P+K++ V ++P P + + +Q FLG +YR+FI++++++AAP+ LT +KT +W++ Q AFD+LK ++APIL PD +QF+V +DAS V A+L Q GK + Y S L A+ Y +E A+ AL++++ ++ G+ V ++ TDHK LE + K +SR +WA+ I Y+PG N DALSRI + +E+ + + L IS + EI + ++ + V + VP++LR ++ H L H +T + Q+++W + +D++ + AC++CA K + L P+ + P A+DF+ LP + NGN IL D F+K P + V +F+I G P +++D+G F+S+ + ++ ++ +HPQ++G ER N L L V +N + W + +S Y HN Sbjct: 572 GSLRPCIDYRGLNAITVKNTYPLPLMSSAFERLQGASFFTKLDLRNAYHLVRIREGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMLDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVPFLGHIVSVEGMRMDPEKVQAVVDWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTALT-SLKTPF--------------------RWSNAAQVAFDRLKSCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQRSSSDGKMHPCAYFSHRLNNAEQNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIQSAKRLNSRQARWALFFGRFDFSISYRPGSKNVKPDALSRIFDH---------SERASSPETIVPRRLFISAVTWEI----ESRVRMALEGVTPPPGCPPSRLFVPEELRSDVIRWGHSSKLACHPGVSRTLYLIKQRFWWPVMARDIRNFVLACSVCAVSKTSNRPPAGLLQPLSVPSRPWSHIALDFVTGLPPS-NGNTVILTVVDRFSKATHFIPLPKLPSARETAAAVIDHVFRIHGLPTDVVSDRGPQFISKFWREFCHLMGATVSLSSGFHPQSNGQTERANQDLERMLRCLVSQNPSSWSQQLSWVEYAHN 1206
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: BX546500.1 (pep chromosome:GRCz11:23:12926092:12931693:-1 gene:ENSDARG00000086495.3 transcript:ENSDART00000122176.3 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX546500.1) HSP 1 Score: 363.614 bits (932), Expect = 2.765e-102 Identity = 213/675 (31.56%), Postives = 348/675 (51.56%), Query Frame = 1 Query: 6322 NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEK-GKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEV--VIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVFVLVTEKPIDIQAEQNKDLEISKIREEIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAE-----AFPT*DETAKTVAKLLVAKIIFKI-GTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHN 8313 +R CIDYR LN +T+K++YP P +++L+ +FT +D Y +++ GD KTAF G +EY LPFGL+NAPA FQ L+N +L D+ Q VY++DILI S + +EH++ + VLQRL + + +K KC + S FLGHIV+VEG+ +P+KI+ V ++P P + + +Q FLG +YR+FI++++++AAP+ LT +K +W+S + AF +LK ++APIL PD +QF+V +DAS V A+L Q GK + Y S L A+ Y +E A+ AL++++ ++ G+ V ++ TDHK LE + K +SR +WA+ + I Y+PG N DALSR+ + L + P+ Q ++ +I +R N V + VP++LR ++ H + H +T + Q+++W + +DV+ + AC++CA K++ L P+ + P ++DF+ LP++ NGN +L D F+K A P+ ETA + V +F+I G P +++D+G F+S + + ++ +HPQ++G ER N L L V +N + W + +S Y HN Sbjct: 546 GSLRPCIDYRGLNSITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFLGHIVSVEGMRMDPEKIQAVVDWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTSLTS---------------------SKMPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQRSSSDGKIHPCAYFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIRSAKRLNSRQARWALFFGRFNFTISYRPGSKNIKPDALSRLFDPSDR----LSSPDPVLPQGIVVANISW-EIESRVRTALNG--------VTPPIGCPPSRLFVPEELRSDVVRWGHSSKVACHPGVSRTLFVIKQRFWWPTMARDVRDFVLACSVCAVSKSSNRPPAGLLQPLSVPSRPWSHISLDFVTGLPSS-NGNTVVLTVVDRFSKAAHFISLPKLPSARETA-----VAVIDHVFRIHGLPTDVVSDRGPQFVSRFWREFCRLLGATVSLSSGFHPQSNGQTERANQDLERTLRCLVSQNPSSWSQQLSWVEYAHN 1180
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: BX511224.1 (pep chromosome:GRCz11:2:18017000:18022765:1 gene:ENSDARG00000113243.1 transcript:ENSDART00000186877.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX511224.1) HSP 1 Score: 363.614 bits (932), Expect = 7.436e-102 Identity = 215/676 (31.80%), Postives = 347/676 (51.33%), Query Frame = 1 Query: 6322 NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEK-GKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEV--VIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVFVLVTEKPIDIQAEQNKDLEIS-KIREEIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAE-----AFPT*DETAKTVAKLLVAKIIFKI-GTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHN 8313 +R CIDYR LN +T+K++YP P +++L+ +FT +D Y + + GD KTAF G +EY LPFGL+NAPA FQ L+N +L D+ Q VY++DILI S + +EH++ + VLQRL + + +K KC + S FLGHIV+VEG+ +P+KI+ V N+P P + + +Q FLG +YR+FI +++++AAP+ LT +K +W+S + AF +LK ++APIL PD +QF+V +DAS V A+L Q GK + Y S L A+ Y +E A+ AL++++ ++ G+ V ++ TDHK LE + K +SR +WA+ + I Y+PG N DALSR+ + T P + ++ IS +I +R + V + VP++LR ++ H + H +T + Q+++W + +DV+ + AC++CA K++ L P+ + P ++DF+ LP++ NGN IL D F+K A P+ ETA + V +F+I G P +++D+G F+S+ + + ++ +HPQ++G ER N L L V +N + W + +S Y HN Sbjct: 572 GSLRPCIDYRGLNSITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVCIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHIQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFLGHIVSVEGMRMDPEKIQAVVNWPTPDSRKALQRFLGFANFYRRFIHNFSQLAAPLTSLTS---------------------SKTPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQRSASDGKVHPCAYFSHRLSSAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIKSAKRLNSRQARWALFFGRFNFTISYRPGSKNIKPDALSRLFDPSDR------TSSPDPVLPQRIVVANISWEIESRVRTALDG--------VTPPIGCPPNRLFVPEELRSDVVRWGHSSKVACHPGVSRTLFVVKQRFWWPAMARDVRDFVLACSVCAVSKSSNRPPAGLLQPLSVPSRPWSHISLDFVTGLPSS-NGNTVILTVVDRFSKAAHFISLPKLPSARETA-----VAVIDHVFRIHGLPTDVVSDRGPQFVSKFWREFCRLLGATVSLSSGFHPQSNGQTERANQDLERTLRCLVSQNPSSWSQQLSWVEYAHN 1206
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: CR925755.2 (pep chromosome:GRCz11:17:42486740:42492668:-1 gene:ENSDARG00000116402.1 transcript:ENSDART00000183946.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR925755.2) HSP 1 Score: 360.918 bits (925), Expect = 4.676e-101 Identity = 208/671 (31.00%), Postives = 342/671 (50.97%), Query Frame = 1 Query: 6322 NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEE-KGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEV--VIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVFVLVTEKPIDIQAEQNKDLEIS-KIREEIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKI-GTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHN 8313 +R CIDYR LN +T+K++YP P +++L+ +FT +D Y +++ GD KTAF G +EY LPFGL+NAPA FQ L+N +L D+ Q VY++DILI S + +EH++ + VLQRL + + +K KC + S FLGH V+VEG+ +P+KI+ V N+P P + + +Q FLG +YR+FI+++ ++AAP+ LT +K +W++ + AF +LK ++APIL PD +QF+V +D S V A+L Q GK + Y S L A+ Y +E A+ AL++++ ++ G+ V ++ TDHK LE + K +SR +WA+ + I Y+PG N DALSR+ + T P + ++ IS +I +R + V + VP+ LR ++ H + H +T + Q+++W + +DV+ + AC++CA K++ L P+ + P ++DF+ LP++ NGN +L D F+K A P + + V +F+I G P +++D+G F+S+ + + ++ +HPQ++G ER N L L V +N + W + +S Y HN Sbjct: 545 GSLRPCIDYRGLNSITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFLGHTVSVEGMRMDPEKIQAVVNWPTPDSRKALQRFLGFANFYRRFIRNFRQLAAPLTNLTS---------------------SKTPFRWSNAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDVSEVGVGAILSQRSALDGKIHPCAYFSHRLSAAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVSTDHKNLEYIKSAKRLNSRQARWALFFGRFNFSISYRPGSKNIKPDALSRLFDRSDR------TSSPDPVLPQRVFVANISWEIESRVRTALDG--------VTPPIGCPPSRLFVPEDLRSDVIWWGHSSKVACHPGVSRTLFVIKQRFWWPVMARDVRDFVLACSVCAASKSSNRPPAGLLQPLSVPSRPWSHISLDFVTGLPSS-NGNTVVLTVVDRFSKAAHFVPLPKLPSARETAVAVIDHVFRIHGLPTDVVSDRGPQFVSKFWREFCRLLGATVSLSSGFHPQSNGQTERANQDLERTLRCLVSQNPSSWSQQLSWVEYAHN 1179
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: ENSXETT00000035398.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:9869556:9871940:-1 gene:ENSXETG00000011182.1 transcript:ENSXETT00000035398.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 356.681 bits (914), Expect = 4.632e-105 Identity = 216/675 (32.00%), Postives = 335/675 (49.63%), Query Frame = 1 Query: 6328 IRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEK-GKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTE--VVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVFVLVTEKPIDIQAEQNKDLEISKIREEIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*D-ETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNITQKVGT 8334 +R CIDYR LN +T+K+ YP P E +D+L+ K F+ +D Y I++ EGD KTAF DG YEY +PFGL NAPA FQ +N I D+ + VY++DILI S+ E H + L RL++ + K KC + P FLG+I++ G +P K+ ++ +P+P + + +Q F+G YYR+FI+ ++ AP++ L + K +P W +AF LK+ I+A +LR+P+ F + +DAS A+L Q GK + Y SK A+ Y +E A+ AL++++ + G V I TDHK LE L K + R +W++ H + Y+PG N+ ADALSR F PI E+ + S+I + ++ +S+ + G + VP +LR +L Q H GH S KT L + +W ++KDV+ + ACT+CAT K + ++ LHP+P + P MDF+ +LP + GN I V D F+K A P +A +A+L + I G P ++++D+G+ F+S + + + ++AYHPQT+G ER N L L V Q+DW + + + HN + T Sbjct: 52 LRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENSLFAKLEKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKGFSSRIAPILSLIR-------------------KGGRP-NCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELLAVKLALEEWRHLLEGASHPVTIYTDHKNLEFLQSLKRQNPRQARWSLFFSRFHFVLTYRPGTKNRKADALSR--------SFSPEDRLPI----EREPIIPPSRIIASVLPQFAEQILLSQSAAPPDTPIG--MAFVPPELRLPILQQTHSSKQAGHPGSEKTLELLQRLVWWPTIRKDVRDFVAACTVCATTKASHSRPCGLLHPLPVPSRPWTHLGMDFIVELPPSC-GNTVIWVVIDRFSKMAHFVPLRKLPSAVELAQLFIQHIFRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSAYHPQTNGAAERVNQALEQFLRNHVSLCQDDWSDLLPWAEFAHNNARHSST 691
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: castor1 (cytosolic arginine sensor for mTORC1 subunit 1 [Source:Xenbase;Acc:XB-GENE-960689]) HSP 1 Score: 357.451 bits (916), Expect = 2.017e-99 Identity = 216/675 (32.00%), Postives = 335/675 (49.63%), Query Frame = 1 Query: 6328 IRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEK-GKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTE--VVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVFVLVTEKPIDIQAEQNKDLEISKIREEIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*D-ETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNITQKVGT 8334 +R CIDYR LN +T+K+ YP P E +D+L+ K F+ +D Y I++ EGD KTAF DG YEY +PFGL NAPA FQ +N I D+ + VY++DILI S+ E H + L RL++ + K KC + P FLG+I++ G +P K+ ++ +P+P + + +Q F+G YYR+FI+ ++ AP++ L + K +P W +AF LK+ I+A +LR+P+ F + +DAS A+L Q GK + Y SK A+ Y +E A+ AL++++ + G V I TDHK LE L K + R ++W++ H + Y+PG N+ ADALSR F PI E+ + S+I + ++ +S+ + G + VP +LR +L Q H GH S KT L + +W ++KDV+ + ACT+CAT K + ++ LHP+P + P MDF+ +LP + GN I V D F+K A P +A +A+L + I G P ++++D+G+ F+S + + + ++AYHPQT+G ER N L L V Q+DW + + + HN T Sbjct: 570 LRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENSLFAKLDKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKGFSSRIAPILSLIR-------------------KGGRP-NCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELLAVKLALEEWRHLLEGASHPVTIYTDHKNLEFLQSLKRQNPRQVRWSLFFSRFHFVLTYRPGTKNRKADALSR--------SFSPEDRLPI----EREPIIPPSRIIASVLPQFAEQILLSQSAAPPDTPIG--MAFVPPELRLPILQQTHSSKQAGHPGSEKTLELLQRLVWWPTIRKDVRDFVAACTVCATTKASHSRPCGLLHPLPVPSRPWTHLGMDFIVELPPSC-GNTVIWVVIDRFSKMAHFVPLRKLPSAVELAQLFIQHIFRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSAYHPQTNGAAERVNQALEQFLRNHVSLCQDDWSDLLPWAEFAHNNASHSST 1209
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: anxa6 (annexin A6 [Source:Xenbase;Acc:XB-GENE-989741]) HSP 1 Score: 341.273 bits (874), Expect = 2.356e-99 Identity = 185/521 (35.51%), Postives = 295/521 (56.62%), Query Frame = 1 Query: 5947 MCETMVLRDDSEQMVEL-SKTNNVKFYDKVKINNNYLNETQQFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIKRQIRVKRGRRNKTKFFTMGITHCTS*-------EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDVQHCA-VYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSR 7482 +C V D + L + + + D V I++ +L+ +QQ +L+ +L YS +F+ + G T +H +DTG PI+ Y + +R E+K QI F + +H + R C+DYR+LNDVT D+YP P+ E D+L + KY T +D ++GY QI + EK+AF+ GLY++T +PFG+ NAPATFQRL+N +L +Q A Y++DI + S+T+EEHL+ + V +++ A + +KP KC A +LGH V + P+P K+E + +P+P T +QV FLG +GYYRKFI +Y+ +A P+ +LT ++ S+ ++ WT E + A + LK+ L ++P+L PDF ++FI+ DAS + AVL Q G+++ + Y S+ L + Y+TIEKEC AIV+AL++ +PY+YG E + TDH PL L + + +LL+W++ +Q + I ++ G+ + NAD LSR Sbjct: 262 ICSAPVEGTDDPPIPNLIEEATSARGIDAVTISD-HLHLSQQDQLRKILRSYSPMFSANP---GRTHWAEHKVDTGTQLPIRSPAYRVAEAVRPEMKSQID------EMLAFGVITPSHSPWASPVVLVPKKDGSTRFCVDYRRLNDVTTTDAYPMPRVDELLDRLGNAKYLTTLDLSRGYWQIPLAPSAQEKSAFLTPFGLYQFTVMPFGMRNAPATFQRLVNRLLEGMQDFAQAYLDDIAVFSQTWEEHLQHLQRVFAQIQDAGLTLKPEKCHLAMAEVQYLGHRVGGGQLRPDPAKVEAICQWPIPKTQKQVLAFLGTSGYYRKFIPNYSTVAKPLTDLT----SRQRSRTIV---------------WTPECESAMNALKQALASSPVLAAPDFSRRFILQTDASNFGLGAVLSQVNTYGEEHPVAYLSRKLLPREAAYATIEKECLAIVWALQKLQPYLYGREFTVVTDHNPLSWLQRVSGDNGKLLRWSLLLQQYNFTIQHRKGKEHHNADGLSR 753 HSP 2 Score: 82.0333 bits (201), Expect = 1.418e-14 Identity = 39/109 (35.78%), Postives = 64/109 (58.72%), Query Frame = 1 Query: 7984 DYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIH 8310 DY T++ EA A TVA L+ +I ++G P ++L+D+G F S+ ++ + + I+++ YHPQT+GL ERFNGTL + L FV + DW+ Y+ + + Sbjct: 2 DYATRYPEAVALRKIDAPTVADALI-QIFSRVGFPSEILSDQGPQFTSQLLQCLWQRCGVRAIHSSPYHPQTNGLCERFNGTLKTMLRTFVESGEKDWERYLPHLLFAY 109
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: ENSXETT00000020886.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:49613601:49618752:-1 gene:ENSXETG00000011904.1 transcript:ENSXETT00000020886.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 356.681 bits (914), Expect = 3.761e-99 Identity = 216/675 (32.00%), Postives = 334/675 (49.48%), Query Frame = 1 Query: 6328 IRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEK-GKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTE--VVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVFVLVTEKPIDIQAEQNKDLEISKIREEIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*D-ETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNITQKVGT 8334 +R CIDYR LN +T+K+ YP P E +D+L+ K F+ +D Y I++ EGD KTAF DG YEY +PFGL NAPA FQ +N I D+ + VY++DILI S+ E H + L RL++ + K KC + P FLG+I++ G +P K+ ++ +P+P + + +Q F+G YYR+FI+ ++ AP++ L + K +P W +AF LK+ I+A +LR+P+ F + +DAS A+L Q GK + Y SK A+ Y +E A+ AL++++ + G V I TDHK LE L K + R +W++ H + Y+PG N+ ADALSR F PI E+ + S+I + ++ +S+ + G + VP +LR +L Q H GH S KT L + +W ++KDV+ + ACT+CAT K + ++ LHP+P + P MDF+ +LP + GN I V D F+K A P +A +A+L + I G P ++++D+G+ F+S + + + ++AYHPQT+G ER N L L V Q+DW + + + HN T Sbjct: 570 LRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENSLFAKLDKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKGFSSRIAPILSLIR-------------------KGGRP-NCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELLAVKLALEEWRHLLEGASHPVTIYTDHKNLEFLQSLKRQNPRQARWSLFFSRFHFVLTYRPGTKNRKADALSR--------SFSPEDRLPI----EREPIIPPSRIIASVLPQFAEQILLSQSAAPPDTPIG--MAFVPPELRLPILQQTHSSKQAGHPGSEKTLELLQRLVWWPTIRKDVRDFVAACTVCATTKASHSRPCGLLHPLPVPSRPWTHLGMDFIVELPPSC-GNTVIWVVIDRFSKMAHFVPLRKLPSAVELAQLFIQHIFRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSAYHPQTNGAAERVNQALEQFLRNHVSLCQDDWSDLLPWAEFAHNNASHSST 1209
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: lin54 (lin-54 DREAM MuvB core complex component [Source:Xenbase;Acc:XB-GENE-5752559]) HSP 1 Score: 356.295 bits (913), Expect = 6.513e-99 Identity = 216/675 (32.00%), Postives = 334/675 (49.48%), Query Frame = 1 Query: 6328 IRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEK-GKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTE--VVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVFVLVTEKPIDIQAEQNKDLEISKIREEIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*D-ETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNITQKVGT 8334 +R CIDYR LN +T+K+ YP P E +D+L+ K F+ +D Y I++ EGD KTAF DG YEY +PFGL NAPA FQ +N I D+ + VY++DILI S+ E H + L RL++ + K KC + P FLG+I++ G +P K+ ++ +P+P + + +Q F+G YYR+FI+ ++ AP++ L + K +P W +AF LK+ I+A +LR+P+ F + +DAS A+L Q GK + Y SK A+ Y +E A+ AL++++ + G V I TDHK LE L K + R +W++ H + Y+PG N+ ADALSR F PI E+ + S+I + ++ +S+ + G + VP +LR +L Q H GH S KT L + +W ++KDV+ + ACT+CAT K + ++ LHP+P + P MDF+ +LP + GN I V D F+K A P +A +A+L + I G P ++++D+G+ F+S + + + ++AYHPQT+G ER N L L V Q+DW + + + HN T Sbjct: 570 LRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENSLFAKLDKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKGFSSRIAPILSLIR-------------------KGGRP-NCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELLAVKLALEEWRHLLEGASHPVTIYTDHKNLEFLQSLKRQNPRQARWSLFFSRFHFVLTYRPGTKNRKADALSR--------SFSPEDRLPI----EREPIIPPSRIIASVLPQFAEQILLSQSAAPPDTPIG--MAFVPPELRLPILQQTHSSKQAGHPGSEKTLELLQRLVWWPTIRKDVRDFVAACTVCATTKASHSRPCGLLHPLPVPSRPWTHLGMDFIVELPPSC-GNTVIWVVIDRFSKMAHFVPLRKLPSAVELAQLFIQHIFRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSAYHPQTNGAAERVNQALEQFLRNHVSLCQDDWSDLLPWAEFAHNNASHSST 1209
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Gin1 (gypsy retrotransposon integrase 1 [Source:MGI Symbol;Acc:MGI:2182036]) HSP 1 Score: 96.2857 bits (238), Expect = 2.259e-19 Identity = 61/248 (24.60%), Postives = 116/248 (46.77%), Query Frame = 1 Query: 7582 REEIRKGTNQKY*ISKKLVVI-EDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNITQ 8322 R IR+ + KKL + +D +L+VV ++ ++ +L + H+ G H +T + + YYW ++ DVK+W AC C KN T AP +P +P + +D + T+ + + ++ +D FTKW P D +A ++K ++ I F G P+K++ D+ F+ + + +F +I + + E T+ + L+ + N WDE++ ++ N+T Sbjct: 33 RSGIRRAAKKFVFKEKKLFYVGKDRKQNRLVVVSEEEKKKVLRECHENGPGVHHGISRTLTLVESGYYWTSVTNDVKQWVYACQHCQVAKN--TVIVAPQQHLPMVGNPWSVVTVDLMGPFHTSNRSHVYAIIMTDLFTKWVMILPLCDVSASEISKAII-NIFFLYGPPQKIIMDQRDEFIEQINVELYRLFGAKEIVISRASGSVNP-AENTPSTIKTFLSKHCADHPNSWDEHLPALSFAFNVTH 276
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Nynrin (NYN domain and retroviral integrase containing [Source:MGI Symbol;Acc:MGI:2652872]) HSP 1 Score: 82.4185 bits (202), Expect = 1.125e-14 Identity = 43/151 (28.48%), Postives = 75/151 (49.67%), Query Frame = 1 Query: 7672 VVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIP-ATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANF 8121 VVP++LR+ L+ HD +G H T + +W ++ V+ +C +C C R G + K P P +T+P ++ + + + G+KH+L+ +D T+W EAFP T VA++L+ + + G P +L +G F Sbjct: 1478 VVPRQLRRDLIFSVHDSPIGEHQGLEDTYKTVRLLGWWPGMQDHVRDYCRSCLFCIPRNLIGGELKVIESPWPLRSTAPWSSLQIEVVGPVTVSEEGHKHVLIVADANTRWVEAFPLKPYTHVAVAQVLLQHVFARWGVPIRLEAAQGPQF 1628 HSP 2 Score: 60.4622 bits (145), Expect = 6.475e-8 Identity = 55/224 (24.55%), Postives = 91/224 (40.62%), Query Frame = 1 Query: 6781 VTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTL------KGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGL----WKHKDTS-SRLLKWAMKIQD 7419 V +G P + + +P+ + F+G +R I DY + P+ L K KP +W EH+K+F LK L+ A L P+ F + + S ++ A L Q E G+ + I Y SK L +G Q + YA+ +ALK F + VV+R + + W + S + L++W++ +QD Sbjct: 1010 VPWDGKAPCQQVLAQLAQLNIPSNFTALSFFMGFMDSHRDVISDYEDLVGPLHGLLK---------------------QKPDWQWNQEHEKSFLALKRALVCALCLSTPNPNLPFYLEVTVSQVSLTASLHQ-EHSGRKHPIAYTSKPLLPDEDSEGPQ----SGGDSPYAVAWALKHFARCVGDNPVVLRLSYASRTTVDNEAWDSRRASKAWLIRWSLLLQD 1207
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Nynrin (NYN domain and retroviral integrase containing [Source:MGI Symbol;Acc:MGI:2652872]) HSP 1 Score: 82.4185 bits (202), Expect = 1.125e-14 Identity = 43/151 (28.48%), Postives = 75/151 (49.67%), Query Frame = 1 Query: 7672 VVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIP-ATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANF 8121 VVP++LR+ L+ HD +G H T + +W ++ V+ +C +C C R G + K P P +T+P ++ + + + G+KH+L+ +D T+W EAFP T VA++L+ + + G P +L +G F Sbjct: 1478 VVPRQLRRDLIFSVHDSPIGEHQGLEDTYKTVRLLGWWPGMQDHVRDYCRSCLFCIPRNLIGGELKVIESPWPLRSTAPWSSLQIEVVGPVTVSEEGHKHVLIVADANTRWVEAFPLKPYTHVAVAQVLLQHVFARWGVPIRLEAAQGPQF 1628 HSP 2 Score: 60.4622 bits (145), Expect = 6.475e-8 Identity = 55/224 (24.55%), Postives = 91/224 (40.62%), Query Frame = 1 Query: 6781 VTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTL------KGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGL----WKHKDTS-SRLLKWAMKIQD 7419 V +G P + + +P+ + F+G +R I DY + P+ L K KP +W EH+K+F LK L+ A L P+ F + + S ++ A L Q E G+ + I Y SK L +G Q + YA+ +ALK F + VV+R + + W + S + L++W++ +QD Sbjct: 1010 VPWDGKAPCQQVLAQLAQLNIPSNFTALSFFMGFMDSHRDVISDYEDLVGPLHGLLK---------------------QKPDWQWNQEHEKSFLALKRALVCALCLSTPNPNLPFYLEVTVSQVSLTASLHQ-EHSGRKHPIAYTSKPLLPDEDSEGPQ----SGGDSPYAVAWALKHFARCVGDNPVVLRLSYASRTTVDNEAWDSRRASKAWLIRWSLLLQD 1207
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Rtl1 (retrotransposon Gaglike 1 [Source:MGI Symbol;Acc:MGI:2656842]) HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-14 Identity = 73/322 (22.67%), Postives = 139/322 (43.17%), Query Frame = 1 Query: 6403 EQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIED--------GLYEY-TRLPFGLTNAPATFQRLMNTILVDVQHCAV--YMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQ-EEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVI 7332 E +D+L +FT ++ + ++E + T ED GL++ PF + + +++ IL D+ V + ++L+ S + EEH + + VL R + I K ++ +A LG ++ +G+ N + + ++ PVP + + +Q + L YR F++++A IAAP+ + ++ W E Q+A + LK +P+L +P + F + D +G + A L Q ++E GK + S+ L ++ Y +E I A + Y+ TE I Sbjct: 912 ELFDQLHGAAWFTKLEL------LGIKESEMRHTVTHTEDTWRASFGFGLHQMRCYRPFTMNSYSDEGNNIVHFILKDILGLFVICHGREVLVYSMSQEEHSQHVRQVLVRFRYHNIYCSLDKTQFHRQTAEILGFNISPKGVKLNKNLMNLIVGCPVPGSRRCLQSVIDLVYPYRHFVENFAVIAAPL---------------------VRQLLSSEPYYWGEEEQEALESLKRAFRKSPVLYHPKPQNPFYLETDITGSFLSASLVQTDDETGKKSTCAFYSRPLSTMEVEYPRVEMRILPIRAAFMVWCRYLENTEEPI 1206
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Rtl1 (retrotransposon Gaglike 1 [Source:MGI Symbol;Acc:MGI:2656842]) HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-14 Identity = 73/322 (22.67%), Postives = 139/322 (43.17%), Query Frame = 1 Query: 6403 EQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIED--------GLYEY-TRLPFGLTNAPATFQRLMNTILVDVQHCAV--YMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQ-EEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVI 7332 E +D+L +FT ++ + ++E + T ED GL++ PF + + +++ IL D+ V + ++L+ S + EEH + + VL R + I K ++ +A LG ++ +G+ N + + ++ PVP + + +Q + L YR F++++A IAAP+ + ++ W E Q+A + LK +P+L +P + F + D +G + A L Q ++E GK + S+ L ++ Y +E I A + Y+ TE I Sbjct: 912 ELFDQLHGAAWFTKLEL------LGIKESEMRHTVTHTEDTWRASFGFGLHQMRCYRPFTMNSYSDEGNNIVHFILKDILGLFVICHGREVLVYSMSQEEHSQHVRQVLVRFRYHNIYCSLDKTQFHRQTAEILGFNISPKGVKLNKNLMNLIVGCPVPGSRRCLQSVIDLVYPYRHFVENFAVIAAPL---------------------VRQLLSSEPYYWGEEEQEALESLKRAFRKSPVLYHPKPQNPFYLETDITGSFLSASLVQTDDETGKKSTCAFYSRPLSTMEVEYPRVEMRILPIRAAFMVWCRYLENTEEPI 1206
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|P20825|POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 355.525 bits (911), Expect = 1.073e-100 Identity = 275/877 (31.36%), Postives = 438/877 (49.94%), Query Frame = 1 Query: 5785 ITKNHNIMLTDECVIPKNGII----PIRIANYERSNVKIHKGTRLGKL------FKGE----LEQTLEMCETMVLRDD------SEQMVELSKTNNVKFYDKVKINNNYLNETQQFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPI--KQRPYGIPYKLREEIKRQIRVKRG--RRNKTKFF--TMGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRI-----HELGALE--------VFVLVTEKPID--------IQAEQNKDLEISKIREEIRKGTNQKY*I----SKKLVVIEDFSGKQLIVVPQK----------------------LRQILL--------------LQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWA--EAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKR 8142 +T N I L D ++P+N I P + + +N + G +L K +K + +QT ++ + R+ + + + S ++K D + ++LN+ + FKL+ LL+++ ++ K L T+ IKHV++T + PI KQ P +++ E + Q + +G R + + + T + N+ R+ IDYRKLN++TI D YP P E KL +YFT ID KG+ QI+M+E KTAF + G YEY R+PFGL NAPATFQR MN IL + +HC VY++DI+I S + EHL I V +L A +K++ KC++ + A FLGHIVT +GI PNP K++ + ++P+PT ++++ FLGLTGYYRKFI +YA IA PM K +TK +++ + E+ +AF++LK +I PIL+ PDF+K+F++ DAS A+ AVL Q + I++ S+TL +L YS IEKE AIV+A K F+ Y+ G + +I +DH+PL L K+ ++L +W +++ + KI Y G+ N ADALSRI H A + + +TEKPI+ I++++NK +E SKI T +Y + K ++++ F + + + + +R + L LQ H+ L H +K + +++ N + ++ N C IC K TK PL P E C F+ + ++ KH + D ++K+A E T D A + +I ++G P+ L D+ F S +KR Sbjct: 55 LTSNGPITLNDLIMLPRNSIFKKTEPFYVHRFS-NNYDMLIGRKLLKNAQSVINYKNDTVTLFDQTYKLITSESERNQNLYIQRTPESIASSDQESIKKLDFSQFRLDHLNQEETFKLKGLLNKFRNLEYKEGEKLTFTNTIKHVLNTTHNSPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKK-RTKIDTQKL-------------------EYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQN-----GHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIEENHHSEATQHSAEEDNSNLIHLTEKPINYFKKQIIFIKSDKNK-VEHSKIFGN--SITTIQYDVMTLEKAKQILLDHFIHRNITIYIESDVDFEIVQRAHIEIVNTTYTKVIRSLFLLKNVGSYAEFKEIILQSHEKLL--HPGIQKMTKLFKENHFFPNSQLLIQNIINECNICNLAKTEHRNTKMPLKITPNP----EHCREKFVVDIYSS--EGKHYISCIDIYSKFATLEQIKTKDWIECRNA---LMRIFNQLGKPKLLKADRDGAFSSLALKR 891
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|P04323|POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 337.035 bits (863), Expect = 1.644e-94 Identity = 235/719 (32.68%), Postives = 368/719 (51.18%), Query Frame = 1 Query: 6049 YLNETQQFKLQTLLDEYSDVFAKHEFD-LGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIKRQIR--VKRG--RRNKTKFFT--MGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIE-LTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIH----------ELGALE---VFVLVTEKPID------IQAEQNKDLEISK--------------IREEIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLR------------------------QILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWA 8004 +LN ++ +L LL +Y D+ HE D L T+ KH I+T + P+ + Y P +E++ QI+ + +G R + + + + + + R+ IDYRKLN++T+ D +P P E KL YFT ID KG+ QI+M+ KTAF + G YEY R+PFGL NAPATFQR MN IL + +HC VY++DI++ S + +EHL+ + V ++L KA +K++ KC++ + FLGH++T +GI PNP+KIE ++ +P+PT ++++ FLGLTGYYRKFI ++A IA PM + L K +K + T N E+ AF +LK + PIL+ PDF K+F + DAS A+ AVL Q+ + ++Y S+TL ++ YSTIEKE AIV+A K F+ Y+ G I +DH+PL L++ KD +S+L +W +K+ + I Y G+ N ADALSRI + A E + +TE+P++ I ++ D++++K RE+ + + K + IE + ++I KL + L+L H+ L H +KT + YY+ N + ++ N C+IC K T P TT E C F+ + ++ KH + D ++K+A Sbjct: 164 HLNNEEKQRLCALLQKYHDI-QYHEGDKLTFTNQTKHTINTKHNLPLYSK-YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMK----------IDTTN-----------PEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQD-----GHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEETYLSEQTQHSAEEDNSDLIFITERPLNTFNRQVIFSKGPPDIKVTKYFKKHITQIFYDIMTREKAEQYLIDHFCGKKSALYIESDADFEVIQAAHKLAINTKYTKILRSTILLKNITTYAEFKELILTAHEKLL--HPGIQKTTKLFGETYYFPNSQLLIQNIINECSICNLAKTEHRNTDMPT----KTTPKPEHCREKFMIDIYSS--EGKHYVSCIDIYSKFA 846
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|Q99315|YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3) HSP 1 Score: 335.109 bits (858), Expect = 2.379e-91 Identity = 232/761 (30.49%), Postives = 360/761 (47.31%), Query Frame = 1 Query: 6148 IKHVIDT-GNARPIKQRPYGIPYKLREEIKRQIRVKRGRRNKTKFFTMGITHCTS*-----EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDVQHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDY-VITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVFVLVTEKPIDIQAEQN---------------KDL--------EISKIRE-----EIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGAL-GGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKI-GTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNIT 8319 +KH I+ AR + +PY + K +EI + ++ + KF + C+S + R+C+DYR LN TI D +P P+ ++ + + FT +D + GY QI ME D KTAFV G YEYT +PFGL NAP+TF R M D++ VY++DILI S++ EEH K + VL+RLK + +K KCK+A FLG+ + ++ I P K +++FP P T++Q Q FLG+ YYR+FI + +KIA P I I DK +WT + KA D+LK+ L +P+L + K + + DAS + AVL + + K K V+ Y SK+L+ AQ Y E E I+ AL F+ ++G +RTDH L L + + R+ +W + + Y G N ADA+SR A+ T +PID ++ ++ K+L ++S R E+ + + Y + +++ +D +VVP K + ++ YHD L GGH T +++ YYW L+ + ++ C C K+ + L P+P +MDF+ LP T N ILV D F+K A T T L+ + IF G PR + +D+ ++ + + + ++A HPQTDG ER TL L + N +W Y+ Q +++N T Sbjct: 584 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQ----KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQP------------------IQLFICDK-----SQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISR-----AVYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQD-----RLVVPIKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNST 1307
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|Q7LHG5|YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2) HSP 1 Score: 333.954 bits (855), Expect = 3.438e-91 Identity = 231/760 (30.39%), Postives = 359/760 (47.24%), Query Frame = 1 Query: 6148 IKHVIDTGNARPIKQRPYGIPYKLREEIKRQIRVKRGRRNKTKFFTMGITHCTS*-----EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDVQHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDY-VITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVFVLVTEKPIDIQAEQN---------------KDL--------EISKIRE-----EIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGAL-GGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKI-GTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNIT 8319 +KH I+ +P + P PY + E+ +++I + KF + C+S + R+C+DYR LN TI D +P P+ ++ + + FT +D + GY QI ME D KTAFV G YEYT +PFGL NAP+TF R M D++ VY++DILI S++ EEH K + VL+RLK + +K KCK+A FLG+ + ++ I P K +++FP P T++Q Q FLG+ YYR+FI + +KIA P I I DK +WT + KA ++LK L +P+L + K + + DAS + AVL + + K K V+ Y SK+L+ AQ Y E E I+ AL F+ ++G +RTDH L L + + R+ +W + + Y G N ADA+SR A+ T +PID ++ ++ K+L ++S R E+ + + Y + +++ +D +VVP K + ++ YHD L GGH T +++ YYW L+ + ++ C C K+ + L P+P +MDF+ LP T N ILV D F+K A T T L+ + IF G PR + +D+ ++ + + + ++A HPQTDG ER TL L +V N +W Y+ Q +++N T Sbjct: 610 VKHDIEI---KPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQP------------------IQLFICDK-----SQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISR-----AIYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQD-----RLVVPIKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYNST 1333
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|P0CT39|TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-6 PE=3 SV=1) HSP 1 Score: 320.857 bits (821), Expect = 1.386e-87 Identity = 217/698 (31.09%), Postives = 354/698 (50.72%), Query Frame = 1 Query: 6328 IRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDVQ--HCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGT--EVVIRTDHKPLEGLWKHKD--TSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVFVLVTEKPIDIQAEQNKDLEISKIR--EEIRKGTNQKY*ISKKLVVI---ED--------------FSGKQLIVVPQ--KLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFP-T*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVS--QCTY---IHNITQ 8322 +RM +DY+ LN + YP P ++ K++ + FT +D Y I++ +GD K AF G++EY +P+G++ APA FQ +NTIL + + H YM+DILI SK+ EH+K + +VLQ+LK A + I KC++ + F+G+ ++ +G TP + I+ V + P ++++ FLG Y RKFI +++ P+ L K K V + KWT +A + +K+ L++ P+LR+ DF K+ ++ DAS AV AVL Q+ + K Y + Y S + AQL YS +KE AI+ +LK ++ Y+ T I TDH+ L G ++ + RL +W + +QD + +I Y+PG N ADALSRI V TE PI +E N +++I ++ + +Y KL+ + ED + K I++P +L + ++ +YH+ H + +L+++ W ++K ++ + C C K+ K PL PIP + P E +MDF+ LP + +G + V D F+K A P T TA+ A++ ++I G P++++ D F S+T K A+ +N + Y PQTDG ER N T+ L + N W +++S Q +Y IH+ TQ Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLK--------KDV-------------RWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRI---------VDETE-PIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQ 1127
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A355ABF2 (Uncharacterized protein OS=Flavobacteriaceae bacterium OX=1871037 GN=DDZ39_05755 PE=4 SV=1) HSP 1 Score: 713.761 bits (1841), Expect = 0.000e+0 Identity = 370/873 (42.38%), Postives = 527/873 (60.37%), Query Frame = 1 Query: 5722 IIPVKVNVKSEDTLIFEPDKSITKNHNIMLTDECVIPKNGIIPIRIANYERSNVKIHKGTRLGKLFKGELEQTLEMCETMVLRDDSEQMVELSKTNNVKFYDKVKINNNYLNETQQFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIKRQIR-VKRGRRNKTKFFTMGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDVQHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVFVLVTEKPIDIQAEQNKDLEISKIREEI-----RKGTNQKY*ISKKLVVIEDFSG-KQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNIT 8319 ++P++++ + T+IFEP+ + + + N IP+R NY N+++ +G +G + E V+ + ++ E N F +YLN Q ++ + +YS VFA +FDLG T+IIKH I PIKQRPY Y L+ EIK+Q+ +K + + F + +R C+DYRKLN VT KD+YP P+ E DKL ++K+FT +D GY QI++ E D KTAF +GLYE+ LPFGLT APATFQR M+ IL+D H VY++DILI S F+EHL DI VLQRL+ A +KIKP KC+WA+ FLGH+V+ EGI P+P +E +KNF P ++ +Q FLG+ GYYRKFI ++AKIA+P+ +LTK ND WT +HQ++F++LK +LI P+LR+PD K FI+M DASG A+ AVLGQ++E KD+VI YAS+ LK ++ YS IEKE AIV+++KQF YI+ ++++ TD +PL+ L HKD+SSRL++W++ +Q+ I I Y+ G+ N NAD LSR+ E V +L ++ Q D + I E+ N +Y + + +++ +G K L V+P KL++ ++ +YHDG +GGHLS++KT S + +YYW NLK DVK WC C IC RK ++A L PI + ++PME AMD + LP T GNK+ILVFSDYFTKW EA D+ A+T+AK+ + IIFK G P KL+TD+G NF+SE + V F + K T+AYHPQ+DGLVERFN TL L+ + + Q DWDEY++ C + + T Sbjct: 1217 VMPMQIHCNDDKTVIFEPNDIFADTNCLSVATTVTNTDNSTIPVRFVNYSNDNIQLQQGQHIGTIH-----------EIDVVEVNVAKVFEGGMPPNFPF--------DYLNNEQNQAMENIFQKYSKVFATDDFDLGKTNIIKHFIPLDKDNPIKQRPYKAAYALKGEIKKQVEDMKHNKVIRNSFSPWASPIVMVKKKDGTMRFCVDYRKLNTVTRKDTYPLPRIDEMLDKLNNSKFFTSLDLQSGYWQIEISEEDKYKTAFTTGEGLYEFNVLPFGLTGAPATFQRCMSHILMDASHAMVYIDDILIYSIDFDEHLHDITMVLQRLELAGLKIKPRKCEWAKSMVTFLGHLVSSEGIKPDPKNVEKIKNFEKPVKVKGIQRFLGMAGYYRKFIPNFAKIASPLFDLTKK----------------ND-----NTLWTEKHQESFEELKNRLIHFPVLRFPDMNKDFIIMTDASGYAIGAVLGQKDEMLKDHVIAYASRILKSHEVNYSVIEKEALAIVYSVKQFHHYIWSRKIILYTDQRPLQWLMTHKDSSSRLIRWSLLLQEYDIDIKYRQGKANANADFLSRMDEPVQCMVSMLANFDKNELLQAQRADKGLFYIIEDTANIQNNSFANPRYELQSR--ILKYVTGNKVLTVIPDKLQEKIIKEYHDGPMGGHLSAKKTISAIGNRYYWKNLKDDVKEWCKTCNICLRRKGRAP-SRALLKPISSPSTPMETTAMDIMGPLPETTKGNKYILVFSDYFTKWPEAKALPDQKAQTIAKVFIEDIIFKYGAPSKLITDQGTNFLSEVMSEVNEFFKIDKHTTSAYHPQSDGLVERFNRTLEQMLSAYTNERQTDWDEYIAPCLFAYRNT 2046 HSP 2 Score: 403.675 bits (1036), Expect = 9.670e-109 Identity = 255/739 (34.51%), Postives = 406/739 (54.94%), Query Frame = 3 Query: 3282 AIIAYDCQNPKLGQKYSLLDVENCPEVNPTKLIVTEPKIFHVYQESDFIHTEAKECIIKFSEESFVCNQVARTMLV--PTWAPEALIITPRECEEAFXXXXXXXXXXXXXXAQAGARVKQSVNVVEWTSAGGYCMGGKYKIWGQIADNIVVRRQYYVELRXXXXXXXXXXXXMMTHKFCMLDESSCDTGESMIVYKIDKYECQLTKLKSLKFRTIRGK-----QFTGAESKRIKDQKRKTVIVQEKDTPTTYMADSEAEAMRFVEKGEAIKCGKAVVKTNYEGIYISSNEIKDAKLKIDKFDVKLSSYFNNKIDYFYHHQLVQLDKVYQATITNDCKLNREILRTKMAVAVTNPDLMAPILFAEKGTFARVVGEVLQTFQCKPVSVSLATNNQCTNELPVISKGETVYLQPITRILTDKTYIPRKIDKCTNLLDPLYQLNDEMWITMSDRKEAXXXXXXXXXXXXXXXXXQEINDMNNNGMYTRDAIESARKHMLFPNEKEKILSIMVSKVMEGSHGGDYNFDVLLSKEHFKKVVYKVLYSIWGYFAVLGNMFSTILGIYYTVALLKMICSSLVSLRQLRQVFGNSYKMLACLCPFVAKYLITAK-HDK--------EIRLIKNRRVEEEQLMENDKNDDNPSGSENVEQPQRGLYDSQNQQLRELSNNLDNKITNCHCVTRKTYGCYGIEANEILRELNEARPSIQVLIDNIIIKALVDTGATASMIREDQLSENRKK 5450 AI AYDC N KLG ++SLLD E CPE P + +I+H+YQE I++ AKEC + C + + ++ P+ E L I R CE+AF+ K+I+ D + LKA+ G +++ + V + G C GG+Y G+ +V Y + ++K + +FD + +MM+ +C + C G++ I+Y I K EC L LK++ F IRGK F + R K R + TP +A+ ++A+R V K + +KCG++V TNY+ I +S+ +K+A +KI K ++ L+ YFNNK DY YHHQL Q++ +Y+ I NDCKLNREILRTKMA+ VTNP++ AP++ KG F+RV+GEVLQTF+CK V V + ++ CT+ELPVI K + +YL+P+TR+L +KI KC+ L P Y+L+D WI P + +LT L ++F + D+ +G+Y + A+E ARK++L+P +++IL+ +V + G N+++LLS HF+K V+ +WG F + G + ++GIYY V LK + S +L ++ G S+K++ + P +A+ I+ K HDK R + R EE + +D +G +N E +R + +Q+ L N+ + + V + + N P I V I+ AL+DTG+ A+++ + L ++ Sbjct: 390 AIKAYDCDNAKLGTQFSLLDAEECPEAYPNQFEKRFNRIYHIYQERGLIYSAAKECTVTRRRSIRWCGHHSHSAIIKQPSMI-EYLNIGHRNCEDAFRLKEIRLADKLILKAKPGILIQEDIIKVGSIAFDGTCEGGEYWYQGKKIKQALVIETYQITIKKSEVAFDPDTNEMMSRSYCSAKSNFCFDGKTSIIYDIRKQECNLVFLKTVNFDVIRGKIFDNNLFIDKLNSRPKKIYRTEKTINSHITPVVLIANKTSDAIRLVRKDQVVKCGQSVYLTNYDRIVVSTVRVKEAIIKISKKEINLAVYFNNKADYLYHHQLRQIEDLYREMIINDCKLNREILRTKMALIVTNPNIAAPVIPLGKGVFSRVLGEVLQTFKCKQVEVKINISSDCTHELPVIYKNKFMYLEPVTRLLLPDVIKVKKI-KCSPLFSPAYKLSDNTWIVTPSLTPIAPPKRFQLTNLRNAVKFSRLKDLMKSGLYDKKAMEDARKYLLYPQVRDRILTEIVETSL--GDGNRPNYELLLSPNHFEKAAKNVMKKVWGRFLIFGQAIAGLMGIYYVVIFLKTFIEQVTSTYELYKIMGFSWKLILGIIPCLARPFISKKLHDKINDVEKKYANRHTYSNRDEEINVHVDDTETTVLNGDQNEE--RRRTVNVAGEQIYPLLNSKKKDESGANPVKGDNITFVRLYVGLV---DNVESPKILVQINGRTRIALIDTGSGATLLNYEGLKPQYRR 1119
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A147BAZ1 (Putative retrovirus-related pol polyprotein from transposon (Fragment) OS=Ixodes ricinus OX=34613 PE=4 SV=1) HSP 1 Score: 556.984 bits (1434), Expect = 3.385e-165 Identity = 294/772 (38.08%), Postives = 453/772 (58.68%), Query Frame = 1 Query: 6046 NYLNETQQFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIKRQIR--VKRGRRNKTKFFTMGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHE----LGALEVFVLVTEKPIDIQAEQNKDLEISKIREEI--RKGTNQKY*ISKKLVVIEDFSG------KQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHN 8313 ++ ++ +L++LL+ YS VFA+ + DLG D+IKH I+T + P+ QR Y IPY R+E+ +QIR + G +K G + R+ +DYR+LN VT D YP P QE +L +YF+V+D G+ QI+M+ D KTAF G YE+ R+P GL N+PA +QR + IL + Q C VYM+DI+I S+ F+ HL+DI VL+RL+ A +K+KP+KC++ +LGHIV+ +G+ P+P+K E ++NFP PT +++++ FLGL GYYR+FI ++AKIA P+ LT T +W + A+ +L++ L+TAP+L YPDF FI+ DAS A+ AVL Q + G + + +AS+ L A++ YS EKEC A+++A + F+ Y+YG I TD +PL L +D SRL +W +++Q+ +II+KPG + NADALSR + +GA+ FV V E I+ EQ +D E+ KI + + +Q Y + ++ + G ++ V+P+ L + +L YH+ GH +KT ++ KY W + +DVK +C +C C RK +G + +APL P E A+D + LP T GNK++LVF D+FTK+AEA P D+ A+TVA+ V +I+ + G P++LLTD+G NF+S +K + + K+ TTAYHP+++G VER N T+ L+ V ++Q DWD ++ + +N Sbjct: 198 GHIRAEERGRLESLLNGYSAVFARSKLDLGRCDVIKHRINTTSDAPVYQRAYRIPYSQRDEMAKQIRDLEEEGIVEPSKS-PWGAPALLVEKPDGSSRLVVDYRRLNAVTRVDPYPIPDIQETLAQLGSARYFSVVDLAAGFWQIEMDPRDKNKTAFNTPSGHYEWNRMPMGLVNSPAVWQRTADVILEGLIGQSCHVYMDDIVIYSRDFDSHLRDIERVLKRLRAAGLKLKPSKCQFLRSEVKYLGHIVSADGVRPDPEKEEAIRNFPRPTKVREIREFLGLVGYYRRFIDNFAKIAKPLTTLTSKYATF---------------------RWGDSEEGAYCKLRDMLLTAPVLGYPDFGSPFILATDASQYALGAVLSQVK-NGIERPMAFASRQLNKAEVNYSATEKECLAVIWATRHFRCYLYGRRFKIITDCRPLRWLMNVRDPGSRLARWNLQLQEYDYEIIHKPGSGHTNADALSRARDPPSTVGAVLSFVPVFEDGT-IKDEQERDPELRKISDRLAGNDSDDQGYFRDRMGLLRKGGPGQREGRARERTVIPKSLVEKVLYAYHNAPYSGHFGFKKTLRKITAKYVWRGMHRDVKSYCASCESCQLRK-SGQRRRAPLELFGEVKEPFERTALDIVGPLPITTEGNKYVLVFVDHFTKFAEALPLRDQKAETVARAFVERIVLRHGVPQQLLTDQGTNFVSGLMKETCRLLGVKKLTTTAYHPESNGAVERLNKTIKGLLSHLVARDQRDWDLWMPYVLFSYN 944
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A0V1MMY1 (Transposon Ty3-G Gag-Pol polyprotein OS=Trichinella papuae OX=268474 GN=TY3B-G PE=4 SV=1) HSP 1 Score: 529.635 bits (1363), Expect = 2.021e-155 Identity = 301/884 (34.05%), Postives = 478/884 (54.07%), Query Frame = 1 Query: 5803 IMLTDECVIPKNGIIPIRIANYERSNVKIHKGTRLGKLFKGELEQTLEMCETMVLRDDSEQMVELSKTNNVKFYDKV--KINNNYLNETQQFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIKRQIRVKRGR---RNKTKFFTMGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDVQ--HCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVFVLVTEKPIDI-----------------QAEQNKDLE-ISKIREEIRKGTNQKY*ISKK------------------LVVIEDFSGKQLIVVPQK-LRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQ-NDWDEYVSQCTYIHNIT 8319 + + V+P+ G +P+++ N V IH+G ++ T+E + + L + L T K D+V + + L+ L+ LL +++DVF+ ++ D+G T +H I+TG+A+PI+ P IP+ RE++ + + T +T + + +R C+D+RKLN VT KDSYP P+ E D L ++F+ +D GY Q+ + + D EKTAF GLY++ +PFGL NAPATFQR+M+ L ++ C VY++D++I +TF+EHL ++A VLQR++++ +K+KP KC+ LFLGHIV+ +G+ +P K E V ++P PT+ +V+ FLGL YYR+F++ +A IA P+ LT+ + Q W++E ++AF +LK L TAPIL +P F FI+ DAS + AVL Q+ + + VI YAS+TL + +YST KE +IV+ K F+PY+ G ++RTDH L L K+ ++ +W +Q+ ++++++ GR + NADA+SR E+ TE P +A Q++++E + + R+ TN ++ K L V+ +GK VP K R +L Q H+G GGHL +KTA ++ +Y+W +DVK WC C CA RK KAP+ I +PME+ A+D L +P + NGN +I+V +DYFT+W EA+ ++ A+TVA+ LV + + + GTP KLL+D+G F + + + + KI TTAYHPQ DG+VERFN TL L + + Q +DW+ + Q + +N + Sbjct: 162 VAIARAVVLPREGCVPVQLLNPSGDRVTIHRG---------KVVATIEAVDPLPLGRSPQTHAALP-TAVEKLLDEVAQRTTSEELD-----NLRALLTDFADVFSTYDGDIGRTTQAEHHINTGDAQPIRLCPRRIPWHFREQMNELLTDMLNKDIIEPSTSPWTAPVVLVKKKDG--NVRFCVDFRKLNLVTKKDSYPLPRIDETIDTLAGAEWFSTLDLTSGYWQVPVAKEDREKTAFCTPKGLYQFKVMPFGLCNAPATFQRVMDLTLTGLKWNKCLVYLDDVVIFGRTFQEHLNNLAEVLQRIRQSGLKLKPAKCRLCAKEILFLGHIVSRDGVRTDPSKTEKVASWPTPTSTSEVRTFLGLASYYRRFVKSFASIARPLHRLTEQGR---------------------QFSWSNEAEEAFQRLKRALTTAPILAFPRFDIPFIIDTDASETGIGAVLSQKHDPEGERVIAYASRTLSKTERKYSTTRKELLSIVYFTKLFRPYLVGQRFILRTDHDSLTWLRNFKEPEGQVARWLEHLQEYDMEVVHRRGRQHNNADAMSRRPEVTNDNGDHRTTEMPSAAVGAAAVSLSLKEGTEPSEAPQDENIECVIRFLRRGRRPTNSEWRELNKDSRDLVKQWKHLRLTPAGLAVV--VTGKPTRWVPPKHARLSILEQLHNGIGGGHLGVKKTAEKVKIRYFWPGWYRDVKAWCERCEACARRKTPPIVNKAPMESI-VVGNPMEIIAVDILGPVPRSRNGNSYIMVVTDYFTRWVEAYALPNQQAETVARKLVQQFVCRFGTPMKLLSDQGTQFQGRLVTELCKLLGIEKIRTTAYHPQCDGMVERFNRTLAMMLTTAMEEAQDDDWETQIPQVCFAYNAS 1004
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A0P5WAS7 (Retrovirus-related Pol polyprotein from transposon OS=Daphnia magna OX=35525 PE=4 SV=1) HSP 1 Score: 524.628 bits (1350), Expect = 3.174e-154 Identity = 292/787 (37.10%), Postives = 457/787 (58.07%), Query Frame = 1 Query: 6067 QFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYK----LREEIKRQIRVKRGRRNKTKFFTMGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEV----FVLVTEKP------IDIQAEQNKDLEISKIRE------------EIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKL-PTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLS--RLAVFVGKNQNDWDEYVSQCTYIHNITQKVGT 8334 Q L LL+++ D+FA + +LG+T++IKH IDT PI+QRPY + L ++++ + K R +++ + + + +N EIR C+DYRKLN +T KDS+P P+ E DKL K+FT +D GY QIQ+ + D EKTAFV+E+ LYE+ R+ FGL NAPATFQRLMN +L DV VY++D++I S TFE HL DI + LK A +K+K KC++A+ S +LGH+++ +GI P+P KI+ + N+ PT++ +V+ FLGL GYYR+FI+D+ IA P+ LT D KP W +E Q AF++L+ L+T P+L YP+F ++F + DA + AVL Q ++ G+++ I Y+S+ L A+++YST EKE A+V A+K F+ Y+ I +DH+PL+ L KD + RL +WA+ + + ++ Y+PGRI++NAD LSR+ ++ +++ L+ EK IDI+ K + K + EI +GT ++ + K + + + +V+P LR ++L + HD +GGHL+ KT ++ YYW ++KD+ +C AC IC NT + +A LHP +P ++ MDFL + P + NGN ILV +DYF++W EA D+TA+T A+ + II + G P+ +++D+G NF S+ + + + TTAY+P ++G ERFN TL S R + GK+ N W+E + + + + T Sbjct: 122 QAPLSQLLNDFHDLFASKDSELGNTNLIKHTIDTEGRGPIRQRPYRVTNNQRKLLEDKVQEMLDAKVIRYSQSPWASPVV--LVEKKN-GEIRFCVDYRKLNSITKKDSFPMPRIDETLDKLYGKKFFTTLDLASGYWQIQVHDPDIEKTAFVVENNLYEFERMAFGLCNAPATFQRLMNYVLRDVLGNKALVYLDDVVIFSDTFESHLNDIREIFNLLKAANLKLKLNKCQFAKRSVNYLGHVISTDGIKPDPSKIDKIVNYKTPTSVDEVRSFLGLAGYYRRFIKDFGSIAKPLTRLTH-----------------KDLSRKP-FAWGTEEQVAFEKLRNSLVTPPVLAYPNFNEKFFLFTDACEYGIGAVLSQIQD-GQEHPIAYSSRQLTKAEMKYSTTEKEALAVVDAIKYFRHYLLDKPFEIISDHRPLQWLKNQKDNNGRLGRWAILLAATNYELKYRPGRIHQNADCLSRL-KIASIQTVPNNITLICEKQLEDELCIDIRNYLEKGVLDEKFSQSKPDWAKEIEYFEIIEGTLYRHELPSKDSKRNEINHQ--LVLPYSLRHLVLKELHDAPMGGHLAFYKTYLKVKNNYYWPTMRKDILEYCQACEICTA--NTASTYRALLHPHELAKAPFQVIGMDFLGPITPVSPNGNSCILVITDYFSRWVEAVALKDQTAQTTAECVYKTIIVRHGMPKAIVSDRGTNFTSKLFRYFCKKLKVDQRLTTAYNPASNGETERFNRTLTSMLRKELKDGKHAN-WEEMLDDVLFAYRSSTHSST 880
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A0P4ZTQ7 (Retrovirus-related Pol polyprotein from transposon OS=Daphnia magna OX=35525 PE=4 SV=1) HSP 1 Score: 523.857 bits (1348), Expect = 6.441e-154 Identity = 293/786 (37.28%), Postives = 453/786 (57.63%), Query Frame = 1 Query: 6067 QFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYK----LREEIKRQIRVKRGRRNKTKFFTMGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEV---FVLVTEKP------IDIQAEQNKDLEISKIRE------------EIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKL-PTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLS--RLAVFVGKNQNDWDEYVSQCTYIHNITQKVGT 8334 Q L LL+++ D+FA + +LG+T++IKH IDT PI+QRPY + L ++++ + K R +++ + + + +N EIR C+DYRKLN +T KDS+P P+ E DKL K+FT +D GY QIQ+ + D EKTAFV+E+ LYE+ R+ FGL NAPATFQRLMN +L DV VY++D++I S TFE HL DI + LK A +K+K KC++A+ S +LGH+++ +GI P+P KI+ + N+ PT++ +V+ FLGL GYYR+FI+D+ IA P+ LT D KP W +E Q AF++L+ L+T P+L YP+F ++F + DA + AVL Q ++ G+++ I Y+S+ L A+++YST EKE A+V A+K F+ Y+ I +DH+PL+ L KD + RL +WA+ + + ++ Y+PGRI++NAD LSR+ V L+ EK IDI+ K + K + EI +GT ++ + K + + + +V+P LR ++L + HD +GGHL+ KT ++ YYW ++KD+ +C AC IC NT + +A LHP +P ++ MDFL + P + NGN ILV +DYF++W EA D+TA+T A+ + II + G P+ +++D+G NF S+ + + + TTAY+P ++G ERFN TL S R + GK+ N W+E + + + + T Sbjct: 122 QAPLSQLLNDFHDLFASKDSELGNTNLIKHTIDTEGRGPIRQRPYRVTNNQRKLLEDKVQEMLDAKVIRYSQSPWASPVV--LVEKKN-GEIRFCVDYRKLNSITKKDSFPMPRIDETLDKLYGKKFFTTLDLASGYWQIQVHDPDIEKTAFVVENNLYEFERMAFGLCNAPATFQRLMNYVLRDVLGNKALVYLDDVIIFSDTFESHLNDIREIFNLLKAANLKLKLNKCQFAKRSVNYLGHVISTDGIKPDPSKIDKIVNYKTPTSVDEVRSFLGLAGYYRRFIKDFGSIAKPLTRLTH-----------------KDLSRKP-FAWGTEEQVAFEKLRNSLVTPPVLAYPNFNEKFFLFTDACEYGIGAVLSQIQD-GQEHPIAYSSRQLTKAEMKYSTTEKEALAVVDAIKYFRHYLLDKPFEIISDHRPLQWLKNQKDNNGRLGRWAILLAATNYELKYRPGRIHQNADCLSRLKVASIQPVPNNIKLICEKQLEDELCIDIRNYLEKGVLDEKFSQSKPDWAKEIEYFEIIEGTLYRHELPSKDSKRNEINHQ--LVLPYSLRHLVLKELHDAPMGGHLAFYKTYLKVKNNYYWPTMRKDILEYCQACEICTA--NTASTYRALLHPHELAKAPFQVIGMDFLGPITPVSPNGNSCILVITDYFSRWVEAVALKDQTAQTTAECVYKTIIVRHGMPKAIVSDRGTNFTSKLFRYFCKKLKVDQRLTTAYNPASNGETERFNRTLTSMLRKELKDGKHAN-WEEMLDDVLFAYRSSTHSST 880
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000037150.1 (pep primary_assembly:Astyanax_mexicanus-2.0:10:22265216:22268869:1 gene:ENSAMXG00000033912.1 transcript:ENSAMXT00000037150.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 451.44 bits (1160), Expect = 1.903e-132 Identity = 271/819 (33.09%), Postives = 434/819 (52.99%), Query Frame = 1 Query: 6052 LNETQQFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIK---RQIRVKRGRRNKTKFFTMGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDVQHCAV--YMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELT---KGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQL---RYSTIEKECYAIVFAL-KQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSR-------------------------IHELG-ALEVFVLVTEKPIDIQAEQNKDLEISKI--------------REEIRKGTNQKY*ISKKLV---------VIEDFSGKQL--IVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNIT 8319 L+E Q + L D+Y D+FA+ E DLG T ++ H I + P++Q IP E +K +Q+ + RN ++ I T + +R+C+DYR+LN T +D+YP P+ +E D L K+F+ +D GY Q+ + E D KTAF GL+E+ R+PFGL NAPATFQRLM + D ++ +V Y++D+++ S + E+HL+ +A V RL+K +K+K +KC + +P +LGH+V+ EG+ +P KI+ V+ + P+ L +++ FLG YYR+F++ ++K+AAP+ +L G + KG++ V + + W +KAF LKE+L +AP+L Y DF K FIV +DAS + AVL QE+E GK I +AS+ L+ A+ YS+++ E A+ +A+ ++++ Y+ G EV I TD+ PL L K ++ +WA ++ + KI Y+PG+ N+NADALSR +H+ G E+ L +D+ Q D I + RE + T + +L+ V G + +++P+ L++ +L HD GH +T +L + +W + K V+RWC C C K K +A + A T P E+ A+DF P + +G +++LV +D FTK+ +A PT D+ A TVA++LV + G P ++ +D+G NF S I+++ NM+ + K TAY PQ +G ERFN TL L + W Y+S + +N T Sbjct: 280 LSEEQMAAVSLLFDQYQDIFAQTEGDLGCTTLLTHEIPLLDEVPVRQPYRRIPPSQYEAVKLHIQQLLDSKVIRNSASPYSSPIVLVTKKDG--SLRLCVDYRQLNAKTRRDAYPLPRIEESLDALAGAKWFSTLDLASGYNQVPVSEKDRYKTAFCTPFGLFEFNRMPFGLCNAPATFQRLMERMFGDCRYQSVLLYLDDVIVFSSSVEQHLERLAEVFSRLQKQGLKVKLSKCHFFQPQVNYLGHVVSREGVATDPAKIDAVRGWRRPSHLAELRSFLGFASYYRRFVEGFSKLAAPLHQLVGKLGGARRKGKTLPVPLAAS-----------WDERCEKAFQSLKERLTSAPVLAYADFSKPFIVEVDASHGGLGAVLSQEQE-GKVRPIAFASRGLRPAERNMDNYSSMKLELLAVKWAVTEKYREYLLGNEVTILTDNNPLSHLQTAKLGATE-QRWASQLASFNFKIKYRPGKSNQNADALSRQYVDRFAIGTKVPPLRMELLESEPMVHKTGQCTEMVALAGRSALDLHLLQEADPVIGPVCKFRKEGRYPRAEEREALSSPTKALFRQWDRLLEKDGVLYRAVQPSGGGPETCQLLLPKHLQEEVLSSVHDDH--GHQGVERTLKQLQSRCFWPGMAKHVERWCQQCRRCVLSKAVQPKIRAFQGTLQA-TRPHEILAIDFTLLEPAS-DGRENVLVLTDVFTKYTQAIPTRDQRASTVAQVLVQHWFHRFGLPSRIHSDQGRNFESMLIQQLCNMYGIQKSRATAYRPQGNGQCERFNRTLHDLLRTLPQSEKRRWPHYLSPMVFAYNTT 1079
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000052546.1 (pep primary_assembly:Astyanax_mexicanus-2.0:2:13031363:13036570:1 gene:ENSAMXG00000033629.1 transcript:ENSAMXT00000052546.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 449.899 bits (1156), Expect = 1.827e-128 Identity = 281/950 (29.58%), Postives = 483/950 (50.84%), Query Frame = 1 Query: 5725 IPVKVNVKSEDTLIFEPDKSITKNHNIMLTDECVIPKNGIIPIRIANYERSNVKIHKGTRLGKLFKGE---LEQTLEMCET-------MVLRDDSEQMVELSKTNNVKFYDKVKINNNYLNETQQFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIKRQIR--VKRG--RRNKTKFFTMGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDVQH--CAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQ---LRYSTIEKECYAIVFAL-KQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLL---KWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEV------FVLVTEKPIDI---QAEQNKDLEIS---KIREEIRKGTN----------QKY*ISKKLVVIEDFSGKQLIVVPQ-----KLR----QILLLQYHDGAL---------------------------------GGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHN 8313 +P KV + ++ EP + +M+ + +G +P+R+ N +++ ++L + K + QT+ + E + RDD + + N + V++N + L +Q +L LL+++ D+F+K + D G T + H I TG+A P+KQR +P ++ +E K+ ++ V RG + + + + + + +R C DYR+LN VT KD+YP P+ +E D L + ++F+ +D GY Q+ +++ D EKTA GL++++R+PFGL NAPATFQRLM +L D+ VY++DI+I S+ F+ H + + V RL+ +K+KP+KC +P FLGHI++ +G+ + +K+ V++ +P+P T++ ++ LG YYR+F+ +A++A P+ L G +G + G + W+ E Q AFD+LK L++ P+L YPDF + FI+ D S + AVL Q ++ G + VI YAS+ L+G++ YS + E A+ +A+ ++F+ ++ + + TDH PL ++ D+++ + +W ++ + + I YKPGR N NAD LSR+ E F+L+ + + A + +++E + ++ IRKG + QK + V GK L Q KLR Q L+ GAL GGH R T + Q YYW ++ +DV+ W C CA K+ + +AP+ + ++P+E+ AMD+ L + G +++LV +D FT++ A PT ++TA T AK L+ G P +L +D+G NF S IK + ++ + K T+ YHPQ + ERFN TL L + + +W EY+ + ++N Sbjct: 569 VPPKVTCQ----VLVEPAPKVNMPKGLMVANVLAKAADGKVPVRVLNVSGCPIRLMPRSKLASVHKPQEVLSRQTVVLEEGDGVLHVRAIHRDDL-----VPECNEGQLPVPVQVNADGLTSSQYQELMDLLEKHKDIFSKSDSDFGYTTAVTHSIPTGDAPPVKQRHRRVPPQVFQEFKKHVQSLVDRGILEESCSPWASPAVIVI---KKDGTVRFCCDYRRLNQVTCKDAYPLPRVEESLDALGNAQWFSTLDLTAGYFQVAVKDSDREKTAVTTPFGLFQWSRMPFGLCNAPATFQRLMGVVLGDLAFDILLVYLDDIIIFSRDFKSHCERLELVFNRLRHHGLKLKPSKCFLLKPEVKFLGHIISAKGVQVDAEKVRVLETWPIPKTVKDIRQVLGFMSYYRRFVPKFAQLAKPLHALVGGKMNRGRATGPIT--------------WSGECQTAFDKLKGCLMSPPVLAYPDFTQPFILTTDGSLHGLGAVLSQ-KQGGTERVIAYASRGLRGSEKNDKNYSAFKLELLALKWAVTEKFRDFLMFAKFSVVTDHNPL----RYLDSANLGVVEQRWVAQMAEYNFDISYKPGRQNANADVLSRLPAHEEPEAKDTGKDFILINTEEVRACLWPAAERREVEPAVHVAVQASIRKGVSGYSWGEIEEQQKCDPDIRPVYSAVLRGKNLSPAEQRAMTPKLRKLSKQFDRLKLRHGALFRCICHPRDGEGVWQLIVPESLQRKVYESQHEHGGHFGERSTLEMMRQSYYWPSMSRDVQDWIKQCKRCALAKDVLPRNRAPM-TCSSVSAPLEVLAMDYTL-LERSSGGYENVLVLTDMFTRFTVAVPTKNQTAHTTAKALLKHWFVHYGCPARLHSDQGRNFESHVIKELCKLYGIAKSRTSPYHPQGNANCERFNRTLHDMLRTLPPEKKRNWKEYLPELVMVYN 1485
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000041682.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002320.1:24977:29035:1 gene:ENSAMXG00000038531.1 transcript:ENSAMXT00000041682.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 442.58 bits (1137), Expect = 2.613e-128 Identity = 278/920 (30.22%), Postives = 485/920 (52.72%), Query Frame = 1 Query: 5755 DTLIFEPDKSITKNHNIMLTDECVIPKNGIIPIRIANYERSNVKIHKGTRLGKLFKGELEQTLEMCETMVLRDDSEQMVELSKTNNVKFYDKVKINNNYLNETQQFKL-QTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIKRQIRVKRGR---RNKTKFFTMGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVD--VQHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAP---MIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQ---LRYSTIEKECYAIVFAL-KQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIH-------------------ELGALEVFV----LVTEKP-IDIQAEQNKD----------------------------LEISKIREEIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNIT 8319 + FEP S T ++++ + +G + + + N E ++ + LG+LF E++ TL + L SEQ+V + + + + + + +Q +L + LL YS VF++ E +LG T +I+H I + P+KQR +P + +K I+ R R ++ + + IR+C+DYR+LN T KD+YP P+ +E D L ++F+ +D GY Q+ M E D KTAF GL+E+ R+PFGL NAP+TFQRLM I D Q +Y++DI+I S TF+ HL+ + VL+RL++ +K+K +KC + + +LGH+++ G+ +P+KI+ V + P T+ Q++ FLG YYR+F++ +AK A+P ++ + +G K + ++K V + W+ ++AF+ LK KL++AP+L Y DF K FI+ +DAS + AVL Q++E G+ I YAS+ L+ ++ YS+++ E + +A+ ++F+ Y+ G + + TD+ PL L K + +W ++ + I Y+PG N+NADALSR+ ++GA + + V +P D+Q Q+ D LE+ + ++R+ Y +++ +E+F +V+P+ L++ +L HD GH + +TAS + Q+ +W ++ K ++RWC C+ C K K + + + A + P+E+ A+DF + +G +++LV +D F+K+ +AFPT D+ A TVA +LV K + G P+++ +D+G NF S+ +K + ++++ K TT YHPQ +G ERFN T+ L + + W +Y+ Q + +N T Sbjct: 182 SSAFFEP-HSHTLPDGLLMSRALLSIDSGSVAVPVVNVEHRDIWLPPRVTLGQLFAVEMQPTLSTGKVEELFHCSEQVVAVQSLAVAEDFSDLTVGSWPTLTPEQSQLGKDLLQRYSSVFSQDEGELGCTHLIEHEIPLIDDTPVKQRYRRLPPSQYDLVKGHIQELLDRKVIRASCSPYSSPVVVVQKRDG--TIRLCVDYRQLNSKTRKDAYPLPRIEESLDALGGARFFSTLDLASGYNQVPMAEHDKSKTAFCTPFGLFEFNRMPFGLCNAPSTFQRLMERIFGDERFQSLLLYLDDIVIFSSTFDLHLQRLEVVLKRLQQNNLKLKLSKCHFFQSQVKYLGHVISSAGVATDPEKIKAVSEWERPQTVTQLRSFLGFASYYRRFVEGFAKHASPLHRLVAVLQGGKRRVKTKPV-------------EGHWSDACEEAFETLKLKLVSAPVLGYADFSKPFILEIDASHGGLGAVLSQDQEGGRR-PIAYASRGLRDSERNMSNYSSMKLELLGLKWAVTEKFREYLLGAQFTVYTDNNPLSYLQTAKLGAVE-QRWVSQLALFNFNIKYRPGLSNRNADALSRLPACPTPQSFQETVSGISIPLQVGATKATISTIDAVPLRPKADLQRLQSADPVIGPFLQYWHRQKFPTAGERAQESKEVLELVRQWNKLRECDGVLYRLTRTPDGVEEF---LQLVLPECLQKEVLTALHDNH--GHQGAERTASLVRQRCFWPHMWKKIERWCKECSRCVVAKMGQPKIRTFMGNLSA-SKPLEIIAIDFTL-MDRASDGRENVLVITDVFSKFTQAFPTQDQRASTVAHILVEKWFYVYGVPQRIHSDQGRNFESDLLKSLCKIYDVKKSRTTPYHPQGNGQCERFNRTMHDLLRTLPSEQKRRWPKYLPQLLFAYNTT 1076
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000041345.1 (pep primary_assembly:Astyanax_mexicanus-2.0:25:32334536:32339002:1 gene:ENSAMXG00000029230.1 transcript:ENSAMXT00000041345.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 443.351 bits (1139), Expect = 1.159e-127 Identity = 258/768 (33.59%), Postives = 407/768 (52.99%), Query Frame = 1 Query: 6076 LQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIKRQIRVKRGR---RNKTKFFTMGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHE------LGALEVFVLVTEKPID---IQAEQNKDLEISKIREEIRKGTNQK---Y*ISKKLVVIEDFSGKQL-----IVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHN 8313 L LL ++ V LG T I+ H I T + PI+Q+PY + + ++ IK I + R R T + + E +R C+DYR++N T D+YP P+ QE + L F+ +D GY Q+ +E KTAF+ GLYE+T LPFG+ NA ATFQRLM+++LV++ + C VY+ DI++ S T E+HL + V + L +A + + KC + S +FLGH+++ EGI P K+E ++ FP P +++++Q FLG+ G+Y +FI +++ AA + L K N P WT E QKAF+ +K+ LITAP+L P+F + F + DAS + + AVL Q + G ++V+ YAS+ L+GA+ YST EKEC A+V+A+++++ Y+ G + TDH L ++ H +SRL +WA+++Q + Y+ G+ N D LSRI + + +V P+D I Q D + R+E +K + ++K ++ +QL +VVP + R+ L HD L GHL KT RLL YW ++++DV +C +C IC K +K L P P + +D + LP + N+H+LV DY +KW E FP + + ++L+ I + GTP L++D+GA F S + + + + TTAYHPQT+ L ER N TL + +A +V WD+++ + + N Sbjct: 596 LHKLLSQWPSVCTNQ---LGRTMIVLHHITTNDNLPIRQKPYKVSIEKQQLIKEAIEDMQRRGIVRPSTSPWASPVVLVPKKEG--GVRFCVDYRRMNSKTHLDAYPMPQVQEILESLHGAAIFSTLDLKSGYWQVGLEPDSIPKTAFITCQGLYEFTVLPFGIKNAAATFQRLMDSVLVNLKGKSCFVYINDIVVYSSTIEQHLGHLEEVFRCLHQAGLTLNLRKCNLLQRSLIFLGHVISGEGICTEPGKVEAIQAFPEPRSIKELQRFLGMAGWYHRFITHFSERAAILNALKKK--------------------NAPW-IWTQECQKAFEDIKQALITAPVLTPPNFSEPFQIQTDASDQGLGAVLSQGTD-GLEHVVAYASRLLQGAERNYSTAEKECLAVVWAVEKWRVYLEGRHFTVITDHSALSWVFNHPKPTSRLTRWAIRLQTFDFSVQYRKGKCNIVPDTLSRIPDRMTEGVMAPCQVTGSSDGLPVDWAEIARAQEVDGTLQPQRDETGNQETRKDRIHFVTKNDILFRAVPNQQLGHTLQVVVPVQHREAFLQYAHDNPLSGHLGQMKTLLRLLNIAYWPSIRRDVWTYCKSCEICQKYKPRISKLSGRLQSTP-VVEPGYMLGVDLMGPLPKSPRQNEHLLVIVDYCSKWVEMFPLREAKTSQIVQILIKDIFTRWGTPAYLVSDRGAQFTSRLLHATCRQWGVVQKLTTAYHPQTN-LTERVNRTLKTMIASYVKDKHRLWDQWIPEFRFAIN 1334
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000041754.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02001938.1:55959:59870:1 gene:ENSAMXG00000043385.1 transcript:ENSAMXT00000041754.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 439.499 bits (1129), Expect = 1.163e-127 Identity = 275/818 (33.62%), Postives = 433/818 (52.93%), Query Frame = 1 Query: 6052 LNETQQFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIK---RQIRVKRGRRNKTKFFTMGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDVQHCAV--YMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGV---KTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQL---RYSTIEKECYAIVFAL-KQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSR-------------------IH-ELGALE-----VFVLVTEKPIDIQAEQNKDLEIS---KIREEIRKGTNQK----Y*ISKKLVVIEDF--------------SGKQL----IVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNIT 8319 L + Q + + L +YS++FAK E DLG T +I H I + P++Q IP +K +Q+ R R + F+ I T + +R+C+DYR+LN T +DSYP P+ +E D L K+F+ +D GY Q+ +EE D KTAF GL+E+ R+PFGL NAP TFQRLM I D ++ +V Y++D+++ S+T EEHL+ + V RL+K +K+K +KC++ + +LGH+V+ EG+T +P KIEVVK + P+ L +++ FLG YYR+F++ ++K+AAP+ L G+ + KG++ + W +E ++AF LK++L + P+L Y DF K FIV +DAS + AVL QE+E GK I +AS+ L+ + YS+++ E A+ +A+ ++F+ Y+ G + I TD+ PL L K + +WA ++ + I Y+PG+ N+NADALSR +H E ALE V P D+ Q D I K R E R+ ++ +SK L+ D SG+ +++PQ L++ +L HD GH + +T L + +W N+ +DV+RWC C C K K +A P E+ A+DF P + +G +++L+ +D FTK+ +A T D+ A TVA LV + G P ++ +D+G NF S IK++ ++++ K TT+Y PQ +G ERFN TL L + + W ++ Q T+ +N T Sbjct: 264 LTDLQAQRARALFQKYSNIFAKSEGDLGCTSLISHEIPLLDEVPVRQPYRRIPPSQYSTVKAHIQQLLDSRVIRESSSPFSSPIVLVTKKDG--SLRLCVDYRQLNAKTRRDSYPLPRIEESLDALCGAKWFSTLDLASGYNQVPVEEKDKSKTAFCTPFGLFEFNRMPFGLCNAPGTFQRLMERIFGDCRYQSVLLYLDDVIVFSQTVEEHLERLEEVFSRLQKQNLKVKLSKCQFFQHQVSYLGHVVSAEGVTTDPAKIEVVKEWKSPSHLAELRSFLGFASYYRRFVEGFSKLAAPLHRLVGGLSGPRRKGKTPKTSLAAF-----------WDAECEQAFQSLKDRLTSTPVLAYADFNKPFIVEVDASHGGLGAVLSQEQE-GKVRPIAFASRGLRPTERNMENYSSMKLELLAVKWAVTEKFREYLLGHQFTIYTDNNPLSHLQTAKLGAVE-QRWASQLASFNFTIKYRPGKHNQNADALSRQYLERFAVGTKVPPLVMEAVHEERSALENQCRQVVAFPGRSPSDLGVLQRADPVIGPVWKFRSEGRRPRTEERDTLCNLSKVLIRQWDRLVEREGVLYRRAYPSGRGSEYFQLLLPQCLQKEVLHSVHDDH--GHQGTERTLQLLRDRCFWPNMTQDVERWCQQCQRCTLGKAVQPKVRA-FQGTLQAAHPNEILAIDFTILEPAS-DGKENVLILTDIFTKYTQAIATKDQRASTVAWALVQHWFHRFGPPVRIHSDQGRNFESLLIKQLCKVYSIQKSRTTSYRPQGNGQCERFNRTLHDLLRTLPVEEKRHWPRHLPQLTFAYNTT 1062
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004121.1 (pep scaffold:Pmarinus_7.0:GL477387:93825:107330:1 gene:ENSPMAG00000003764.1 transcript:ENSPMAT00000004121.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 93.9745 bits (232), Expect = 1.638e-20 Identity = 72/277 (25.99%), Postives = 132/277 (47.65%), Query Frame = 1 Query: 7510 FVLVTEKPIDIQAEQNKDLEISKIREEIRKGTNQKY*ISKKLV--VIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKA-PLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFM-----SETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNI 8316 F+ ++E P I +NK + +RK N K+ + K++ V ++++V+ + ++ +L+ H GA GH +KT +L YYW + DVK +C +C +N G++ A P + + P E+ +D L LP T N+++L+ DYF+KWAEA P +++ + VA L + + G PRK+ + G F+ S T+ R + + A+ L + N L + + ++ +DW+ V Q + + + Sbjct: 24 FLQMSEFPEHILHNKNK-------KRALRKCAN-KFVLKGKVLYYVGRKRERRRMVVMDEDEKRNILMSVH-GA--GHFGQKKTILKLEADYYWLGMISDVKNLIASCGVC---RNKGSRRVAMPSMKLLKASGPWEVLGLDVLGPLPVTSRANRYLLLLIDYFSKWAEAVPLIEKSQEHVASALTV-VFCRYGFPRKVFSSLGKEFVTQVNKSSTLSRAYQRCSPSQTQVHAHVSVRVALNKATNQALKGCVNLVASQHPSDWESRVEQSLFEYRV 285
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004123.1 (pep scaffold:Pmarinus_7.0:GL477387:93825:107321:1 gene:ENSPMAG00000003764.1 transcript:ENSPMAT00000004123.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 91.2781 bits (225), Expect = 1.211e-19 Identity = 71/279 (25.45%), Postives = 133/279 (47.67%), Query Frame = 1 Query: 7510 FVLVTEKPIDIQAEQNKDLEISKIREEIRKGTNQKY*ISKKLV--VIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKA-PLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNM-HKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNITQKVGT 8334 F+ ++E P I +NK + +RK N K+ + K++ V ++++V+ + ++ +L+ H GA GH +KT +L YYW + DVK +C +C +N G++ A P + + P E+ +D L LP T N+++L+ DYF+KWAEA P +++ + VA L + + G PRK+ + G F+++ K + + H + G + N L + + ++ +DW+ V Q + + + + T Sbjct: 24 FLQMSEFPEHILHNKNK-------KRALRKCAN-KFVLKGKVLYYVGRKRERRRMVVMDEDEKRNILMSVH-GA--GHFGQKKTILKLEADYYWLGMISDVKNLIASCGVC---RNKGSRRVAMPSMKLLKASGPWEVLGLDVLGPLPVTSRANRYLLLLIDYFSKWAEAVPLIEKSQEHVASALTV-VFCRYGFPRKVFSSLGKEFVTQVNKIQHKKWCISHTLQNLCETRGPAGWHKATNQALKGCVNLVASQHPSDWESRVEQSLFEYRVGKHSTT 287
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009777.1 (pep scaffold:Pmarinus_7.0:GL476990:135790:139231:-1 gene:ENSPMAG00000008837.1 transcript:ENSPMAT00000009777.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 82.4185 bits (202), Expect = 1.243e-16 Identity = 53/180 (29.44%), Postives = 84/180 (46.67%), Query Frame = 1 Query: 7627 KKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLH-PIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNM 8163 KKL SG++ +VV + + +LQ GA H +T L + YYW + D++ + NAC IC K K + H + + P E+ MD L P T ++ +L+ DYFTKWAE P D++A V L + G P+KL + ++++ + + F M Sbjct: 48 KKLYYTGQKSGRKRLVVMNEEDKRSILQRVHGA--DHCGQTRTRKLLEEHYYWKGMVNDIRDYINACEIC---KQKSYKRSSISHVKLLKASYPWEVLGMDLLGPFPATSRAHRFVLLIVDYFTKWAELTPMTDQSAAHVVAALTT-AFHRFGFPKKLFCNVSEEYVAQINEEMFRHFPM 221
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Match: EDO33875 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SR01]) HSP 1 Score: 54.299 bits (129), Expect = 1.102e-8 Identity = 25/86 (29.07%), Postives = 52/86 (60.47%), Query Frame = 1 Query: 6634 EDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGY 6891 +D++ +FEEHL+ I +LQ ++ + K K ++A S FLGH++ G+ P P+K++ ++ + PT ++++ F+G+ + Sbjct: 1 DDVICFHSSFEEHLRGIERMLQAVRASGFK-SIKKSQFATRSVKFLGHVIDQNGVRPQPEKLD-IRQWETPTNEEELRKFIGVCTF 84
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000036827.1 (pep primary_assembly:ASM223467v1:16:28613823:28617539:1 gene:ENSORLG00000023550.1 transcript:ENSORLT00000036827.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 456.062 bits (1172), Expect = 8.145e-134 Identity = 275/835 (32.93%), Postives = 421/835 (50.42%), Query Frame = 1 Query: 5971 DDSEQMVELSKTNNVKFYDKVKINNNYLNETQQFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIKRQIRVKRGRRN-----KTKFFTMGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSR----------IHELGALEVFVLVTEK--------PI----------DIQAEQNKDLEISKIREEIRKGTNQKY-------*ISKKLVVIEDFSGKQL--------------------IVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYV 8289 D +VE + VK + + + + L Q+ +L +L EY D+FA E ++G T ++ H IDTG+ARPIK RP +P L ++ ++ R + G+ + ++R C+DYR LN VT KDSYP P+ E D + + +F+ +D GY Q+ + KTAF GL+++ L FGL NAPATF+RLM +L + Q C VY++DIL+ +F+ L+ + VLQR+ A +K+ P KC + FLGH + EGI+ +K++ V+++P PTTL+ ++ FLGL YYR+F++ ++ IAAP+ L + K V WT E ++AF LK+ L +PIL PD K FI+ DAS + AVL Q G + V+ Y SKTL A+ RY +E A+V A+ F+ Y+ G +RTDH L+ L K+ ++ +W ++ + ++PG + NADA+SR + A E + E+ P+ + +A Q +D+++ + + + G ++ SK L E F +L +VVP+ LR +L H A GH KT R+ Q +YW L++DV+ +C C IC K +++A L + A +PME A+D + P T GN+ +LV DYFTKW EA+ D+ A TVA LV + + G + +D+G NF S + M K TT HPQ+DGLVERFN TL+ +LA+ +Q+DWDE++ Sbjct: 204 DQRNAVVEADRVTAVK--EIWRRSCDGLQPGQKDELWKVLLEYRDIFALSEDEVGLTHLVHHEIDTGDARPIKTRPRRLP--LAHQVAADSAIEEMLRGGIIEPSDSPWASGVVMVKKKKG-PKMRFCVDYRPLNGVTKKDSYPLPRIDESLDLVSGSSWFSSLDLRSGYWQVPLSPAARPKTAFCTGRGLWQFRVLSFGLCNAPATFERLMEKVLASIPRQECLVYLDDILVHGGSFKAALESLRKVLQRIAAAGLKLHPDKCCFMRRELEFLGHKIGGEGISTLEEKVQAVRDWPTPTTLRDLKSFLGLASYYRRFVRGFSCIAAPLFHLQR--------KDCDFV-------------WTQECEQAFSSLKKALTNSPILTPPDPKLPFILDTDASDVGMGAVLSQMGSAG-ERVVAYFSKTLSKAERRYCVTRRELLAVVKAIGHFRYYLCGLPFTVRTDHSALQWLMTFKEPEGQIARWLEELASFSFTVEHRPGSRHANADAMSRRPCALAGCQYCEKREAREAVISREEQSHTGESSWPVCRLVQGVDSTEWRAHQEQDVDLQPVLQWVEAGRKPEWGEVAGCSPGSKGL--FEKFDALRLKDGVLQRAWKEPATGEERWQVVVPRTLRNSVLQGCHGAAGSGHFGVSKTLRRIRQGFYWGQLRRDVEDFCRRCDICTAHKGPPDRSRAELQQL-AAGAPMERVAVDIMGPFPRTNRGNRFVLVAMDYFTKWPEAYAIPDQEAVTVADALVEGMFSRFGAAEVIHSDQGRNFESAVFSAMCERLGMRKTRTTPLHPQSDGLVERFNRTLVKQLAILTSAHQSDWDEHL 1008
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000032171.1 (pep primary_assembly:ASM223467v1:18:2114932:2117958:1 gene:ENSORLG00000025397.1 transcript:ENSORLT00000032171.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 432.95 bits (1112), Expect = 3.461e-128 Identity = 271/816 (33.21%), Postives = 431/816 (52.82%), Query Frame = 1 Query: 6073 KLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIKRQIR--VKRG--RRNKTKFFTMGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVD--VQHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQL---RYSTIEKECYAIVFAL-KQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVFVLV--TEKPIDIQAEQ------------------------NKDLEISK---------IREEIRKGTNQKY*ISK--------------------KLVVIEDFSGKQL--IVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNIT 8319 K Q LL +Y++VFA HE DLG T ++ H I + P++QR IP E +K I + G R + + + + + + + +RMC+DYR+LN T +D++P P+ E D L ++FT +D GY Q+ + EGD KTAF GL+E+ R+PFGL NAP TFQRLM I D Q +Y++DI++ S T +EHL+ + VL RL++ ++++K KC + + +LGH+++ +G++ +P KIE V + P+T+ +++ FLG YYR+F++ +A++AAP+ L GE G ++ K + Q WT+E Q+ FD LK+KL +AP+L Y DF F + +DAS + AV Q E+ G I YAS+ LK + YS+++ E A+ +A+ ++F+ Y+ G V+ TD+ PL L K +W ++ +I Y+ GR+N+NADALSR + EV + + P D+Q Q +DL++S R++ +++ +SK + V++ D SG+++ +++P+ L +L Q H GH +T + L + YW + KDV WC AC C K+ APL + A + P EL AMDF P+ G +++LV +D F+K+ A PT D+ A TVAK+LVA+ K G P +L +D+G +F S+ I+++ ++ + K TT YHP +G ERFN TL + L + DW + Q T+ +N T Sbjct: 185 KAQALLQKYANVFAAHEGDLGCTTLMTHEIPLLDDAPVRQRHRRIPPSEYEAVKDHINQLLASGVIRESNSPYASPIVL---ARKKDGSLRMCVDYRQLNSKTRRDAFPLPRIDESLDALSGARWFTTLDLASGYNQVPVTEGDRAKTAFCTPFGLFEWNRMPFGLCNAPGTFQRLMQRIFGDQQCQSVLLYLDDIVVFSSTIDEHLERLELVLGRLQQEKLRVKLPKCAFFQQEVRYLGHVISDQGVSTDPHKIEAVAGWQPPSTVSELRTFLGFASYYRRFVEGFARLAAPLHRLV------GELDG---TKSRRRKASSLQGHWTTECQQNFDALKQKLTSAPVLAYADFTLPFFLEVDASHNGLGAVFPQ-EQGGSVRPIAYASRGLKATERNMQNYSSMKLEFLALKWAMTEKFREYLLGHHCVVFTDNNPLSYLSTAK-LGEMEQRWVAQLAAFDYEIKYRSGRVNRNADALSRHPNHSSAEVGNMAPGSSLPRDLQQVQVQPVLAHCEMEQLMPVFPQRTTAEVQDLQVSDPVLASVLPFWRDQRYPNYSEREGLSKVALTLLRQWKNLAEVDGLVYRRVLMPD-SGQEVFQLLLPEILIPEVLEQVHQHH--GHQGIERTLALLRARCYWPGMSKDVAHWCQACERCQLAKDNSRSHSAPLGHLIA-SRPNELVAMDFTILEPSR-TGVENVLVLTDVFSKYTVAIPTRDQRAATVAKVLVAEWFSKFGVPARLHSDQGRSFESQLIQQLCGLYGIEKSRTTPYHPAGNGQCERFNRTLHNLLRALQVTRKRDWHSCLPQVTFCYNTT 981
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000041674.1 (pep primary_assembly:ASM223467v1:5:30088905:30092924:1 gene:ENSORLG00000022054.1 transcript:ENSORLT00000041674.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 439.884 bits (1130), Expect = 1.666e-127 Identity = 274/815 (33.62%), Postives = 430/815 (52.76%), Query Frame = 1 Query: 6073 KLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIK---RQIRVKRGRRNKTKFFTMGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVD--VQHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQL---RYSTIEKECYAIVFAL-KQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVFVLV--TEKPIDIQAEQ------------------------NKDLEISK---------IREEIRKGTNQKY*ISK--------------------KLVVIEDFSGKQL--IVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNIT 8319 K Q LL +Y++VFA HE DLG T ++ H I + P++QR IP E +K Q+ R + I + +RMC+DYR+LN T +D++P P+ E D L ++FT +D GY Q+ + EGD KTAF I GL+E+ R+PFGL NAP TFQRLM I D Q +Y++DI++ S T +EHL+ + VL RL++ ++++K KC + + +LGH+++ +G++ +P KIE V + P+T+ +++ FLG YYR+F++ +A++AAP+ L GE G ++ K + Q WT+E Q+ FD LK+KL +AP+L Y DF FI+ +DAS + AVL Q E+ G I YAS+ LK + YS+++ E A+ +A+ ++F+ Y+ G V+ TD+ PL L K + +W ++ +I Y+ GR+N+NADALSR + EV + + P D+Q Q +DL++S R++ +++ +SK + V++ D SG+++ +++P+ L +L Q H GH +T + L + YW + KDV WC AC C K+ APL + A + P EL AMDF P+ G +++LV +D F+K+ A PT D+ A TVAK+LVA+ K G P +L +D+G +F S+ I+++ ++ + K TT YHP +G ERFN TL + L + DW + Q T+ +N T Sbjct: 277 KAQALLQKYANVFAAHEGDLGCTTLMTHEIPLLDDAPVRQRHRRIPPSEYEAVKDHINQLLASGVIRESNSPYASPIVLARKKDG--SLRMCVDYRQLNSKTRRDAFPLPRIDESLDALSGARWFTTLDLASGYNQVPVTEGDRAKTAFCIPFGLFEWNRMPFGLCNAPGTFQRLMQRIFGDQQCQSVLLYLDDIVVFSSTIDEHLERLELVLGRLQQEKLRVKLPKCAFFQQEVRYLGHVISDQGVSTDPHKIEAVAGWQPPSTVSELRTFLGFASYYRRFVEGFARLAAPLHRLV------GELDG---TKSRRRKASSLQGHWTTECQQNFDALKQKLTSAPVLAYADFTLPFILEVDASHNGLGAVLSQ-EQGGSVRPIAYASRGLKATERNMQNYSSMKLEFLALKWAMTEKFREYLLGHHCVVFTDNNPLSYLSTAK-LGAMEQRWVAQLAAFDYEIKYRSGRVNRNADALSRHPNHSSAEVGNMAPGSSLPRDLQQVQVQPVLAHCEMEQLMPVFPQRTTAEVQDLQVSDPVLASVLPFWRDQRYPNYSEREGLSKVALTLLRQWKNLAEVDGLVYRRVLMPD-SGQEVFQLLLPEILIPEVLEQVHQHH--GHQGIERTLALLRARCYWPGMSKDVAHWCQACERCQLAKDNSRSHSAPLGHLIA-SRPNELVAMDFTILEPSR-TGVENVLVLTDVFSKYTVAIPTRDQRAATVAKVLVAEWFSKFGVPARLHSDQGRSFESQLIQQLCGLYGIEKSRTTPYHPAGNGQCERFNRTLHNLLRALPVTRKRDWHSCLPQVTFCYNTT 1073
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000040501.1 (pep primary_assembly:ASM223467v1:1:1251188:1255180:-1 gene:ENSORLG00000023024.1 transcript:ENSORLT00000040501.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 433.721 bits (1114), Expect = 1.337e-125 Identity = 265/815 (32.52%), Postives = 430/815 (52.76%), Query Frame = 1 Query: 6025 DKVKINNNYLNETQQFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIP---YKLREEIKRQIRVKRGRRNKTKFFTMGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQL---RYSTIEKECYAIVFAL-KQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALE-VFVLVTEKPIDIQAE---------------QNKDLEIS----------------------KIREEIR--KGTNQKY*ISKKLVVIEDFSGK-QLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNIT 8319 D + +L+E + +++ LL +Y+ VFAK + D+G T+++ H I + P++Q IP Y+L +Q+ + R + + I + +RMC+DYR+LN T KD++P P+ E D L ++FT +D GY Q+++ E D KTAF GL+E+ R+PFGL NAP+TFQRLM + D Q +Y++D++I S + E+HL+ + V RL +K+K +KC + + +LGH+V+ EG++ +P+K VV+++ P L ++ FLG YYR+FI +AKIA+P+ L + G KG + +++ W +E +++F +LK LITAP+L Y DF+K F++ +DAS + AVL QE E GK + +AS++LK + YS+++ E A+ +A+ ++F+ Y+ G + TD+ PL L K ++ +WA ++ + I Y+PG N NADALSR H + L L TE+ + +QAE Q +D + +RE IR K + + + + D G+ +V+PQ L++ +L HD GH + +T + +YYW N+ DV++WC C C K K K + + A + P E+ A+DF P T +G +++LV +D F+K+ + PT D+ A TVA+ LV G P ++ +D+G NF S + R+ + + K TT YHPQ +G ERFN TL L + + W ++SQ T+ +N T Sbjct: 288 DSILPQLEHLDERDKERVKALLSKYNRVFAKDDLDVGCTNLMTHEIPLLDETPVRQPYRRIPPSQYELARSHIQQLLQSQVIRESSSPYASPIVLVQKKDG--GLRMCVDYRQLNARTRKDAFPSPRIDESLDALAGAQWFTTLDLASGYSQVEVAEKDKAKTAFCTPFGLFEFNRMPFGLCNAPSTFQRLMERLFGDCRFQSVLLYLDDVIIFSSSVEQHLQRLEQVFSRLDAQGLKVKLSKCHFFQKQVKYLGHVVSAEGVSTDPEKAAVVRDWRRPANLADLRSFLGFASYYRRFIAGFAKIASPLNSLVARLLPPGR-KGKTPKKPVDE-------FWDAECEESFQELKTALITAPVLAYADFQKPFVLEVDASHGGLGAVLSQEHE-GKRRPVAFASRSLKPTERNMNNYSSMKLELVALKWAVTEKFREYLLGNACTVFTDNNPLSHLATAKLGATE-QRWASELAAFDLTIKYRPGSQNANADALSRQHPVLELSGARPLETERVLGVQAEMSTLPGLSPSDLYTLQRQDPVLGPFIKYWERGKMPDARERHGLSKPVRELIRQWKRLREHESVLYRCIYGSDGHGETNQLVLPQSLQESILHSLHDDH--GHQGTERTLQLIRSRYYWPNMYSDVEKWCRTCERCVLSKALQPKVKTYMGSVKA-SRPHEILAIDFTVLDPAT-DGRENVLVMTDVFSKYTQTVPTKDQRASTVAEALVKHWFQLFGPPARIHSDQGRNFESNLVHRLCKFYQIDKSRTTPYHPQGNGQCERFNRTLHDLLRTLPPEQKRRWPRHLSQVTFAYNTT 1086
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000045600.1 (pep primary_assembly:ASM223467v1:4:26167161:26171153:-1 gene:ENSORLG00000023514.1 transcript:ENSORLT00000045600.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 431.024 bits (1107), Expect = 1.018e-124 Identity = 261/815 (32.02%), Postives = 432/815 (53.01%), Query Frame = 1 Query: 6025 DKVKINNNYLNETQQFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIP---YKLREEIKRQIRVKRGRRNKTKFFTMGITHCTS*EN*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDV--QHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQL---RYSTIEKECYAIVFAL-KQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALE-VFVLVTEKPIDIQAE---------------QNKDLEISKIREEIRKG----TNQKY*ISK--------------------KLVVIEDFSGK-QLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNIT 8319 D + +L+E + +++ LL +Y+ VFAK + D+G T+++ H I + P++Q IP Y+L +Q+ + R + + I + +RMC+DYR+LN T KD++P P+ E D L ++FT +D GY Q+++ E D KTAF GL+E+ R+PFGL NAP+TFQRLM + D Q +Y++D++I S + E+HL+ + V RL+ +K+K +KC + + +LGH+V+ EG++ +P+K VV+++ P L ++ FLG YYR+FI +AKIA+P+ L + G KG + +++ W +E +K+F +LK LITAP+L Y +F+K F++ +DAS + AVL QE E G+ + +AS++LK + YS+++ E A+ +A+ ++F+ Y+ G + TD+ PL L K ++ +WA ++ + I Y+PG N NADALSR H + L L TE+ + +QAE Q +D + + +G +++ +SK + + D G+ +V+PQ L++ +L HD GH + +T + +YYW N+ DV++WC C C K K K + + A + P E+ A+DF P T +G +++LV +D F+K+ + PT D+ A TVA+ LV G P ++ +D+G NF S + ++ + + K TT YHPQ +G ERFN TL L + + W ++SQ T+ +N T Sbjct: 288 DSILPQLEHLDERDKERVKALLSKYNRVFAKDDLDVGCTNLMTHEIPLLDETPVRQPYRRIPPSQYELAHSHIQQLLQSQVIRESSSPYASPIVLVQKKDG--GLRMCVDYRQLNARTRKDAFPLPRIDESLDALAGAQWFTTLDLASGYSQVEVAEKDKAKTAFCTPFGLFEFNRMPFGLCNAPSTFQRLMERLFGDCRFQSVLLYLDDVIIFSSSVEQHLQRLEQVFSRLEAQGLKVKLSKCHFFQKQVKYLGHVVSAEGVSTDPEKAAVVRDWRRPANLADLRSFLGFASYYRRFIAGFAKIASPLNSLVARLLPPGR-KGKTPKKPVDE-------FWDAECEKSFQELKTALITAPVLAYANFQKPFVLEVDASHGGLGAVLSQEHE-GRRRPVAFASRSLKPTERNMNNYSSMKLELVALKWAVTEKFREYLLGNACTVFTDNNPLSHLATAKLGATE-QRWASELAAFDLTIKYRPGSQNANADALSRQHPVLELSGARPLETERVLGVQAEMSTLPGLSPSDLYTLQQQDPVLGPFIKYWERGKMPDARERHGLSKPVRELIRQWKRLREHESVLYRYIYGSDGHGETNQLVLPQSLQESILHSLHDDH--GHQGTERTLQLIRSRYYWPNMYSDVEKWCRTCERCVLSKALQPKVKTYMGSVKA-SRPHEILAIDFTVLDPAT-DGRENVLVMTDVFSKYTQTVPTKDQRASTVAEALVKHWFQLFGPPARIHSDQGWNFESNLVHQLCKFYQIDKSRTTPYHPQGNGQCERFNLTLHDLLRTLPPEQKRRWPRHLSQVTFAYNTT 1086
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000019863.1 (SMESG000019863.1) HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0 Identity = 373/978 (38.14%), Postives = 554/978 (56.65%), Query Frame = 1 Query: 5452 IKSTNDTIISMSSHTMQVRGDIELTVHFPSRTVNHVFKVMTECRSKCILWIDILRKLTDGAIKRKVNYQESRXXXXXXXXXXXXXYHCDHIIP---------VKVNVKSEDTLIFEPDKSITKNHNIMLTDECV-IPKNGIIPIRIANYERSNVKIHKGTRLGKLFKGELEQTLEMCETMVLRDDSEQMVELSKTNNVKFYDKVKINNNYLNETQQFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIKRQIRVKRGRRNKTKFFTMGITH--CTS*E--------N*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDVQHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVF--VLVTEKPIDIQAEQNKDLEISKIREEIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNIT 8319 I+ N +I+ S ++ V G I + + + +N V+ + CI+ D++ +L I + E R + I+ VKVN ++ +IFEP+ K + L E V + N IPI I N++ + I++ RLGKL M + + +E E T I++ LNET++ +LQ LL E+ D+FA + DLG +D+ +H I + PI RPY + + +++++ K G+ C+ + R CIDYR+LN VT +D+YP P E L YFT +D GY QI+++E D EKTAF I LY++ ++PFGLTNAPA+FQR MN + ++ C VY++D+LI S TFE+HLKDI NV RL++ ++K+KP+KC WA+ FLGHIV+ +G P+P IE +KN P P T+ QVQ FLGL GYYRKFI++YA IA P+ ELTK K + W E Q AF+ L++KLI+APIL +PDFKK F++ DASG A AVLGQ +++ ++ YS E+E AI+ A+K FK ++G E+ I TDH+PL L +HK+ SSRL++WAM++Q+ I +K G+ N NAD +SR VF ++ +K D++ N SK++E + K +Y + K +++ D K+L+ +P+ R+ +L+QYHDG LGGH+S++KT +RL QKYYW N+ +DVK W C ICATRK+TG+K KAPL P+P PM + AMD + LP T +GN +ILV +DY +K+ EAF D+ A+T+A++LV +I + GTP+++LTD+G NFMSE I+ V N F + K+ T+ YHPQT+G ERFNG L+ ++ +V ++Q DWD Y++ C + ++ Sbjct: 2482 IEEANMDVITCSKESVAVIGKIWSIIEYKNVKINTYLAVIRRLSADCIIGTDLMPELLKEIII-DLGSMELRDKTGRICMLKSEVRCSEKIVVPGRTQMICYVKVNEETRGEMIFEPNHKFEKKKELPLAREIVYVNDNSEIPINITNFDEEDKVIYENERLGKL--------TPMMDIELPTAKTEGTEEELWT----------IDSQLLNETEKEQLQKLLMEFKDIFAASDLDLGTSDVTQHTIPLTDDTPITLRPYRLAEAQKSVAEKEVQ---------KMLDAGVIEPSCSPWQFPVVMVKKKDGTQRFCIDYRRLNAVTKRDTYPLPDINEMLQMLDGAAYFTSLDLKSGYWQIKVKEEDREKTAFTIGKDLYQFKKMPFGLTNAPASFQRCMNFVTHGIKQCMVYIDDLLIYSSTFEQHLKDIRNVFVRLRQWKLKLKPSKCDWAKEKVTFLGHIVSAKGKEPDPRNIEKIKNCPAPKTVTQVQEFLGLCGYYRKFIKNYATIAKPIQELTK--------KDTPFI-------------WEEEQQIAFETLRDKLISAPILVHPDFKKPFLLATDASGYASGAVLGQWDDEKRER--------------NYSVTEREALAIIQAIKHFKYLLWGHEIYITTDHQPLVWLGQHKEASSRLMRWAMQLQEYSPYIKFKSGKANANADCMSRF-------VFEELMDHDKLNDMKIFDNN----SKLKEHMEKH-RHRYTLEKGWLLLMD-GEKRLMCLPESRRKEVLMQYHDGKLGGHMSAKKTEARLRQKYYWPNIGEDVKGWIKNCLICATRKSTGSKLKAPLKPMPIPPEPMTMIAMDVVGPLPETNDGNIYILVVTDYLSKFPEAFAIPDQKARTIARILVEEICCRYGTPKQILTDQGTNFMSEIIEEVTNYFRIAKLRTSPYHPQTNGQTERFNGILIEMMSNYVSRHQKDWDRYINLCLMAYRMS 3383 HSP 2 Score: 263.462 bits (672), Expect = 1.417e-69 Identity = 218/778 (28.02%), Postives = 377/778 (48.46%), Query Frame = 3 Query: 2847 KLMEKEVRELSAEDVNEEVVLRILFTTGINRD--KVITAMAYLIARYKKLLRS-NPKEQINEVAKIIYQRLKADVMPWIKLKGGWKIMYVETLKTSESETMENDDTEEIVKILVNKTTKKPNKSEGKXXXXXXXXXXXXXXXXXRGSNAIIAYDCQNPKLGQKYSLLDVENCPEVNPTKLIVTEPKI-FHVYQESDFIHTEAKECIIKFSEESFVCNQVARTMLVPTWAPEALI-ITPRECEEAFXXXXXXXXXXXXXXAQAGARVKQSVNVVEWTSAGGYCMGGKYKIWGQIADNIVVRRQYYVELRXXXXXXXXXXXXMMTHKFCMLDESSCDTGESMIVYKIDKYECQLTKLKSLKFRTIRGKQFTGAESKRIK---DQKRKT---------VIVQEKDTPTTYMADSEAEAMRFVEKGEAIKCGKAVVKTNYEGIYISSNEIKDAKLKIDKFDVKLSSYFNNKIDYFYHHQLVQLDKVYQATITNDCKLNREILRTKMAVAVTNPDLMAPILFAEKGTFARVVGEVLQTFQCKPVSVSLATN-----NQCTNELPVISKGETVYLQPITRILTDKTYIPRKIDKCTNLLDPLYQLNDEMWITMSDRKEAXXXXXXXXXXXXXXXXXQEINDMNNNGMYTRDAIESARKHMLFPNEKEKILSIMVSKVMEGSHGGDYNFDVLLSKEHFKKVVYKVLYSIWGYFAVLGNMFSTILGIYYTVALLKMICSSLVS----LRQLRQVFGNSYKMLACLCPFVAKYLITAKHDKEIRLIK 5102 K+M+ +VR + + EE++L I T + D + + MAYL+ + R P+ N I ++ + P+I +GGW+ K ++E M+ E + + P + + ++ II I + + ++G + YDC N K+G KYSL + E C NP KL T + ++VYQE DFI TE KEC + +F C + + ++ ++ +T ECEE F T +I + + A+ G V GK W + N+ RR + +E S+S+ +++ + SC+TG S IVY D C+LT LKS F ++G+ + E+ K D+ R+T + + TPT ++ MRF++ KC + V TNY+GI++S I +AK +ID KI EIL+TK+A+ +TNPD P+L ++G F R+VGEV+ T++C+ L N ++C NEL ++ KG+ + QP+TR++ + ++P C+N+ PL+++ D W+ R P LTEL + EF+ + D++ +G+Y +E AR+H+LFP +++ ILS +V+ ++G N+++LLS +HF+ ++ ++WG F + G M + ILGI + ++++I + +++ ++ R++ ++KM PF+AK ++ H K+I IK Sbjct: 1571 KIMDNKVRTTTKDP--EELLLIINHLTKRSEDPNRYLVGMAYLMYNTIVIYRKRTPRYNPNGYEFAITDIIRKIIDPFILTQGGWQAFINLVSKDDQTEIMQTKLKELLTEFETTINASDPKTA--RKGMNAIITTILIWMMCVKGVEPFVVYDCDNIKIGDKYSLKETEECKAANPGKLQTTATAVSYNVYQEVDFIKTEIKECSVTRKIVAFHCGHHSHSTIIEAGTETTVVSVTRNECEEGFTTGRISIAGRVNVAAEEGKIKTTRVYA-----------AGKDNGWRR---NVSRRRVHLIE---------STSQGSSSNRKLPTTDRSCNTGMSTIVYHADTRTCRLTLLKSAIFDEVQGRVHSETETNTQKSALDELRRTGRIGKPTITTTIGSEVTPTVVISTDTTIGMRFIKGRMVSKCDEMVASTNYKGIFLSRTAIPNAKAQIDP-----------KI---------------------------EILKTKLAMGITNPDNAIPLLPLQEGYFGRIVGEVMYTYKCEKTIAKLPENSTIPRDKCINELEIMHKGKIRFAQPVTRMINPEKFVPNMFS-CSNVYGPLFEIRDGSWLQFPTRVIVAPPKIFGLTELASEAEFKPV-DISQSGIYQTKDLERAREHLLFPAQRQAILSNIVTITGGNNYGEKPNYELLLSPDHFQHATANMMKAMWGRFLIFGQMMAGILGIILIIQIVRVILTQMLACFDIYKRERKI---NWKMAIGFLPFLAKTMVLHGHSKDIHKIK 2278 HSP 3 Score: 56.6102 bits (135), Expect = 5.185e-7 Identity = 51/177 (28.81%), Postives = 76/177 (42.94%), Query Frame = 1 Query: 661 EPYRGEPEKFDDFFTEITQYADACGWTPDELKRRIPLYLKGYALQAYNNLECRGNNLDQLIENLRAEIVIDSDLQKIN--VQKFRNRYQGSRESVGEYVYTITELAKKAFGAGEHTPKLIEDQFWNGIQKYLYKA-LIMVEYRDLNELVHKAKRVEAIQRDRFNASIDAVEIQRPTM 1182 EP+ G K D F E Y + C WT ++K R+PLYLKG A + L E + I +K N + F +R Q ES Y + +L K+AFG + + D F GI++ +A L + L++ V A R EA + ++ A E T+ Sbjct: 36 EPFDGSLNKLDTFIKEFEVYKNICHWTDQKVKERLPLYLKGSAQDVFVEEARDVTKLTTWTEIKEFLVKIFGIEKKGNRKILDFLHRKQRRDESNAVYACELKKLCKEAFGESDLPEDKMVDVFIRGIKREDIRANLGCLAPETLDKAVAIANRCEAHLGLGYQVAVLATEPTTSTV 212
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000019863.1 (SMESG000019863.1) HSP 1 Score: 651.744 bits (1680), Expect = 0.000e+0 Identity = 373/978 (38.14%), Postives = 554/978 (56.65%), Query Frame = 1 Query: 5452 IKSTNDTIISMSSHTMQVRGDIELTVHFPSRTVNHVFKVMTECRSKCILWIDILRKLTDGAIKRKVNYQESRXXXXXXXXXXXXXYHCDHIIP---------VKVNVKSEDTLIFEPDKSITKNHNIMLTDECV-IPKNGIIPIRIANYERSNVKIHKGTRLGKLFKGELEQTLEMCETMVLRDDSEQMVELSKTNNVKFYDKVKINNNYLNETQQFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIKRQIRVKRGRRNKTKFFTMGITH--CTS*E--------N*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDVQHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVF--VLVTEKPIDIQAEQNKDLEISKIREEIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNIT 8319 I+ N +I+ S ++ V G I + + + +N V+ + CI+ D++ +L I + E R + I+ VKVN ++ +IFEP+ K + L E V + N IPI I N++ + I++ RLGKL M + + +E E T I++ LNET++ +LQ LL E+ D+FA + DLG +D+ +H I + PI RPY + + +++++ K G+ C+ + R CIDYR+LN VT +D+YP P E L YFT +D GY QI+++E D EKTAF I LY++ ++PFGLTNAPA+FQR MN + ++ C VY++D+LI S TFE+HLKDI NV RL++ ++K+KP+KC WA+ FLGHIV+ +G P+P IE +KN P P T+ QVQ FLGL GYYRKFI++YA IA P+ ELTK K + W E Q AF+ L++KLI+APIL +PDFKK F++ DASG A AVLGQ +++ ++ YS E+E AI+ A+K FK ++G E+ I TDH+PL L +HK+ SSRL++WAM++Q+ I +K G+ N NAD +SR VF ++ +K D++ N SK++E + K +Y + K +++ D K+L+ +P+ R+ +L+QYHDG LGGH+S++KT +RL QKYYW N+ +DVK W C ICATRK+TG+K KAPL P+P PM + AMD + LP T +GN +ILV +DY +K+ EAF D+ A+T+A++LV +I + GTP+++LTD+G NFMSE I+ V N F + K+ T+ YHPQT+G ERFNG L+ ++ +V ++Q DWD Y++ C + ++ Sbjct: 2482 IEEANMDVITCSKESVAVIGKIWSIIEYKNVKINTYLAVIRRLSADCIIGTDLMPELLKEIII-DLGSMELRDKTGRICMLKSEVRCSEKIVVPGRTQMICYVKVNEETRGEMIFEPNHKFEKKKELPLAREIVYVNDNSEIPINITNFDEEDKVIYENERLGKL--------TPMMDIELPTAKTEGTEEELWT----------IDSQLLNETEKEQLQKLLMEFKDIFAASDLDLGTSDVTQHTIPLTDDTPITLRPYRLAEAQKSVAEKEVQ---------KMLDAGVIEPSCSPWQFPVVMVKKKDGTQRFCIDYRRLNAVTKRDTYPLPDINEMLQMLDGAAYFTSLDLKSGYWQIKVKEEDREKTAFTIGKDLYQFKKMPFGLTNAPASFQRCMNFVTHGIKQCMVYIDDLLIYSSTFEQHLKDIRNVFVRLRQWKLKLKPSKCDWAKEKVTFLGHIVSAKGKEPDPRNIEKIKNCPAPKTVTQVQEFLGLCGYYRKFIKNYATIAKPIQELTK--------KDTPFI-------------WEEEQQIAFETLRDKLISAPILVHPDFKKPFLLATDASGYASGAVLGQWDDEKRER--------------NYSVTEREALAIIQAIKHFKYLLWGHEIYITTDHQPLVWLGQHKEASSRLMRWAMQLQEYSPYIKFKSGKANANADCMSRF-------VFEELMDHDKLNDMKIFDNN----SKLKEHMEKH-RHRYTLEKGWLLLMD-GEKRLMCLPESRRKEVLMQYHDGKLGGHMSAKKTEARLRQKYYWPNIGEDVKGWIKNCLICATRKSTGSKLKAPLKPMPIPPEPMTMIAMDVVGPLPETNDGNIYILVVTDYLSKFPEAFAIPDQKARTIARILVEEICCRYGTPKQILTDQGTNFMSEIIEEVTNYFRIAKLRTSPYHPQTNGQTERFNGILIEMMSNYVSRHQKDWDRYINLCLMAYRMS 3383 HSP 2 Score: 263.848 bits (673), Expect = 1.223e-69 Identity = 218/778 (28.02%), Postives = 377/778 (48.46%), Query Frame = 3 Query: 2847 KLMEKEVRELSAEDVNEEVVLRILFTTGINRD--KVITAMAYLIARYKKLLRS-NPKEQINEVAKIIYQRLKADVMPWIKLKGGWKIMYVETLKTSESETMENDDTEEIVKILVNKTTKKPNKSEGKXXXXXXXXXXXXXXXXXRGSNAIIAYDCQNPKLGQKYSLLDVENCPEVNPTKLIVTEPKI-FHVYQESDFIHTEAKECIIKFSEESFVCNQVARTMLVPTWAPEALI-ITPRECEEAFXXXXXXXXXXXXXXAQAGARVKQSVNVVEWTSAGGYCMGGKYKIWGQIADNIVVRRQYYVELRXXXXXXXXXXXXMMTHKFCMLDESSCDTGESMIVYKIDKYECQLTKLKSLKFRTIRGKQFTGAES---KRIKDQKRKT---------VIVQEKDTPTTYMADSEAEAMRFVEKGEAIKCGKAVVKTNYEGIYISSNEIKDAKLKIDKFDVKLSSYFNNKIDYFYHHQLVQLDKVYQATITNDCKLNREILRTKMAVAVTNPDLMAPILFAEKGTFARVVGEVLQTFQCKPVSVSLATN-----NQCTNELPVISKGETVYLQPITRILTDKTYIPRKIDKCTNLLDPLYQLNDEMWITMSDRKEAXXXXXXXXXXXXXXXXXQEINDMNNNGMYTRDAIESARKHMLFPNEKEKILSIMVSKVMEGSHGGDYNFDVLLSKEHFKKVVYKVLYSIWGYFAVLGNMFSTILGIYYTVALLKMICSSLVS----LRQLRQVFGNSYKMLACLCPFVAKYLITAKHDKEIRLIK 5102 K+M+ +VR + + EE++L I T + D + + MAYL+ + R P+ N I ++ + P+I +GGW+ K ++E M+ E + + P + + ++ II I + + ++G + YDC N K+G KYSL + E C NP KL T + ++VYQE DFI TE KEC + +F C + + ++ ++ +T ECEE F T +I + + A+ G V GK W + N+ RR + +E S+S+ +++ + SC+TG S IVY D C+LT LKS F ++G+ + E+ K D+ R+T + + TPT ++ MRF++ KC + V TNY+GI++S I +AK +ID KI EIL+TK+A+ +TNPD P+L ++G F R+VGEV+ T++C+ L N ++C NEL ++ KG+ + QP+TR++ + ++P C+N+ PL+++ D W+ R P LTEL + EF+ + D++ +G+Y +E AR+H+LFP +++ ILS +V+ ++G N+++LLS +HF+ ++ ++WG F + G M + ILGI + ++++I + +++ ++ R++ ++KM PF+AK ++ H K+I IK Sbjct: 1571 KIMDNKVRTTTKDP--EELLLIINHLTKRSEDPNRYLVGMAYLMYNTIVIYRKRTPRYNPNGYEFAITDIIRKIIDPFILTQGGWQAFINLVSKDDQTEIMQTKLKELLTEFETTINASDPKTA--RKGMNAIITTILIWMMCVKGVEPFVVYDCDNIKIGDKYSLKETEECKAANPGKLQTTATAVSYNVYQEVDFIKTEIKECSVTRKIVAFHCGHHSHSTIIEAGTETTVVSVTRNECEEGFTTGRISIAGRVNVAAEEGKIKTTRVYA-----------AGKDNGWRR---NVSRRRVHLIE---------STSQGSSSNRKLPTTDRSCNTGMSTIVYHADTRTCRLTLLKSAIFDEVQGRVHSETETNTQKSALDELRRTGRIGKPTITTTIGSEVTPTVVISTDTTIGMRFIKGRMVSKCDEMVASTNYKGIFLSRTAIPNAKAQIDP-----------KI---------------------------EILKTKLAMGITNPDNAIPLLPLQEGYFGRIVGEVMYTYKCEKTIAKLPENSTIPRDKCINELEIMHKGKIRFAQPVTRMINPEKFVPNMFS-CSNVYGPLFEIRDGSWLQFPTRVIVAPPKIFGLTELASEAEFKPV-DISQSGIYQTKDLERAREHLLFPAQRQAILSNIVTITGGNNYGEKPNYELLLSPDHFQHATANMMKAMWGRFLIFGQMMAGILGIILIIQIVRVILTQMLACFDIYKRERKI---NWKMAIGFLPFLAKTMVLHGHSKDIHKIK 2278 HSP 3 Score: 56.6102 bits (135), Expect = 5.139e-7 Identity = 51/177 (28.81%), Postives = 76/177 (42.94%), Query Frame = 1 Query: 661 EPYRGEPEKFDDFFTEITQYADACGWTPDELKRRIPLYLKGYALQAYNNLECRGNNLDQLIENLRAEIVIDSDLQKIN--VQKFRNRYQGSRESVGEYVYTITELAKKAFGAGEHTPKLIEDQFWNGIQKYLYKA-LIMVEYRDLNELVHKAKRVEAIQRDRFNASIDAVEIQRPTM 1182 EP+ G K D F E Y + C WT ++K R+PLYLKG A + L E + I +K N + F +R Q ES Y + +L K+AFG + + D F GI++ +A L + L++ V A R EA + ++ A E T+ Sbjct: 36 EPFDGSLNKLDTFIKEFEVYKNICHWTDQKVKERLPLYLKGSAQDVFVEEARDVTKLTTWTEIKEFLVKIFGIEKKGNRKILDFLHRKQRRDESNAVYACELKKLCKEAFGESDLPEDKMVDVFIRGIKREDIRANLGCLAPETLDKAVAIANRCEAHLGLGYQVAVLATEPTTSTV 212
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000019863.1 (SMESG000019863.1) HSP 1 Score: 651.358 bits (1679), Expect = 0.000e+0 Identity = 373/978 (38.14%), Postives = 554/978 (56.65%), Query Frame = 1 Query: 5452 IKSTNDTIISMSSHTMQVRGDIELTVHFPSRTVNHVFKVMTECRSKCILWIDILRKLTDGAIKRKVNYQESRXXXXXXXXXXXXXYHCDHIIP---------VKVNVKSEDTLIFEPDKSITKNHNIMLTDECV-IPKNGIIPIRIANYERSNVKIHKGTRLGKLFKGELEQTLEMCETMVLRDDSEQMVELSKTNNVKFYDKVKINNNYLNETQQFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIKRQIRVKRGRRNKTKFFTMGITH--CTS*E--------N*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDVQHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRIHELGALEVF--VLVTEKPIDIQAEQNKDLEISKIREEIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNIT 8319 I+ N +I+ S ++ V G I + + + +N V+ + CI+ D++ +L I + E R + I+ VKVN ++ +IFEP+ K + L E V + N IPI I N++ + I++ RLGKL M + + +E E T I++ LNET++ +LQ LL E+ D+FA + DLG +D+ +H I + PI RPY + + +++++ K G+ C+ + R CIDYR+LN VT +D+YP P E L YFT +D GY QI+++E D EKTAF I LY++ ++PFGLTNAPA+FQR MN + ++ C VY++D+LI S TFE+HLKDI NV RL++ ++K+KP+KC WA+ FLGHIV+ +G P+P IE +KN P P T+ QVQ FLGL GYYRKFI++YA IA P+ ELTK K + W E Q AF+ L++KLI+APIL +PDFKK F++ DASG A AVLGQ +++ ++ YS E+E AI+ A+K FK ++G E+ I TDH+PL L +HK+ SSRL++WAM++Q+ I +K G+ N NAD +SR VF ++ +K D++ N SK++E + K +Y + K +++ D K+L+ +P+ R+ +L+QYHDG LGGH+S++KT +RL QKYYW N+ +DVK W C ICATRK+TG+K KAPL P+P PM + AMD + LP T +GN +ILV +DY +K+ EAF D+ A+T+A++LV +I + GTP+++LTD+G NFMSE I+ V N F + K+ T+ YHPQT+G ERFNG L+ ++ +V ++Q DWD Y++ C + ++ Sbjct: 2374 IEEANMDVITCSKESVAVIGKIWSIIEYKNVKINTYLAVIRRLSADCIIGTDLMPELLKEIII-DLGSMELRDKTGRICMLKSEVRCSEKIVVPGRTQMICYVKVNEETRGEMIFEPNHKFEKKKELPLAREIVYVNDNSEIPINITNFDEEDKVIYENERLGKL--------TPMMDIELPTAKTEGTEEELWT----------IDSQLLNETEKEQLQKLLMEFKDIFAASDLDLGTSDVTQHTIPLTDDTPITLRPYRLAEAQKSVAEKEVQ---------KMLDAGVIEPSCSPWQFPVVMVKKKDGTQRFCIDYRRLNAVTKRDTYPLPDINEMLQMLDGAAYFTSLDLKSGYWQIKVKEEDREKTAFTIGKDLYQFKKMPFGLTNAPASFQRCMNFVTHGIKQCMVYIDDLLIYSSTFEQHLKDIRNVFVRLRQWKLKLKPSKCDWAKEKVTFLGHIVSAKGKEPDPRNIEKIKNCPAPKTVTQVQEFLGLCGYYRKFIKNYATIAKPIQELTK--------KDTPFI-------------WEEEQQIAFETLRDKLISAPILVHPDFKKPFLLATDASGYASGAVLGQWDDEKRER--------------NYSVTEREALAIIQAIKHFKYLLWGHEIYITTDHQPLVWLGQHKEASSRLMRWAMQLQEYSPYIKFKSGKANANADCMSRF-------VFEELMDHDKLNDMKIFDNN----SKLKEHMEKH-RHRYTLEKGWLLLMD-GEKRLMCLPESRRKEVLMQYHDGKLGGHMSAKKTEARLRQKYYWPNIGEDVKGWIKNCLICATRKSTGSKLKAPLKPMPIPPEPMTMIAMDVVGPLPETNDGNIYILVVTDYLSKFPEAFAIPDQKARTIARILVEEICCRYGTPKQILTDQGTNFMSEIIEEVTNYFRIAKLRTSPYHPQTNGQTERFNGILIEMMSNYVSRHQKDWDRYINLCLMAYRMS 3275 HSP 2 Score: 178.333 bits (451), Expect = 7.622e-44 Identity = 100/304 (32.89%), Postives = 181/304 (59.54%), Query Frame = 3 Query: 4218 QLVQLDKVYQATITNDCKLNREILRTKMAVAVTNPDLMAPILFAEKGTFARVVGEVLQTFQCKPVSVSLATN-----NQCTNELPVISKGETVYLQPITRILTDKTYIPRKIDKCTNLLDPLYQLNDEMWITMSDRKEAXXXXXXXXXXXXXXXXXQEINDMNNNGMYTRDAIESARKHMLFPNEKEKILSIMVSKVMEGSHGGDYNFDVLLSKEHFKKVVYKVLYSIWGYFAVLGNMFSTILGIYYTVALLKMICSSLVS----LRQLRQVFGNSYKMLACLCPFVAKYLITAKHDKEIRLIK 5102 +L +K+Y + NDC LNREIL+TK+A+ +TNPD P+L ++G F R+VGEV+ T++C+ L N ++C NEL ++ KG+ + QP+TR++ + ++P C+N+ PL+++ D W+ R P LTEL + EF+ + D++ +G+Y +E AR+H+LFP +++ ILS +V+ ++G N+++LLS +HF+ ++ ++WG F + G M + ILGI + ++++I + +++ ++ R++ ++KM PF+AK ++ H K+I IK Sbjct: 1872 RLASTEKIYYDLVKNDCILNREILKTKLAMGITNPDNAIPLLPLQEGYFGRIVGEVMYTYKCEKTIAKLPENSTIPRDKCINELEIMHKGKIRFAQPVTRMINPEKFVPNMFS-CSNVYGPLFEIRDGSWLQFPTRVIVAPPKIFGLTELASEAEFKPV-DISQSGIYQTKDLERAREHLLFPAQRQAILSNIVTITGGNNYGEKPNYELLLSPDHFQHATANMMKAMWGRFLIFGQMMAGILGIILIIQIVRVILTQMLACFDIYKRERKI---NWKMAIGFLPFLAKTMVLHGHSKDIHKIK 2170 HSP 3 Score: 81.2629 bits (199), Expect = 1.858e-14 Identity = 69/245 (28.16%), Postives = 116/245 (47.35%), Query Frame = 3 Query: 2847 KLMEKEVRELSAEDVNEEVVLRILFTTGINRD--KVITAMAYLIARYKKLLRS-NPKEQINEVAKIIYQRLKADVMPWIKLKGGWKIMYVETLKTSESETMENDDTEEIVKILVNKTTKKPNKSEGKXXXXXXXXXXXXXXXXXRGSNAIIAYDCQNPKLGQKYSLLDVENCPEVNPTKLIVTEPKI-FHVYQESDFIHTEAKECIIKFSEESFVCNQVARTMLVPTWAPEALI-ITPRECEEAF 3566 K+M+ +VR + + EE++L I T + D + + MAYL+ + R P+ N I ++ + P+I +GGW+ K ++E M+ E + + P + + ++ II I + + ++G + YDC N K+G KYSL + E C NP KL T + ++VYQE DFI TE KEC + +F C + + ++ ++ +T ECEE F Sbjct: 1571 KIMDNKVRTTTKDP--EELLLIINHLTKRSEDPNRYLVGMAYLMYNTIVIYRKRTPRYNPNGYEFAITDIIRKIIDPFILTQGGWQAFINLVSKDDQTEIMQTKLKELLTEFETTINASDPKTA--RKGMNAIITTILIWMMCVKGVEPFVVYDCDNIKIGDKYSLKETEECKAANPGKLQTTATAVSYNVYQEVDFIKTEIKECSVTRKIVAFHCGHHSHSTIIEAGTETTVVSVTRNECEEGF 1811 HSP 4 Score: 56.6102 bits (135), Expect = 5.221e-7 Identity = 51/177 (28.81%), Postives = 76/177 (42.94%), Query Frame = 1 Query: 661 EPYRGEPEKFDDFFTEITQYADACGWTPDELKRRIPLYLKGYALQAYNNLECRGNNLDQLIENLRAEIVIDSDLQKIN--VQKFRNRYQGSRESVGEYVYTITELAKKAFGAGEHTPKLIEDQFWNGIQKYLYKA-LIMVEYRDLNELVHKAKRVEAIQRDRFNASIDAVEIQRPTM 1182 EP+ G K D F E Y + C WT ++K R+PLYLKG A + L E + I +K N + F +R Q ES Y + +L K+AFG + + D F GI++ +A L + L++ V A R EA + ++ A E T+ Sbjct: 36 EPFDGSLNKLDTFIKEFEVYKNICHWTDQKVKERLPLYLKGSAQDVFVEEARDVTKLTTWTEIKEFLVKIFGIEKKGNRKILDFLHRKQRRDESNAVYACELKKLCKEAFGESDLPEDKMVDVFIRGIKREDIRANLGCLAPETLDKAVAIANRCEAHLGLGYQVAVLATEPTTSTV 212
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000012882.1 (SMESG000012882.1) HSP 1 Score: 628.632 bits (1620), Expect = 1.309e-180 Identity = 371/988 (37.55%), Postives = 546/988 (55.26%), Query Frame = 1 Query: 5452 IKSTNDTIISMSSHTMQVRGDIELTVHFPSRTVNHVFKVMTECRSKCILWIDILRKLTDGAIKRKVNYQESRXXXXXXXXXXXXXYHCDHIIP---------VKVNVKSEDTLIFEPDKSITKNHNIMLTDECV-IPKNGIIPIRIANYERSNVKIHKGTRLGKLFKGELEQTLEMCETMVLRDDSEQMVELSKTNNVKFYDKV-KINNNYLNETQQFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIKRQIRVKRGRRNKTKFFTMGITH--CTS*E--------N*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDVQHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRI--HELGALEV--FVLVTEKPID---IQAEQNKDLEISKIREEIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKL----RQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNIT 8319 I+ N +I+ S ++ V G I + + + +N V+ + CI+ D++ +L I + E R + I+ VKVN ++ +IFEP+ K + L E V + N IPI I N++ + I++ RLGKL + D +EL T +++ I++ LNE ++ +LQ LL E+ D+FA + DLG +D+ +H I + PI RPY + + E +++++ K G+ C+ + R CIDYR+LN VT +D+YP P E L YFT +D GY QI+++E D EKTAF I LY++ ++PFGLTNAPA+FQR MN + ++ C VY++D+LI S TFE+HLKDI N FLGHIV+ +G P+P IE +KN P P T+ QVQ FLGL GYYRKFI++YA IA P+ ELTK K + W E Q AF+ L++KLI+APIL +PDFKK F++ DASG A AVLGQ +++ ++ VI Y S+T K + YS E+E AI+ A+K FK ++G E+ I TDH+PL L +HK+ SSRL++WAM++Q+ I +K G+ N NAD +SR EL +V ++ + ID ++ EQ +D E+ I E + + + + KL I + I +P K R+ +L+QYHDG LGGH+S++KT +RL QKYYW N+ +DVK W C ICATRK+TG+K KAPL P+P PM + AMD + LP T +GN +ILV +DY +K+ EAF D+ A+T+A++LV +I + GTP+++LTD+G NFMSE I+ V N F + K+ T+ YHPQT+G ERFNG L+ ++ +V ++Q DWD Y++ C + ++ Sbjct: 474 IEEANMDVITCSKESVAVIGKIWSIIEYKNVKINTYLAVIRRLSADCIIGTDLMPELLKEIII-DLGSMELRDKTGRICMLKSEVRCSEKIVVPGRTQMICYVKVNEETRGEMIFEPNHKFEKKKELPLAREIVYVNDNSEIPINITNFDEEDKVIYENERLGKL--------------TPMMD-----IELPTTKTEGTEEELWTIDSQLLNEVEKEQLQKLLTEFKDIFAASDLDLGTSDVTQHTIPLTDDTPITLRPYRLAEAQKSEAEKEVQ---------KMLDAGVIEPSCSPWQFPVVMVKKKDGTQRFCIDYRRLNAVTKRDTYPLPDINEMLQTLHGAAYFTSLDLKSGYWQIKVKEEDREKTAFTIGKDLYQFKKMPFGLTNAPASFQRCMNFVTHGIKQCMVYIDDLLIYSSTFEQHLKDIRN---------------------EKVTFLGHIVSAKGKEPDPRNIEKIKNCPAPKTVTQVQEFLGLCGYYRKFIKNYATIAKPIQELTK--------KDTPFI-------------WEKEQQTAFETLRDKLISAPILVHPDFKKPFLLATDASGYASGAVLGQWDDEKRERVIGYYSRTFKKHEKNYSVTEREALAIIQAIKHFKYLLWGHEIYITTDHQPLVWLGQHKEASSRLMRWAMQLQEYSPYIKFKSGKANANADCMSRFVFEELMDHDVRRICMIIAEDIDFTKLRNEQKEDEELKTIIEFMETNDMKIFDNNSKLKSIWRNTD---IDIPWKRDESRRKEVLMQYHDGKLGGHMSAKKTEARLRQKYYWPNIGEDVKGWIKNCLICATRKSTGSKLKAPLKPMPIPPEPMTMIAMDVVGPLPETNDGNIYILVVTDYLSKFPEAFAIPDQKARTIARILVEEICCRYGTPKQILTDQGTNFMSEIIEEVTNYFRIAKLRTSPYHPQTNGQTERFNGILIEMMSNYVSRHQKDWDRYINLCLMAYRMS 1387 HSP 2 Score: 142.895 bits (359), Expect = 3.944e-33 Identity = 86/275 (31.27%), Postives = 161/275 (58.55%), Query Frame = 3 Query: 4305 VAVTNPDLMAPILFAEKGTFARVVGEVLQTFQCKPVSVSLATN-----NQCTNELPVISKGETVYLQPITRILTDKTYIPRKIDKCTNLLDPLYQLNDEMWITMSDRKEAXXXXXXXXXXXXXXXXXQEINDMNNNGMYTRDAIESARKHMLFPNEKEKILSIMVSKVMEGSHGGDYNFDVLLSKEHFKKVVYKVLYSIWGYFAVLGNMFSTILGIYYTVALLKMICSSLVS----LRQLRQVFGNSYKMLACLCPFVAKYLITAKHDKEIRLIK 5102 +A+TNPD P+L ++G F R+VGEV+ T++C+ L N ++C NEL ++ KG+ + QP+TR++ + ++P C+N+ PL+++ D W+ R P LTEL + EF+ + D++ +G+Y +E AR+H+LFP +++ ILS +V+ ++G N+++LLS +HF+ ++ ++WG F + G M + ILGI + ++++I + +++ ++ R++ ++KM PF+AK ++ H K+I IK Sbjct: 1 MAITNPDNAIPLLPLQEGYFGRIVGEVMYTYKCEKTIAKLPENSTIPRDKCINELEIMHKGKIRFAQPVTRMINPEKFVPNMFS-CSNVYGPLFEIRDGSWLQFPTRVIVAPPKIFGLTELASEAEFKPV-DISQSGIYQTKDLERAREHLLFPAQRQAILSNIVTITGGNNYGEKPNYELLLSPDHFQHATANMMKAMWGRFLIFGQMMAGILGIILIIQIIRVILTQMLACFDIYKRERKI---NWKMAIGFLPFLAKTMVLHGHSKDIHKIK 270
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000069191.1 (SMESG000069191.1) HSP 1 Score: 625.165 bits (1611), Expect = 3.062e-179 Identity = 370/1002 (36.93%), Postives = 550/1002 (54.89%), Query Frame = 1 Query: 5452 IKSTNDTIISMSSHTMQVRGDIELTVHFPSRTVNHVFKVMTECRSKCILWIDILRKLTDGAIKRKVNYQESRXXXXXXXXXXXXXYHCDHIIP---------VKVNVKSEDTLIFEPDKSITKNHNIMLTDECV-IPKNGIIPIRIANYERSNVKIHKGTRLGKLFKGELEQTLEMCETMVLRDDSEQMVELSKTNNVKFYDKV-KINNNYLNETQQFKLQTLLDEYSDVFAKHEFDLGDTDIIKHVIDTGNARPIKQRPYGIPYKLREEIKRQIRVKRGRRNKTKFFTMGITH--CTS*E--------N*NEIRMCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEEGDAEKTAFVIEDGLYEYTRLPFGLTNAPATFQRLMNTILVDVQHCAVYMEDILIASKTFEEHLKDIANVLQRLKKARIKIKPTKCKWAEPSALFLGHIVTVEGITPNPDKIEVVKNFPVPTTLQQVQGFLGLTGYYRKFIQDYAKIAAPMIELTKGVKTKGESKGVLIVQTINDKINKPQKKWTSEHQKAFDQLKEKLITAPILRYPDFKKQFIVMMDASGKAVEAVLGQEEEKGKDYVITYASKTLKGAQLRYSTIEKECYAIVFALKQFKPYIYGTEVVIRTDHKPLEGLWKHKDTSSRLLKWAMKIQDMHIKIIYKPGRINKNADALSRI--HELGALEV--FVLVTEKPID---IQAEQNKDLEI------------------SKIREEIRKGTNQKY*ISKKLVVIEDFSGKQLIVVPQKLRQILLLQYHDGALGGHLSSRKTASRLLQKYYWDNLKKDVKRWCNACTICATRKNTGTKTKAPLHPIPATTSPMELCAMDFLCKLPTTINGNKHILVFSDYFTKWAEAFPT*DETAKTVAKLLVAKIIFKIGTPRKLLTDKGANFMSETIKRVANMFNMHKINTTAYHPQTDGLVERFNGTLLSRLAVFVGKNQNDWDEYVSQCTYIHNIT 8319 IK N +I+ S ++ V G I + + + +N V+ + CI+ D++ +L I + E R + I+ VKVN ++ +IFEP+ K + L E V + N IPI I N++ + I++ RLGKL + D +EL T +++ I++ LNET++ +L E+ D+FA + DLG +D+ +H I + PI RPY + + +++++ K G+ C+ + R CIDYR+LN VT +D+YP P E L YFT +D GY QI+++E D EKTAF I LY++ ++PF LTNAPA+FQR MN + D++ C V++ D+LI S TFE+HLKDI NV RL++ ++K+K +KC W + FL HIV+ +G P+P IE +KN+PVP T+ QV+ FLGL GYYRKFI+ YA IA P+ ELTK K + W E Q AF+ L++KLI+APIL +PDFKK F++ DASG E +T K + YS E+E AI+ A+K FK ++G E+ I TDH+PL L +HK+ SSRL++WAM++Q+ I +K + N NAD LSR EL +V ++ + ID ++ EQ +D E+ SK+RE + K +Y I K +++ D K+L+ +P+ R+ +L+QYHDG LGGH+S++KT +RL QKYYW N+ +DVK W C ICATRK+TG+K KAPL P+P PM + AMD + LP T +GN +ILV +DY +K+ EAF D+ A+T+A++LV +I + GTP+++LTD+G NFMSE I+ V N F + K+ T+ YHPQT+G ERFNG L+ ++ +V ++Q DWD Y++ C + ++ Sbjct: 2871 IKEANMDVITCSKESVAVIGKIWSIIEYKNVKINTYLAVIRRLSADCIIGTDLMPELLKEIII-DLGSMELRDKTGRICMLKSEVRCSEKIVVPGRTQMICYVKVNEETRGEMIFEPNHKFEKKKELPLAREIVYVNDNSEIPINITNFDEEDKVIYENERLGKL--------------TPMMD-----IELPATKTEGTEEELWTIDSQLLNETEKEQLM----EFKDIFAASDLDLGTSDVTQHTISLTDDTPITLRPYRLAEAQKSVAEKEVQ---------KMLDAGVIEPSCSPWQFPVVMVKKKDGTQRFCIDYRRLNAVTKRDTYPLPDINEMLQTLHGAAYFTSLDLKSGYWQIKVKEEDREKTAFTIGKDLYQFKKMPFRLTNAPASFQRCMNFVTHDIKQCMVFI-DLLIYSSTFEQHLKDIRNVFVRLRQWKLKLKRSKCDWTKEKVTFLEHIVSAKGKEPDPRNIEKIKNYPVPKTVTQVKEFLGLCGYYRKFIKSYATIAKPIQELTK--------KDTPFI-------------WEKEQQTAFETLRDKLISAPILVHPDFKKPFLLATDASGYDRE------------------HRTFKKHEKNYSVTEREALAIIQAIKHFKYLLWGHEIYIITDHQPLVWLGQHKEASSRLMRWAMQLQEYSPYIKFKSRKANANADCLSRFVFEELMDQDVRRICMIIAEDIDFTKLRNEQKEDEELKTIIEFMETNDMKIFDNNSKLREHMEKH-RHRYTIEKGWLLLMD-GEKRLMCLPESRRKEVLMQYHDGKLGGHMSAKKTEARLRQKYYWPNIGEDVKGWIKNCLICATRKSTGSKLKAPLKPMPIPPEPMTMIAMDVVGPLPETNDGNIYILVVTDYLSKFPEAFAIPDQKARTIARILVDEICCRYGTPKQILTDQGTNFMSEIIEEVTNYFRIAKLRTSPYHPQTNGQTERFNGILIEMMSNYVSRHQKDWDRYINLCLMAYRMS 3797 HSP 2 Score: 298.13 bits (762), Expect = 4.911e-80 Identity = 229/782 (29.28%), Postives = 390/782 (49.87%), Query Frame = 3 Query: 2847 KLMEKEVRELSAEDVNEEVVLRILFTTGINRD--KVITAMAYL----IARYKKLLRSNPKEQINEVAKIIYQRLKADVMPWIKLKGGWKIMYVETLKTSESETMENDDTEEIVKILVNKTTKKPNKSEGKXXXXXXXXXXXXXXXXXRGSNAIIAYDCQNPKLGQKYSLLDVENCPEVNPTKLIVTEPKI-FHVYQESDFIHTEAKECIIKFSEESFVCNQVARTMLVPTWAPEALI-ITPRECEEAFXXXXXXXXXXXXXXAQAGARVKQSVNVVEWTSAG-GYCMGGKYKIWGQIADNIVVRRQYYVELRXXXXXXXXXXXXMMTHKFCMLDESSCDTGESMIVYKIDKYECQLTKLKSLKFRTIRGKQFTGAESK---RIKDQKRKT---------VIVQEKDTPTTYMADSEAEAMRFVEKGEAIKCGKAVVKTNYEGIYISSNEIKDAKLKIDKFDVKLSSYFNNKIDYFYHHQLVQLDKVYQATITNDCKLNREILRTKMAVAVTNPDLMAPILFAEKGTFARVVGEVLQTFQCKPVSVSLATN-----NQCTNELPVISKGETVYLQPITRILTDKTYIPRKIDKCTNLLDPLYQLNDEMWITMSDRKEAXXXXXXXXXXXXXXXXXQEINDMNNNGMYTRDAIESARKHMLFPNEKEKILSIMVSKVMEGSHGGDYNFDVLLSKEHFKKVVYKVLYSIWGYFAVLGNMFSTILGIYYTVALLKMICSSLVS----LRQLRQVFGNSYKMLACLCPFVAKYLITAKHDKEIRLIK 5102 K+M+ +VR + + EE++L I T + D + + MAYL I Y+K P+ N I ++ + P+I +GGW+ K +++E M+ E + + P + + ++ II I + + I+G + YDC N K+G KYSL + E C NP +L T + ++VYQE DFI TE KEC + +F C + + ++ ++ IT ECEE F T +I +++ A+ G V +AG G C GG+Y + Q+ +VV Y V+L K++ FD ++ M + C+ + SC+TG S IVY D C+LT LKS F ++G + E+ D+ R+T + + TPT ++ MRF++ KC + +D+ YH L +K+Y + NDC LNREIL+TK+A+A+TNPD P+L ++G F R+VGEV+ T++C+ L N ++C NEL ++ KG+ + QP+TR++ + ++P C+N+ PL+++ D W+ R P LTEL + EF+ + D++ +G+Y +E AR+H+LFP +++ ILS +V+ ++G N+++LLS +HF+ V ++ ++WG F + G M + ILGI + ++++I + +++ ++ R++ ++KM PF+AK ++ H K+I IK Sbjct: 1935 KIMDNKVRTTTKDP--EELLLIINHLTKRSDDPNRYLVGMAYLMYNTIVIYRK---RTPRYNPNGYEFAITDIIRKVIEPFILTQGGWQAFINLVSKDNQTEMMQIKLKELLTEFETTINASDPKTA--RKGMNAIITTILIWMMCIKGVEPFVVYDCDNIKIGDKYSLKETEECIAANPGRLQTTATAVSYNVYQEVDFIKTEIKECSVTRKIVAFHCGHHSHSTIIEAGTETTVVSITRNECEEGFTTGRISIAGRVQVAAEEGKIKTTRVYAAGRITAGDGTCQGGEYTLLNQLVKGVVVIESYQVKLEKYQGYFDPDTQAMKKYPQCLATDRSCNTGMSTIVYHADTRTCRLTLLKSAIFDEVQGGVHSETETNTQISALDELRRTGRIGKPTITTTIGSEVTPTVVISTDTTIGMRFIKGRMVSKCDEM-------------------------------------MDFLYHKGLASTEKIYYDLVKNDCILNREILKTKLAMAITNPDNAIPLLPLQEGYFGRIVGEVMYTYKCEKTIAKLPENSTIPRDKCINELEIMHKGKIRFAQPVTRMINPEKFVPNMFS-CSNVYGPLFEIRDGSWLQFPARVIVAPPKIFGLTELASEAEFKPV-DISQSGIYQTKDLERAREHLLFPAQRQAILSNIVTITGGNNYGEKPNYELLLSPDHFQHVTANMMKAMWGRFLIFGQMMAGILGIILIIQIVRVILTQMLACFDIYKRERKI---NWKMAIGFLPFLAKTMVLHGHSKDIHKIK 2667 HSP 3 Score: 56.225 bits (134), Expect = 6.313e-7 Identity = 50/171 (29.24%), Postives = 74/171 (43.27%), Query Frame = 1 Query: 661 EPYRGEPEKFDDFFTEITQYADACGWTPDELKRRIPLYLKGYALQAYNNLECRGNNLDQLIENLRAEIVIDSDLQKIN--VQKFRNRYQGSRESVGEYVYTITELAKKAFGAGEHTPKLIEDQFWNGIQKYLYKA-LIMVEYRDLNELVHKAKRVEAIQRDRFNASIDAVE 1164 EP+ G K D F E Y + C WT ++K R+PLYLKG A + L E + I +K N + F +R Q ES Y + +L K+AFG + + D F GI++ +A L + L++ V A R EA + ++ A E Sbjct: 260 EPFDGSLNKLDTFIKEFEVYKNICHWTDQKVKERLPLYLKGSAQDVFVEEARDVTKLTTWTEIKEFLVKIFGIEKKGNRKILDFLHRKQRRDESNAVYACELKKLCKEAFGEADLPEDKMVDVFIRGIKREDIRANLGCLAPETLDKAVAIANRCEAHLGLGYQVAVLATE 430 The following BLAST results are available for this feature:
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 3
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30000559 ID=SMED30000559|Name=Transposon Ty3-I Gag-Pol polyprotein|organism=Schmidtea mediterranea sexual|type=transcript|length=10607bpback to top protein sequence of SMED30000559-orf-1 >SMED30000559-orf-1 ID=SMED30000559-orf-1|Name=SMED30000559-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=277bp MSSHTMQVRGDIELTVHFPSRTVNHVFKVMTECRSKCILWIDILRKLTDGback to top protein sequence of SMED30000559-orf-2 >SMED30000559-orf-2 ID=SMED30000559-orf-2|Name=SMED30000559-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=631bp MNNNQNNNNFIKILPIEPYRGEPEKFDDFFTEITQYADACGWTPDELKRRback to top protein sequence of SMED30000559-orf-3 >SMED30000559-orf-3 ID=SMED30000559-orf-3|Name=SMED30000559-orf-3|organism=Schmidtea mediterranea sexual|type=polypeptide|length=958bp MQDAETMKRGRGRLRKSEIAGKSDDRKTAERLREIANKKRHENPRVVDDNback to top protein sequence of SMED30000559-orf-4 >SMED30000559-orf-4 ID=SMED30000559-orf-4|Name=SMED30000559-orf-4|organism=Schmidtea mediterranea sexual|type=polypeptide|length=356bp MYQVNIQCLLSSSKINNYQCKIIWSIILIKFIHLYKKAYKEKPQMRTKYVback to top protein sequence of SMED30000559-orf-5 >SMED30000559-orf-5 ID=SMED30000559-orf-5|Name=SMED30000559-orf-5|organism=Schmidtea mediterranea sexual|type=polypeptide|length=429bp MCIDYRKLNDVTIKDSYPFPKAQEQYDKLRDTKYFTVIDANKGYMQIQMEback to top protein sequence of SMED30000559-orf-6 >SMED30000559-orf-6 ID=SMED30000559-orf-6|Name=SMED30000559-orf-6|organism=Schmidtea mediterranea sexual|type=polypeptide|length=125bp MECDIDSDDEYLSCEEIEESYFIIDREKEKVTERDLCYHFGRRINEGSVLback to top Annotated Terms
The following terms have been associated with this transcript:
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