SMED30000394

Overview
NameSMED30000394
Smed IDSMED30000394
Length (bp)1680
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30000394 (SMED30000394) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30000394 (SMED30000394) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30000394

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymal cellSMED30000394SMESG000025342.1 SMESG000025336.1 dd_Smed_v4_15857_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30000394 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001019:23092..26872 -8213
v31.000012:3555..5083 -5605
Homology
BLAST of SMED30000394 vs. Planmine SMEST
Match: SMESG000025344.1 (SMESG000025344.1)

HSP 1 Score: 869.381 bits (2245), Expect = 0.000e+0
Identity = 471/490 (96.12%), Postives = 482/490 (98.37%), Query Frame = -2
Query:  162 MESGGYFLNQRKEICLKFLISVPLFLFGMVYVTNYGFYVYQISPRGDRKDEYLDKINYSISFVKIVSIILICYNTQINHRFRNLRIKHKLEQPLIFYLICLPILLMSLIGVFVVILYYTFERSVKNPSHITYCSLVIFEYFLFIVLVIDINGFSDTGEEWFMNYFNSXXXXXXXXXXXXXICLNIIMILTDDFTNTMNRTTFVSLFSNHNFTIFDKTCYRTLVFLKKRAVITLSLVFIPFLVIPLKRNLTHLFRFKPKEDLPEDKTVLSMNKVSSITGGFTVGVFLTFIVIVHLLYVMQNVPQVIIASRIIKLLVSFFISCLLGIMITEIKISARLNSSQYLNVKNILIYLGAFGQFSVQITNIVVNIYNLQTNGNGLFESTKDILILTSNFVYXXXXXXXXXXXLFVLDGKAVSFPKNSWSIFFYSPINILILQIGVFTEYLTKSFYDEQNSFQIRMMEIGTMYFAIPLVILYRAICFIIILLILRPFK 1631
            MESGGYFLNQRKEICLKFLISVPLFLFGMVYVTNYGFYVYQISPRGDRKDEYLDKINYSISFVKIVSIILICYNTQINHRFRNLRIKHKLEQPLIFYLICLP+L +SL+G+FV+I +YTFE+S    ++I Y +LVIFEYFLFI+LVIDINGFSDTGEEWFMNYFNSMTIIITMTSVMIQICLNIIMILTDDFTNTMNRTTFVSLFSNHNFTIFDKTCYRTLVFLKKRAVITLSLVFIPFLVIPLKRNLTHLFRFKPKEDLPEDKTVLSMNKVSSITGGFTVGVFLTFIVIVHLLYVMQNVPQVIIASRIIKLLVSFFISCLLGIMITEIKISARLNSSQYLNVKNILIYLGAFGQFSVQITNIVVNIYNLQTNGNGLFESTKDILILTSNFVYLIETILMTTLMLFVLDGKAVSFPKNSWSIFFYSPINILILQIGVFTEYLTKSFYDEQNSFQIRMMEIGTMYFAIPLVILYRAICFIIILLILRPFK
Sbjct:    1 MESGGYFLNQRKEICLKFLISVPLFLFGMVYVTNYGFYVYQISPRGDRKDEYLDKINYSISFVKIVSIILICYNTQINHRFRNLRIKHKLEQPLIFYLICLPMLFISLMGLFVIIFHYTFEKS-GTSTNILYFALVIFEYFLFIILVIDINGFSDTGEEWFMNYFNSMTIIITMTSVMIQICLNIIMILTDDFTNTMNRTTFVSLFSNHNFTIFDKTCYRTLVFLKKRAVITLSLVFIPFLVIPLKRNLTHLFRFKPKEDLPEDKTVLSMNKVSSITGGFTVGVFLTFIVIVHLLYVMQNVPQVIIASRIIKLLVSFFISCLLGIMITEIKISARLNSSQYLNVKNILIYLGAFGQFSVQITNIVVNIYNLQTNGNGLFESTKDILILTSNFVYLIETILMTTLMLFVLDGKAVSFPKNSWSIFFYSPINILILQIGVFTEYLTKSFYDEQNSFQIRMMEIGTMYFAIPLVILYRAICFIIILLILRPFK 489          
BLAST of SMED30000394 vs. Planmine SMEST
Match: SMESG000025336.1 (SMESG000025336.1)

HSP 1 Score: 688.337 bits (1775), Expect = 0.000e+0
Identity = 370/492 (75.20%), Postives = 429/492 (87.20%), Query Frame = -2
Query:  162 MESGGYFLNQRKEICLKFLISVPLFLFGMVYVTNYGFYVYQISPRGDRKDEYLDKINYSISFVKIVSIILICYNTQINHRFRNLRIKHKLEQPLIFYLICLPILLMSLIGVFVVILYYTFERSVKNPSHITYCSLVIFEYFLFIVLVIDINGFSDTGEEWFMNYFNSXXXXXXXXXXXXXICLNIIMILTDDFTNTMNRTTFVSLFSNHNFTIFDKTCYRTLVFLKKRAVITLSLVFIPFLVIPLKRNLTHLFRFKPKEDLPEDKTVLSMNKVSSITGGFTVGVFLTFIVIVHL--LYVMQNVPQVIIASRIIKLLVSFFISCLLGIMITEIKISARLNSSQYLNVKNILIYLGAFGQFSVQITNIVVNIYNLQTNGNGLFESTKDILILTSNFVYXXXXXXXXXXXLFVLDGKAVSFPKNSWSIFFYSPINILILQIGVFTEYLTKSFYDEQNSFQIRMMEIGTMYFAIPLVILYRAICFIIILLILRPFK 1631
            MESGGYFLNQRKEICLKFLISVPLFLFGMVYVTNYGFYVY+I+P  +R D Y++KINYSISFVK+VSIILICYNT+INHRFRNLRIKHKLEQPLIFYLICLPILLMSLIGVFVVILYYTFERSVKNPSHITYCSLVIFEYFLFIVLVIDINGFSDTGEEWFMNYFNSMTIIITMTSV++QICLNIIMILT++F+N++N+    +L+SNH+FT FDKT Y  ++FLKKR VITLSL FIPFLVIPLKRNL HLF+FK K+DLPED+ +LSMNKVSSITG  TVGV++T I IV L    + +    + + SRIIK  +  F   LL IMITEIK+SARLNSSQYLNVKNILIYLGAFGQFS+ I  IVV+IYNL+ NG GLFE  ++IL+L S+F YLIET+L+TTLMLFVLDG+ + F +NSW+ FF++PINILILQ+ +F+EYLTK  Y ++NSFQIR++E GT+ FAI LV LYR+ICF+IIL +L+PFK
Sbjct:    1 MESGGYFLNQRKEICLKFLISVPLFLFGMVYVTNYGFYVYRITPNENRNDGYIEKINYSISFVKVVSIILICYNTKINHRFRNLRIKHKLEQPLIFYLICLPILLMSLIGVFVVILYYTFERSVKNPSHITYCSLVIFEYFLFIVLVIDINGFSDTGEEWFMNYFNSMTIIITMTSVIMQICLNIIMILTEEFSNSLNQVLHFNLYSNHSFTFFDKTSYNKIIFLKKRTVITLSLAFIPFLVIPLKRNLNHLFQFKTKDDLPEDQPILSMNKVSSITGSLTVGVYITLIFIVDLCNFVIHERGNYIYLTSRIIKAFLILFSIGLLAIMITEIKVSARLNSSQYLNVKNILIYLGAFGQFSISIAYIVVDIYNLEINGIGLFELIQNILLLVSSFEYLIETMLLTTLMLFVLDGETIFFLENSWTFFFHTPINILILQLSIFSEYLTKPVYGKENSFQIRIIEQGTLDFAIYLVYLYRSICFMIILFLLKPFK 492          
BLAST of SMED30000394 vs. Planmine SMEST
Match: SMESG000025342.1 (SMESG000025342.1)

HSP 1 Score: 506.908 bits (1304), Expect = 2.030e-178
Identity = 269/341 (78.89%), Postives = 299/341 (87.68%), Query Frame = -2
Query:  615 MESGGYFLNQRKEICLKFLISVPLFLFGMVYVTNYGFYVYQISPRGDRKDEYLDKINYSISFVKIVSIILICYNTQINHRFRNLRIKHKLEQPLIFYLICLPILLMSLIGVFVVILYYTFERSVKNPSHITYCSLVIFEYFLFIVLVIDINGFSDTGEEWFMNYFNSXXXXXXXXXXXXXICLNIIMILTDDFTNTMNRTTFVSLFSNHNFTIFDKTCYRTLVFLKKRAVITLSLVFIPFLVIPLKRNLTHLFRFKPKEDLPEDKTVLSMNKVSSITGGFTVGVFLTFIVIVHL--LYVMQNVPQVIIASRIIKLLVSFFISCLLGIMITEIKISARLNSS 1631
            MESGGYFLNQRKEICLKFLISVPLFLFGMVYVTNYGFYVY+ISP  +R D Y++KINYSISFVK+VSIILICYNT+INHRFRNLRIKHKL+QPLIFYLICLPILLMSLIGVFVVILYYTFERSVKNPSHITYCSLVIFEYFLFIVLVIDINGFSDTGEEWFMNYFNSMTIIITMTSV++QICLNIIMILTD+F N++N+    +L+SNH+FT FDKT Y  ++FLKKR VITLSL FIPFLVIPLKRNL HLF+FK K+DLPED+ +LSMNKVSSITG  TVGV++T I IV L    + +    + + SRIIK  +  F   LL IMITEIK+SARLNSS
Sbjct:    1 MESGGYFLNQRKEICLKFLISVPLFLFGMVYVTNYGFYVYRISPMENRNDGYIEKINYSISFVKVVSIILICYNTKINHRFRNLRIKHKLKQPLIFYLICLPILLMSLIGVFVVILYYTFERSVKNPSHITYCSLVIFEYFLFIVLVIDINGFSDTGEEWFMNYFNSMTIIITMTSVIMQICLNIIMILTDEFFNSLNQVLHFNLYSNHSFTFFDKTSYNKIIFLKKRTVITLSLAFIPFLVIPLKRNLNHLFQFKTKDDLPEDQPILSMNKVSSITGSLTVGVYITLIFIVDLCNFVIHERGNYIYLTSRIIKAFLILFSIGLLAIMITEIKVSARLNSS 341          
BLAST of SMED30000394 vs. Planmine SMEST
Match: SMESG000025346.1 (SMESG000025346.1)

HSP 1 Score: 379.407 bits (973), Expect = 3.384e-126
Identity = 247/499 (49.50%), Postives = 338/499 (67.74%), Query Frame = -2
Query:  162 MESGGYFLNQRKEICLKFLISVPLFLFGMVYVTNYGFYVYQISPRGDRKDEYLDKINYSISFVKIVSIILICYNTQINHRFRNLRIKHKLEQPLIFYLICLPILLMSLIGVFVVILYYTFERSVKNPSHITYCSLVIFEYFLFIVLVIDINGFSDTGEEWFMNYFNSXXXXXXXXXXXXXICLNIIMILTDDFTNTMNRTTFVSLFSNHNFTIFDKTCYRTLVFLKKRAVITLSLVFIPFLVIPLKRNLTHLFRFKPKEDLPEDKTVLSMNKVSSITGGFTVGVFLTFIVIVHLLYVMQNVPQ--VIIASRIIKLLVSFFISCLLGIMITEIKISARLNSSQYLNVKNILIYLGAFGQFSVQITNIVVNIYNL---QTNGNGLFESTKDILILTSNFVYXXXXXXXXXXXLFVLDGKAVSFPKNSWSIFFYSPINILILQIGV----FTEYLTKSFYDEQNSFQIRMMEIGTMYFAIPLVILYRAICFIIILLILRPFK 1631
            ME   +F N +KEI LK LIS+PL +  +V+VTNYG YVY ++  G++   Y   INYS+  VKI SI+LICYN QIN+RFRNLRIKHKL QPL FYLICLP++L+S+IG+ V+ L+  F+R++ + S   YC LVI EYFL+IVL+IDI+GF DTGEEW MNY NSMTIIIT+TS+ +QIC NII++LTD F+ T+NR       +N  +   ++     ++  KKRAVITL  VFIPFL+I L+ NL HL RFK K +  +++ V ++N+++  TGG T+ ++L   + V L++V++   Q  +  A RIIK+ +  F   LL IMI E+KIS+RL S  YL+VK+ILIYLG  GQF   I NI++ IY +   + N    FE+   I++ T + + +  T  +  L+    DGK++ F +NSW+ FFYSP+NILILQI +    F +   K+ Y   NSFQI +++ GT+ FAIPLV LYR IC II + IL PFK
Sbjct:    1 MEQNVHFNNHKKEIYLKLLISLPLLVMSLVFVTNYGLYVYMVTLEGNKNIAYDFMINYSMCLVKIFSIMLICYNRQINYRFRNLRIKHKLIQPLTFYLICLPMILVSIIGLVVLSLHEIFDRNLDDVSRFIYCCLVILEYFLYIVLIIDISGFRDTGEEWIMNYVNSMTIIITITSIAMQICYNIILLLTDCFSKTLNRPE-----NNKTYAFINRPLLVRIMDNKKRAVITLIAVFIPFLLISLQVNLNHLIRFKKKLESLKEEIVPNINQITFATGGLTIVIYLALTITVDLVHVLEKDHQRNIFAAGRIIKVFLVLFSIFLLVIMIIELKISSRLKSPNYLSVKSILIYLGTLGQFCSLIMNIMITIYKINAKEVNSEKRFETFLSIVLDTESLLEVTLTTTLVLLLS---DGKSIFFSRNSWTFFFYSPVNILILQISICFQNFGKINNKNVY---NSFQIDLIKHGTLTFAIPLVFLYRLICIIIFISILPPFK 488          
BLAST of SMED30000394 vs. Planmine SMEST
Match: SMESG000025369.1 (SMESG000025369.1)

HSP 1 Score: 142.895 bits (359), Expect = 1.712e-36
Identity = 138/500 (27.60%), Postives = 251/500 (50.20%), Query Frame = -2
Query:  186 AMESGGYFLNQRKEICLKFLISVPLFLFGMVYVTNYGFYVYQISPRGDRKDEYLDKINYSISFVKIVSIILICYNTQINHRFRNLRIKHKLEQPLIFYLICLPILLMSLIGVFVVILYYTFERSVKNPSHITYCSLVIFEYFLFIVLVIDINGFSDTGEEWFMNYFNSXXXXXXXXXXXXXICLNIIMILTDDFTNTMNRTTFVSLFSNHNF--TIFDKTCYRTLVFLKKRAVITLSLVFIPFLVIPLKRNLTHLFRFKPKEDLPEDKTVLSMNKVSSITGGFTVGVF----LTFIVIVH-LLYVMQNVPQVIIASRIIKLLVSFFISCLLGIMITEIKISARLNSSQYLNVKNILIYLGAFGQFSVQITNIVVNIYNLQTNGNGLFESTKDILILTSNFVYXXXXXXXXXXXL-------FVLDGKAVSFPKNSWSIFFYSPINILILQIGVFTEYLTKSFY---DEQNSFQIRMMEIGTMYFAIPLVILYRAICFIII 1634
             M          +   +KF+IS+ L +F +VY+TNY  ++ + +P  DR       I  ++  VK+ +I+LI YN +IN+RFRNLRI++ +E+P+I YLICLP+L++S+I + +  L  T +    +          I      I+ ++DI+G  +TGEEW M+Y N   IIIT+ ++ ++    +   ++  ++N + +   +S +  + F  +    +    +  +++ ++I L +V  P+L++ L +++ ++F+   K + P+  +V ++  + S++G  TV VF    L  I+  H   Y      + I   R    L   F+   +  MI EI++   +  +++ ++K + IY G FG     +  +  NI+  Q     +FE+T     L+ N  Y+I  +      +        +LD +   F K SWS  F SPI +L+ ++    E +  S Y        F+I ++ IG+  FA P+VI Y   C II+
Sbjct:   32 TMPQDSIVTQSNRNAVIKFMISIKLLIFSIVYLTNYSLFIVRFTPLKDRCIGIPKIITCAMVIVKLTNILLIIYNARINYRFRNLRIRNPVERPMILYLICLPLLVISIISISLSALNTTLKWLSDSIDMSVDFGCSILNLIAVILFILDISGCRNTGEEWLMSYVNFCIIIITICTIFMEAMKTLTFKMSSIYSNLIYKYFNISFYEENKFSKSFLTSSAINQIRVIEEDSIIMLLVVLFPYLIVCLDQHMKNMFKDVSKGNNPQTLSVRNLTFL-SLSGCITVVVFSIFELVLIIYTHGKPYTEWGCEEWI--YRGFDGLKFIFVVINIVSMIHEIRLWLTVEENRFYDLKKLFIYFGTFGNIIKAVILVFFNIF--QIVSQSVFENTT----LSVNCSYIIMHVEDIIQTVLMSSLILLILDKEPKPFLKISWSYEFCSPILLLMNRVN---EIIRCSLYMLIPNGKYFEINLILIGSYSFAQPIVIFYNVTCVIIL 519          
The following BLAST results are available for this feature:
BLAST of SMED30000394 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000394 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000394 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000394 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000394 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000394 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000394 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000394 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000394 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000394 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000394 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000394 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000394 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000394 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000025344.10.000e+096.12SMESG000025344.1[more]
SMESG000025336.10.000e+075.20SMESG000025336.1[more]
SMESG000025342.12.030e-17878.89SMESG000025342.1[more]
SMESG000025346.13.384e-12649.50SMESG000025346.1[more]
SMESG000025369.11.712e-3627.60SMESG000025369.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30000394 ID=SMED30000394|Name=SMED30000394|organism=Schmidtea mediterranea sexual|type=transcript|length=1680bp
TTGTTCTCCAGAATGTTCACTCACTGTAAAGAAATATTCAAAGAAATATT
TTATAAACAATAATTGAATGAAATCAAAAAGTATTCTATTTTAAAATTTA
TGTTCAACCTAATTAATAGGTAGAAGTGCAACGATGACAAAGTTCCATAA
GTACCCGATCATTTGAATGGTCTCAGAATCAAAAGAATTATAATGAAACA
AATCGCCCGGTAAAGAATAACTAAAGGTATTGCAAAGTACATTGTTCCAA
TCTCCATCATTCTTATTTGAAATGAATTCTGTTCATCGTAAAATGATTTC
GTGAGATATTCAGTAAAAACCCCAATTTGAAGTATTAGAATATTTATTGG
AGAATAAAAGAAAATTGACCAAGAATTCTTGGGAAAAGAAACTGCTTTAC
CATCGAGAACGAACAACATCAAAGTCGTCATCAAGATCGTTTCTATTAAA
TATACAAAATTAGAAGTTAATATTAAAATATCCTTGGTCGATTCAAACAA
CCCATTTCCATTTGTCTGAAGATTATAAATGTTGACTACAATATTGGTAA
TTTGGACACTAAATTGCCCAAAGGCTCCCAAATAGATGAGGATGTTTTTC
ACATTAAGATATTGAGAGGAGTTTAATCGGGCGGAAATCTTTATTTCCGT
TATCATAATGCCTAGCAGACAACTGATGAAAAAGGACACCAACAGTTTGA
TAATTCTGCTGGCAATAATAACTTGAGGAACATTTTGCATAACATATAAA
AGGTGAACTATTACGATAAATGTAAGAAATACCCCAACGGTAAAACCTCC
AGTAATTGAAGAAACTTTGTTCATTGACAGAACGGTTTTGTCTTCTGGTA
AATCTTCTTTTGGTTTGAATCGAAATAAATGAGTTAAATTTCTTTTCAGC
GGAATAACTAGGAAAGGAATAAACACCAAAGACAATGTTATCACTGCACG
TTTCTTAAGGAATACTAATGTTCTGTAACATGTTTTATCGAAAATTGTGA
AGTTATGATTTGAAAACAGACTTACAAACGTGGTGCGGTTCATGGTATTG
GTAAAATCATCGGTAAGAATCATAATAATATTAAGACATATTTGTATCAT
GACAGAAGTCATAGTTATGATGATCGTCATCGAGTTGAAGTAGTTCATGA
ACCATTCTTCGCCGGTGTCACTGAACCCGTTTATGTCGATCACCAAAACA
ATGAACAAGAAATATTCAAAGATCACAAGAGAACAATATGTAATGTGACT
TGGGTTTTTCACACTCCTTTCAAATGTATAATACAAAATAACGACAAATA
CCCCAATTAACGACATCAAGAGAATGGGCAGGCATATCAAATAGAATATC
AACGGTTGTTCCAACTTGTGTTTGATCCGTAAATTTCTGAACCGGTGATT
GATCTGTGTATTGTAACAGATCAGAATAATACTCACGATTTTTACGAAAC
TTATTGAGTAATTTATTTTGTCAAGATATTCATCCTTTCTATCCCCTCTT
GGGCTAATTTGGTATACATAGAAACCGTAATTCGTCACGTATACCATGCC
AAATAAAAATAAAGGAACCGAAATCAAAAATTTCAAACAAATTTCTTTTC
TTTGATTGAGAAAATACCCTCCAGATTCCATTGCTATTGAAAATAGAAAA
TTAATGAAGCCTTATTTTATTTATTTCAAT
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protein sequence of SMED30000394-orf-1

>SMED30000394-orf-1 ID=SMED30000394-orf-1|Name=SMED30000394-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=491bp
MESGGYFLNQRKEICLKFLISVPLFLFGMVYVTNYGFYVYQISPRGDRKD
EYLDKINYSISFVKIVSIILICYNTQINHRFRNLRIKHKLEQPLIFYLIC
LPILLMSLIGVFVVILYYTFERSVKNPSHITYCSLVIFEYFLFIVLVIDI
NGFSDTGEEWFMNYFNSMTIIITMTSVMIQICLNIIMILTDDFTNTMNRT
TFVSLFSNHNFTIFDKTCYRTLVFLKKRAVITLSLVFIPFLVIPLKRNLT
HLFRFKPKEDLPEDKTVLSMNKVSSITGGFTVGVFLTFIVIVHLLYVMQN
VPQVIIASRIIKLLVSFFISCLLGIMITEIKISARLNSSQYLNVKNILIY
LGAFGQFSVQITNIVVNIYNLQTNGNGLFESTKDILILTSNFVYLIETIL
MTTLMLFVLDGKAVSFPKNSWSIFFYSPINILILQIGVFTEYLTKSFYDE
QNSFQIRMMEIGTMYFAIPLVILYRAICFIIILLILRPFK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 60..79
NoneNo IPR availableTMHMMTMhelixcoord: 385..407
NoneNo IPR availableTMHMMTMhelixcoord: 166..188
NoneNo IPR availableTMHMMTMhelixcoord: 227..244
NoneNo IPR availableTMHMMTMhelixcoord: 309..331
NoneNo IPR availableTMHMMTMhelixcoord: 94..116
NoneNo IPR availableTMHMMTMhelixcoord: 420..442
NoneNo IPR availableTMHMMTMhelixcoord: 18..40
NoneNo IPR availableTMHMMTMhelixcoord: 346..368
NoneNo IPR availableTMHMMTMhelixcoord: 129..151
NoneNo IPR availableTMHMMTMhelixcoord: 463..485
NoneNo IPR availableTMHMMTMhelixcoord: 274..296