SMED30000484
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30000484 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Alignments
SMED30000484 aligns in the following genomic locations:
Homology
BLAST of SMED30000484 vs. Ensembl Human
Match: TRAF2 (TNF receptor associated factor 2 [Source:HGNC Symbol;Acc:HGNC:12032]) HSP 1 Score: 83.5741 bits (205), Expect = 7.370e-17 Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = -3 Query: 63 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCAND 320 +IWKI+ F +K Q+A +I S FY+ R GYKM L++YL+G+G +GTH+S+FF + KG D L WP++ K TL +L N+ Sbjct: 354 FIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNN 439
BLAST of SMED30000484 vs. Ensembl Human
Match: TRAF5 (TNF receptor associated factor 5 [Source:HGNC Symbol;Acc:HGNC:12035]) HSP 1 Score: 82.0333 bits (201), Expect = 3.210e-16 Identity = 39/98 (39.80%), Postives = 61/98 (62.24%), Query Frame = -3 Query: 39 IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDISA-----ETFKP 317 IWK+T + K ++A D +SI S FY+ R GY++ + YL+G+G +G+H+S++F + +G+FD L WP+ + TL +L D S ETFKP Sbjct: 407 IWKVTDYKMKKREAVDGHTVSIFSQSFYTSRCGYRLCARAYLNGDGSGRGSHLSLYFVVMRGEFDSLLQWPFRQRVTLMLL---DQSGKKNIMETFKP 501
BLAST of SMED30000484 vs. Ensembl Human
Match: TRAF5 (TNF receptor associated factor 5 [Source:HGNC Symbol;Acc:HGNC:12035]) HSP 1 Score: 82.0333 bits (201), Expect = 3.210e-16 Identity = 39/98 (39.80%), Postives = 61/98 (62.24%), Query Frame = -3 Query: 39 IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDISA-----ETFKP 317 IWK+T + K ++A D +SI S FY+ R GY++ + YL+G+G +G+H+S++F + +G+FD L WP+ + TL +L D S ETFKP Sbjct: 407 IWKVTDYKMKKREAVDGHTVSIFSQSFYTSRCGYRLCARAYLNGDGSGRGSHLSLYFVVMRGEFDSLLQWPFRQRVTLMLL---DQSGKKNIMETFKP 501
BLAST of SMED30000484 vs. Ensembl Human
Match: TRAF5 (TNF receptor associated factor 5 [Source:HGNC Symbol;Acc:HGNC:12035]) HSP 1 Score: 82.0333 bits (201), Expect = 3.210e-16 Identity = 39/98 (39.80%), Postives = 61/98 (62.24%), Query Frame = -3 Query: 39 IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDISA-----ETFKP 317 IWK+T + K ++A D +SI S FY+ R GY++ + YL+G+G +G+H+S++F + +G+FD L WP+ + TL +L D S ETFKP Sbjct: 407 IWKVTDYKMKKREAVDGHTVSIFSQSFYTSRCGYRLCARAYLNGDGSGRGSHLSLYFVVMRGEFDSLLQWPFRQRVTLMLL---DQSGKKNIMETFKP 501
BLAST of SMED30000484 vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 78.9518 bits (193), Expect = 2.148e-15 Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = -3 Query: 75 IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL 317 IWKI + ++ Q+A +S+ S PFY+ GYKM +VYL+G+G KGTH+S+FF + +G++D L WP+ K TL ++ Sbjct: 336 IWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLM 416
BLAST of SMED30000484 vs. Ensembl Celegans
Match: trf-1 (TNF Receptor Associated Factor (TRAF) homolog; TRF-1 [Source:UniProtKB/TrEMBL;Acc:G5EG80]) HSP 1 Score: 62.003 bits (149), Expect = 2.901e-10 Identity = 63/258 (24.42%), Postives = 97/258 (37.60%), Query Frame = -3 Query: 75 CYEMRIKCEHCNKTKTWIKIQNEHKNIKDEKVCKKFKRKCPNQYGL---EKVELKEHWGKYNKRKVDCPLRKWDAKKKTVKEEMPQHLQMKIEEHA*I*MTALRENKLKIDDIVIEVESHKILMTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGELPVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL 839 C R C CNKT I++ + + K C + CP Q GL ++E++ H CP + KE + QHL + H L EI D + +EL + M + +++ T E+ IWKI ++ +A+ +I S+PF S R GYKM L G+G G IS++ L KG+FD WP+ +++L Sbjct: 130 CELNRAVCSFCNKT-----IRDSDRE-RHPKTCPQVIISCPFQCGLTDRPRLEIEAHCPSCPNVDNVCPFVPYGCTFAGGKESIQQHLSDEPVRHL------------------------MYLCDEITDLKGTYELMER-----------DMGSFNDRQTRILSAAETCTEMFGPQLIWKIDKLQQRTNEAKSGADTTIFSVPFMSHRFGYKMMACACLFGDGSSAGKSISLYVLLLKGEFDPTLEWPFHRAIKISLL 346
BLAST of SMED30000484 vs. Ensembl Fly
Match: Traf4 (gene:FBgn0026319 transcript:FBtr0334401) HSP 1 Score: 71.633 bits (174), Expect = 2.816e-13 Identity = 29/81 (35.80%), Postives = 52/81 (64.20%), Query Frame = -3 Query: 75 IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL 317 +WKIT ++ K +AR + + + S PFY+ + GYK++ ++L+GNG + TH+SV+ + G++D L WP+S+ T + Sbjct: 325 LWKITDWSAKMAEARGKDGLELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDALLKWPFSHSITFTLF 405
BLAST of SMED30000484 vs. Ensembl Fly
Match: Traf4 (gene:FBgn0026319 transcript:FBtr0077429) HSP 1 Score: 71.2478 bits (173), Expect = 3.760e-13 Identity = 29/81 (35.80%), Postives = 52/81 (64.20%), Query Frame = -3 Query: 75 IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL 317 +WKIT ++ K +AR + + + S PFY+ + GYK++ ++L+GNG + TH+SV+ + G++D L WP+S+ T + Sbjct: 334 LWKITDWSAKMAEARGKDGLELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDALLKWPFSHSITFTLF 414
BLAST of SMED30000484 vs. Ensembl Zebrafish
Match: traf4a (tnf receptor-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-040308-1]) HSP 1 Score: 86.6557 bits (213), Expect = 4.500e-18 Identity = 64/272 (23.53%), Postives = 113/272 (41.54%), Query Frame = -3 Query: 39 CEHCNKTKTWIKIQNEHKNIKDEKVCKKFKRKCPNQYGLEKVELKEHWGKYNKRK-----VDCPLRKWDAKKKTVKEEMPQHLQMKIEEHA*I*MTALRENKLKIDDIVIEVESHKILMTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGELPVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDIS-------AETFKP 818 C++C K + IQN + C +F +CPNQ G + +E + K V CP ++ K + K + +HL+ + H + + + + +I ++ E+E + + IWK+T +++K Q+A+ S PFY+ R GYK+++ +L+GNG +G+H+S++ + G++D L WP+S K T +IL +D S ETF P Sbjct: 195 CKYCGKEFVYDTIQNHQYH------CPRFPVQCPNQCGTPNI-AREDLANHVKESCGSALVLCPFKEAGCKHRCPKMAIGRHLEESTKSHLTMMCSLVGRQRQEILELRREMEELSVSHDGVL-------------------------------------------------IWKLTDYSRKLQEAKLRNNHEFFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSIYIRVLPGEYDNLLEWPFSYKVTFSILDQSDPSLSKPQHITETFNP 410
BLAST of SMED30000484 vs. Ensembl Zebrafish
Match: traf4a (tnf receptor-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-040308-1]) HSP 1 Score: 86.6557 bits (213), Expect = 4.500e-18 Identity = 64/272 (23.53%), Postives = 113/272 (41.54%), Query Frame = -3 Query: 39 CEHCNKTKTWIKIQNEHKNIKDEKVCKKFKRKCPNQYGLEKVELKEHWGKYNKRK-----VDCPLRKWDAKKKTVKEEMPQHLQMKIEEHA*I*MTALRENKLKIDDIVIEVESHKILMTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGELPVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDIS-------AETFKP 818 C++C K + IQN + C +F +CPNQ G + +E + K V CP ++ K + K + +HL+ + H + + + + +I ++ E+E + + IWK+T +++K Q+A+ S PFY+ R GYK+++ +L+GNG +G+H+S++ + G++D L WP+S K T +IL +D S ETF P Sbjct: 195 CKYCGKEFVYDTIQNHQYH------CPRFPVQCPNQCGTPNI-AREDLANHVKESCGSALVLCPFKEAGCKHRCPKMAIGRHLEESTKSHLTMMCSLVGRQRQEILELRREMEELSVSHDGVL-------------------------------------------------IWKLTDYSRKLQEAKLRNNHEFFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSIYIRVLPGEYDNLLEWPFSYKVTFSILDQSDPSLSKPQHITETFNP 410
BLAST of SMED30000484 vs. Ensembl Zebrafish
Match: traf2b (Tnf receptor-associated factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5345]) HSP 1 Score: 84.3445 bits (207), Expect = 3.053e-17 Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = -3 Query: 39 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDIS--AETFKP 320 +IWKI F+++ Q A ++ S FYS + GYKM L++YL+G+G +G+H+S+FF + KGK+D L WP+S K TL +L N+ + F+P Sbjct: 385 FIWKIAEFSRRRQDAVAGRAPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGSHLSLFFVVMKGKYDALLKWPFSQKVTLMLLDQNNREHIIDAFRP 480
BLAST of SMED30000484 vs. Ensembl Zebrafish
Match: traf2b (Tnf receptor-associated factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5345]) HSP 1 Score: 84.3445 bits (207), Expect = 3.053e-17 Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = -3 Query: 39 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDIS--AETFKP 320 +IWKI F+++ Q A ++ S FYS + GYKM L++YL+G+G +G+H+S+FF + KGK+D L WP+S K TL +L N+ + F+P Sbjct: 385 FIWKIAEFSRRRQDAVAGRAPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGSHLSLFFVVMKGKYDALLKWPFSQKVTLMLLDQNNREHIIDAFRP 480
BLAST of SMED30000484 vs. Ensembl Zebrafish
Match: traf2b (Tnf receptor-associated factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5345]) HSP 1 Score: 84.3445 bits (207), Expect = 3.250e-17 Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = -3 Query: 39 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDIS--AETFKP 320 +IWKI F+++ Q A ++ S FYS + GYKM L++YL+G+G +G+H+S+FF + KGK+D L WP+S K TL +L N+ + F+P Sbjct: 398 FIWKIAEFSRRRQDAVAGRAPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGSHLSLFFVVMKGKYDALLKWPFSQKVTLMLLDQNNREHIIDAFRP 493
BLAST of SMED30000484 vs. Ensembl Xenopus
Match: hspb6 (heat shock protein family B (small) member 6 [Source:Xenbase;Acc:XB-GENE-876273]) HSP 1 Score: 81.6481 bits (200), Expect = 1.705e-16 Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = -3 Query: 39 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCAN--DISAETFKP 320 ++WKI+ T K A IS+ S FY+ + GYK+ L++YL+G+G KGTH+S+FF + KG++D L WP+ +K T ++ N D + F+P Sbjct: 232 FLWKISDLTNKSHDAVTGRAISLYSPAFYTAKYGYKVCLRIYLNGDGAGKGTHVSLFFTVMKGEYDALLPWPFKHKVTFVLVDHNNRDSVFDAFRP 327
BLAST of SMED30000484 vs. Ensembl Xenopus
Match: TRAF2 (TNF receptor associated factor 2 [Source:NCBI gene;Acc:100494415]) HSP 1 Score: 82.0333 bits (201), Expect = 2.037e-16 Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = -3 Query: 39 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDIS--AETFKP 320 +IWKI+ F KK Q A + ++ S PFY+ + GYKM L++YL+G+G + TH+S+FF + KG D L WP++ K TL +L N+ + F+P Sbjct: 307 FIWKISEFGKKRQDAINGRCPAMFSPPFYTNKYGYKMCLRIYLNGDGTGRNTHLSLFFVVMKGNNDALLRWPFNQKVTLMLLDQNNREHVIDAFRP 402
BLAST of SMED30000484 vs. Ensembl Xenopus
Match: TRAF2 (TNF receptor associated factor 2 [Source:NCBI gene;Acc:100494415]) HSP 1 Score: 82.0333 bits (201), Expect = 2.127e-16 Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = -3 Query: 39 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDIS--AETFKP 320 +IWKI+ F KK Q A + ++ S PFY+ + GYKM L++YL+G+G + TH+S+FF + KG D L WP++ K TL +L N+ + F+P Sbjct: 334 FIWKISEFGKKRQDAINGRCPAMFSPPFYTNKYGYKMCLRIYLNGDGTGRNTHLSLFFVVMKGNNDALLRWPFNQKVTLMLLDQNNREHVIDAFRP 429
BLAST of SMED30000484 vs. Ensembl Xenopus
Match: sytl2 (synaptotagmin like 2 [Source:Xenbase;Acc:XB-GENE-945155]) HSP 1 Score: 79.337 bits (194), Expect = 1.706e-15 Identity = 66/274 (24.09%), Postives = 115/274 (41.97%), Query Frame = -3 Query: 39 CEHCNKTKTWIKIQNEHKNIKDEKVCKKFKRKCPNQYGLEKV---ELKEHW-GKYNKRKVDCPLRKWDAKKKTVKEEMPQHLQMKIEEHA*I*MTALRENKLKIDDIVIEVESHKILMTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGELPVTP---YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDIS-------AETFKP 818 C +CNK + IQ+ C ++ CPNQ G+ + +L H + V CP + K + K + +HL+ + H + M++L + + EI + R+ E EL V+ IWKI+ +++K Q+A+ S PFY+ + GYK+++ +L+GNG +G+++SV+ + G++D L WP+S + T ++L +D S ETF P Sbjct: 195 CPYCNKEFVFDTIQSHQYQ------CPRYPTPCPNQCGIASIAREDLSNHLKDSCSSALVLCPFKDSGCKHRGPKITISRHLEENMRAHLSM-MSSLVSRQRQ----------------EILELRKQVE-----------------------------------ELSVSSEGVLIWKISDYSRKVQEAKVRGNFESFSPPFYTHKYGYKLQVSAFLNGNGSGEGSYLSVYIRVLPGEYDNLLEWPFSYRVTFSLLDQSDPSLSKPQHITETFNP 410
BLAST of SMED30000484 vs. Ensembl Xenopus
Match: ssh2 (slingshot protein phosphatase 2 [Source:Xenbase;Acc:XB-GENE-993093]) HSP 1 Score: 77.7962 bits (190), Expect = 5.318e-15 Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = -3 Query: 75 IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL 317 IWKI + ++ Q+A +S+ S PFY+ GYKM +VYL+G+G KGTH+S+FF + +G++D L WP+ K +L ++ Sbjct: 387 IWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVSLMLM 467
BLAST of SMED30000484 vs. Ensembl Mouse
Match: Traf2 (TNF receptor-associated factor 2 [Source:MGI Symbol;Acc:MGI:101835]) HSP 1 Score: 86.6557 bits (213), Expect = 5.389e-18 Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = -3 Query: 75 ELPVTPY----IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL 338 EL V+ Y IWKI+ FT+K Q+A +I S FY+ R GYKM L+VYL+G+G +GTH+S+FF + KG D L WP++ K TL +L Sbjct: 351 ELEVSTYDGVFIWKISDFTRKRQEAVAGRTPAIFSPAFYTSRYGYKMCLRVYLNGDGTGRGTHLSLFFVVMKGPNDALLQWPFNQKVTLMLL 442
BLAST of SMED30000484 vs. Ensembl Mouse
Match: Traf2 (TNF receptor-associated factor 2 [Source:MGI Symbol;Acc:MGI:101835]) HSP 1 Score: 86.6557 bits (213), Expect = 5.686e-18 Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = -3 Query: 75 ELPVTPY----IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL 338 EL V+ Y IWKI+ FT+K Q+A +I S FY+ R GYKM L+VYL+G+G +GTH+S+FF + KG D L WP++ K TL +L Sbjct: 344 ELEVSTYDGVFIWKISDFTRKRQEAVAGRTPAIFSPAFYTSRYGYKMCLRVYLNGDGTGRGTHLSLFFVVMKGPNDALLQWPFNQKVTLMLL 435
BLAST of SMED30000484 vs. Ensembl Mouse
Match: Traf5 (TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548]) HSP 1 Score: 80.4925 bits (197), Expect = 7.035e-17 Identity = 33/81 (40.74%), Postives = 55/81 (67.90%), Query Frame = -3 Query: 75 IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL 317 IWK+T + K ++A + +S+ S PFY+ R GY++ + YL+G+G KGTH+S++F + +G+FD L WP+ + TL +L Sbjct: 99 IWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLL 179
BLAST of SMED30000484 vs. Ensembl Mouse
Match: Traf5 (TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548]) HSP 1 Score: 80.4925 bits (197), Expect = 7.035e-17 Identity = 33/81 (40.74%), Postives = 55/81 (67.90%), Query Frame = -3 Query: 75 IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL 317 IWK+T + K ++A + +S+ S PFY+ R GY++ + YL+G+G KGTH+S++F + +G+FD L WP+ + TL +L Sbjct: 99 IWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLL 179
BLAST of SMED30000484 vs. Ensembl Mouse
Match: Traf5 (TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548]) HSP 1 Score: 82.4185 bits (202), Expect = 1.635e-16 Identity = 33/81 (40.74%), Postives = 55/81 (67.90%), Query Frame = -3 Query: 75 IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL 317 IWK+T + K ++A + +S+ S PFY+ R GY++ + YL+G+G KGTH+S++F + +G+FD L WP+ + TL +L Sbjct: 401 IWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLL 481
BLAST of SMED30000484 vs. UniProt/SwissProt
Match: sp|P39429|TRAF2_MOUSE (TNF receptor-associated factor 2 OS=Mus musculus OX=10090 GN=Traf2 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 3.977e-17 Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = -3 Query: 75 ELPVTPY----IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL 338 EL V+ Y IWKI+ FT+K Q+A +I S FY+ R GYKM L+VYL+G+G +GTH+S+FF + KG D L WP++ K TL +L Sbjct: 344 ELEVSTYDGVFIWKISDFTRKRQEAVAGRTPAIFSPAFYTSRYGYKMCLRVYLNGDGTGRGTHLSLFFVVMKGPNDALLQWPFNQKVTLMLL 435
BLAST of SMED30000484 vs. UniProt/SwissProt
Match: sp|Q12933|TRAF2_HUMAN (TNF receptor-associated factor 2 OS=Homo sapiens OX=9606 GN=TRAF2 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 3.539e-16 Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = -3 Query: 63 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCAND 320 +IWKI+ F +K Q+A +I S FY+ R GYKM L++YL+G+G +GTH+S+FF + KG D L WP++ K TL +L N+ Sbjct: 354 FIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNN 439
BLAST of SMED30000484 vs. UniProt/SwissProt
Match: sp|P70191|TRAF5_MOUSE (TNF receptor-associated factor 5 OS=Mus musculus OX=10090 GN=Traf5 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.410e-15 Identity = 33/81 (40.74%), Postives = 55/81 (67.90%), Query Frame = -3 Query: 75 IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL 317 IWK+T + K ++A + +S+ S PFY+ R GY++ + YL+G+G KGTH+S++F + +G+FD L WP+ + TL +L Sbjct: 407 IWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLL 487
BLAST of SMED30000484 vs. UniProt/SwissProt
Match: sp|O00463|TRAF5_HUMAN (TNF receptor-associated factor 5 OS=Homo sapiens OX=9606 GN=TRAF5 PE=1 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 1.542e-15 Identity = 39/98 (39.80%), Postives = 61/98 (62.24%), Query Frame = -3 Query: 39 IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDISA-----ETFKP 317 IWK+T + K ++A D +SI S FY+ R GY++ + YL+G+G +G+H+S++F + +G+FD L WP+ + TL +L D S ETFKP Sbjct: 407 IWKVTDYKMKKREAVDGHTVSIFSQSFYTSRCGYRLCARAYLNGDGSGRGSHLSLYFVVMRGEFDSLLQWPFRQRVTLMLL---DQSGKKNIMETFKP 501
BLAST of SMED30000484 vs. UniProt/SwissProt
Match: sp|P39428|TRAF1_MOUSE (TNF receptor-associated factor 1 OS=Mus musculus OX=10090 GN=Traf1 PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 1.040e-14 Identity = 35/96 (36.46%), Postives = 61/96 (63.54%), Query Frame = -3 Query: 39 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCAN--DISAETFKP 320 ++WKIT TK+ ++ +S+ S FY+ + GYK+ L++YL+G+G K TH+S+F + +G++D L WP+ NK T +L N + + + F+P Sbjct: 262 FLWKITNVTKRCHESVCGRTVSLFSPAFYTAKYGYKLCLRLYLNGDGSGKKTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAIDAFRP 357
BLAST of SMED30000484 vs. TrEMBL
Match: D5JG59 (TNF receptor-associated factor-2-like protein A OS=Dugesia japonica OX=6161 GN=TRAF-2A PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.611e-26 Identity = 92/273 (33.70%), Postives = 146/273 (53.48%), Query Frame = -3 Query: 39 EMR-IKCEHCNKTKTWIKIQNEHKNIKDEKVCKKFKRKCPNQYG-LEKVELKEHWGKYNKRKVDCPLRKWDAK-KKTVKEEMPQHLQMKIEEHA*I*MTALRENKLK-IDDIVIEVESHKILMTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGEL-PVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDIS---AETFKP 833 EMR + C++C T + H N +++C K+ C N KV LK+H +K++CP ++D K K KE++ +HL + H T+ NK+K ++ +I++ES L +I T+E FE+ ++ + ++I + I E K+ ++ I + +IWK T F + A ++S+TS FY+ GYKM L+VY G+G KGTH+SVFFA+ KG+FD+L WP+ K TL+IL S ++TFKP Sbjct: 36 EMRMVNCDYCGITMKSKDLNIIHLNPDRDELCSKYVGICSNNCNETRKVNLKDHLKICPNKKLECPFHQFDCKIDKMTKEKLMKHLDEEYFNH-----TSSLINKVKDLESKIIDLESE--LHNQILITKELFEMNKKSSESRLKIEKTIEELKKKAPATSIQTIDNKNVIFRNASFIWKFTDFEVRRVDAESGGRVSVTSDAFYTSEFGYKMCLRVYPAGDGVGKGTHLSVFFAIMKGEFDDLLSWPFKQKVTLSILDQESGSKPHSDTFKP 301
BLAST of SMED30000484 vs. TrEMBL
Match: D5JG60 (TNF receptor-associated factor-2-like protein B OS=Dugesia japonica OX=6161 GN=TRAF-2B PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.693e-21 Identity = 84/277 (30.32%), Postives = 131/277 (47.29%), Query Frame = -3 Query: 39 MR-IKCEHCNKTKTWIKIQNEHKNIKDEKVCKKFKRKCPNQYGLEK-VELKEHWGKYNKRKVDCPLRKWDAKKKTVKEEMPQHLQMKIEEHA*I*MTALRENKLKIDDIVIEVESHKIL-------MTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGELPVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILC----ANDISAETFKP 830 MR + C HC + + + H N+ EK+C K KCP + K V L +H +K+ V C + + KE++ +H + +H+ + M + K I ++ ++ IL +EI D ++ E + T+ + + E +IWKI F++ +A +ISITS FY+ GYKM +K+Y G+G KGTH+SVFF L +G+FD+L WP+ NK TL IL ND ++TFKP Sbjct: 143 MRLVSCTHCGEEMEYSNLTELHLNVHTEKLCAKLVGKCPYKCDNGKEVNLLDHRKSCSKKPVTCLFSEIGCNRVMTKEDLIKHNNEESLQHSRLLMKEIITMKNDISELKMKTLEFNILKIEFSKFQSEILDKIKSLEKIPRHTSPSTSSVRSSEEKTVYRNGV---------------FIWKIERFSELKSEAERGNRISITSDYFYTKEFGYKMSMKIYPAGDGVGKGTHLSVFFTLMRGEFDDLLQWPFKNKVTLTILDQKNKTND-HSDTFKP 403
BLAST of SMED30000484 vs. TrEMBL
Match: F1AGB4 (TNF receptor-associated factor (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 6.071e-20 Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = -3 Query: 63 PVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCAND 332 P P+IWKIT F +K Q+A+D TQ + S P YSW NGYK+ +++Y +G+G GTHISVF + +G +DEL WP+ L + D Sbjct: 12 PTAPFIWKITEFAEKLQRAKDGTQRILDSPPIYSWENGYKLGIRLYPNGDGNATGTHISVFIRVGRGDYDELLTWPFKQNMILTMKGQED 101
BLAST of SMED30000484 vs. TrEMBL
Match: C1LGV7 (TNF receptor-associated factor 3 OS=Schistosoma japonicum OX=6182 GN=TRAF3 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.161e-16 Identity = 75/282 (26.60%), Postives = 128/282 (45.39%), Query Frame = -3 Query: 9 CYEMRIKCEHCNKTKTWIKIQNEHKNIKDEKVCKKFKRKCPNQYGLEKVE---LKEHW-GKYNKRKVDCPLRKWDAKKKTVKEEMPQHLQMKIEEHA*I*MTALRENKLKIDDIVIEVESHKILMTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGELPVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCAN-DISAETFKPACVRIYPSFS 839 C + I+C+ C ++ E K+I C+++ CPN+ + + + EH + +++ + CP + + K +M QHL++ + +H L L + + + +E+ TEI R + E +R T T + P++WKI +++K AR Q ++ S PFY+ R GY+M L V L GNGE KG +SV+ L +G D L WP+S++ T ++ N +I+A KP I PS + Sbjct: 205 CPKRNIQCKFCG---AKFSVEKEAKHIS---YCREYPLPCPNKCEMTSIPRSLIPEHLKNECSRQNLRCPFNIHGCEYRGRKYKMDQHLELSLIKH-------LNLLNLSVQQMSLLIEAQTKTYTEI---RNSLEYQMKRIT-------------------------TLEQCFGPPFLWKIDSYSEKLNNARTGKQNALFSTPFYTHRFGYRMALSVSLYGNGEAKGKFMSVYACLFRGDHDSLLQWPFSHQLTFTLIDQNPEINAR--KPIVYTIKPSLT 443
BLAST of SMED30000484 vs. TrEMBL
Match: A0A4Z2D8H8 (TNF receptor-associated factor 4 OS=Schistosoma japonicum OX=6182 GN=EWB00_003737 PE=4 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.228e-16 Identity = 75/282 (26.60%), Postives = 128/282 (45.39%), Query Frame = -3 Query: 9 CYEMRIKCEHCNKTKTWIKIQNEHKNIKDEKVCKKFKRKCPNQYGLEKVE---LKEHW-GKYNKRKVDCPLRKWDAKKKTVKEEMPQHLQMKIEEHA*I*MTALRENKLKIDDIVIEVESHKILMTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGELPVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCAN-DISAETFKPACVRIYPSFS 839 C + I+C+ C ++ E K+I C+++ CPN+ + + + EH + +++ + CP + + K +M QHL++ + +H L L + + + +E+ TEI R + E +R T T + P++WKI +++K AR Q ++ S PFY+ R GY+M L V L GNGE KG +SV+ L +G D L WP+S++ T ++ N +I+A KP I PS + Sbjct: 205 CPKRNIQCKFCG---AKFSVEKEAKHIS---YCREYPLPCPNKCEMTSIPRSLIPEHLKNECSRQNLRCPFNIHGCEYRGRKYKMDQHLELSLIKH-------LNLLNLSVQQMSLLIEAQTKTYTEI---RNSLEYQMKRIT-------------------------TLEQCFGPPFLWKIDSYSEKLNNARTGKQNALFSTPFYTHRFGYRMALSVSLYGNGEAKGKFMSVYACLFRGDHDSLLQWPFSHQLTFTLIDQNPEINAR--KPIVYTIKPSLT 443
BLAST of SMED30000484 vs. Ensembl Cavefish
Match: traf2b (TNF receptor associated factor 2 [Source:NCBI gene;Acc:103028261]) HSP 1 Score: 83.9593 bits (206), Expect = 3.184e-17 Identity = 38/96 (39.58%), Postives = 63/96 (65.62%), Query Frame = -3 Query: 39 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDIS--AETFKP 320 ++WKI+ F+++ Q A ++ S FYS + GYKM L++YL+G+G +G+H+S+FF + +GK+D L WP+S K TL +L N+ + F+P Sbjct: 384 FVWKISDFSRRRQDALAGRAPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGSHLSLFFVVMRGKYDALLKWPFSQKVTLMLLDQNNREHIIDAFRP 479
BLAST of SMED30000484 vs. Ensembl Cavefish
Match: traf4a (TNF receptor associated factor 4 [Source:NCBI gene;Acc:103024022]) HSP 1 Score: 83.5741 bits (205), Expect = 4.390e-17 Identity = 63/274 (22.99%), Postives = 111/274 (40.51%), Query Frame = -3 Query: 39 CEHCNKTKTWIKIQNEHKNIKDEKVCKKFKRKCPNQYGLEKV-------ELKEHWGKYNKRKVDCPLRKWDAKKKTVKEEMPQHLQMKIEEHA*I*MTALRENKLKIDDIVIEVESHKILMTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGELPVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDIS-------AETFKP 818 C++C K + IQN + C +F +CPNQ G + +KE G V CP + K + K + +HL+ + H + + + + +I ++ E+E + + IWK+ +++K Q+A+ S PFY+ R GYK+++ +L+GNG +G+H+S++ + G++D L WP++ K T +IL +D S ETF P Sbjct: 195 CKYCGKEFVYDTIQNHQYH------CPRFPVQCPNQCGTPNIAREDLATHVKESCGS---ALVLCPFKDAGCKHRCPKLAIGRHLEETTKSHLTMMCSLVGRQRQEIIELRREMEELSVSHDGVL-------------------------------------------------IWKLNDYSRKLQEAKLHNNHEFFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSIYIRVLPGEYDNLLEWPFAYKVTFSILDQSDPSLSKPQHITETFNP 410
BLAST of SMED30000484 vs. Ensembl Cavefish
Match: ENSAMXT00000035169.1 (pep primary_assembly:Astyanax_mexicanus-2.0:9:3354744:3362219:1 gene:ENSAMXG00000029095.1 transcript:ENSAMXT00000035169.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 77.7962 bits (190), Expect = 9.428e-17 Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = -3 Query: 39 IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL---CANDISAETFKP 317 IWKI + ++ +A +S+ S PFY+ GYKM +VYL+G+G KGTH+S+FF + +G++D L WP+ K TL ++ A + FKP Sbjct: 7 IWKIRDYKRRKAEAVASKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVVMRGEYDALLPWPFKQKVTLMLMDQGPARKHLGDAFKP 102
BLAST of SMED30000484 vs. Ensembl Cavefish
Match: traf2a (TNF receptor-associated factor 2-like [Source:NCBI gene;Acc:103036375]) HSP 1 Score: 81.2629 bits (199), Expect = 1.862e-16 Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = -3 Query: 42 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCAN-----------DISAETFK 320 ++WKI+ F+KK Q A ++ S FY+ + GYKM L++YL+G+G +GTH+S+FF + +G D L WP++ K TL +L N DIS+ +F+ Sbjct: 312 FVWKISDFSKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLMLLDQNNREHIIDAFRPDISSSSFQ 415
BLAST of SMED30000484 vs. Ensembl Cavefish
Match: traf2a (TNF receptor-associated factor 2-like [Source:NCBI gene;Acc:103036375]) HSP 1 Score: 81.6481 bits (200), Expect = 2.144e-16 Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = -3 Query: 42 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCAN-----------DISAETFK 320 ++WKI+ F+KK Q A ++ S FY+ + GYKM L++YL+G+G +GTH+S+FF + +G D L WP++ K TL +L N DIS+ +F+ Sbjct: 425 FVWKISDFSKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLMLLDQNNREHIIDAFRPDISSSSFQ 528
BLAST of SMED30000484 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002130.1 (pep scaffold:Pmarinus_7.0:GL484662:8457:12718:-1 gene:ENSPMAG00000001936.1 transcript:ENSPMAT00000002130.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 80.1073 bits (196), Expect = 7.991e-17 Identity = 36/96 (37.50%), Postives = 60/96 (62.50%), Query Frame = -3 Query: 39 IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL---CANDISAETFKP 317 +WKI + ++ Q+A +S+ S PFY+ GYKM + YL+G+G +GTH+S+FF + +G++D L WP+ + TL++L A ++TF P Sbjct: 271 VWKIRDYARRKQEAASGRTLSLYSQPFYTSPFGYKMCARAYLNGDGVGRGTHLSLFFVVMRGEYDALLEWPFRRRVTLSLLDQGAARRHLSDTFTP 366
BLAST of SMED30000484 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000074.1 (pep scaffold:Pmarinus_7.0:GL482142:165593:173010:-1 gene:ENSPMAG00000000066.1 transcript:ENSPMAT00000000074.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 79.7221 bits (195), Expect = 1.296e-16 Identity = 36/96 (37.50%), Postives = 59/96 (61.46%), Query Frame = -3 Query: 39 IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL---CANDISAETFKP 317 +WKI + ++ Q A +S+ S PFY+ GY+M + YL+G+G +GTH+S+FF + +G++D L WP+ + TL +L A ++TFKP Sbjct: 328 VWKIRDYARRKQDAVSGRTLSLYSQPFYTSPFGYRMCARAYLNGDGVGRGTHLSLFFVVMRGEYDALLPWPFRQRVTLTLLDQGAARRQLSDTFKP 423
BLAST of SMED30000484 vs. Ensembl Nematostella
Match: EDO49464 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RG36]) HSP 1 Score: 84.7297 bits (208), Expect = 5.978e-18 Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = -3 Query: 39 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDIS--AETFKP 320 YIWKI +T+++Q+ SI S PFY R GYK +VY +G+G KG+H+S+FF L +G+FD L WP+ K T +L + + +TF+P Sbjct: 380 YIWKIDEYTRRYQEGVSGKTPSIYSPPFYVGRYGYKACARVYPNGDGMGKGSHLSLFFVLMRGEFDALLPWPFRQKVTFKLLDQDRVHDIGDTFRP 475
BLAST of SMED30000484 vs. Ensembl Nematostella
Match: EDO36181 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJA2]) HSP 1 Score: 75.485 bits (184), Expect = 9.548e-17 Identity = 36/95 (37.89%), Postives = 60/95 (63.16%), Query Frame = -3 Query: 39 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDISAETF-KP 320 ++W+I + +++K + +I+S FY+ R GYKM+LK +L+GNG+ KGTH+S+F + KG++D L WP+ K TL ++ D + KP Sbjct: 17 FVWRIRNYNDQYEKKQ-----TISSRLFYTSRYGYKMRLKSHLNGNGDGKGTHLSLFVQITKGEYDALLEWPFKRKITLYLIDQIDQQRHMYDKP 106
BLAST of SMED30000484 vs. Ensembl Nematostella
Match: EDO29145 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T4G8]) HSP 1 Score: 68.5514 bits (166), Expect = 1.111e-14 Identity = 30/83 (36.14%), Postives = 53/83 (63.86%), Query Frame = -3 Query: 75 YIWKITGFTKKWQKA-RDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL 320 ++WKI+ + ++ +A +++I S PFY+ + GYK++LK YL+G KGTH+S++ + KG +D L WP+ K T ++ Sbjct: 4 FLWKISNYKHQYDQAVASPEELAIFSPPFYTSQYGYKLRLKAYLNGRDRGKGTHLSLYIIIMKGDYDALLEWPFKQKITFYLI 86
BLAST of SMED30000484 vs. Ensembl Nematostella
Match: EDO32849 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7STV3]) HSP 1 Score: 74.3294 bits (181), Expect = 1.298e-14 Identity = 56/224 (25.00%), Postives = 103/224 (45.98%), Query Frame = -3 Query: 75 CPNQYG----LEKVELKEHWGKYNKR-KVDCPLRKWDAKKKTVKEEMPQHLQMKIEEHA*I*MTALRENKLKIDDIVIEVESHKILMTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGELPVTPY---IWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAIL 722 CPN+ + + +L EH K R K+ C + + +E+M +H++ +I H + + E K K+D+ + E H+ +M ++ D+R G+L + IW+I +T+K ++A+ ++ S F + ++GY++ V L+G+G+ KGTH+SVF ++ KG FD L WP+ + T +L Sbjct: 204 CPNKCDKTLTIPRGQLDEHIEKECPRAKLMCEFESLGCQHRCSREKMAKHMKSEIIGHVKMIFGVVLEQKEKLDNHAQKFEEHETIMKQV-DSR-------------------------------------VGDLEKIAHSQIIWRIEDYTRKLKEAKAGNAETLFSPTFTTSKHGYRLCASVCLNGDGKGKGTHMSVFVSVLKGAFDALLKWPFHYRVTFFLL 389
BLAST of SMED30000484 vs. Ensembl Nematostella
Match: EDO48394 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RJK8]) HSP 1 Score: 73.559 bits (179), Expect = 2.707e-14 Identity = 39/121 (32.23%), Postives = 66/121 (54.55%), Query Frame = -3 Query: 15 YIWKITGFTKKWQKA----------------RDETQIS---ITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDISAETFKPACVRIYPS 320 ++W+I + K++KA D+ ++ + SLPFY+ R GYKM+LK Y +G G+ KGTH+S+ + KG++D + WP+ K TL+++ +E ++ V IYP Sbjct: 322 FVWRICNYKDKYKKAVAFATNQEVKGGNSDSDDDISMAGDIMVSLPFYTSRYGYKMRLKAYPNGYGDGKGTHLSLSIRIMKGEYDAILEWPFRRKITLSLI----NQSEQWRSETVEIYPD 438
BLAST of SMED30000484 vs. Ensembl Medaka
Match: ENSORLT00000020861.2 (TNF receptor-associated factor 2 [Source:NCBI gene;Acc:101167626]) HSP 1 Score: 83.9593 bits (206), Expect = 4.069e-17 Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = -3 Query: 42 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCAN-----------DISAETFK 320 +IWKI+ FTKK Q A ++ S FY+ + GYKM L++YL+G+G +GTH+S+FF + +G D L WP++ K TL +L N DIS+ +F+ Sbjct: 422 FIWKISDFTKKRQDAMAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLMLLDQNNREHIIDAFRPDISSSSFQ 525
BLAST of SMED30000484 vs. Ensembl Medaka
Match: traf4a (TNF receptor associated factor 4 [Source:NCBI gene;Acc:101161428]) HSP 1 Score: 83.5741 bits (205), Expect = 4.218e-17 Identity = 64/271 (23.62%), Postives = 111/271 (40.96%), Query Frame = -3 Query: 39 CEHCNKTKTWIKIQNEHKNIKDEKVCKKFKRKCPNQYG---LEKVELKEHW-GKYNKRKVDCPLRKWDAKKKTVKEEMPQHLQMKIEEHA*I*MTALRENKLKIDDIVIEVESHKILMTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGELPVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDIS-------AETFKP 818 C++C K + IQN + C +F +CPNQ G + + +L H V CP + K + K + +HL+ + H + + + +I ++ E+E + + IWK+ +++K Q+A+ + S PFY+ R GYK+++ +L+GNG +G+H+SV+ + G++D L WP+S K T +IL +D S ETF P Sbjct: 188 CKYCGKEFVFDTIQNHQFH------CPRFPVQCPNQCGTPNIAREDLANHVKDNCGSALVLCPFKDAGCKHRCPKLAIGRHLEDTTKSHLTMMCNLVSRQRQEILELRREMEELSVSHDGVL-------------------------------------------------IWKLNDYSRKLQEAKLRSNHEFFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSYKVTFSILDQSDPSLSKPQHITETFNP 403
BLAST of SMED30000484 vs. Ensembl Medaka
Match: traf2b (TNF receptor associated factor 2 [Source:NCBI gene;Acc:101159764]) HSP 1 Score: 83.5741 bits (205), Expect = 4.643e-17 Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = -3 Query: 39 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDIS--AETFKP 320 ++WKIT F+ + Q+A ++ S FYS + GYKM L++YL+G+G +GTH+S+FF + + K+D L WP+S K TL +L N+ + F+P Sbjct: 376 FVWKITDFSHRRQEAVSGRAPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGTHLSLFFVVMRSKYDALLKWPFSQKVTLMLLDQNNREHIIDAFRP 471
BLAST of SMED30000484 vs. Ensembl Medaka
Match: traf2b (TNF receptor associated factor 2 [Source:NCBI gene;Acc:101159764]) HSP 1 Score: 83.5741 bits (205), Expect = 4.740e-17 Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = -3 Query: 39 YIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDIS--AETFKP 320 ++WKIT F+ + Q+A ++ S FYS + GYKM L++YL+G+G +GTH+S+FF + + K+D L WP+S K TL +L N+ + F+P Sbjct: 369 FVWKITDFSHRRQEAVSGRAPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGTHLSLFFVVMRSKYDALLKWPFSQKVTLMLLDQNNREHIIDAFRP 464
BLAST of SMED30000484 vs. Ensembl Medaka
Match: traf4a (TNF receptor associated factor 4 [Source:NCBI gene;Acc:101161428]) HSP 1 Score: 83.1889 bits (204), Expect = 5.336e-17 Identity = 64/271 (23.62%), Postives = 111/271 (40.96%), Query Frame = -3 Query: 39 CEHCNKTKTWIKIQNEHKNIKDEKVCKKFKRKCPNQYG---LEKVELKEHW-GKYNKRKVDCPLRKWDAKKKTVKEEMPQHLQMKIEEHA*I*MTALRENKLKIDDIVIEVESHKILMTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGELPVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCANDIS-------AETFKP 818 C++C K + IQN + C +F +CPNQ G + + +L H V CP + K + K + +HL+ + H + + + +I ++ E+E + + IWK+ +++K Q+A+ + S PFY+ R GYK+++ +L+GNG +G+H+SV+ + G++D L WP+S K T +IL +D S ETF P Sbjct: 195 CKYCGKEFVFDTIQNHQFH------CPRFPVQCPNQCGTPNIAREDLANHVKDNCGSALVLCPFKDAGCKHRCPKLAIGRHLEDTTKSHLTMMCNLVSRQRQEILELRREMEELSVSHDGVL-------------------------------------------------IWKLNDYSRKLQEAKLRSNHEFFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSYKVTFSILDQSDPSLSKPQHITETFNP 410
BLAST of SMED30000484 vs. Planmine SMEST
Match: SMESG000022654.1 (SMESG000022654.1) HSP 1 Score: 170.629 bits (431), Expect = 2.806e-46 Identity = 91/256 (35.55%), Postives = 146/256 (57.03%), Query Frame = -3 Query: 78 TCYEMRIKCEHCNKTKTWIKIQNEHKNIKDEKVCKKFKRKCPNQYGL-EKVELKEHWGKYNKRKVDCPLRKWDAKKKTVKEEMPQHLQMKIEEHA*I*MTALRENKLKIDDIVIEVESHKILMTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGELPVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAI 842 C KCE C WI I+ EH+N K+E++C ++ C N +KV+LKEHW + + V CPL ++ + + EM +H+ +H I M + ++ + E ++ K LM EI ++R+ FE ++ T I ME+ ++ + + + P + +LP TP+IWKITGF +K Q+A+D TQ ++ S P YSW NGYK+ +++Y +G+G GTHISVF ++ KG++DEL WP+ L + Sbjct: 2080 VCISREEKCEFCGAIDEWINIEKEHRNPKEEQICDLYEGICANHCNQKDKVKLKEHWNECIGKPVKCPLELFNCQAQLPIAEMQKHMIENSIKHTEIMMKTIGMIAWEMKSLRTETDAQKALMREILESRKNFEKSQAITPKKIAEMEEKIQQIISSIKDLETTSPISRKLPTTPFIWKITGFAEKLQRAKDGTQRTLDSPPVYSWGNGYKLGIRLYPNGDGNATGTHISVFVSVGKGEYDELLTWPFKQNMILTM 2335
BLAST of SMED30000484 vs. Planmine SMEST
Match: SMESG000023758.1 (SMESG000023758.1) HSP 1 Score: 159.844 bits (403), Expect = 1.546e-42 Identity = 90/261 (34.48%), Postives = 143/261 (54.79%), Query Frame = -3 Query: 63 TCYEMRIKCEHCNKTKTWIKIQNEHKNIKDEKVCKKFKRKCPNQYGL-EKVELKEHWGKYNKRKVDCPLRKWDAKKKTVKEEMPQHLQMKIEEHA*I*MTALRENKLKIDDIVIEVESHKILMTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGELPVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCAND 842 C + KCE C WIKI+ EH+N K+E++C ++ C N +KV+LKEHW + + + V CPL + + EM +H+ EH I M + ++ + E ++ K L+ EI ++R+ FE ++ T + +EK M+ M +++ A + P P+IWKIT F +K Q+A+D TQ + S P YSW+NGYK+ +++Y +G+G GTHISVF + +G +DEL WP+ L + D Sbjct: 3718 VCIKREEKCEFCGVIDEWIKIEMEHRNPKEEQICDLYEGTCANNCDKKDKVKLKEHWNECSGKPVKCPLELLKCQVRLPITEMQKHMMENSIEHTEIMMKTIGMLAWEVKSLRTENDAQKALIREILESRKNFERSQGNTLKKMAEIEKKMQQMTNSLKELETNSSIARKPPTAPFIWKITEFAEKLQRAKDGTQRILDSPPIYSWKNGYKLGIRLYPNGDGNATGTHISVFIRVGRGDYDELLTWPFKQNMILTMKGQED 3978 HSP 2 Score: 53.5286 bits (127), Expect = 2.743e-7 Identity = 21/45 (46.67%), Postives = 34/45 (75.56%), Query Frame = -3 Query: 78 MKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAI 212 MKL+VY +G+G KG ++SV+F LA+G++D WP++ K T++I Sbjct: 1 MKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTISI 45
BLAST of SMED30000484 vs. Planmine SMEST
Match: SMESG000010523.1 (SMESG000010523.1) HSP 1 Score: 159.458 bits (402), Expect = 2.055e-42 Identity = 90/260 (34.62%), Postives = 144/260 (55.38%), Query Frame = -3 Query: 63 CYEMRIKCEHCNKTKTWIKIQNEHKNIKDEKVCKKFKRKCPNQYGL-EKVELKEHWGKYNKRKVDCPLRKWDAKKKTVKEEMPQHLQMKIEEHA*I*MTALRENKLKIDDIVIEVESHKILMTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGELPVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCAND 839 C + KCE C T WIKI+ EH+N K+E++C ++ C N +KV+LKEHW + + + V CPL ++ + + EM +H+ EH I M + ++ + E ++ K ++ EI ++R+ FE ++ T + MEK M+ M +++ + P P+IWKIT F +K Q+A+D TQ + S P YSW NGYK+ +++Y +G+G GTHISVF + +G +DEL WP+ L + D Sbjct: 3867 CIKREEKCEFCGVTDEWIKIEMEHRNPKEEQICDLYEGVCANNCDKKDKVKLKEHWNECSGKPVKCPLELFNCQTQLPMAEMQKHMMENSIEHTEIMMKTIGMLAWEVKSLRTENDAQKAIIREILESRKNFEKSQGDTLKKMVEMEKKMQQMTNNIKELETNNSITRKHPTAPFIWKITEFAEKLQRAKDGTQRILDSPPIYSWENGYKLGIRLYPNGDGNATGTHISVFIRVGRGDYDELLTWPFKQNMILTMKGQED 4126 HSP 2 Score: 86.2705 bits (212), Expect = 9.332e-18 Identity = 38/84 (45.24%), Postives = 58/84 (69.05%), Query Frame = -3 Query: 78 VTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAI 329 + PY WKI G+ +K + A +E I ITS FY+ GY+MKL+VY +G+G KG ++SV+F LA+G++D WP++ K T++I Sbjct: 320 LAPYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTISI 403
BLAST of SMED30000484 vs. Planmine SMEST
Match: SMESG000010523.1 (SMESG000010523.1) HSP 1 Score: 159.458 bits (402), Expect = 2.137e-42 Identity = 90/260 (34.62%), Postives = 144/260 (55.38%), Query Frame = -3 Query: 63 CYEMRIKCEHCNKTKTWIKIQNEHKNIKDEKVCKKFKRKCPNQYGL-EKVELKEHWGKYNKRKVDCPLRKWDAKKKTVKEEMPQHLQMKIEEHA*I*MTALRENKLKIDDIVIEVESHKILMTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGELPVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCAND 839 C + KCE C T WIKI+ EH+N K+E++C ++ C N +KV+LKEHW + + + V CPL ++ + + EM +H+ EH I M + ++ + E ++ K ++ EI ++R+ FE ++ T + MEK M+ M +++ + P P+IWKIT F +K Q+A+D TQ + S P YSW NGYK+ +++Y +G+G GTHISVF + +G +DEL WP+ L + D Sbjct: 3917 CIKREEKCEFCGVTDEWIKIEMEHRNPKEEQICDLYEGVCANNCDKKDKVKLKEHWNECSGKPVKCPLELFNCQTQLPMAEMQKHMMENSIEHTEIMMKTIGMLAWEVKSLRTENDAQKAIIREILESRKNFEKSQGDTLKKMVEMEKKMQQMTNNIKELETNNSITRKHPTAPFIWKITEFAEKLQRAKDGTQRILDSPPIYSWENGYKLGIRLYPNGDGNATGTHISVFIRVGRGDYDELLTWPFKQNMILTMKGQED 4176 HSP 2 Score: 86.2705 bits (212), Expect = 9.090e-18 Identity = 38/84 (45.24%), Postives = 58/84 (69.05%), Query Frame = -3 Query: 78 VTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAI 329 + PY WKI G+ +K + A +E I ITS FY+ GY+MKL+VY +G+G KG ++SV+F LA+G++D WP++ K T++I Sbjct: 320 LAPYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTISI 403
BLAST of SMED30000484 vs. Planmine SMEST
Match: SMESG000010523.1 (SMESG000010523.1) HSP 1 Score: 159.458 bits (402), Expect = 2.281e-42 Identity = 90/260 (34.62%), Postives = 144/260 (55.38%), Query Frame = -3 Query: 63 CYEMRIKCEHCNKTKTWIKIQNEHKNIKDEKVCKKFKRKCPNQYGL-EKVELKEHWGKYNKRKVDCPLRKWDAKKKTVKEEMPQHLQMKIEEHA*I*MTALRENKLKIDDIVIEVESHKILMTEIFDTREAFELARQRTTDTXXXXXXXXXXXXXXXXXXXXXIPTAGELPVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAILCAND 839 C + KCE C T WIKI+ EH+N K+E++C ++ C N +KV+LKEHW + + + V CPL ++ + + EM +H+ EH I M + ++ + E ++ K ++ EI ++R+ FE ++ T + MEK M+ M +++ + P P+IWKIT F +K Q+A+D TQ + S P YSW NGYK+ +++Y +G+G GTHISVF + +G +DEL WP+ L + D Sbjct: 3866 CIKREEKCEFCGVTDEWIKIEMEHRNPKEEQICDLYEGVCANNCDKKDKVKLKEHWNECSGKPVKCPLELFNCQTQLPMAEMQKHMMENSIEHTEIMMKTIGMLAWEVKSLRTENDAQKAIIREILESRKNFEKSQGDTLKKMVEMEKKMQQMTNNIKELETNNSITRKHPTAPFIWKITEFAEKLQRAKDGTQRILDSPPIYSWENGYKLGIRLYPNGDGNATGTHISVFIRVGRGDYDELLTWPFKQNMILTMKGQED 4125 HSP 2 Score: 85.8853 bits (211), Expect = 9.589e-18 Identity = 38/84 (45.24%), Postives = 58/84 (69.05%), Query Frame = -3 Query: 78 VTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYKMKLKVYLDGNGEEKGTHISVFFALAKGKFDELQLWPYSNKTTLAI 329 + PY WKI G+ +K + A +E I ITS FY+ GY+MKL+VY +G+G KG ++SV+F LA+G++D WP++ K T++I Sbjct: 320 LAPYTWKIGGWAEKVKSAEEEKIIGITSHQFYTEIGGYRMKLRVYPNGDGVGKGKYLSVYFLLARGRYDGKLEWPFNRKVTISI 403 The following BLAST results are available for this feature:
BLAST of SMED30000484 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of SMED30000484 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of SMED30000484 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of SMED30000484 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of SMED30000484 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of SMED30000484 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of SMED30000484 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30000484 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30000484 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of SMED30000484 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of SMED30000484 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30000484 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of SMED30000484 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of SMED30000484 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30000484 ID=SMED30000484|Name=SMED30000484|organism=Schmidtea mediterranea sexual|type=transcript|length=1177bpback to top protein sequence of SMED30000484-orf-1 >SMED30000484-orf-1 ID=SMED30000484-orf-1|Name=SMED30000484-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=121bp MMKLIPTAGELPVTPYIWKITGFTKKWQKARDETQISITSLPFYSWRNGYback to top Annotated Terms
The following terms have been associated with this transcript:
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