SMED30000524

Overview
NameSMED30000524
Smed IDSMED30000524
Length (bp)3713
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30000524 (SMED30000524) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30000524 (SMED30000524) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30000524 (SMED30000524) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30000524 (SMED30000524) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30000524

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 12

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynx progenitor cellSMED30000524SMESG000004865.1 SMED30000524smed_20140614PMID:29906446
Zeng et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30000524SMESG000004865.1 dd_Smed_v4_9063_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30000524SMESG000004865.1 dd_Smed_v4_9063_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30000524SMESG000004865.1 dd_Smed_v4_9063_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
parapharyngeal regionSMED30000524SMESG000004865.1 dd_Smed_v4_9063_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30000524SMESG000004865.1 dd_Smed_v4_9063_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30000524SMESG000004865.1 dd_Smed_v4_9063_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30000524SMESG000004865.1 dd_Smed_v4_9063_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30000524SMESG000004865.1 Contig53777newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30000524SMESG000004865.1 Contig53777uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30000524SMESG000004865.1 OX_Smed_1.0.10295ox_Smed_v2PMID:24238224
Kao et al., 2013		whole organism asexual adult RNA-sequencing evidence
secretory systemSMED30000524SMESG000004865.1 dd_Smed_v6_9063_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30000524 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.007822:7891..23473 -18232
Homology
[Close]
BLAST of SMED30000524 vs. Planmine SMEST
Match: SMESG000004865.1 (SMESG000004865.1)

HSP 1 Score: 1662.51 bits (4304), Expect = 0.000e+0
Identity = 900/914 (98.47%), Postives = 907/914 (99.23%), Query Frame = 3 
Query:  243 MEFTXXXXXXXXXXXXXXXXXXQTQSNGNKDNISINQIPEDHLKNPNQRLPSSPRPINISKNNFVFEIKRSSGSELEEFHTPSCEYPEFKSSNSAKEXXXXXXXXXXXXFKSSSLEGIPEIIYSQNLITTDFSVLNKDSNCCNDNWQKQRKRKSNKKPNGFVPKETKKNSDSKTENTLIKNIDFYTKVDLDLESEIKPENHLENNFIVENDTWQLDAYEMLEEKLQLSKENQILNDKNSAESINSLIHLENDKNYSIVETCLISNEEECKILIPVDEQSMEINHDNEEFESQILDNSDNENMNDNTENIDNFYHFDEKIEIQSADTKNQIDIENKIEFDDMKINHYNPDNEKQIDISKEKDVYLNDENETIEVLDINTETDEDINNLKSLTDMEYENIYCTDEKLEEEILQVDESIYKIQYKRIGKTPETFPRRNLDNSHRQSATTITNVTSISDENINLNYQADIXXXXXXXXXXXFILNIFSKFKKRKATTKPEINEPNTILAETTPLENHDYFDEASIDCHSQTKGLEIDSNKALKSYDDSINNIGDTKPITDDECTESDNVFTNENLIINTNKDDINVPQQTIVIECKSSNITADTQSPAKNSLVNDIESLDNSFKFLKDFEKDSLKTDNEEELIKNDKLINRNPENFNLXXXXXXXXXXXXXXXXXTAKSTSNEPCEKTDPNHSLNRKSKSRIKLKFLTLFLHKDKKSKPKRAQSLPRDNINENGGRISNANSNTIQNNSVDKPIKEFNDVVNYLKAELSDQNEKVICKNKNDFPLNTVEECLMNEENSYTNDDYLFPDAITPSKIIHFHQNESYNFPFIDDTNIVAQDSLTMYNGENKIRKFLTEFYAPCASLETLTRIENDIDFASSESLHMTDNSFDPKMSEKPISPICSNRRPISAILDRLSRTR 2984
            MEFTNSKSKNKKRKHRNRKN+NQTQSNGNKDNISINQIPEDHLKNPNQRLPSSPRPINISKNNFVFEIKRSSGSE EEFHTPSCEYPEFKSSNSAKENDLDQQWNDLQDFKSSSLEGIPEIIYS+NLITTDFSVLNKDSNCCNDNWQKQRKRKSNKKPNGFVPKETKKNSDSKTENTLIKNIDFYTKVDL LE+EIKPENHLENNFIVENDTWQLDAYEMLEEKLQLSKENQILNDKNSAESINSLIHLENDKNYSIVETCLISNEEECKILIPVD QSMEINHDNEEFESQILDNSDNENMN NTENIDNFYHFDEKIEIQSADTKNQIDIENKIEFDDMKINHYNPDNEKQIDIS+EKDVYLNDENETIEVLDINTETDEDINNLKSLTDMEYENIYCTDEKLEEEILQVDESIYKIQYKRIGKTPETFPRRNLDNSHRQSATTITNVTSISDENINLNYQADIKKTKFHKKGNKFILNIFSKFKKRKATTKPEINEPNTILAETTPLENHDYFDEASIDCHSQTKGLEIDSNKALKSYDDSINNIGDTKPITDDECTESDNVFTNENLII+TNKDDINVPQQTIVIECKSSNITADTQSPAKNSLVNDIESLDNSFKFLKDFEKDSLKTDNEEELIKNDKLINRNPEN NLIP+KSIEIPISSEN+SNTAKSTSNEPCEKTDPNHSLNRKSKSRIKLKFLTLFL KDKKSKPKRAQSLPRDNINENGGRISNANSNTIQNNSVDKPIKEFNDVVNYLKAELSDQNEKVICKNKNDFPLN VEECLMNEENSYTNDDYLFPDAITPSKIIHFHQNESYNFPFIDDTNIVAQDSLTMYNGENKIRKFLTEFYAPCASLETLTRIENDIDFASSESLHMTDNSFDPKMSEKPISPICSNRRPISAILDRLSRTR
Sbjct:    1 MEFTNSKSKNKKRKHRNRKNRNQTQSNGNKDNISINQIPEDHLKNPNQRLPSSPRPINISKNNFVFEIKRSSGSEFEEFHTPSCEYPEFKSSNSAKENDLDQQWNDLQDFKSSSLEGIPEIIYSKNLITTDFSVLNKDSNCCNDNWQKQRKRKSNKKPNGFVPKETKKNSDSKTENTLIKNIDFYTKVDLGLETEIKPENHLENNFIVENDTWQLDAYEMLEEKLQLSKENQILNDKNSAESINSLIHLENDKNYSIVETCLISNEEECKILIPVDGQSMEINHDNEEFESQILDNSDNENMNGNTENIDNFYHFDEKIEIQSADTKNQIDIENKIEFDDMKINHYNPDNEKQIDISEEKDVYLNDENETIEVLDINTETDEDINNLKSLTDMEYENIYCTDEKLEEEILQVDESIYKIQYKRIGKTPETFPRRNLDNSHRQSATTITNVTSISDENINLNYQADIKKTKFHKKGNKFILNIFSKFKKRKATTKPEINEPNTILAETTPLENHDYFDEASIDCHSQTKGLEIDSNKALKSYDDSINNIGDTKPITDDECTESDNVFTNENLIIDTNKDDINVPQQTIVIECKSSNITADTQSPAKNSLVNDIESLDNSFKFLKDFEKDSLKTDNEEELIKNDKLINRNPENSNLIPDKSIEIPISSENNSNTAKSTSNEPCEKTDPNHSLNRKSKSRIKLKFLTLFLRKDKKSKPKRAQSLPRDNINENGGRISNANSNTIQNNSVDKPIKEFNDVVNYLKAELSDQNEKVICKNKNDFPLNAVEECLMNEENSYTNDDYLFPDAITPSKIIHFHQNESYNFPFIDDTNIVAQDSLTMYNGENKIRKFLTEFYAPCASLETLTRIENDIDFASSESLHMTDNSFDPKMSEKPISPICSNRRPISAILDRLSRTR 914
The following BLAST results are available for this feature:
BLAST of SMED30000524 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000524 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000524 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000524 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000524 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000524 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000524 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000524 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000524 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000524 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000524 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000524 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000524 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000524 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000004865.10.000e+098.47SMESG000004865.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30000524 ID=SMED30000524|Name=SMED30000524|organism=Schmidtea mediterranea sexual|type=transcript|length=3713bp
GAGATATTGATTTTATTTCCCACATAAAGGAAATTTTTGTATCCTCTCTC
GATTAGGTGGGAATTTCTCTAGAAACAGAAATCTTATTCTCTCGTTATTG
TGCGGCAATAGAAAACTTTTTCTACTCGTTCAGTTATTCTGAAATTATTT
CTCATTGTAAAATACTCTTTTACATACTTGTTTGTTTTTATTGTTATCGA
TAATAATCAATAATCTTTTTGGACATTTCGTATTTATAATTCATGGAGTT
TACGAATTCGAAATCGAAAAATAAAAAACGAAAGCATAGAAATAGAAAAA
ACAAAAATCAAACTCAATCAAATGGAAACAAAGATAATATATCCATCAAC
CAAATTCCCGAGGATCACTTGAAAAATCCTAATCAACGGCTGCCATCGAG
TCCCCGACCAATAAATATTTCAAAAAATAATTTTGTTTTTGAAATAAAAC
GAAGCAGTGGATCGGAACTTGAAGAATTCCACACGCCAAGTTGTGAATAT
CCCGAATTTAAAAGTTCCAATTCGGCAAAAGAAAACGATTTGGATCAACA
GTGGAATGATTTGCAAGACTTCAAGTCTTCGAGTTTGGAAGGAATTCCGG
AAATTATTTATTCTCAAAATTTAATCACGACTGATTTTTCCGTTCTAAAC
AAAGATTCAAATTGTTGTAATGATAACTGGCAAAAACAAAGAAAACGTAA
ATCAAACAAGAAACCTAATGGATTCGTGCCAAAAGAAACTAAAAAGAATT
CAGATTCAAAAACTGAAAATACCTTAATTAAAAATATTGATTTCTATACA
AAAGTTGATCTTGATTTGGAATCAGAGATAAAGCCAGAAAACCATTTAGA
AAACAACTTTATTGTAGAAAATGACACCTGGCAGCTAGATGCATATGAAA
TGTTGGAAGAGAAATTACAACTTTCAAAGGAAAATCAAATTTTGAATGAT
AAAAATTCTGCTGAATCTATAAATTCTTTGATACATTTAGAAAATGATAA
AAATTATTCAATCGTTGAAACGTGTCTAATATCTAATGAGGAAGAATGTA
AAATTTTAATTCCTGTAGATGAACAGTCAATGGAAATAAATCATGATAAT
GAAGAATTCGAATCTCAAATATTAGACAATTCTGATAATGAAAATATGAA
TGACAATACTGAAAATATTGATAACTTTTATCACTTTGATGAAAAAATAG
AAATTCAGAGTGCAGATACCAAAAATCAAATAGATATTGAAAACAAGATA
GAATTTGATGACATGAAAATTAATCACTACAATCCTGATAATGAAAAACA
AATTGATATAAGCAAAGAAAAAGACGTTTATCTGAACGATGAAAATGAAA
CAATAGAAGTTTTAGATATCAACACTGAAACCGATGAAGACATAAACAAT
TTGAAATCTTTGACAGACATGGAATACGAAAACATTTATTGTACAGATGA
AAAATTAGAAGAAGAAATATTACAAGTGGATGAATCGATCTACAAAATAC
AATATAAAAGAATTGGTAAAACACCCGAGACATTTCCTAGAAGGAATCTG
GATAATTCCCATCGTCAATCTGCAACAACAATTACAAATGTCACTAGCAT
TAGTGATGAAAATATCAATCTAAATTACCAAGCCGATATTAAAAAAACCA
AATTTCATAAAAAAGGAAATAAATTTATTCTGAACATATTTTCCAAATTT
AAAAAACGCAAAGCCACAACTAAACCTGAAATAAACGAACCGAATACTAT
TCTGGCAGAAACCACTCCATTGGAAAATCATGACTATTTCGACGAGGCTT
CTATAGATTGTCACAGTCAAACTAAAGGCCTTGAAATTGATTCTAATAAA
GCCTTGAAATCATACGACGATTCCATTAATAACATTGGAGATACGAAACC
AATCACAGACGATGAATGCACCGAATCCGATAATGTGTTCACAAATGAAA
ATTTAATAATTAATACAAATAAAGATGATATAAATGTTCCACAACAAACG
ATAGTTATTGAATGTAAATCTTCAAATATAACTGCAGATACTCAAAGTCC
AGCTAAAAATTCGCTTGTCAATGATATTGAATCTCTGGATAATTCATTTA
AATTTTTAAAGGATTTTGAAAAAGATTCATTGAAAACTGACAATGAAGAA
GAGTTAATAAAAAATGACAAATTAATAAATAGAAATCCAGAAAATTTCAA
TTTGATACCTGAAAAATCCATTGAAATTCCCATTTCATCAGAAAATAGCT
CCAATACTGCTAAATCAACTTCTAATGAACCATGTGAAAAGACCGATCCA
AATCATTCTTTGAATAGAAAATCCAAAAGTCGAATTAAATTAAAATTTTT
AACTTTGTTTTTACACAAAGACAAAAAGTCGAAACCGAAACGAGCGCAAT
CGTTGCCTAGAGACAATATTAATGAAAATGGCGGCAGGATTAGCAATGCC
AATTCAAACACAATCCAAAATAATTCAGTCGACAAACCGATTAAGGAGTT
CAATGATGTTGTCAATTATTTAAAAGCAGAATTAAGTGATCAAAATGAAA
AAGTCATCTGTAAAAATAAAAATGACTTTCCACTTAATACCGTAGAAGAA
TGTTTAATGAATGAAGAGAATTCCTACACTAATGACGATTACTTGTTTCC
TGATGCAATTACTCCAAGTAAAATAATACATTTTCATCAAAATGAATCGT
ATAATTTCCCATTTATTGATGATACAAATATTGTTGCTCAAGATTCATTA
ACAATGTACAATGGTGAAAATAAAATTCGTAAATTTTTAACAGAATTCTA
TGCCCCATGTGCAAGCTTAGAAACTCTAACAAGAATAGAAAATGACATCG
ACTTCGCAAGCTCAGAAAGCCTTCATATGACAGACAATTCTTTTGATCCT
AAAATGTCAGAGAAACCAATTTCTCCCATCTGCAGCAATAGAAGGCCAAT
AAGTGCTATTCTGGATCGGTTAAGTAGGACCAGATAATTTGAACAGTAGC
TACAAGTTCTGTGCTGTTTTAGACTGACATGATCAATATATAAAGCCACT
TTTATAATGAAATCATCTGTGAATTTTGGGTGTATGTTTATTAAATGTCA
ATTCATATCTAAATGACTTGGGTGATTTTTGTAAAATATGTTGCTGATTT
ATAAACAGTGTTGTATCGCGGAATAGTGTATTTTTCTGAAAGACATGCAA
AATTATCAAGGATAATTTTCAAATGATAATTAATTTAGTAGTTTGAGTTA
ATTTTCATCCGACTTTGATTTTGGGTTAATGATGAAGCTTATTGATTCGA
ATGAGTCATGCAGTTCTAGGAAATATTTATTAACCAATCAACGGTGAGTC
AAGTTATAGTCTAACTCAAGACTGTAACAGAAACAGAAATTACTCAATTG
AGTCTCTTTCTGACTTAGCGGAGGAATTGATGACAATAAATATTTTTCTA
TCGAGCATTTCAATTATATCATTTGAACGATCAAGATTCATTTCTACCAC
AGTTTCATGAGTCACTGAAAATTTCAAAACTACTTAGATTACGTCTGAAT
TTTAACCAAAGGTAATTTTTATGTTTTGTGGAAATGGAATGGAATTAAAG
TATTTTAATTTATTATAATTGCGTAAAATTTATAAACAGTGGCATTGTAA
ATTGGATATTTCTTGTTTTTACTACAGGTATATTGTTTTGACAATTCTTT
GGTTATTTTGAAT
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protein sequence of SMED30000524-orf-1

>SMED30000524-orf-1 ID=SMED30000524-orf-1|Name=SMED30000524-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=915bp
MEFTNSKSKNKKRKHRNRKNKNQTQSNGNKDNISINQIPEDHLKNPNQRL
PSSPRPINISKNNFVFEIKRSSGSELEEFHTPSCEYPEFKSSNSAKENDL
DQQWNDLQDFKSSSLEGIPEIIYSQNLITTDFSVLNKDSNCCNDNWQKQR
KRKSNKKPNGFVPKETKKNSDSKTENTLIKNIDFYTKVDLDLESEIKPEN
HLENNFIVENDTWQLDAYEMLEEKLQLSKENQILNDKNSAESINSLIHLE
NDKNYSIVETCLISNEEECKILIPVDEQSMEINHDNEEFESQILDNSDNE
NMNDNTENIDNFYHFDEKIEIQSADTKNQIDIENKIEFDDMKINHYNPDN
EKQIDISKEKDVYLNDENETIEVLDINTETDEDINNLKSLTDMEYENIYC
TDEKLEEEILQVDESIYKIQYKRIGKTPETFPRRNLDNSHRQSATTITNV
TSISDENINLNYQADIKKTKFHKKGNKFILNIFSKFKKRKATTKPEINEP
NTILAETTPLENHDYFDEASIDCHSQTKGLEIDSNKALKSYDDSINNIGD
TKPITDDECTESDNVFTNENLIINTNKDDINVPQQTIVIECKSSNITADT
QSPAKNSLVNDIESLDNSFKFLKDFEKDSLKTDNEEELIKNDKLINRNPE
NFNLIPEKSIEIPISSENSSNTAKSTSNEPCEKTDPNHSLNRKSKSRIKL
KFLTLFLHKDKKSKPKRAQSLPRDNINENGGRISNANSNTIQNNSVDKPI
KEFNDVVNYLKAELSDQNEKVICKNKNDFPLNTVEECLMNEENSYTNDDY
LFPDAITPSKIIHFHQNESYNFPFIDDTNIVAQDSLTMYNGENKIRKFLT
EFYAPCASLETLTRIENDIDFASSESLHMTDNSFDPKMSEKPISPICSNR
RPISAILDRLSRTR*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0000110pharynx progenitor cell
PLANA:0000418head
PLANA:0000484secretory system
PLANA:0003117parapharyngeal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 720..742
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 650..693
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 710..742
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 650..684