Dmd-2 splice form 1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30000372 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 1
Homology
BLAST of Dmd-2 splice form 1 vs. Ensembl Human
Match: DMRTA2 (DMRT like family A2 [Source:HGNC Symbol;Acc:HGNC:13908]) HSP 1 Score: 94.3597 bits (233), Expect = 1.763e-20 Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 EKY RTPKCARCRNHG VS LKGHKRYCRWKDC+CAKC LIAE Sbjct: 62 EKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAE 104
BLAST of Dmd-2 splice form 1 vs. Ensembl Human
Match: DMRTA2 (DMRT like family A2 [Source:HGNC Symbol;Acc:HGNC:13908]) HSP 1 Score: 94.3597 bits (233), Expect = 1.763e-20 Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 EKY RTPKCARCRNHG VS LKGHKRYCRWKDC+CAKC LIAE Sbjct: 62 EKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAE 104
BLAST of Dmd-2 splice form 1 vs. Ensembl Human
Match: DMRTA1 (DMRT like family A1 [Source:HGNC Symbol;Acc:HGNC:13826]) HSP 1 Score: 87.0409 bits (214), Expect = 5.523e-18 Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 1 Query: 145 YQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 Y RTPKCARCRNHG VS LKGHKR+CRW+DC CAKC LIAE Sbjct: 91 YPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAE 131
BLAST of Dmd-2 splice form 1 vs. Ensembl Human
Match: DMRT1 (doublesex and mab-3 related transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:2934]) HSP 1 Score: 80.8777 bits (198), Expect = 3.608e-16 Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 +K R PKCARCRNHGY SPLKGHKR+C W+DC C KC LIAE Sbjct: 68 KKSPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCNLIAE 110
BLAST of Dmd-2 splice form 1 vs. Ensembl Human
Match: DMRT2 (doublesex and mab-3 related transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:2935]) HSP 1 Score: 75.485 bits (184), Expect = 3.480e-15 Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 1 Query: 142 KYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 K RTPKCARCRNHG VS LKGHKR+CRW+DC CA C L+ E Sbjct: 116 KLSRTPKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVE 157
BLAST of Dmd-2 splice form 1 vs. Ensembl Celegans
Match: dmd-5 (DM (Doublesex/MAB-3) Domain family [Source:UniProtKB/TrEMBL;Acc:Q19291]) HSP 1 Score: 88.1965 bits (217), Expect = 1.181e-19 Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 E+ QRTPKCARCRNHG S LKGHKRYC+WKDC+CAKC LIAE Sbjct: 25 ERNQRTPKCARCRNHGTTSALKGHKRYCQWKDCMCAKCTLIAE 67
BLAST of Dmd-2 splice form 1 vs. Ensembl Celegans
Match: dmd-4 (DM (Doublesex/MAB-3) Domain family [Source:UniProtKB/TrEMBL;Acc:Q18248]) HSP 1 Score: 77.7962 bits (190), Expect = 3.495e-16 Identity = 80/245 (32.65%), Postives = 113/245 (46.12%), Query Frame = 1 Query: 148 QRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAEXXXXXXXXXXXXXXXXXXXXXINDFVMYQNEEI-VYPSDSKKNIS-------DFQDEKTEPKPLTEQCGNSSTLHPQISESEIVAKSQCIWNSINFPITKKLLNVSSHMTSEKKFSVSNLLHSSPMISTYDPILYLKKSFPHISNQILQLVLEISHGNLWLATNLLIRQFFNFERLILPRLQSDFMKTSFLNQIGPTNIRSLITP 858 +R PKCARCRNHG VS LKGHKR+C++K+C C KC LIAERQRVMAAQVAL+R+QA E+ + + I P N + D+ DE+ E KP T P++++L+ + E + +S++ PI L F +L+LVLE HGN+ A I F N R+ F + ++ + P N+ + I P Sbjct: 17 ERKPKCARCRNHGLVSWLKGHKRHCKYKECACEKCNLIAERQRVMAAQVALKRRQATEDAIALGLRVVAGQAIDRLPQGPVWNTAGGEDEDMDYLDEEIEEKPPT-------------------------------PVSEELVPLKRKKVEE-----------TYELSSFSPIELLMTLFCEHEKHVLELVLEACHGNVLQA----IEHFANVRRVKNINQMKLFAAATRMDHVFP-NMTNFILP 214
BLAST of Dmd-2 splice form 1 vs. Ensembl Celegans
Match: dmd-10 (DM (Doublesex/MAB-3) Domain family [Source:UniProtKB/TrEMBL;Acc:G5EEJ1]) HSP 1 Score: 57.3806 bits (137), Expect = 4.222e-9 Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1 Query: 148 QRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 +R P C +C HG S LKGHKR C +++C CAKCA+++E Sbjct: 35 KRVPNCQKCGQHGRKSRLKGHKRSCPFRECPCAKCAVVSE 74
BLAST of Dmd-2 splice form 1 vs. Ensembl Celegans
Match: dmd-3 (DM (Doublesex/MAB-3) Domain family [Source:UniProtKB/TrEMBL;Acc:Q9XWN9]) HSP 1 Score: 54.6842 bits (130), Expect = 7.259e-9 Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1 Query: 136 FEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 ++ +R P C RC H V+ LKGHKR C ++DC CAKC ++ E Sbjct: 14 VDRDERRPNCQRCAQHSVVNRLKGHKRACPFRDCFCAKCQVVVE 57
BLAST of Dmd-2 splice form 1 vs. Ensembl Celegans
Match: dmd-3 (DM (Doublesex/MAB-3) Domain family [Source:UniProtKB/TrEMBL;Acc:Q9XWN9]) HSP 1 Score: 53.9138 bits (128), Expect = 5.214e-8 Identity = 21/40 (52.50%), Postives = 27/40 (67.50%), Query Frame = 1 Query: 148 QRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 +R P C RC H V+ LKGHKR C ++DC CAKC ++ E Sbjct: 112 ERRPNCQRCAQHSVVNRLKGHKRACPFRDCFCAKCQVVVE 151
BLAST of Dmd-2 splice form 1 vs. Ensembl Fly
Match: dmrt99B (gene:FBgn0039683 transcript:FBtr0085454) HSP 1 Score: 97.8265 bits (242), Expect = 6.469e-22 Identity = 41/57 (71.93%), Postives = 43/57 (75.44%), Query Frame = 1 Query: 97 LKCLQPRQMFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 L L P E+YQRTPKCARCRNHG VS LKGHKRYCRW+DCVCAKC LIAE Sbjct: 19 LGALPPAFFLRAASERYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAE 75
BLAST of Dmd-2 splice form 1 vs. Ensembl Fly
Match: dmrt11E (gene:FBgn0030477 transcript:FBtr0073768) HSP 1 Score: 70.4774 bits (171), Expect = 4.239e-13 Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1 Query: 124 FCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 C+ + RTPKCARCRNHG +S +KGHKR CRW++C C C L+ + Sbjct: 109 ICQRERRLLRTPKCARCRNHGVISCVKGHKRLCRWRECCCPNCQLVVD 156
BLAST of Dmd-2 splice form 1 vs. Ensembl Fly
Match: dmrt93B (gene:FBgn0038851 transcript:FBtr0084007) HSP 1 Score: 66.2402 bits (160), Expect = 7.913e-12 Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1 Query: 151 RTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 R PKCARCRNHG +S L+GHK+ C +K+C CAKC LI E Sbjct: 39 RVPKCARCRNHGIISELRGHKKLCTYKNCKCAKCVLIFE 77
BLAST of Dmd-2 splice form 1 vs. Ensembl Fly
Match: dsx (gene:FBgn0000504 transcript:FBtr0330074) HSP 1 Score: 59.3066 bits (142), Expect = 2.966e-9 Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 1 Query: 157 PKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 P CARCRNHG LKGHKRYC+++ C C KC L A+ Sbjct: 42 PNCARCRNHGLKITLKGHKRYCKFRYCTCEKCRLTAD 78
BLAST of Dmd-2 splice form 1 vs. Ensembl Fly
Match: dsx (gene:FBgn0000504 transcript:FBtr0330073) HSP 1 Score: 58.9214 bits (141), Expect = 3.337e-9 Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 1 Query: 157 PKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 P CARCRNHG LKGHKRYC+++ C C KC L A+ Sbjct: 42 PNCARCRNHGLKITLKGHKRYCKFRYCTCEKCRLTAD 78
BLAST of Dmd-2 splice form 1 vs. Ensembl Zebrafish
Match: dmrta2 (DMRT-like family A2 [Source:NCBI gene;Acc:474350]) HSP 1 Score: 95.5153 bits (236), Expect = 3.851e-21 Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 EKY RTPKCARCRNHG VS LKGHKRYCRWKDC+CAKC LIAE Sbjct: 51 EKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAE 93
BLAST of Dmd-2 splice form 1 vs. Ensembl Zebrafish
Match: dmrt1 (doublesex and mab-3 related transcription factor 1 [Source:NCBI gene;Acc:402923]) HSP 1 Score: 78.5666 bits (192), Expect = 5.261e-17 Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 Query: 133 NFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 + K R PKC+RCRNHG+VSPLKGHKR+C W+DC C KC LIAE Sbjct: 12 SIRKPSRMPKCSRCRNHGFVSPLKGHKRFCNWRDCQCQKCRLIAE 56
BLAST of Dmd-2 splice form 1 vs. Ensembl Zebrafish
Match: dmrt1 (doublesex and mab-3 related transcription factor 1 [Source:NCBI gene;Acc:402923]) HSP 1 Score: 78.5666 bits (192), Expect = 5.620e-17 Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 Query: 133 NFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 + K R PKC+RCRNHG+VSPLKGHKR+C W+DC C KC LIAE Sbjct: 12 SIRKPSRMPKCSRCRNHGFVSPLKGHKRFCNWRDCQCQKCRLIAE 56
BLAST of Dmd-2 splice form 1 vs. Ensembl Zebrafish
Match: dmrt1 (doublesex and mab-3 related transcription factor 1 [Source:NCBI gene;Acc:402923]) HSP 1 Score: 78.5666 bits (192), Expect = 1.150e-16 Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 Query: 133 NFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 + K R PKC+RCRNHG+VSPLKGHKR+C W+DC C KC LIAE Sbjct: 12 SIRKPSRMPKCSRCRNHGFVSPLKGHKRFCNWRDCQCQKCRLIAE 56
BLAST of Dmd-2 splice form 1 vs. Ensembl Zebrafish
Match: dmrt1 (doublesex and mab-3 related transcription factor 1 [Source:NCBI gene;Acc:402923]) HSP 1 Score: 78.5666 bits (192), Expect = 1.171e-16 Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 Query: 133 NFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 + K R PKC+RCRNHG+VSPLKGHKR+C W+DC C KC LIAE Sbjct: 12 SIRKPSRMPKCSRCRNHGFVSPLKGHKRFCNWRDCQCQKCRLIAE 56
BLAST of Dmd-2 splice form 1 vs. Ensembl Xenopus
Match: dynll1 (dynein light chain LC8-type 1 [Source:Xenbase;Acc:XB-GENE-854521]) HSP 1 Score: 99.7525 bits (247), Expect = 1.516e-22 Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 1 Query: 106 LQPRQMFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 L+ Q+ R EKY RTPKCARCRNHG VS LKGHKRYCRWKDC+CAKC LIAE Sbjct: 30 LRGPQLLLRAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAE 83
BLAST of Dmd-2 splice form 1 vs. Ensembl Xenopus
Match: dmrta1 (DMRT like family A1 [Source:NCBI gene;Acc:779901]) HSP 1 Score: 88.5817 bits (218), Expect = 1.083e-18 Identity = 93/237 (39.24%), Postives = 119/237 (50.21%), Query Frame = 1 Query: 145 YQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAEXXXXXXXXXXXXXXXXXXXXXINDF--VMYQNEEIVYPSD--------SKKNISDFQDEKTEPKPLTEQCGNSSTLH---PQISESEIV--------------AKSQCIWNS--------INFPITKKLLNVSSHMTSEKKFSVSNLLHSSPMIST--YDPILYLKKSFPHISNQILQLVLEISHGNLWLATNLLI 744 Y RTPKCARCRNHG VS LKGHKR+CRW+DC CAKC LIAERQRVMAAQVALRRQQAQEE E+ D +Y E P S++ D EKTE E+ SS PQ S S IV K +CI +S + P + ++ S E +S P++ + DP+ L+K FP+ LQ +L+ G++ A ++ Sbjct: 77 YPRTPKCARCRNHGVVSALKGHKRFCRWRDCSCAKCTLIAERQRVMAAQVALRRQQAQEECEVRDVQHFLYPGGERETPGTRAQTLQIISREENKDETSEKTE--QTYERIPTSSIFSHSLPQPSPSGIVNACHILKSAGPENSNKDECIQSSGSEERSEGADSPRSLSSCDLESGNECEWPKDLSASSSKIPVVPSRQRDPLEILRKVFPNQKQSSLQSILQYCKGDVVQAIEFVL 311
BLAST of Dmd-2 splice form 1 vs. Ensembl Xenopus
Match: DMRT1 (doublesex and mab-3 related transcription factor 1 [Source:NCBI gene;Acc:100488257]) HSP 1 Score: 82.4185 bits (202), Expect = 6.008e-17 Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 +K R PKCARCRNHGY SPLKGHKR+C W+DC C KC+LIAE Sbjct: 24 KKSPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCSLIAE 66
BLAST of Dmd-2 splice form 1 vs. Ensembl Xenopus
Match: kdm2b (lysine (K)-specific demethylase 2B [Source:Xenbase;Acc:XB-GENE-990506]) HSP 1 Score: 77.7962 bits (190), Expect = 5.367e-15 Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 1 Query: 142 KYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 K RTPKCARCRNHG VS LKGHKR+CRW+DC CA C L+ E Sbjct: 90 KLSRTPKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVE 131
BLAST of Dmd-2 splice form 1 vs. Ensembl Xenopus
Match: st3gal4 (ST3 beta-galactoside alpha-2,3-sialyltransferase 4 [Source:Xenbase;Acc:XB-GENE-963280]) HSP 1 Score: 77.0258 bits (188), Expect = 7.528e-15 Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 1 Query: 148 QRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 QRTPKCARCRNHG +S LKGHKRYCR+KDC C KC LI E Sbjct: 23 QRTPKCARCRNHGVLSWLKGHKRYCRFKDCTCEKCILIIE 62
BLAST of Dmd-2 splice form 1 vs. Ensembl Mouse
Match: Dmrta2 (doublesex and mab-3 related transcription factor like family A2 [Source:MGI Symbol;Acc:MGI:2653629]) HSP 1 Score: 93.9745 bits (232), Expect = 1.799e-20 Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 EKY RTPKCARCRNHG VS LKGHKRYCRWKDC+CAKC LIAE Sbjct: 61 EKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAE 103
BLAST of Dmd-2 splice form 1 vs. Ensembl Mouse
Match: Dmrta1 (doublesex and mab-3 related transcription factor like family A1 [Source:MGI Symbol;Acc:MGI:2653627]) HSP 1 Score: 86.2705 bits (212), Expect = 5.608e-18 Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 1 Query: 145 YQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 Y RTPKCARCRNHG VS LKGHKR+CRW+DC CAKC LIAE Sbjct: 80 YPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAE 120
BLAST of Dmd-2 splice form 1 vs. Ensembl Mouse
Match: Dmrt1 (doublesex and mab-3 related transcription factor 1 [Source:MGI Symbol;Acc:MGI:1354733]) HSP 1 Score: 81.2629 bits (199), Expect = 4.511e-17 Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 +K R PKCARCRNHGY SPLKGHKR+C W+DC C KC+LIAE Sbjct: 66 KKSPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCSLIAE 108
BLAST of Dmd-2 splice form 1 vs. Ensembl Mouse
Match: Dmrt1 (doublesex and mab-3 related transcription factor 1 [Source:MGI Symbol;Acc:MGI:1354733]) HSP 1 Score: 82.0333 bits (201), Expect = 7.825e-17 Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 +K R PKCARCRNHGY SPLKGHKR+C W+DC C KC+LIAE Sbjct: 66 KKSPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCSLIAE 108
BLAST of Dmd-2 splice form 1 vs. Ensembl Mouse
Match: Dmrt2 (doublesex and mab-3 related transcription factor 2 [Source:MGI Symbol;Acc:MGI:1330307]) HSP 1 Score: 78.1814 bits (191), Expect = 2.905e-15 Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 1 Query: 142 KYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 K RTPKCARCRNHG VS LKGHKR+CRW+DC CA C L+ E Sbjct: 116 KLSRTPKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVE 157
BLAST of Dmd-2 splice form 1 vs. UniProt/SwissProt
Match: sp|A4QNP7|DMTA2_XENTR (Doublesex- and mab-3-related transcription factor A2 OS=Xenopus tropicalis OX=8364 GN=dmrta2 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 8.030e-22 Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 1 Query: 106 LQPRQMFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 L+ Q+ R EKY RTPKCARCRNHG VS LKGHKRYCRWKDC+CAKC LIAE Sbjct: 30 LRGPQLLLRAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAE 83
BLAST of Dmd-2 splice form 1 vs. UniProt/SwissProt
Match: sp|Q2MJB4|DMTA2_XENLA (Doublesex- and mab-3-related transcription factor A2 OS=Xenopus laevis OX=8355 GN=dmrta2 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.425e-21 Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 1 Query: 106 LQPRQMFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 L+ Q+ R EKY RTPKCARCRNHG VS LKGHKRYCRWKDC+CAKC LIAE Sbjct: 30 LRGPQLLLRAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAE 83
BLAST of Dmd-2 splice form 1 vs. UniProt/SwissProt
Match: sp|Q5UU75|DMTA2_DANRE (Doublesex- and mab-3-related transcription factor A2 OS=Danio rerio OX=7955 GN=dmrta2 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.907e-20 Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 EKY RTPKCARCRNHG VS LKGHKRYCRWKDC+CAKC LIAE Sbjct: 51 EKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAE 93
BLAST of Dmd-2 splice form 1 vs. UniProt/SwissProt
Match: sp|A6QQ94|DMTA2_BOVIN (Doublesex- and mab-3-related transcription factor A2 OS=Bos taurus OX=9913 GN=DMRTA2 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 7.860e-20 Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 EKY RTPKCARCRNHG VS LKGHKRYCRWKDC+CAKC LIAE Sbjct: 61 EKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAE 103
BLAST of Dmd-2 splice form 1 vs. UniProt/SwissProt
Match: sp|Q96SC8|DMTA2_HUMAN (Doublesex- and mab-3-related transcription factor A2 OS=Homo sapiens OX=9606 GN=DMRTA2 PE=2 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 8.468e-20 Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 EKY RTPKCARCRNHG VS LKGHKRYCRWKDC+CAKC LIAE Sbjct: 62 EKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAE 104
BLAST of Dmd-2 splice form 1 vs. TrEMBL
Match: R4PV69 (Dmd-2 splice form 1 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 2.358e-69 Identity = 127/129 (98.45%), Postives = 128/129 (99.22%), Query Frame = 1 Query: 4 LENSNSFNNTKINLSSVESIIDNEPKDFKSNLKCLQPRQMFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAEXXXXXXXXXXXXXXXXXXXXXINDFVMYQNEEIVYPSDSKK 390 +ENSNSFNNTKINLSSVESIIDNEPKDFKSNLKCLQPRQMFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAERQRVMAAQVALRRQQAQEEQEINDFVMYQNEEIVYP DSKK Sbjct: 1 MENSNSFNNTKINLSSVESIIDNEPKDFKSNLKCLQPRQMFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAERQRVMAAQVALRRQQAQEEQEINDFVMYQNEEIVYPPDSKK 129
BLAST of Dmd-2 splice form 1 vs. TrEMBL
Match: R4PJK4 (Dmd-2 splice form 2 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.756e-46 Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1 Query: 4 LENSNSFNNTKINLSSVESIIDNEPKDFKSNLKCLQPRQMFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWK 231 +ENSNSFNNTKINLSSVESIIDNEPKDFKSNLKCLQPRQMFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWK Sbjct: 1 MENSNSFNNTKINLSSVESIIDNEPKDFKSNLKCLQPRQMFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWK 76
BLAST of Dmd-2 splice form 1 vs. TrEMBL
Match: K1RAP5 (Doublesex-and mab-3-related transcription factor A2 OS=Crassostrea gigas OX=29159 GN=CGI_10015952 PE=4 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 3.095e-22 Identity = 91/217 (41.94%), Postives = 125/217 (57.60%), Query Frame = 1 Query: 121 MFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAEXXXXXXXXXXXXXXXXXXXXXINDFVMYQN---------EEIVYPSDSKKNI-SDFQDEKTEPKPLTEQCGNSSTLHP--QISESEIVAKSQCIWNSINFPITKKLLNVSSHMTSE-KKFSVS----NLLHSSPMISTYDPILYLKKSFPHISNQILQLVLEISHGNL 720 +F R ++Y RTPKCARCRNHG VS LKGHKRYCRW+DCVCAKC LIAERQRVMAAQVALRRQQAQEE E + M E I D+KK + + D + P ++ +S T P + S ++ ++ +S + P + KL + S + + F S LL + S +PI L++ FPH+ +LQL+L+ +G++ Sbjct: 14 VFMRASDRYPRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEENEARELGMLYGPNGLLQLNPETITMFPDAKKVVDTSGSDREDGPATKRQKLDSSRTDSPVSRCSSEDMNERTHSPADSTSPPTSPKLADPPSPSDDKPEPFPKSPFEEGLLAGN---SKKNPIEMLQRIFPHMKRSVLQLILQGCNGDV 227
BLAST of Dmd-2 splice form 1 vs. TrEMBL
Match: A7UD85 (Doublesex and mab-3 related transcription factor-like protein OS=Crassostrea gigas OX=29159 GN=DMl PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 3.285e-22 Identity = 91/217 (41.94%), Postives = 125/217 (57.60%), Query Frame = 1 Query: 121 MFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAEXXXXXXXXXXXXXXXXXXXXXINDFVMYQN---------EEIVYPSDSKKNI-SDFQDEKTEPKPLTEQCGNSSTLHP--QISESEIVAKSQCIWNSINFPITKKLLNVSSHMTSE-KKFSVS----NLLHSSPMISTYDPILYLKKSFPHISNQILQLVLEISHGNL 720 +F R ++Y RTPKCARCRNHG VS LKGHKRYCRW+DCVCAKC LIAERQRVMAAQVALRRQQAQEE E + M E I D+KK + + D + P ++ +S T P + S ++ ++ +S + P + KL + S + + F S LL + S +PI L++ FPH+ +LQL+L+ +G++ Sbjct: 14 VFMRASDRYPRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEENEARELGMLYGPNGLLQLNPETITMFPDAKKVVDTSGSDREDGPATKRQKLDSSRTDSPVSRCSSEDMNERTHSPADSTSPPTSPKLADPPSPSDDKPEPFPKSPFEEGLLAGN---SKKNPIEMLQRIFPHMKRSVLQLILQGCNGDV 227
BLAST of Dmd-2 splice form 1 vs. TrEMBL
Match: A0A5N5SJ83 (Doublesex-and mab-3-related transcription factor A2 OS=Armadillidium nasatum OX=96803 GN=dmrta2_0 PE=4 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 4.200e-21 Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 1 Query: 112 PRQMFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 P +F R E+YQRTPKCARCRNHG VS LKGHKRYCRW+DCVCAKC LIAE Sbjct: 17 PPALFLRASERYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAE 68
BLAST of Dmd-2 splice form 1 vs. Ensembl Cavefish
Match: dmrta2 (DMRT like family A2 [Source:NCBI gene;Acc:103023395]) HSP 1 Score: 95.1301 bits (235), Expect = 4.381e-21 Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 EKY RTPKCARCRNHG VS LKGHKRYCRWKDC+CAKC LIAE Sbjct: 55 EKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAE 97
BLAST of Dmd-2 splice form 1 vs. Ensembl Cavefish
Match: DMRTA1 (doublesex- and mab-3-related transcription factor A2 [Source:NCBI gene;Acc:103021351]) HSP 1 Score: 82.0333 bits (201), Expect = 5.863e-17 Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 Query: 145 YQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 + RTPKCARCRNHG +S LKGHKR CRW++C CA+CALIAE Sbjct: 28 FPRTPKCARCRNHGVLSALKGHKRACRWRECACARCALIAE 68
BLAST of Dmd-2 splice form 1 vs. Ensembl Cavefish
Match: DMRTA1 (doublesex- and mab-3-related transcription factor A2 [Source:NCBI gene;Acc:103021351]) HSP 1 Score: 82.0333 bits (201), Expect = 9.045e-17 Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 Query: 145 YQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 + RTPKCARCRNHG +S LKGHKR CRW++C CA+CALIAE Sbjct: 42 FPRTPKCARCRNHGVLSALKGHKRACRWRECACARCALIAE 82
BLAST of Dmd-2 splice form 1 vs. Ensembl Cavefish
Match: dmrt2a (doublesex- and mab-3-related transcription factor 2 [Source:NCBI gene;Acc:103040902]) HSP 1 Score: 79.7221 bits (195), Expect = 5.664e-16 Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1 Query: 124 FCRNFEK-YQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 C F+K RTPKCARCRNHG VS LKGHKR+CRW+DC CA C L+ E Sbjct: 1 MCNTFQKKLSRTPKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVE 49
BLAST of Dmd-2 splice form 1 vs. Ensembl Cavefish
Match: dmrt1 (doublesex- and mab-3-related transcription factor 1 [Source:NCBI gene;Acc:103041212]) HSP 1 Score: 77.411 bits (189), Expect = 1.053e-15 Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 Query: 151 RTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 R PKC+RCRNHG+VSPLKGHKR+C W+DC C KC LI+E Sbjct: 30 RMPKCSRCRNHGFVSPLKGHKRFCNWRDCQCQKCKLISE 68
BLAST of Dmd-2 splice form 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004009.1 (pep scaffold:Pmarinus_7.0:GL483432:15080:15595:1 gene:ENSPMAG00000003668.1 transcript:ENSPMAT00000004009.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 95.5153 bits (236), Expect = 4.012e-24 Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 1 Query: 112 PRQMFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 P + R +KYQRTPKCARCRNHG VS LKGHKRYCRW+DC+CAKC LIAE Sbjct: 37 PHSLLLRAADKYQRTPKCARCRNHGVVSALKGHKRYCRWRDCLCAKCTLIAE 88
BLAST of Dmd-2 splice form 1 vs. Ensembl Sea Lamprey
Match: dmrt2b (doublesex and mab-3 related transcription factor 2b [Source:ZFIN;Acc:ZDB-GENE-080813-1]) HSP 1 Score: 71.633 bits (174), Expect = 8.184e-15 Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 + RTPKCARCRNHG VS LKGHKR+CRW+DC CA C L+ E Sbjct: 46 RRMARTPKCARCRNHG-VSCLKGHKRFCRWRDCQCANCLLVVE 87
BLAST of Dmd-2 splice form 1 vs. Ensembl Nematostella
Match: EDO45848 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RRL3]) HSP 1 Score: 79.7221 bits (195), Expect = 4.792e-19 Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 1 Query: 148 QRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 QRTPKCARCRNHG S LKGHK YCRW+DC+C KC LIAE Sbjct: 9 QRTPKCARCRNHGVCSSLKGHKYYCRWRDCLCTKCLLIAE 48
BLAST of Dmd-2 splice form 1 vs. Ensembl Nematostella
Match: EDO41281 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S4Z8]) HSP 1 Score: 78.5666 bits (192), Expect = 1.021e-18 Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1 Query: 157 PKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 PKCARCRNHG VS LKGHKRYCRW+DC CA+C LIAE Sbjct: 2 PKCARCRNHGVVSWLKGHKRYCRWRDCNCAQCTLIAE 38
BLAST of Dmd-2 splice form 1 vs. Ensembl Nematostella
Match: EDO30270 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T198]) HSP 1 Score: 77.411 bits (189), Expect = 4.393e-18 Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 E R+P+CARCRNHG VS LKGHKRYC+WKDC C KC+LI E Sbjct: 9 ENLIRSPRCARCRNHGIVSYLKGHKRYCQWKDCTCTKCSLIIE 51
BLAST of Dmd-2 splice form 1 vs. Ensembl Nematostella
Match: EDO37386 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SFT8]) HSP 1 Score: 76.6406 bits (187), Expect = 4.848e-18 Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 Query: 151 RTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 R PKCARCRNHG +S LKGHK YCRW+DC C+KC LIAE Sbjct: 1 RIPKCARCRNHGALSWLKGHKHYCRWRDCTCSKCLLIAE 39
BLAST of Dmd-2 splice form 1 vs. Ensembl Nematostella
Match: EDO35744 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SKL0]) HSP 1 Score: 74.7146 bits (182), Expect = 2.900e-17 Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 Query: 151 RTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 R PKCARCR+HG VS LKGHK YCRW+DC C+KC LI E Sbjct: 1 RVPKCARCRSHGTVSWLKGHKHYCRWRDCTCSKCQLITE 39
BLAST of Dmd-2 splice form 1 vs. Ensembl Medaka
Match: dmrta2 (DMRT like family A2 [Source:NCBI gene;Acc:111947399]) HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-20 Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 +KY RTPKCARCRNHG VS LKGHKRYCRWKDC+CAKC LIAE Sbjct: 49 DKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAE 91
BLAST of Dmd-2 splice form 1 vs. Ensembl Medaka
Match: dmrta2 (DMRT like family A2 [Source:NCBI gene;Acc:111947399]) HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-20 Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 +KY RTPKCARCRNHG VS LKGHKRYCRWKDC+CAKC LIAE Sbjct: 49 DKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAE 91
BLAST of Dmd-2 splice form 1 vs. Ensembl Medaka
Match: DMRTA1 (DMRT like family A1 [Source:NCBI gene;Acc:101165100]) HSP 1 Score: 90.1225 bits (222), Expect = 1.667e-19 Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 1 Query: 106 LQPRQMFCRN----FEK-YQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 L+P +F R E+ Y RTPKCARCRNHG VS LKGHKR+CRW+DCVCAKC LIAE Sbjct: 28 LRPPSLFLRACNPALERGYPRTPKCARCRNHGVVSALKGHKRFCRWRDCVCAKCTLIAE 86
BLAST of Dmd-2 splice form 1 vs. Ensembl Medaka
Match: dmy (Oryzias latipes doublesex- and mab-3-related transcription factor 1 (dmy), mRNA. [Source:RefSeq mRNA;Acc:NM_001104680]) HSP 1 Score: 82.8037 bits (203), Expect = 1.031e-18 Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 ++ R PKC+RCRNHG+VSPLKGHKR+CRWKDC CAKC LIAE Sbjct: 19 QRSPRMPKCSRCRNHGFVSPLKGHKRFCRWKDCRCAKCKLIAE 61
BLAST of Dmd-2 splice form 1 vs. Ensembl Medaka
Match: dmy (Oryzias latipes doublesex- and mab-3-related transcription factor 1 (dmy), mRNA. [Source:RefSeq mRNA;Acc:NM_001104680]) HSP 1 Score: 85.1149 bits (209), Expect = 2.469e-18 Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 1 Query: 139 EKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 ++ R PKC+RCRNHG+VSPLKGHKR+CRWKDC CAKC LIAE Sbjct: 19 QRSPRMPKCSRCRNHGFVSPLKGHKRFCRWKDCRCAKCKLIAE 61
BLAST of Dmd-2 splice form 1 vs. Planmine SMEST
Match: SMESG000075920.1 (SMESG000075920.1) HSP 1 Score: 648.277 bits (1671), Expect = 0.000e+0 Identity = 337/341 (98.83%), Postives = 339/341 (99.41%), Query Frame = 1 Query: 4 LENSNSFNNTKINLSSVESIIDNEPKDFKSNLKCLQPRQMFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAEXXXXXXXXXXXXXXXXXXXXXINDFVMYQNEEIVYPSDSKKNISDFQDEKTEPKPLTEQCGNSSTLHPQISESEIVAKSQCIWNSINFPITKKLLNVSSHMTSEKKFSVSNLLHSSPMISTYDPILYLKKSFPHISNQILQLVLEISHGNLWLATNLLIRQFFNFERLILPRLQSDFMKTSFLNQIGPTNIRSLITPNDFMEPNSLCEEKSNCQELYDQYGIFSNGNFSQSFGPKLNPYNKLETNTNHEFKCD 1026 +ENSNSFNNTKINLSSVESIIDNEPKDFKSNLKCLQPRQMFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAERQRVMAAQVALRRQQAQEEQEINDFVMYQNEEIVYP DSKKNISDFQDEKTEPKPLTEQCGNSSTLHPQISESEIVAKSQCIWNSINFPITKKLLNVSSHMTSEKKFSVSNLLHSSPMISTYDPILYLKKSFPHISNQILQLVLEISHGNLWLATNLLIRQFFNFERLILPRLQSDFMKTSFLNQIGPTNIRSLITPNDFME NSLCEEKSNCQELYDQYGIFSNGNFSQ+FGPKLNPYNKLETNTNHEFKCD Sbjct: 1 MENSNSFNNTKINLSSVESIIDNEPKDFKSNLKCLQPRQMFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAERQRVMAAQVALRRQQAQEEQEINDFVMYQNEEIVYPPDSKKNISDFQDEKTEPKPLTEQCGNSSTLHPQISESEIVAKSQCIWNSINFPITKKLLNVSSHMTSEKKFSVSNLLHSSPMISTYDPILYLKKSFPHISNQILQLVLEISHGNLWLATNLLIRQFFNFERLILPRLQSDFMKTSFLNQIGPTNIRSLITPNDFMEQNSLCEEKSNCQELYDQYGIFSNGNFSQNFGPKLNPYNKLETNTNHEFKCD 341
BLAST of Dmd-2 splice form 1 vs. Planmine SMEST
Match: SMESG000006521.1 (SMESG000006521.1) HSP 1 Score: 79.7221 bits (195), Expect = 5.110e-16 Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 1 Query: 55 ESIIDNEPKDFKSNLKCLQPRQMFCRNFEKYQRTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAE 267 +S+ D P+ ++ LK +QP EK R PKCARCRNHG VS LKGHKR+C +KDC CAKC LIAE Sbjct: 10 KSLSDQTPEFSRNFLKLMQPPLYPIT--EKGARKPKCARCRNHGMVSWLKGHKRHCHYKDCRCAKCNLIAE 78 The following BLAST results are available for this feature:
BLAST of Dmd-2 splice form 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Dmd-2 splice form 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Dmd-2 splice form 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of Dmd-2 splice form 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Dmd-2 splice form 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Dmd-2 splice form 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Dmd-2 splice form 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Dmd-2 splice form 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Dmd-2 splice form 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Dmd-2 splice form 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of Dmd-2 splice form 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Dmd-2 splice form 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of Dmd-2 splice form 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Dmd-2 splice form 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Cross References
External references for this transcript
Sequences
The following sequences are available for this feature:
transcript sequence >SMED30000372 ID=SMED30000372|Name=Dmd-2 splice form 1|organism=Schmidtea mediterranea sexual|type=transcript|length=1145bpback to top protein sequence of SMED30000372-orf-1 >SMED30000372-orf-1 ID=SMED30000372-orf-1|Name=SMED30000372-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=343bp DLENSNSFNNTKINLSSVESIIDNEPKDFKSNLKCLQPRQMFCRNFEKYQback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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