Cornifelin-like A
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30000491 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 11
Homology
BLAST of Cornifelin-like A vs. Ensembl Xenopus
Match: ifi35 (interferon induced protein 35 [Source:Xenbase;Acc:XB-GENE-1010748]) HSP 1 Score: 49.2914 bits (116), Expect = 2.472e-7 Identity = 34/108 (31.48%), Postives = 47/108 (43.52%), Query Frame = 3 Query: 213 SNKMSEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPC-------IICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQ 515 ++K +W CF D+G CL F P C+ C V + C I +R IRE+ +I G CTDCLC F G CA+ QM E++ + Sbjct: 30 TSKFGQWNSDTFDCFRDVGICLCGAFFP-------------MCVACKVAQDYGECCCLPLMGGTILALRTGIRERYHIQGTICTDCLCVTFCGPCALCQMARELESRR 124
BLAST of Cornifelin-like A vs. Ensembl Xenopus
Match: ENSXETT00000008293.1 (novel protein similar to cornifelin [Source:NCBI gene;Acc:733751]) HSP 1 Score: 48.9062 bits (115), Expect = 2.592e-7 Identity = 34/108 (31.48%), Postives = 47/108 (43.52%), Query Frame = 3 Query: 213 SNKMSEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPC-------IICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQ 515 ++K +W CF D+G CL F P C+ C V + C I +R IRE+ +I G CTDCLC F G CA+ QM E++ + Sbjct: 22 TSKFGQWNSDTFDCFRDVGICLCGAFFP-------------MCVACKVAQDYGECCCLPLMGGTILALRTGIRERYHIQGTICTDCLCVTFCGPCALCQMARELESRR 116
BLAST of Cornifelin-like A vs. Ensembl Xenopus
Match: ifi35 (interferon induced protein 35 [Source:Xenbase;Acc:XB-GENE-1010748]) HSP 1 Score: 48.9062 bits (115), Expect = 2.868e-7 Identity = 34/108 (31.48%), Postives = 47/108 (43.52%), Query Frame = 3 Query: 213 SNKMSEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPC-------IICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQ 515 ++K +W CF D+G CL F P C+ C V + C I +R IRE+ +I G CTDCLC F G CA+ QM E++ + Sbjct: 32 TSKFGQWNSDTFDCFRDVGICLCGAFFP-------------MCVACKVAQDYGECCCLPLMGGTILALRTGIRERYHIQGTICTDCLCVTFCGPCALCQMARELESRR 126
BLAST of Cornifelin-like A vs. Ensembl Xenopus
Match: abtb1 (ankyrin repeat and BTB (POZ) domain containing 1 [Source:Xenbase;Acc:XB-GENE-976579]) HSP 1 Score: 46.595 bits (109), Expect = 1.552e-6 Identity = 33/101 (32.67%), Postives = 47/101 (46.53%), Query Frame = 3 Query: 213 SNKMSEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPCI---ICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVK 506 ++ S+W + C D+G CL FVPC L ++ C L PC+ + VR IRE+ +I G C D +C F G C + QM E+K Sbjct: 17 TSNSSQWNSDVFDCCEDMGICLCGTFVPCILACKVSQDFGECCCL---------PCLFGSVLAVRTGIRERYHIEGSICNDWVCLSFCGQCTLCQMARELK 108
BLAST of Cornifelin-like A vs. UniProt/SwissProt
Match: sp|Q9LQU4|PCR2_ARATH (Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis thaliana OX=3702 GN=PCR2 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 6.925e-13 Identity = 41/111 (36.94%), Postives = 56/111 (50.45%), Query Frame = 3 Query: 228 EWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFP--------PCII-CYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQGNAISL 533 EW G C CF D C ++++ PC G AE VD CG + CI C+ RGK+R + NI G CTDCL F C+++Q + E+KH +G +SL Sbjct: 15 EWSTGFCDCFSDCKNCCITFWCPCITFGQVAEIVDRGSTSCGTAGALYALIAVVTGCACIYSCFYRGKMRAQYNIKGDDCTDCLKHFCCELCSLTQQYRELKH-RGYDMSL 124
BLAST of Cornifelin-like A vs. UniProt/SwissProt
Match: sp|D9HP20|CNR4_MAIZE (Cell number regulator 4 OS=Zea mays OX=4577 GN=CNR4 PE=2 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 2.426e-11 Identity = 44/144 (30.56%), Postives = 68/144 (47.22%), Query Frame = 3 Query: 228 EWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGV----------CSIFFPPC---IICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQGNAISLERE*EFSKLFTINVAL*LNFQNKFINLKK 620 EW G+CGCF D +C LS+ PC G AE +D CG+ + PC C R K+R ++ C DC + G CA+SQM+ E+K+ +G ++ R+ FS T + L ++K+ ++ K Sbjct: 10 EWTTGLCGCFSDCKSCCLSFLCPCIPFGQVAEVLDKGMTSCGLAGLLYCLLLHAGVAVVPCHCIYTCTYRRKLRAAYDLPPEPCADCCVHMWCGPCAISQMYRELKN-RGADPAMGRQPAFSLSLTSHCRFFL--KSKYYHIIK 150
BLAST of Cornifelin-like A vs. UniProt/SwissProt
Match: sp|P0CW97|PCR3_ARATH (Protein PLANT CADMIUM RESISTANCE 3 OS=Arabidopsis thaliana OX=3702 GN=PCR3 PE=3 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 5.352e-11 Identity = 37/103 (35.92%), Postives = 47/103 (45.63%), Query Frame = 3 Query: 228 EWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPCII---------CYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKH 509 EW G C CF D C +++ PC G A+ VD CG + C RGKIR + NI G CTDCL F CA++Q + E+KH Sbjct: 15 EWSTGFCDCFSDCQNCCITWLCPCITFGQVADIVDRGNTSCGTAGALYVLLAAITGCGCLYSCIYRGKIRAQYNIRGDGCTDCLKHFCCELCALTQEYRELKH 117
BLAST of Cornifelin-like A vs. UniProt/SwissProt
Match: sp|Q9LQU2|PCR1_ARATH (Protein PLANT CADMIUM RESISTANCE 1 OS=Arabidopsis thaliana OX=3702 GN=PCR1 PE=1 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 6.665e-9 Identity = 37/103 (35.92%), Postives = 47/103 (45.63%), Query Frame = 3 Query: 228 EWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVD---NSCILCGVCSIFFP------PCIICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKH 509 EW G C CF D C ++ PC G AE VD SC G + C+ GK+R + NI G CTDCL F CA++Q + E+KH Sbjct: 14 EWSTGFCDCFSDCRNCCITLCCPCITFGQVAEIVDRGSKSCCAAGALYMLIDLITSCGRMYACFYSGKMRAQYNIKGDGCTDCLKHFCCNLCALTQQYRELKH 116
BLAST of Cornifelin-like A vs. UniProt/SwissProt
Match: sp|Q9LS43|PCR7_ARATH (Protein PLANT CADMIUM RESISTANCE 7 OS=Arabidopsis thaliana OX=3702 GN=PCR7 PE=2 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 1.213e-8 Identity = 35/103 (33.98%), Postives = 47/103 (45.63%), Query Frame = 3 Query: 225 SEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFP--------PCII-CYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVK 506 +W G+ C D T L+ F PC G A+ D CG C +F+ PC+ C R KIR K + +DC+ FF CCA+ Q H E+K Sbjct: 3 KQWTSGLFSCMEDSETACLTCFCPCVTFGRIADISDEGRTGCGRCGVFYGLICCVVGLPCLFSCTYRTKIRSKFGLPESPTSDCVTHFFCECCALCQEHRELK 105
BLAST of Cornifelin-like A vs. TrEMBL
Match: A0A267G1B3 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig011077g1 PE=4 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.751e-27 Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 3 Query: 222 MSEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPCIICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQGNAISLERE 542 MS ++ G+CGCF D G L++YF PCY G +AEAV +SC LCG +F P + C +RGK+REKQ+I GGCC+D L FF CA+ Q EVKH+ N ++ERE Sbjct: 1 MSSFRHGLCGCFDDCGVALITYFCPCYAFGKNAEAVGDSCCLCGCAYLFCPIILGCIMRGKLREKQDIPGGCCSDLLTHFFCHMCALCQEGQEVKHITLNTQAMERE 107
BLAST of Cornifelin-like A vs. TrEMBL
Match: A0A267E7X8 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig033169g1 PE=4 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 6.990e-25 Identity = 53/107 (49.53%), Postives = 70/107 (65.42%), Query Frame = 3 Query: 225 SEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIF-FPPCIICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQGNAISLERE 542 E+Q G+CGCF D G C+++YFVPCY G +AEAV SC+LCG+ F F C+ ++RGKIREKQ I G CC D L +F CA+ Q EVK + + ++ERE Sbjct: 3 GEFQNGLCGCFNDCGLCVITYFVPCYTFGKNAEAVGQSCVLCGLGMFFGFAICLGPFIRGKIREKQGIDGSCCGDVLTWWFCSFCALMQEAQEVKGLSPSGAAIERE 109
BLAST of Cornifelin-like A vs. TrEMBL
Match: A0A1I8JBM9 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig001673g1 PE=4 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.225e-23 Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 3 Query: 225 SEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPCIICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQGNAISLERE 542 ++++ G+CGCF D G C+++Y VPCY G +AEAV SC+LCG+ +F PC+ VRGKIREKQ I G +D L CA+ Q EVK M ++ERE Sbjct: 3 NQFKHGLCGCFDDFGLCIVTYLVPCYTFGKNAEAVQESCLLCGIGYLFVSPCLGAIVRGKIREKQGIPGRFVSDLLAHLCCPLCALMQDAQEVKAMAPAGSAVERE 108
BLAST of Cornifelin-like A vs. TrEMBL
Match: A0A267F6N5 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig018526g1 PE=4 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.624e-23 Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = 3 Query: 222 MSEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPCIICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQGNAISLERE 542 M++++ G+CGCF D G C+++YFVPCY G +AEAV +SC+LCG+ +F PC+ VRGKIREKQ I G D CA+ Q EVK M +ERE Sbjct: 1 MADFKHGLCGCFDDCGLCIITYFVPCYTFGKNAEAVGDSCVLCGLAFLFVSPCVGAIVRGKIREKQGINGSFIGDFFVHLCCPLCALVQDAQEVKEMSPGGQVVERE 107
BLAST of Cornifelin-like A vs. TrEMBL
Match: A0A1I8H2V8 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.251e-22 Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 3 Query: 225 SEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPCIICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQGNAISLERE 542 ++++ G+CGCF D G C+++Y VPCY G +AEAV SC+LCG+ +F PC+ VRGKIREKQ I G +D L CA+ Q EVK M ++ERE Sbjct: 65 NQFKHGLCGCFDDFGLCIVTYLVPCYTFGKNAEAVQESCLLCGIGYLFVSPCLGAIVRGKIREKQGIPGRFVSDLLAHLCCPLCALMQDAQEVKAMAPAGSAVERE 170
BLAST of Cornifelin-like A vs. Ensembl Nematostella
Match: EDO50068 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RFB0]) HSP 1 Score: 78.9518 bits (193), Expect = 2.444e-19 Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 3 Query: 225 SEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPC----IICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQGN 521 ++W G+ GCF D GTCL++Y PCY G +AEAV +SC+LCG+ FF P ++ VRGKIRE+ I G DC + C++ Q +VK G+ Sbjct: 3 NDWNNGLFGCFNDCGTCLITYIAPCYTFGKNAEAVGDSCLLCGLA--FFVPVVDLIVMSSVRGKIREQHGISGSFIGDCAATICCPFCSLVQSAQQVKGAPGS 103
BLAST of Cornifelin-like A vs. Ensembl Nematostella
Match: EDO44794 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUR8]) HSP 1 Score: 75.485 bits (184), Expect = 5.655e-18 Identity = 44/94 (46.81%), Postives = 52/94 (55.32%), Query Frame = 3 Query: 231 WQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPCIIC--YVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVK 506 W GICGCF DI TC L+YF PC + G +AEAV +C L G S I C +R KIREK I G DC+ +F CA SQ E+K Sbjct: 3 WSSGICGCFEDINTCALTYFCPCVVAGKNAEAVGENCFLHGFLSTLGCVGIFCGAKIREKIREKHGIEGSFGNDCIMHWFCPLCAYSQEARELK 96
BLAST of Cornifelin-like A vs. Ensembl Nematostella
Match: EDO36116 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJK5]) HSP 1 Score: 69.3218 bits (168), Expect = 1.126e-15 Identity = 42/109 (38.53%), Postives = 61/109 (55.96%), Query Frame = 3 Query: 222 MSEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPCIICY----VRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHE--VKHMQGNAIS 530 M ++ G+ GCF DI CL +Y VPCY G AEAV C++CG+ + PC + +RGK+RE++ I G D L ++ G C++ Q E VK GN+I+ Sbjct: 1 MGQFSNGLFGCFSDIPLCLTTYCVPCYTFGKTAEAVGEDCLMCGI--VLMVPCANIWFATQIRGKVREQKGIEGSFVNDLLMTWCCGFCSIIQEALEMGVKAPIGNSIA 107
BLAST of Cornifelin-like A vs. Ensembl Nematostella
Match: EDO42612 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S0W1]) HSP 1 Score: 51.9878 bits (123), Expect = 6.774e-9 Identity = 33/96 (34.38%), Postives = 49/96 (51.04%), Query Frame = 3 Query: 225 SEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPCIICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHM 512 +W G+CGCF DIG+CLL YF PC+L+ ++ + C C + +R K+R +QNI G D L C + Q+ E+KH+ Sbjct: 52 RDWHSGMCGCFDDIGSCLLGYFCPCFLLIDVSQRMGEGCCFPCCCPG-----ALVGLRVKLRVEQNIQGSLINDYCAVQCLPLCVLCQLSRELKHL 142
BLAST of Cornifelin-like A vs. Ensembl Medaka
Match: ponzr3 (cornifelin homolog A [Source:NCBI gene;Acc:101160195]) HSP 1 Score: 50.0618 bits (118), Expect = 7.355e-8 Identity = 35/108 (32.41%), Postives = 55/108 (50.93%), Query Frame = 3 Query: 213 SNKMSEWQQGICGCFGDIGTCLLSYF-VPCYLIGLDAEAVDNSCI--LCGVCSIFFPPCIICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQGNAI 527 ++ +EW GIC CF D+ +C +++ PC+ +A + C+ L G I P I +R IR++ I G C DC+ SFF G C+ Q+ E+K + I Sbjct: 16 TSTSNEWSSGICDCFDDLRSCCFAFWCFPCFACITSKKAGECLCLPLLDGFGCI---PPITTAMRVSIRKQYGIEGTICRDCVFSFFCGPCSWCQISREMKIRKAPMI 120
BLAST of Cornifelin-like A vs. Planmine SMEST
Match: SMESG000023836.1 (SMESG000023836.1) HSP 1 Score: 211.846 bits (538), Expect = 3.777e-71 Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 3 Query: 222 MSEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPCIICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQGNAISLERE 542 MSEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGV SIFFPPCIICYVRGKIREKQNI GGCCTDCLCSFFLGCCAV+QMHHEVKHMQGNAISLERE Sbjct: 1 MSEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVISIFFPPCIICYVRGKIREKQNIDGGCCTDCLCSFFLGCCAVAQMHHEVKHMQGNAISLERE 107
BLAST of Cornifelin-like A vs. Planmine SMEST
Match: SMESG000023831.1 (SMESG000023831.1) HSP 1 Score: 167.548 bits (423), Expect = 1.026e-53 Identity = 73/107 (68.22%), Postives = 90/107 (84.11%), Query Frame = 3 Query: 222 MSEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPCIICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQGNAISLERE 542 MS+WQQGICGCFGD+GTC+L+YF PCYL+GLDAE VD +C+LC + +FFPPCI C++RGK+R K+NI GG C DC+ S FL CC V+QMHHEVKHM G A++LERE Sbjct: 1 MSDWQQGICGCFGDLGTCVLAYFAPCYLVGLDAETVDKNCVLCCIAFLFFPPCITCHIRGKVRSKRNIPGGSCNDCVVSLFLPCCTVAQMHHEVKHMSGTAMALERE 107
BLAST of Cornifelin-like A vs. Planmine SMEST
Match: SMESG000023846.1 (SMESG000023846.1) HSP 1 Score: 117.472 bits (293), Expect = 4.910e-34 Identity = 58/107 (54.21%), Postives = 74/107 (69.16%), Query Frame = 3 Query: 222 MSEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPCIICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQGNAISLERE 542 M+EWQ G+CGCF D GTCLLSYFVPCYL+G DAEAV +SC LCG+ + C+ VR K+REK+ I G C D + S + CC+V+Q H EV M A+S+ER+ Sbjct: 1 MAEWQHGLCGCFSDCGTCLLSYFVPCYLVGKDAEAVGDSCFLCGLGYLVIYGCVGAIVRKKVREKRGISGNFCFDLVASCWCPCCSVAQTHQEVLAMNAAAMSIERD 107
BLAST of Cornifelin-like A vs. Planmine SMEST
Match: SMESG000023842.1 (SMESG000023842.1) HSP 1 Score: 115.546 bits (288), Expect = 3.000e-33 Identity = 64/107 (59.81%), Postives = 80/107 (74.77%), Query Frame = 3 Query: 222 MSEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPCIICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQGNAISLERE 542 M EW+ G+CGC D GTCLL+YFVPCYLIG DAEAV +SC LCG S+F PCII YVR K+R+++NI G D LC+F GCC V+QMH EV M G+++++ERE Sbjct: 1 MGEWEHGLCGCCDDCGTCLLTYFVPCYLIGKDAEAVGDSCFLCGCGSLFAGPCIIAYVRSKVRDRRNITGSFIGDLLCAFCCGCCVVAQMHQEVIAMGGSSMAIERE 107
BLAST of Cornifelin-like A vs. Planmine SMEST
Match: SMESG000060415.1 (SMESG000060415.1) HSP 1 Score: 86.6557 bits (213), Expect = 6.642e-22 Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 3 Query: 231 WQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFPPCI--ICYVRGKIREKQNIVGGCCTDCLCSFFLGCCAVSQMHHEVKHMQGNAISLERE 542 WQ G+C CF D G CL+S+F PCY +G+DA+AV SC LCG +I P I + +R IR++Q I G D F CC +QMH E + ++ERE Sbjct: 11 WQHGLCSCFDDCGLCLVSFFCPCYTVGMDAKAVGESCCLCGFATI-TPAAIFTVPLIRSYIRDRQKIPGSYLEDFCVFLFCPCCTTAQMHQETYEFSSMSQAIERE 115 The following BLAST results are available for this feature:
BLAST of Cornifelin-like A vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Cornifelin-like A vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Cornifelin-like A vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Cornifelin-like A vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Cornifelin-like A vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of Cornifelin-like A vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Cornifelin-like A vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Cornifelin-like A vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Cornifelin-like A vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Cornifelin-like A vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Cornifelin-like A vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Cornifelin-like A vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 4
BLAST of Cornifelin-like A vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of Cornifelin-like A vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30000491 ID=SMED30000491|Name=Cornifelin-like A|organism=Schmidtea mediterranea sexual|type=transcript|length=621bpback to top protein sequence of SMED30000491-orf-1 >SMED30000491-orf-1 ID=SMED30000491-orf-1|Name=SMED30000491-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=108bp MSEWQQGICGCFGDIGTCLLSYFVPCYLIGLDAEAVDNSCILCGVCSIFFback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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