SMED30000289

Overview
NameSMED30000289
Smed IDSMED30000289
Length (bp)1935
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30000289 (SMED30000289) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30000289 (SMED30000289) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30000289 (SMED30000289) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30000289 (SMED30000289) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30000289

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 12

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30000289SMESG000076644.1 SMESG000076643.1 dd_Smed_v4_227_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30000289SMESG000076644.1 SMESG000076643.1 dd_Smed_v4_227_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30000289SMESG000076644.1 SMESG000076643.1 dd_Smed_v4_227_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30000289SMESG000076644.1 SMESG000076643.1 dd_Smed_v4_227_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30000289SMESG000076644.1 SMESG000076643.1 dd_Smed_v4_227_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30000289SMESG000076644.1 SMESG000076643.1 dd_Smed_v4_227_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30000289SMESG000076644.1 SMESG000076643.1 dd_Smed_v4_227_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30000289SMESG000076644.1 SMESG000076643.1 dd_Smed_v4_227_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30000289SMESG000076644.1 SMESG000076643.1 dd_Smed_v4_227_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30000289SMESG000076644.1 SMESG000076643.1 dd_Smed_v4_227_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gamma neoblastSMED30000289SMESG000076644.1 SMESG000076643.1 dd_Smed_v6_227_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30000289SMESG000076644.1 SMESG000076643.1 dd_Smed_v6_227_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30000289 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.003243:31104..45756 -9276
Homology
[Close]
BLAST of SMED30000289 vs. Ensembl Human
Match: C1orf87 (chromosome 1 open reading frame 87 [Source:HGNC Symbol;Acc:HGNC:28547])

HSP 1 Score: 51.2174 bits (121), Expect = 4.916e-6
Identity = 47/215 (21.86%), Postives = 96/215 (44.65%), Query Frame = 3 
Query:  570 LRDLYMSLTNADPDLTGCISYNDLLFTLQRKQIPITEQLIQLIAAQFVSRKESMKVNYEKILSFLGAALRLNKSD-SNEDHFASQTSRSQKHGPHEHERQRSPGRGVYYHDSTCRNEEENMNFYTEKDDPAILRLLENSVRHQFTPINLESLRLAFQRSDRLLRSTLSEQQIKKLCYQHDVRIEDSVIERVIHRCKQRGGGQYDWQQFIRYLERV 1211
            L  L   L   DP  +G +  + L     + ++P+    ++++  +F  R     VNYEK+L FL +A     SD   ++  A+   +++ HG H    Q +P +         R               ++L +L+ ++R     +N+++L L+F++ DR     L   +++ +C +H + +  S++E +++        +  WQ F+  L R 
Sbjct:  195 LEKLQKELKILDPISSGFLLQSQLSRLFLKHEVPLQLPTVKILCQRFSKRGSPEMVNYEKLLWFLNSA----ASDYPQQNKAAADLRKTESHGTHS---QSTPPQHSSSQPEVNR---------------SLLEILKMALRTTNGRLNIDNLNLSFRKEDRSFSGCLPLPKVRAICGKHGLYLTLSLLETLLNHQDLGYQNEIKWQNFVEMLTRA 387
[Close]
BLAST of SMED30000289 vs. Ensembl Mouse
Match: Gm12695 (predicted gene 12695 [Source:MGI Symbol;Acc:MGI:3650206])

HSP 1 Score: 58.9214 bits (141), Expect = 1.439e-8
Identity = 45/218 (20.64%), Postives = 101/218 (46.33%), Query Frame = 3 
Query:  561 ATNLRD-LYMSLTNADPDLTGCISYNDLLFTLQRKQIPITEQLIQLIAAQFVSRKESMKVNYEKILSFLGAALRLNKSDSNEDHFASQTSRSQKHGPHEHERQRSPGRGVYYHDSTCRNEEENMNFYTEKDDPAILRLLENSVRHQFTPINLESLRLAFQRSDRLLRSTLSEQQIKKLCYQHDVRIEDSVIERVIHRCKQRGGGQYDWQQFIRYLERV 1211
            ++NL D L   L   DP  +G +  + L     R ++P+    ++L+  +F  R     VNY ++L FL  A    K +  ++  A  ++  +   P  H++   P       DS+  +E           + ++L +L+ ++R     ++++ L ++F++ D      L   ++  +C +H + +  +++E ++H  +    G+  W+ F+++L R 
Sbjct:  191 SSNLLDKLQKELKTLDPISSGFLHQSQLSCLFLRHKVPLPLLTVKLLCQRFSRRCSPEMVNYGEVLCFLKEA---TKDNLQQNGTAGYSNSRKTSSPSYHKQSIPP------QDSSLLSEV----------NKSLLEILKMALRPCQGKLSIDCLNMSFRKEDHSFSGCLPLPKVISICSKHGLYVTMTLLETLLHHQELGYRGEIKWKNFVKWLNRA 389
[Close]
BLAST of SMED30000289 vs. UniProt/SwissProt
Match: sp|A2AGB2|CA087_MOUSE (Uncharacterized protein C1orf87 homolog OS=Mus musculus OX=10090 GN=Gm12695 PE=4 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.006e-7
Identity = 45/218 (20.64%), Postives = 101/218 (46.33%), Query Frame = 3 
Query:  561 ATNLRD-LYMSLTNADPDLTGCISYNDLLFTLQRKQIPITEQLIQLIAAQFVSRKESMKVNYEKILSFLGAALRLNKSDSNEDHFASQTSRSQKHGPHEHERQRSPGRGVYYHDSTCRNEEENMNFYTEKDDPAILRLLENSVRHQFTPINLESLRLAFQRSDRLLRSTLSEQQIKKLCYQHDVRIEDSVIERVIHRCKQRGGGQYDWQQFIRYLERV 1211
            ++NL D L   L   DP  +G +  + L     R ++P+    ++L+  +F  R     VNY ++L FL  A    K +  ++  A  ++  +   P  H++   P       DS+  +E           + ++L +L+ ++R     ++++ L ++F++ D      L   ++  +C +H + +  +++E ++H  +    G+  W+ F+++L R 
Sbjct:  191 SSNLLDKLQKELKTLDPISSGFLHQSQLSCLFLRHKVPLPLLTVKLLCQRFSRRCSPEMVNYGEVLCFLKEA---TKDNLQQNGTAGYSNSRKTSSPSYHKQSIPP------QDSSLLSEV----------NKSLLEILKMALRPCQGKLSIDCLNMSFRKEDHSFSGCLPLPKVISICSKHGLYVTMTLLETLLHHQELGYRGEIKWKNFVKWLNRA 389
[Close]
BLAST of SMED30000289 vs. TrEMBL
Match: A0A267H5X3 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig000861g3 PE=4 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.293e-60
Identity = 143/433 (33.03%), Postives = 221/433 (51.04%), Query Frame = 3 
Query:  177 YSRNRFFQLPKYDANLSSRFGDVPAYMEKESTQSQSG------HYSHSTFNPHVVLPPIRYRRFGHNINQDSNLPFKLRRAHNAINSMSHHTILDNLLSTMPDF-NRLPDIPINITPDQENAILLETNYQLANFDATNLRDLYMSLTNADPDLTGCISYNDLLFTLQRKQIPITEQLIQLIAAQFVSRKESMKVNYEKILSFLGAALRLNKSDSNEDHFASQTSRSQKHGP------HEHER---------QRSPGRG----VYYHD----------STCRNEEENMN----------------FYTEKDDPAILRLLENSVRHQFTPINLESLRLAFQRSDRLLRSTLSEQQIKKLCYQHDVRIEDSVIERVIHRCKQRGGGQYDWQQFIRYLERVQPVQTGLDIRASRMPNDYIKYVPHPSSSWPQAETTS 1319
            + R RFF  P  +  LSSRFG  P  MEKES  + +            + +P+  LPPI           +S +  + +   N   + +    L NL + +P +  +L   P+++T + E  ++ E   QL   D T L+ +YM L N D DL+G   ++DL+  L +  I +   L +L+A+ F+S  E  +VNYE++LSF+GA L+   +D+N     S    S +H        +E +R         Q + G G    VYYH            T R    ++                   T++D P ILR LE  +     P+N E+LRLAFQR+DRLLR TLS +Q+K+L +   + + + V++ VI  C+ RGGGQYDW+QF+++LER+ P  TGL I +S+ P ++ ++ P P+ SWP AET++
Sbjct:   26 FRRGRFFNFPVQNLFLSSRFGIAPLSMEKESQSNPAADSPRRQQTDRLSLDPYSPLPPI---------GNESRVSTRQQTPANQ-QAAAMSAALSNLYNLLPGYHGKLTSAPLHLTREDEYIVMREVLKQLRYLDPTKLKQVYMELANYDDDLSGLCIFDDLIKALAKNNIMLPNPLSRLVASMFISAAEPHRVNYERVLSFIGACLKTAGTDNNFQLVNSSQYESPRHRTSYQQSFNEPQRLSTSIAERMQATAGPGSHSPVYYHQEADLPAPPTQGTQRAPMADIGSSGGAGGGGGGGGSGGVLTDRDLPRILRQLEAELATIDRPVNFETLRLAFQRADRLLRGTLSREQLKQLVWDFRIPMREHVLDNVISLCRHRGGGQYDWEQFLQFLERMTPQNTGLRIPSSKKPIEFARHYPQPAPSWPHAETSA 448

HSP 2 Score: 65.4698 bits (158), Expect = 2.498e-7
Identity = 27/68 (39.71%), Postives = 46/68 (67.65%), Query Frame = 3 
Query: 1680 PWFDRFMEMADSIYKSDFNSSGALPESKIVDITEKYNAMLNLKLKREDISSALRASKRSHGSIDINNF 1883
            PWF+RFM++AD++Y+ D +S G L E ++  + ++YN    L L +  + +AL A++ S G +DIN+F
Sbjct:  528 PWFNRFMKLADALYRHDNDSRGFLAEDQVRKLVDRYNRDYQLALDQTSVQAALNATRGSSGRVDINSF 595
[Close]
BLAST of SMED30000289 vs. TrEMBL
Match: A0A267EIM1 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig000861g1 PE=4 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.002e-53
Identity = 119/340 (35.00%), Postives = 184/340 (54.12%), Query Frame = 3 
Query:  438 LDNLLSTMPDF-NRLPDIPINITPDQENAILLETNYQLANFDATNLRDLYMSLTNADPDLTGCISYNDLLFTLQRKQIPITEQLIQLIAAQFVSRKESMKVNYEKILSFLGAALRLNKSDSNEDHFASQTSRSQKHGP------HEHER---------QRSPGRG----VYYHD----------STCRNEEENMN----------------FYTEKDDPAILRLLENSVRHQFTPINLESLRLAFQRSDRLLRSTLSEQQIKKLCYQHDVRIEDSVIERVIHRCKQRGGGQYDWQQFIRYLERVQPVQTGLDIRASRMPNDYIKYVPHPSSSWPQAETTS 1319
            L NL + +P +  +L   P+++T + E  ++ E   QL   D T L+ +YM L N D DL+G   ++DL+  L +  I +   L +L+A+ F+S  E  +VNYE++LSF+GA L+   +D+N     S    S +H        +E +R         Q + G G    VYYH            T R    ++                   T++D P ILR LE  +     P+N E+LRLAFQR+DRLLR TLS +Q+K+L +   + + + V++ VI  C+ RGGGQYDW+QF+++LER+ P  TGL I +S+ P ++ ++ P P+ SWP AET++
Sbjct:    5 LSNLYNLLPGYHGKLTSAPLHLTREDEYIVMREVLKQLRYLDPTKLKQVYMELANYDDDLSGLCIFDDLIKALAKNNIMLPNPLSRLVASMFISAAEPHRVNYERVLSFIGACLKTAGTDNNFQLVNSSQYESPRHRTSYQQSFNEPQRLSTSIAERMQATAGPGSHSPVYYHQEADLPAPPTQGTQRAPMADIGSSGGAGGGGGGGGSGGVLTDRDLPRILRQLEAELATIDRPVNFETLRLAFQRADRLLRGTLSREQLKQLVWDFRIPMREHVLDNVISLCRHRGGGQYDWEQFLQFLERMTPQNTGLRIPSSKKPIEFARHYPQPAPSWPHAETSA 344

HSP 2 Score: 65.4698 bits (158), Expect = 2.204e-7
Identity = 27/68 (39.71%), Postives = 46/68 (67.65%), Query Frame = 3 
Query: 1680 PWFDRFMEMADSIYKSDFNSSGALPESKIVDITEKYNAMLNLKLKREDISSALRASKRSHGSIDINNF 1883
            PWF+RFM++AD++Y+ D +S G L E ++  + ++YN    L L +  + +AL A++ S G +DIN+F
Sbjct:  424 PWFNRFMKLADALYRHDNDSRGFLAEDQVRKLVDRYNRDYQLALDQTSVQAALNATRGSSGRVDINSF 491
[Close]
BLAST of SMED30000289 vs. TrEMBL
Match: A0A1I8HJF0 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.335e-52
Identity = 119/340 (35.00%), Postives = 184/340 (54.12%), Query Frame = 3 
Query:  438 LDNLLSTMPDF-NRLPDIPINITPDQENAILLETNYQLANFDATNLRDLYMSLTNADPDLTGCISYNDLLFTLQRKQIPITEQLIQLIAAQFVSRKESMKVNYEKILSFLGAALRLNKSDSNEDHFASQTSRSQKHGP------HEHER---------QRSPGRG----VYYHD----------STCRNEEENMN----------------FYTEKDDPAILRLLENSVRHQFTPINLESLRLAFQRSDRLLRSTLSEQQIKKLCYQHDVRIEDSVIERVIHRCKQRGGGQYDWQQFIRYLERVQPVQTGLDIRASRMPNDYIKYVPHPSSSWPQAETTS 1319
            L NL + +P +  +L   P+++T + E  ++ E   QL   D T L+ +YM L N D DL+G   ++DL+  L +  I +   L +L+A+ F+S  E  +VNYE++LSF+GA L+   +D+N     S    S +H        +E +R         Q + G G    VYYH            T R    ++                   T++D P ILR LE  +     P+N E+LRLAFQR+DRLLR TLS +Q+K+L +   + + + V++ VI  C+ RGGGQYDW+QF+++LER+ P  TGL I +S+ P ++ ++ P P+ SWP AET++
Sbjct:  176 LSNLYNLLPGYHGKLTSAPLHLTREDEYIVMREVLKQLRYLDPTKLKQVYMELANYDDDLSGLCIFDDLIKALAKNNIMLPNPLSRLVASMFISAAEPHRVNYERVLSFIGACLKTAGTDNNFQLVNSSQYESPRHRTSYQQSFNEPQRLSTSIAERMQATAGPGSHSPVYYHQEADLPAPPTQGTQRAPMADIGSSGGAGGGGGGGGSGGVLTDRDLPRILRQLEAELATIDRPVNFETLRLAFQRADRLLRGTLSREQLKQLVWDFRIPMREHVLDNVISLCRHRGGGQYDWEQFLQFLERMTPQNTGLRIPSSKKPIEFARHYPQPAPSWPHAETSA 515

HSP 2 Score: 65.4698 bits (158), Expect = 2.977e-7
Identity = 27/68 (39.71%), Postives = 46/68 (67.65%), Query Frame = 3 
Query: 1680 PWFDRFMEMADSIYKSDFNSSGALPESKIVDITEKYNAMLNLKLKREDISSALRASKRSHGSIDINNF 1883
            PWF+RFM++AD++Y+ D +S G L E ++  + ++YN    L L +  + +AL A++ S G +DIN+F
Sbjct:  595 PWFNRFMKLADALYRHDNDSRGFLAEDQVRKLVDRYNRDYQLALDQTSVQAALNATRGSSGRVDINSF 662
[Close]
BLAST of SMED30000289 vs. TrEMBL
Match: A0A1I8HXV6 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.392e-52
Identity = 119/340 (35.00%), Postives = 184/340 (54.12%), Query Frame = 3 
Query:  438 LDNLLSTMPDF-NRLPDIPINITPDQENAILLETNYQLANFDATNLRDLYMSLTNADPDLTGCISYNDLLFTLQRKQIPITEQLIQLIAAQFVSRKESMKVNYEKILSFLGAALRLNKSDSNEDHFASQTSRSQKHGP------HEHER---------QRSPGRG----VYYHD----------STCRNEEENMN----------------FYTEKDDPAILRLLENSVRHQFTPINLESLRLAFQRSDRLLRSTLSEQQIKKLCYQHDVRIEDSVIERVIHRCKQRGGGQYDWQQFIRYLERVQPVQTGLDIRASRMPNDYIKYVPHPSSSWPQAETTS 1319
            L NL + +P +  +L   P+++T + E  ++ E   QL   D T L+ +YM L N D DL+G   ++DL+  L +  I +   L +L+A+ F+S  E  +VNYE++LSF+GA L+   +D+N     S    S +H        +E +R         Q + G G    VYYH            T R    ++                   T++D P ILR LE  +     P+N E+LRLAFQR+DRLLR TLS +Q+K+L +   + + + V++ VI  C+ RGGGQYDW+QF+++LER+ P  TGL I +S+ P ++ ++ P P+ SWP AET++
Sbjct:  178 LSNLYNLLPGYHGKLTSAPLHLTREDEYIVMREVLKQLRYLDPTKLKQVYMELANYDDDLSGLCIFDDLIKALAKNNIMLPNPLSRLVASMFISAAEPHRVNYERVLSFIGACLKTAGTDNNFQLVNSSQYESPRHRTSYQQSFNEPQRLSTSIAERMQATAGPGSHSPVYYHQEADLPAPPTQGTQRAPMADIGSSGGAGGGGGGGGSGGVLTDRDLPRILRQLEAELATIDRPVNFETLRLAFQRADRLLRGTLSREQLKQLVWDFRIPMREHVLDNVISLCRHRGGGQYDWEQFLQFLERMTPQNTGLRIPSSKKPIEFARHYPQPAPSWPHAETSA 517

HSP 2 Score: 65.4698 bits (158), Expect = 3.035e-7
Identity = 27/68 (39.71%), Postives = 46/68 (67.65%), Query Frame = 3 
Query: 1680 PWFDRFMEMADSIYKSDFNSSGALPESKIVDITEKYNAMLNLKLKREDISSALRASKRSHGSIDINNF 1883
            PWF+RFM++AD++Y+ D +S G L E ++  + ++YN    L L +  + +AL A++ S G +DIN+F
Sbjct:  597 PWFNRFMKLADALYRHDNDSRGFLAEDQVRKLVDRYNRDYQLALDQTSVQAALNATRGSSGRVDINSF 664
[Close]
BLAST of SMED30000289 vs. TrEMBL
Match: A0A433TLP7 (Uncharacterized protein OS=Elysia chlorotica OX=188477 GN=EGW08_009819 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 3.065e-47
Identity = 145/502 (28.88%), Postives = 222/502 (44.22%), Query Frame = 3 
Query:  408 AINSMSHHTILDNLLSTMPDFNRLPDIPINITPDQENAILLETNYQLANFDATNLRDLYMSLTN-ADPDLTGCISYNDLLFTLQRKQIPITEQLIQLIAAQFVSRKESMK-VNYEKILSFLGAALR-------LNKSDSNEDHFASQTSRSQKHGPHEHERQRSPGRGVYYHDSTCRNEEENMNFYTEKDDPAILRLLENSVRHQFTPINLESLRLAFQRSDRLLRSTLSEQQIKKLCYQHDVRIEDSVIERVIHRCKQRG-GGQYDWQQFIRYLERVQPVQTGLDIRASRMPNDYIKYVPHPSSSWPQAETTSLWGSPLQNHDSQVWNDSSRAVTQLPPPLASSRNHGVQTFQTNNENFDPLLMKLNQLQQEVNTMTAKTPMSEDRNSIQEDTFENTTDNSVFDKYXXXXXXXXXXXXXMSPEFHLKDNFQILPWFDRFMEMADSIYKSDFNSSGALPESKIVDITEKYNAMLNLKLKREDISSALRASKRSHGSIDINNF 1883
            A NS +       LL+ +P    LPD P+ +T   E  +L    ++L   D   LRD+Y+ +TN  D  L+G   Y DL  TL R        L+Q++AA FVS   + + VNYEK LSF+G AL+        N S++   ++ S  S  +KH P  H R  SP                   F+ +  +  + R++E  +      I+ E L  +FQ+ DR +R TLS  QIK +C+QH + I++S+I  ++ RC+      QY W  F+R LERVQP +TGL I  S+ P +Y K  P P+ SWP+   T           +  W        ++ PP++  R    +    N E    +  +L  L++    + +K+P    R   +   F+N                                          FM  AD++Y+ D    G+LP S + + T  YN    L++    ISSAL  S +  G +DI+ +
Sbjct:  184 AANSGTDEQFKSRLLAQIPRGVFLPDSPLVLTERDEMRLLSILAWELRPADPVKLRDVYLDITNTVDKQLSGYCGYQDLFHTLSRMNFKFPADLLQIVAALFVSDHRNQRDVNYEKFLSFVGVALKNKSTIKPSNSSNTGNQYYTS-NSNQRKHSPIRH-RPGSP-------------------FFNDGGEAKLFRMIEEQLNENEYFIDFERLINSFQQEDRDVRGTLSADQIKSICFQHRIPIQESLIANMLQRCEDSNRDEQYKWFDFVRLLERVQPAKTGLTIPTSKRPLEYAKVQPAPAPSWPKGSNTY----------TPSW--------KMDPPVSPRRE---EVPDPNREIISRMDQELRDLEKNYEELKSKSP----RRKEEAPWFKN------------------------------------------FMAFADALYRQDERYEGSLPYSDVAEWTRMYNDSFQLEIPENVISSALNQSTK-KGKVDIHKY 596
[Close]
BLAST of SMED30000289 vs. Ensembl Nematostella
Match: EDO48214 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKA7])

HSP 1 Score: 80.1073 bits (196), Expect = 9.957e-16
Identity = 71/291 (24.40%), Postives = 129/291 (44.33%), Query Frame = 3 
Query:  513 ENAILLETNYQLANFDATNLRDLYMSLTNADPDLTGCISYNDLLFTLQRKQIPITEQLIQLIAAQFVSRKESMKVNYEKILSFLGAALRLNKSD-----------SNEDHFA--SQTSRSQKHGPHEHERQRSPGRGVYYHDSTCRNE-EENMNFYTEKDDPAILRLLENSVRHQF-TPINLESLRLAFQRSDRLLRSTLSEQQIKKLCYQHDVRIEDSVIERVIHRCKQRGGGQYDWQQFIRYLERVQPVQTGLDIRASRMPNDYIKYVPHPSSSWPQAETTSLWGSPLQ 1340
            + A++ +  + L  FD + L++ YMS    D  LTG ++   +    QR  IPI    ++ + ++F+S +    +NYE++L F+    +   S+            + DHF+  S    +    P+    Q SP R V    ST R         + ++ D  +L  +E  ++  +     ++SL    +  +      +S Q++K +C +H +    S++E++I R   R  G+  W +F+ ++ER  P+Q+    RA R            SS  P A+ T     PLQ
Sbjct:  132 DEALMKDLRFILQQFDTSRLKEAYMSFAGLDSTLTGFVNSEQVQQVFQRYSIPIQGHQLESVMSKFMSGRRPNWINYEQMLKFINNCTKPAGSNIISYEIPKLDFESRDHFSQNSPLDATLTMKPN----QVSP-RPVNDGSSTGRQSVVATKRAFQDRQDAHLLIEMERMLKQVYHVQDQIDSLYQTLRDHEMTNTEIISSQKLKTICLRHHLPFNGSLLEKIIDRLDPRDTGRLSWVEFMDFVERAIPLQSAGSSRAGRH---------EASSDLPPAQPTWETRQPLQ 408
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BLAST of SMED30000289 vs. Planmine SMEST
Match: SMESG000076643.1 (SMESG000076643.1)

HSP 1 Score: 1148.27 bits (2969), Expect = 0.000e+0
Identity = 566/573 (98.78%), Postives = 569/573 (99.30%), Query Frame = 3 
Query:  165 MAGTYSRNRFFQLPKYDANLSSRFGDVPAYMEKESTQSQSGHYSHSTFNPHVVLPPIRYRRFGHNINQDSNLPFKLRRAHNAINSMSHHTILDNLLSTMPDFNRLPDIPINITPDQENAILLETNYQLANFDATNLRDLYMSLTNADPDLTGCISYNDLLFTLQRKQIPITEQLIQLIAAQFVSRKESMKVNYEKILSFLGAALRLNKSDSNEDHFASQTSRSQKHGPHEHERQRSPGRGVYYHDSTCRNEEENMNFYTEKDDPAILRLLENSVRHQFTPINLESLRLAFQRSDRLLRSTLSEQQIKKLCYQHDVRIEDSVIERVIHRCKQRGGGQYDWQQFIRYLERVQPVQTGLDIRASRMPNDYIKYVPHPSSSWPQAETTSLWGSPLQNHDSQVWNDSSRAVTQLPPPLASSRNHGVQTFQTNNENFDPLLMKLNQLQQEVNTMTAKTPMSEDRNSIQEDTFENTTDNSVFDKYXXXXXXXXXXXXXMSPEFHLKDNFQILPWFDRFMEMADSIYKSDFNSSGALPESKIVDITEKYNAMLNLKLKREDISSALRASKRSHGSIDINNF 1883
            MAGTYSRNRFFQLPKYDANLSSRFGDVPAYMEKE TQSQSGHYSHSTFNPHVVLPPIRYRRFGHNINQDSNLPFKLRRAHNAINSMSHHTILDNLLSTMPDFNRLPDIPINITPDQENAILLETNYQLANFDATNLRDLYMSLTNADPDLTGCISYNDLLFTLQRKQIPITEQLIQLIAAQFVSRKESMKVNYEKILSFLGAALRLNKSDSNEDHFASQTSRSQKHGPHE ERQRSPGRGVYYHDSTCRNEEENMNFYTEKDDPAILRLLENSVRHQFTPINLESLRLAFQRSDRLLRSTLSEQQIK+LCYQHDVRIEDSVIERVIHRCKQRGGGQYDWQQFIRYLERVQPVQTGLDIRASRMPNDYIKYVPHPSSSWPQAETTSLWGSPLQNHDSQVWNDSSRAVTQLPPPLASSRNHGVQTFQTNNENFDPLLMKLNQLQQE+NTMTAKTPMSEDRNSIQ DTFENTTDNSVFDKYNERNNTNEFETR+MSPEF LKDNFQILPWFDRFMEMADSIYKSDFNSSGALPESKIVDITEKYNAMLNLKLKREDISSALRASKRSHGSIDINNF
Sbjct:    1 MAGTYSRNRFFQLPKYDANLSSRFGDVPAYMEKEPTQSQSGHYSHSTFNPHVVLPPIRYRRFGHNINQDSNLPFKLRRAHNAINSMSHHTILDNLLSTMPDFNRLPDIPINITPDQENAILLETNYQLANFDATNLRDLYMSLTNADPDLTGCISYNDLLFTLQRKQIPITEQLIQLIAAQFVSRKESMKVNYEKILSFLGAALRLNKSDSNEDHFASQTSRSQKHGPHEQERQRSPGRGVYYHDSTCRNEEENMNFYTEKDDPAILRLLENSVRHQFTPINLESLRLAFQRSDRLLRSTLSEQQIKELCYQHDVRIEDSVIERVIHRCKQRGGGQYDWQQFIRYLERVQPVQTGLDIRASRMPNDYIKYVPHPSSSWPQAETTSLWGSPLQNHDSQVWNDSSRAVTQLPPPLASSRNHGVQTFQTNNENFDPLLMKLNQLQQEINTMTAKTPMSEDRNSIQ-DTFENTTDNSVFDKYNERNNTNEFETRDMSPEFQLKDNFQILPWFDRFMEMADSIYKSDFNSSGALPESKIVDITEKYNAMLNLKLKREDISSALRASKRSHGSIDINNF 572
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BLAST of SMED30000289 vs. Planmine SMEST
Match: SMESG000036249.1 (SMESG000036249.1)

HSP 1 Score: 154.066 bits (388), Expect = 6.755e-40
Identity = 86/299 (28.76%), Postives = 162/299 (54.18%), Query Frame = 3 
Query:  438 LDNLLSTMPDFNRLPDIPINITPDQENAILLETNYQLANFD--ATNLRDLYMSLTNADPDLTGCISYNDLLFTLQRKQIPITEQLIQLIAAQFV--SRKESMKVNYEKILSFLGAALRLNKSDSNEDHFASQTSRSQKHGPHEHERQRSPGRGVYYHDSTC---RNEEENMNFYTEKDDPAILRLLENSVRHQFTPINLESLRLAFQRSDRLLRSTLSEQQIKKLCYQHDVRIEDSVIERVIHRCKQRGGGQYDWQQFIRYLERVQPVQTGLDIRASRMPNDYIKYVPHPSSSWPQAET 1313
            L  L++ +P    LP+  I++   ++ +++     ++ +      NL+ +Y+ +   D +LTG  S+ + +       + I+  L+++I++ F+  SR +   +NYEK +SFLGA     +++        + S ++   P     + +    +Y+HD  C   R+ E   +     D+  ++R + + V     PI  + +RL+ QR+D   R TLS +Q++ +C+  ++ ++ S  E ++ R K  GGGQ++WQ F+  LE+VQP+ TGL I  S+MP DY+K +P P+SSWP +E+
Sbjct:  103 LSELVALLPQGKDLPNKSISLRNYEQISLINIAKNEICDIPDFIANLKRIYLMIAKIDINLTGLCSFKEFVDACYHNNVHISFDLLRVISSLFIVSSRDDVQFLNYEKPISFLGAIFNSFQTE--------KMSPARNQSPLRESHRETVEHPLYFHDEDCTDLRSTERMRDSLIPIDETELIRKINDDVGFYIIPI--QRIRLSCQRNDSFHRGTLSAKQLEDICFSENLNLKKSTFENLLQRSKYMGGGQFNWQSFVDLLEKVQPINTGLQIPNSKMPLDYVKQIPTPASSWPHSES 391
[Close]
BLAST of SMED30000289 vs. Planmine SMEST
Match: SMESG000036249.1 (SMESG000036249.1)

HSP 1 Score: 154.066 bits (388), Expect = 7.061e-40
Identity = 86/299 (28.76%), Postives = 162/299 (54.18%), Query Frame = 3 
Query:  438 LDNLLSTMPDFNRLPDIPINITPDQENAILLETNYQLANFD--ATNLRDLYMSLTNADPDLTGCISYNDLLFTLQRKQIPITEQLIQLIAAQFV--SRKESMKVNYEKILSFLGAALRLNKSDSNEDHFASQTSRSQKHGPHEHERQRSPGRGVYYHDSTC---RNEEENMNFYTEKDDPAILRLLENSVRHQFTPINLESLRLAFQRSDRLLRSTLSEQQIKKLCYQHDVRIEDSVIERVIHRCKQRGGGQYDWQQFIRYLERVQPVQTGLDIRASRMPNDYIKYVPHPSSSWPQAET 1313
            L  L++ +P    LP+  I++   ++ +++     ++ +      NL+ +Y+ +   D +LTG  S+ + +       + I+  L+++I++ F+  SR +   +NYEK +SFLGA     +++        + S ++   P     + +    +Y+HD  C   R+ E   +     D+  ++R + + V     PI  + +RL+ QR+D   R TLS +Q++ +C+  ++ ++ S  E ++ R K  GGGQ++WQ F+  LE+VQP+ TGL I  S+MP DY+K +P P+SSWP +E+
Sbjct:  102 LSELVALLPQGKDLPNKSISLRNYEQISLINIAKNEICDIPDFIANLKRIYLMIAKIDINLTGLCSFKEFVDACYHNNVHISFDLLRVISSLFIVSSRDDVQFLNYEKPISFLGAIFNSFQTE--------KMSPARNQSPLRESHRETVEHPLYFHDEDCTDLRSTERMRDSLIPIDETELIRKINDDVGFYIIPI--QRIRLSCQRNDSFHRGTLSAKQLEDICFSENLNLKKSTFENLLQRSKYMGGGQFNWQSFVDLLEKVQPINTGLQIPNSKMPLDYVKQIPTPASSWPHSES 390
[Close]
BLAST of SMED30000289 vs. Planmine SMEST
Match: SMESG000036249.1 (SMESG000036249.1)

HSP 1 Score: 154.066 bits (388), Expect = 8.695e-40
Identity = 86/299 (28.76%), Postives = 162/299 (54.18%), Query Frame = 3 
Query:  438 LDNLLSTMPDFNRLPDIPINITPDQENAILLETNYQLANFD--ATNLRDLYMSLTNADPDLTGCISYNDLLFTLQRKQIPITEQLIQLIAAQFV--SRKESMKVNYEKILSFLGAALRLNKSDSNEDHFASQTSRSQKHGPHEHERQRSPGRGVYYHDSTC---RNEEENMNFYTEKDDPAILRLLENSVRHQFTPINLESLRLAFQRSDRLLRSTLSEQQIKKLCYQHDVRIEDSVIERVIHRCKQRGGGQYDWQQFIRYLERVQPVQTGLDIRASRMPNDYIKYVPHPSSSWPQAET 1313
            L  L++ +P    LP+  I++   ++ +++     ++ +      NL+ +Y+ +   D +LTG  S+ + +       + I+  L+++I++ F+  SR +   +NYEK +SFLGA     +++        + S ++   P     + +    +Y+HD  C   R+ E   +     D+  ++R + + V     PI  + +RL+ QR+D   R TLS +Q++ +C+  ++ ++ S  E ++ R K  GGGQ++WQ F+  LE+VQP+ TGL I  S+MP DY+K +P P+SSWP +E+
Sbjct:  112 LSELVALLPQGKDLPNKSISLRNYEQISLINIAKNEICDIPDFIANLKRIYLMIAKIDINLTGLCSFKEFVDACYHNNVHISFDLLRVISSLFIVSSRDDVQFLNYEKPISFLGAIFNSFQTE--------KMSPARNQSPLRESHRETVEHPLYFHDEDCTDLRSTERMRDSLIPIDETELIRKINDDVGFYIIPI--QRIRLSCQRNDSFHRGTLSAKQLEDICFSENLNLKKSTFENLLQRSKYMGGGQFNWQSFVDLLEKVQPINTGLQIPNSKMPLDYVKQIPTPASSWPHSES 400
[Close]
BLAST of SMED30000289 vs. Planmine SMEST
Match: SMESG000036249.1 (SMESG000036249.1)

HSP 1 Score: 154.066 bits (388), Expect = 8.750e-40
Identity = 86/299 (28.76%), Postives = 162/299 (54.18%), Query Frame = 3 
Query:  438 LDNLLSTMPDFNRLPDIPINITPDQENAILLETNYQLANFD--ATNLRDLYMSLTNADPDLTGCISYNDLLFTLQRKQIPITEQLIQLIAAQFV--SRKESMKVNYEKILSFLGAALRLNKSDSNEDHFASQTSRSQKHGPHEHERQRSPGRGVYYHDSTC---RNEEENMNFYTEKDDPAILRLLENSVRHQFTPINLESLRLAFQRSDRLLRSTLSEQQIKKLCYQHDVRIEDSVIERVIHRCKQRGGGQYDWQQFIRYLERVQPVQTGLDIRASRMPNDYIKYVPHPSSSWPQAET 1313
            L  L++ +P    LP+  I++   ++ +++     ++ +      NL+ +Y+ +   D +LTG  S+ + +       + I+  L+++I++ F+  SR +   +NYEK +SFLGA     +++        + S ++   P     + +    +Y+HD  C   R+ E   +     D+  ++R + + V     PI  + +RL+ QR+D   R TLS +Q++ +C+  ++ ++ S  E ++ R K  GGGQ++WQ F+  LE+VQP+ TGL I  S+MP DY+K +P P+SSWP +E+
Sbjct:  111 LSELVALLPQGKDLPNKSISLRNYEQISLINIAKNEICDIPDFIANLKRIYLMIAKIDINLTGLCSFKEFVDACYHNNVHISFDLLRVISSLFIVSSRDDVQFLNYEKPISFLGAIFNSFQTE--------KMSPARNQSPLRESHRETVEHPLYFHDEDCTDLRSTERMRDSLIPIDETELIRKINDDVGFYIIPI--QRIRLSCQRNDSFHRGTLSAKQLEDICFSENLNLKKSTFENLLQRSKYMGGGQFNWQSFVDLLEKVQPINTGLQIPNSKMPLDYVKQIPTPASSWPHSES 399
The following BLAST results are available for this feature:
BLAST of SMED30000289 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 1
Match NameE-valueIdentityDescription
C1orf874.916e-621.86chromosome 1 open reading frame 87 [Source:HGNC Sy... [more]
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BLAST of SMED30000289 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000289 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000289 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000289 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000289 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Gm126951.439e-820.64predicted gene 12695 [Source:MGI Symbol;Acc:MGI:36... [more]
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BLAST of SMED30000289 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 1
Match NameE-valueIdentityDescription
sp|A2AGB2|CA087_MOUSE1.006e-720.64Uncharacterized protein C1orf87 homolog OS=Mus mus... [more]
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BLAST of SMED30000289 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A267H5X31.293e-6033.03Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267EIM13.002e-5335.00Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8HJF06.335e-5235.00Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8HXV66.392e-5235.00Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A433TLP73.065e-4728.88Uncharacterized protein OS=Elysia chlorotica OX=18... [more]
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BLAST of SMED30000289 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000289 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000289 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000289 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO482149.957e-1624.40Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30000289 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30000289 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000076643.10.000e+098.78SMESG000076643.1[more]
SMESG000036249.16.755e-4028.76SMESG000036249.1[more]
SMESG000036249.17.061e-4028.76SMESG000036249.1[more]
SMESG000036249.18.695e-4028.76SMESG000036249.1[more]
SMESG000036249.18.750e-4028.76SMESG000036249.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30000289 ID=SMED30000289|Name=SMED30000289|organism=Schmidtea mediterranea sexual|type=transcript|length=1935bp
GTTAATTTCAGTAAATCAAATTTAGTTGGCATTTGAACAGCATTTCAAAC
CTTATTTGAACTTGATTTCAGCTCTCAGTTGCATTTCCAAGTGAATTGCC
ATAGTTACTATTTGGACTAGTTTTCACCAGGTAGATTATTGATTCACAAT
CGACAGATATTCTCATGGCGGGAACATATTCGAGAAATCGGTTTTTCCAA
TTACCAAAATATGATGCGAATTTGAGCAGTAGATTTGGAGATGTTCCTGC
TTATATGGAGAAAGAATCAACTCAGTCGCAATCGGGTCACTATTCTCATT
CGACTTTTAATCCGCATGTTGTGCTTCCTCCAATCAGATATCGAAGATTT
GGCCACAACATAAATCAAGATTCCAATTTACCCTTCAAGTTACGTCGAGC
TCACAATGCTATCAATTCGATGTCACATCACACTATTCTCGATAATTTGC
TCTCTACTATGCCAGATTTTAATCGTCTGCCCGACATTCCAATAAATATT
ACTCCTGATCAAGAAAATGCAATTTTATTAGAAACCAATTATCAGTTGGC
TAATTTTGATGCAACCAATCTCCGTGATCTTTATATGTCATTAACGAATG
CGGATCCAGACTTGACTGGCTGTATCAGTTATAATGACTTGCTATTTACA
CTTCAAAGGAAACAAATACCAATTACAGAACAACTAATTCAATTGATAGC
TGCTCAATTCGTGTCTAGGAAGGAGTCAATGAAAGTCAATTACGAAAAAA
TATTATCATTTCTCGGGGCGGCATTAAGGCTAAATAAATCTGATTCTAAT
GAGGATCATTTTGCTTCTCAAACCTCTAGGTCACAGAAACATGGACCACA
TGAGCATGAAAGGCAGCGAAGTCCTGGCCGAGGAGTTTATTATCATGATT
CGACCTGCCGGAATGAAGAGGAAAACATGAATTTTTATACAGAGAAGGAT
GATCCAGCTATTTTGAGACTATTGGAAAATTCAGTTCGACATCAATTTAC
ACCAATTAATCTGGAATCTTTAAGACTTGCATTTCAAAGATCTGACCGGT
TACTTCGTAGTACTTTATCTGAGCAACAAATCAAAAAACTTTGTTATCAG
CATGATGTAAGGATTGAAGACAGCGTGATAGAAAGAGTTATTCATCGATG
TAAGCAAAGAGGTGGTGGACAATATGATTGGCAGCAGTTCATTAGATACC
TTGAAAGAGTTCAGCCAGTACAAACAGGTTTAGATATACGGGCCAGTAGA
ATGCCAAATGATTATATAAAATACGTTCCACATCCATCCAGCAGCTGGCC
TCAAGCTGAGACTACATCGTTATGGGGAAGTCCATTACAAAATCATGACA
GTCAAGTATGGAATGATTCAAGTCGAGCTGTCACCCAATTACCTCCACCA
CTGGCAAGCAGTCGCAATCATGGAGTTCAAACTTTTCAAACGAATAATGA
AAACTTTGATCCTTTGCTGATGAAACTTAATCAACTACAACAAGAAGTTA
ATACCATGACCGCAAAGACACCAATGTCAGAGGATAGAAATTCAATCCAA
GAAGACACTTTTGAGAATACAACCGATAATAGTGTATTTGATAAATACAA
TGAAAGAAACAATACCAATGAATTTGAAACACGAGAGATGTCACCAGAAT
TTCATTTAAAAGATAATTTTCAAATTTTACCTTGGTTTGACAGATTCATG
GAAATGGCCGACAGTATTTACAAATCTGATTTCAATTCATCTGGTGCTTT
ACCAGAATCGAAAATCGTGGACATTACCGAAAAATACAACGCTATGTTAA
ACCTCAAACTCAAAAGAGAAGATATATCAAGCGCATTAAGAGCCAGTAAA
CGATCTCATGGATCAATCGACATTAATAACTTTTTAAAGCTATTAGCTGT
AAAGAAATAGAAATTAGTTGGAAATTATATCTTTA
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protein sequence of SMED30000289-orf-1

>SMED30000289-orf-1 ID=SMED30000289-orf-1|Name=SMED30000289-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=582bp
MAGTYSRNRFFQLPKYDANLSSRFGDVPAYMEKESTQSQSGHYSHSTFNP
HVVLPPIRYRRFGHNINQDSNLPFKLRRAHNAINSMSHHTILDNLLSTMP
DFNRLPDIPINITPDQENAILLETNYQLANFDATNLRDLYMSLTNADPDL
TGCISYNDLLFTLQRKQIPITEQLIQLIAAQFVSRKESMKVNYEKILSFL
GAALRLNKSDSNEDHFASQTSRSQKHGPHEHERQRSPGRGVYYHDSTCRN
EEENMNFYTEKDDPAILRLLENSVRHQFTPINLESLRLAFQRSDRLLRST
LSEQQIKKLCYQHDVRIEDSVIERVIHRCKQRGGGQYDWQQFIRYLERVQ
PVQTGLDIRASRMPNDYIKYVPHPSSSWPQAETTSLWGSPLQNHDSQVWN
DSSRAVTQLPPPLASSRNHGVQTFQTNNENFDPLLMKLNQLQQEVNTMTA
KTPMSEDRNSIQEDTFENTTDNSVFDKYNERNNTNEFETREMSPEFHLKD
NFQILPWFDRFMEMADSIYKSDFNSSGALPESKIVDITEKYNAMLNLKLK
REDISSALRASKRSHGSIDINNFLKLLAVKK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000039gamma neoblast
PLANA:0000429neoblast
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR040774DUF5580
IPR011992EF-hand-dom_pair
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..242
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 225..242
IPR040774Protein of unknown function DUF5580PANTHERPTHR34830FAMILY NOT NAMEDcoord: 87..576
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 137..347