RNA binding protein MEX3B
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30000222 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of RNA binding protein MEX3B vs. Ensembl Human
Match: MEX3A (mex-3 RNA binding family member A [Source:HGNC Symbol;Acc:HGNC:33482]) HSP 1 Score: 58.151 bits (139), Expect = 2.584e-8 Identity = 49/146 (33.56%), Postives = 69/146 (47.26%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834 V VPT EHV+EIVG+QG KIK +R KT I TP E+ VF++ T R I A ++ R N + FG ++R + VP +VG ++G G+ I IQ+ T T I +P +D +P Sbjct: 136 VPVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFMVTGRREDVATARREIISAAEHFSMIRASRNKSGAA--------FGVAPALPGQVTIR-------VRVPYRVVGLVVGPKGATIKRIQQQTNTYIITPSRDRDP 266
BLAST of RNA binding protein MEX3B vs. Ensembl Human
Match: MEX3C (mex-3 RNA binding family member C [Source:HGNC Symbol;Acc:HGNC:28040]) HSP 1 Score: 53.9138 bits (128), Expect = 5.110e-7 Identity = 48/146 (32.88%), Postives = 69/146 (47.26%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ +F++ R I A ++ R N +L G + + S P T + VP +VG ++G G+ I IQ+ T T I +P +D P Sbjct: 66 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVAMAKREILSAAEHFSMIRASRNKNGPAL--------GGL----SCSPNLPGQTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEP 199
BLAST of RNA binding protein MEX3B vs. Ensembl Human
Match: MEX3D (mex-3 RNA binding family member D [Source:HGNC Symbol;Acc:HGNC:16734]) HSP 1 Score: 53.5286 bits (127), Expect = 6.417e-7 Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VFI+ Sbjct: 7 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 50
BLAST of RNA binding protein MEX3B vs. Ensembl Human
Match: MEX3D (mex-3 RNA binding family member D [Source:HGNC Symbol;Acc:HGNC:16734]) HSP 1 Score: 53.9138 bits (128), Expect = 7.088e-7 Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VFI+ Sbjct: 183 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 226
BLAST of RNA binding protein MEX3B vs. Ensembl Human
Match: MEX3B (mex-3 RNA binding family member B [Source:HGNC Symbol;Acc:HGNC:25297]) HSP 1 Score: 53.1434 bits (126), Expect = 1.144e-6 Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1 Query: 343 SLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528 SLY E N + V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VF++ Sbjct: 53 SLYDSEPRKKSVNMTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVV 113
BLAST of RNA binding protein MEX3B vs. Ensembl Celegans
Match: mex-3 (Muscle EXcess [Source:UniProtKB/TrEMBL;Acc:V6CKQ3]) HSP 1 Score: 60.4622 bits (145), Expect = 1.410e-9 Identity = 57/177 (32.20%), Postives = 76/177 (42.94%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEIT-INRQRENNQKVSLLMNISNRFGTVKPYNAISSLR-PILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP-------SHNNCKAKFEI--LVYQRNNTI 894 V VPT EHV+EIVG+QG KIK +R KT I TP ED +F++ R I A T I R + Q V G P S +R P+ G++ PK I IQ+DT T I +P ++ P HN A+ EI ++QR + Sbjct: 51 VEVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEDPIFVVTGRLEDVNEAKREIDCAAEHFTQIRASRRHTQVVP---------GAHAPGQITSYVRVPLRVVGLVVGPKGAT----------IKRIQQDTHTYIITPSREREPVFEVTGLPHNVEAARKEIETHIFQRTGNL 208
BLAST of RNA binding protein MEX3B vs. Ensembl Celegans
Match: mex-3 (Muscle EXcess [Source:UniProtKB/TrEMBL;Acc:V6CKQ3]) HSP 1 Score: 59.3066 bits (142), Expect = 3.354e-9 Identity = 56/177 (31.64%), Postives = 75/177 (42.37%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEIT-INRQRENNQKVSLLMNISNRFGTVKPYNAISSLR-PILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP-------SHNNCKAKFEI--LVYQRNNTI 894 V VPT EHV+EIVG+QG KIK +R KT I TP ED +F++ R I A T I R + Q G P S +R P+ G++ PK I IQ+DT T I +P ++ P HN A+ EI ++QR + Sbjct: 82 VEVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEDPIFVVTGRLEDVNEAKREIDCAAEHFTQIRASRRHTQ------------GAHAPGQITSYVRVPLRVVGLVVGPKGAT----------IKRIQQDTHTYIITPSREREPVFEVTGLPHNVEAARKEIETHIFQRTGNL 236
BLAST of RNA binding protein MEX3B vs. Ensembl Fly
Match: CG11360 (gene:FBgn0039920 transcript:FBtr0310539) HSP 1 Score: 56.6102 bits (135), Expect = 4.531e-8 Identity = 56/191 (29.32%), Postives = 89/191 (46.60%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQR----ENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAM 957 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VF++ R I A+ ++ R ++Q ++ + ++ G P + P T + VP +VG ++G G+ I IQ++T T I +P ++ P FE+ N +D KQ+ AH+A+ Sbjct: 127 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVNKAKREILSAADHFSLIRASRKPVSDSQNNGMVGSTTSSGGGAVPRMSGPPCMPGQVTIQVRVPYRVVGLVVGPKGATIKHIQQETQTYIVTPSREKEP-------IFEVTGLPDN--VDTAR--------KQIEAHIAL 300
BLAST of RNA binding protein MEX3B vs. Ensembl Fly
Match: CG11360 (gene:FBgn0039920 transcript:FBtr0310540) HSP 1 Score: 56.6102 bits (135), Expect = 4.531e-8 Identity = 56/191 (29.32%), Postives = 89/191 (46.60%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQR----ENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAM 957 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VF++ R I A+ ++ R ++Q ++ + ++ G P + P T + VP +VG ++G G+ I IQ++T T I +P ++ P FE+ N +D KQ+ AH+A+ Sbjct: 127 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVNKAKREILSAADHFSLIRASRKPVSDSQNNGMVGSTTSSGGGAVPRMSGPPCMPGQVTIQVRVPYRVVGLVVGPKGATIKHIQQETQTYIVTPSREKEP-------IFEVTGLPDN--VDTAR--------KQIEAHIAL 300
BLAST of RNA binding protein MEX3B vs. Ensembl Fly
Match: CG11360 (gene:FBgn0039920 transcript:FBtr0310541) HSP 1 Score: 56.6102 bits (135), Expect = 4.531e-8 Identity = 56/191 (29.32%), Postives = 89/191 (46.60%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQR----ENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAM 957 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VF++ R I A+ ++ R ++Q ++ + ++ G P + P T + VP +VG ++G G+ I IQ++T T I +P ++ P FE+ N +D KQ+ AH+A+ Sbjct: 127 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVNKAKREILSAADHFSLIRASRKPVSDSQNNGMVGSTTSSGGGAVPRMSGPPCMPGQVTIQVRVPYRVVGLVVGPKGATIKHIQQETQTYIVTPSREKEP-------IFEVTGLPDN--VDTAR--------KQIEAHIAL 300
BLAST of RNA binding protein MEX3B vs. Ensembl Fly
Match: CG11360 (gene:FBgn0039920 transcript:FBtr0089091) HSP 1 Score: 56.6102 bits (135), Expect = 4.531e-8 Identity = 56/191 (29.32%), Postives = 89/191 (46.60%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQR----ENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAM 957 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VF++ R I A+ ++ R ++Q ++ + ++ G P + P T + VP +VG ++G G+ I IQ++T T I +P ++ P FE+ N +D KQ+ AH+A+ Sbjct: 127 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVNKAKREILSAADHFSLIRASRKPVSDSQNNGMVGSTTSSGGGAVPRMSGPPCMPGQVTIQVRVPYRVVGLVVGPKGATIKHIQQETQTYIVTPSREKEP-------IFEVTGLPDN--VDTAR--------KQIEAHIAL 300
BLAST of RNA binding protein MEX3B vs. Ensembl Zebrafish
Match: FO082781.1 (mex-3 RNA binding family member A [Source:NCBI gene;Acc:100332760]) HSP 1 Score: 57.3806 bits (137), Expect = 2.699e-8 Identity = 51/148 (34.46%), Postives = 72/148 (48.65%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQR--ENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VF LI R ++ + R+ + S+L N+F P + P T + VP +VG ++G GS I IQ+ T T I +P +D +P Sbjct: 122 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF--------------LITGRKEDVALARREIISAAEHFSMLRASRNKFSGSPP-----APLPGQTTIQVRVPYRVVGLVVGPKGSTIKRIQQQTCTYIVTPSRDRDP 250
BLAST of RNA binding protein MEX3B vs. Ensembl Zebrafish
Match: mex3b (mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628]) HSP 1 Score: 53.9138 bits (128), Expect = 3.706e-7 Identity = 60/187 (32.09%), Postives = 86/187 (45.99%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAM 957 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VF++ R I A ++ R N+ SL N + P N P T + VP +VG ++G G+ I IQ+ T T I +P +D P FE+ + E V R + +++ AH+AM Sbjct: 62 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRREDVAMARREIISAAEHFSMIRA-SRNKNSSLNGNAT----VPGPPNL-----PGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEP-------VFEV--------TGMPENVDRAR--EEIEAHIAM 221
BLAST of RNA binding protein MEX3B vs. Ensembl Xenopus
Match: MEX3B (mex-3 RNA binding family member B [Source:NCBI gene;Acc:100490923]) HSP 1 Score: 57.3806 bits (137), Expect = 4.811e-8 Identity = 50/146 (34.25%), Postives = 68/146 (46.58%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VF++ R I A ++ R N +L N P N P T + VP +VG ++G G+ I IQ+ T T I +P +D P Sbjct: 63 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMIRASRNKNAAAL-----NGGSVPAPPNL-----PGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEP 198
BLAST of RNA binding protein MEX3B vs. Ensembl Xenopus
Match: mex3d (mex-3 RNA binding family member D [Source:NCBI gene;Acc:100144717]) HSP 1 Score: 55.8398 bits (133), Expect = 1.592e-7 Identity = 47/147 (31.97%), Postives = 64/147 (43.54%), Query Frame = 1 Query: 394 GVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834 GV VP+ EHV+EIVG+QG KIK +R KT I TP E+ +FI+ R I A +I R N K S + + ++ I P G++ PK I IQ+ T T I +P +D P Sbjct: 239 GVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPIRGEEPIFIVTGRKEDVEMAKREILAAAEHFSIIRATRN--KASGIPGATQSPPSLPGQTTIQVRVPYRVVGLVVGPKGAT----------IKKIQQSTHTYIVTPSRDKEP 373
BLAST of RNA binding protein MEX3B vs. Ensembl Xenopus
Match: mex3d (mex-3 RNA binding family member D [Source:NCBI gene;Acc:100144717]) HSP 1 Score: 55.0694 bits (131), Expect = 2.315e-7 Identity = 47/147 (31.97%), Postives = 64/147 (43.54%), Query Frame = 1 Query: 394 GVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834 GV VP+ EHV+EIVG+QG KIK +R KT I TP E+ +FI+ R I A +I R N K S + + ++ I P G++ PK I IQ+ T T I +P +D P Sbjct: 239 GVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPIRGEEPIFIVTGRKEDVEMAKREILAAAEHFSIIRATRN--KASGIPGATQSPPSLPGQTTIQVRVPYRVVGLVVGPKGAT----------IKKIQQSTHTYIVTPSRDKEP 373
BLAST of RNA binding protein MEX3B vs. Ensembl Xenopus
Match: atp6ap2 (ATPase, H+ transporting, lysosomal accessory protein 2 [Source:Xenbase;Acc:XB-GENE-964301]) HSP 1 Score: 54.6842 bits (130), Expect = 3.290e-7 Identity = 48/146 (32.88%), Postives = 69/146 (47.26%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VF++ R I A ++ R N ++ G V+ + P T + VP +VG ++G G+ I IQ+ T T I +P +D P Sbjct: 80 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMAKREILSAAEHFSMIRASRNKNAPAV--------GNVQ----CAPNLPGQTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEP 213
BLAST of RNA binding protein MEX3B vs. Ensembl Mouse
Match: Mex3a (mex3 RNA binding family member A [Source:MGI Symbol;Acc:MGI:1919890]) HSP 1 Score: 57.7658 bits (138), Expect = 2.625e-8 Identity = 49/146 (33.56%), Postives = 69/146 (47.26%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834 V VPT EHV+EIVG+QG KIK +R KT I TP E+ VF++ T R I A ++ R N + FG ++R + VP +VG ++G G+ I IQ+ T T I +P +D +P Sbjct: 136 VPVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFMVTGRREDVATARREIISAAEHFSMIRASRNKSGAA--------FGVAPALPGQVTIR-------VRVPYRVVGLVVGPKGATIKRIQQQTNTYIITPSRDRDP 266
BLAST of RNA binding protein MEX3B vs. Ensembl Mouse
Match: Mex3d (mex3 RNA binding family member D [Source:MGI Symbol;Acc:MGI:2681847]) HSP 1 Score: 53.9138 bits (128), Expect = 4.195e-7 Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VFI+ Sbjct: 238 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 281
BLAST of RNA binding protein MEX3B vs. Ensembl Mouse
Match: Mex3b (mex3 RNA binding family member B [Source:MGI Symbol;Acc:MGI:1918252]) HSP 1 Score: 52.7582 bits (125), Expect = 9.562e-7 Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VF++ Sbjct: 77 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVV 120
BLAST of RNA binding protein MEX3B vs. Ensembl Mouse
Match: Mex3c (mex3 RNA binding family member C [Source:MGI Symbol;Acc:MGI:2652843]) HSP 1 Score: 52.7582 bits (125), Expect = 1.023e-6 Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ +F++ Sbjct: 229 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVV 272
BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Match: sp|A1L3F4|MEX3B_XENLA (RNA-binding protein MEX3B OS=Xenopus laevis OX=8355 GN=mex3b PE=2 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.032e-7 Identity = 50/146 (34.25%), Postives = 69/146 (47.26%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834 V+VP+ EHV+EIVG+QG KIK +R KT I TP E+ VF++ R I A ++ R N +L N P N P T + VP +VG ++G G+ I IQ+ T T I +P +D P Sbjct: 63 VQVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVALARREIISAAEHFSMIRASRNKNAAAL-----NGGSVPAPPNL-----PGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEP 198
BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Match: sp|A1L020|MEX3A_HUMAN (RNA-binding protein MEX3A OS=Homo sapiens OX=9606 GN=MEX3A PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.241e-7 Identity = 49/146 (33.56%), Postives = 69/146 (47.26%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834 V VPT EHV+EIVG+QG KIK +R KT I TP E+ VF++ T R I A ++ R N + FG ++R + VP +VG ++G G+ I IQ+ T T I +P +D +P Sbjct: 136 VPVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFMVTGRREDVATARREIISAAEHFSMIRASRNKSGAA--------FGVAPALPGQVTIR-------VRVPYRVVGLVVGPKGATIKRIQQQTNTYIITPSRDRDP 266
BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Match: sp|Q86XN8|MEX3D_HUMAN (RNA-binding protein MEX3D OS=Homo sapiens OX=9606 GN=MEX3D PE=1 SV=3) HSP 1 Score: 53.9138 bits (128), Expect = 3.404e-6 Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VFI+ Sbjct: 183 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 226
BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Match: sp|Q3UE17|MEX3D_MOUSE (RNA-binding protein MEX3D OS=Mus musculus OX=10090 GN=Mex3d PE=1 SV=2) HSP 1 Score: 53.5286 bits (127), Expect = 3.920e-6 Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VFI+ Sbjct: 164 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 207
BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Match: sp|Q6ZN04|MEX3B_HUMAN (RNA-binding protein MEX3B OS=Homo sapiens OX=9606 GN=MEX3B PE=1 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 5.493e-6 Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1 Query: 343 SLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528 SLY E N + V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VF++ Sbjct: 53 SLYDSEPRKKSVNMTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVV 113
BLAST of RNA binding protein MEX3B vs. TrEMBL
Match: A0A0R3SVM1 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS9634 PE=4 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 2.670e-50 Identity = 162/446 (36.32%), Postives = 222/446 (49.78%), Query Frame = 1 Query: 223 YIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITIN------RQRENNQKVSLLMNISNRFGTVK------------------PYNAISSLRPILATGI---------------------------------------IEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKD--NNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRIXXXXXXXXXXHSDYKIYDPSAMSSIDRYEELPAQSVSLSSYKQINPYKV-----NGFEISQFPS 1350 YI A++ GFIVG ELE++K SRRS IS+ F++ YG+ + +Y Q+GVRVPTK+HVSEIVGK G KIK IRE+TGALI TPGE+EDHVFIIEA P IAL VA LI +RA EIT + R+R + + ++ N G P I S P+L + + I VP+++VG+IIGT GSIITTIQKDTGTEI+SPPK+ PS ++FEI YQ + VQ+A R++ AKQLI H+ M Q ER +EE +N S + N D + + + N ++W+W D+ +++ + A +V+ RIL E + S R +EL A + S + +P + N F I FP+ Sbjct: 178 YINYARSKGFIVGQELEHIKENSRRSTSHTYG-RISVYFRNRYGETEAKTKASYLQLGVRVPTKDHVSEIVGKGGQKIKLIREETGALITTPGENEDHVFIIEAPPEIALKVAELIANRALEITQSKANASERRRGSTNSIPGCASLFNGNGITSATTINGGQRLISRSPDDLPNATIPSPSPLLKSPLTNGGNYSNENGFFSSNGNGLSNGGSNNSGTTRTLLARSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPS---ATSEFEISAYQSQG-MTVQDAEARVQQAKQLIGHLVMRQFERRYSEELDDNNTGNGSSAKSRNNSNGEDFDGNSGGKTTTNNTTSGVAWMWPDVQQMDAKEAQDVLDRILAE-----------------SKSKTRRVKELQAAAASTTGSLPASPCGLVSGGNNSFAIEFFPT 601
BLAST of RNA binding protein MEX3B vs. TrEMBL
Match: A0A0R3UGA8 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS6241 PE=4 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 5.914e-48 Identity = 145/375 (38.67%), Postives = 191/375 (50.93%), Query Frame = 1 Query: 223 YIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITIN------RQRENNQKVSLLM----------------NISNRFGTVKPYNAISSLRPILATGI----------------------------------IEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKD--NNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRI 1173 Y AQ G+IVG ELE +K SRRS IS +F++ YG+ + +Y Q+GVRVP+K+HVSEIVGK G KIK IRE+TGALI TPGE EDHVFIIEA P IAL VA LI RA EIT + R+R + + M + NR P ++ S P+L T + I VP+++VG+IIGT GSIITTIQKDTGTEI+SPPK+ PS ++FEI YQ Q A R++ AKQLI H+ M Q ER +EE + K S G+ + + +++ W+W D+ +++ A EV+ RI Sbjct: 218 YNSMAQKRGYIVGAELERIKENSRRSTSHTY-GRISAHFRNRYGETEAKTKASYMQLGVRVPSKDHVSEIVGKGGQKIKLIREETGALITTPGEYEDHVFIIEAPPEIALHVAELISTRAQEITQSKMSASERRRGSTSSIPGCMALFSMNSINGSAPSNGRLMNRSPDDLPTGSLPSPAPLLKTNVNSGSDAATFAFSNGLSSGNNVGGSSGRILLARSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPS---ATSEFEISAYQSLGMTSNQAAECRVQQAKQLIGHLVMRQFERRASEE------LDEGGGCSGKPRANSTGDDCDENGSASSRNSKTVGWMWPDVAQMDSTEAREVLDRI 582
BLAST of RNA binding protein MEX3B vs. TrEMBL
Match: A0A0R3T6J8 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS2685 PE=4 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 7.285e-33 Identity = 75/124 (60.48%), Postives = 91/124 (73.39%), Query Frame = 1 Query: 223 YIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEIT 594 YI A++ GFIVG ELE++K SRRS IS +F++ YG+ + +Y Q+GVRVPTK+HVSEIVGK G KIK IRE+TGALI TPGE+EDHVFIIEA P IAL VA LI +RA EI+ Sbjct: 180 YINYARSKGFIVGQELEHIKENSRRSTSHTYG-RISAHFRNRYGETEAKTKASYLQLGVRVPTKDHVSEIVGKGGQKIKLIREETGALITTPGENEDHVFIIEAPPEIALKVADLITNRAQEIS 302 HSP 2 Score: 78.9518 bits (193), Expect = 1.647e-11 Identity = 62/164 (37.80%), Postives = 95/164 (57.93%), Query Frame = 1 Query: 688 SLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKD--NNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRI 1173 + R +L+ I VP+++VG+IIGT GSIITTIQKDTGTEI+SPPK+ PS ++FEI YQ + Q+A R++ AKQLI H+ M Q ER +EE +N S N + + ++ + ++W+W D+ +++ + A +V+ RI Sbjct: 398 TTRTLLSRSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPS---ATSEFEISAYQSQG-MTAQDAEARVQQAKQLIGHLVMRQFERRYSEELEDNNTGNGSSGKSRNNSNGEESDRNSNGKTATTNVSNGVAWMWPDVQQMDAKEAQDVLDRI 557
BLAST of RNA binding protein MEX3B vs. TrEMBL
Match: A0A068XYZ9 (RNA binding protein MEX3B OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000495700 PE=4 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 1.803e-32 Identity = 83/186 (44.62%), Postives = 108/186 (58.06%), Query Frame = 1 Query: 166 WQEVNVDYDKKSVDFTYSD---YIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITIN------RQRENNQKVSLLMNISNRFGTVKPYNAISSLR 696 W +N + ++ D Y AQ G+IVG ELE +K SRRS IS +F++ YG+ + +Y Q+GVRVP+K+HVSEIVGK G KIK IRE+TGALI TPGE EDHVFIIEA P IAL VA LI RA EIT + R+R + + M++ + G+V + R Sbjct: 184 WSAINTAANSQACGLFMQDRLFYNSVAQKRGYIVGPELERIKENSRRSTSHTY-GRISAHFRNRYGETEAKTKASYMQLGVRVPSKDHVSEIVGKGGQKIKLIREETGALITTPGEYEDHVFIIEAPPEIALHVAELISTRAQEITQSKMSASERRRGSTSSIPGCMSLFSVNGSVGASSGTGGGR 368 HSP 2 Score: 82.0333 bits (201), Expect = 1.835e-12 Identity = 67/162 (41.36%), Postives = 93/162 (57.41%), Query Frame = 1 Query: 694 RPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKD--NNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRI 1173 R +LA I VP+++VG+IIGT GSIITTIQKDTGTEI+SPPK+ PS ++FEI YQ Q A R++ AKQLI H+ M Q ER +EE L+ + N S N D E + ++++W+W D+ +++ A EV+ RI Sbjct: 445 RILLARSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPS---ATSEFEISAYQSLGMTSNQAAECRVQQAKQLIGHLVMRQFERRASEE-------LEDGPAGSSNAGKSRSNSAGD-EAEESKTSKTVAWMWPDVAQMDSDEAREVLDRI 595
BLAST of RNA binding protein MEX3B vs. TrEMBL
Match: U6J6B3 (RNA-binding protein MEX3B OS=Echinococcus granulosus OX=6210 GN=EGR_08517 PE=4 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 4.599e-32 Identity = 83/186 (44.62%), Postives = 108/186 (58.06%), Query Frame = 1 Query: 166 WQEVNVDYDKKSVDFTYSD---YIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITIN------RQRENNQKVSLLMNISNRFGTVKPYNAISSLR 696 W +N + ++ D Y AQ G+IVG ELE +K SRRS IS +F++ YG+ + +Y Q+GVRVP+K+HVSEIVGK G KIK IRE+TGALI TPGE EDHVFIIEA P IAL VA LI RA EIT + R+R + + M++ + G+V + R Sbjct: 184 WSAINTAANSQASGLFMQDRLFYNSVAQKRGYIVGPELERIKENSRRSTSHTY-GRISAHFRNRYGETEAKTKASYMQLGVRVPSKDHVSEIVGKGGQKIKLIREETGALITTPGEYEDHVFIIEAPPEIALHVAELISTRAQEITQSKMSASERRRGSTSSIPGCMSLFSVNGSVGASSGTGGGR 368 HSP 2 Score: 82.0333 bits (201), Expect = 1.792e-12 Identity = 67/162 (41.36%), Postives = 93/162 (57.41%), Query Frame = 1 Query: 694 RPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKD--NNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRI 1173 R +LA I VP+++VG+IIGT GSIITTIQKDTGTEI+SPPK+ PS ++FEI YQ Q A R++ AKQLI H+ M Q ER +EE L+ + N S N D E + ++++W+W D+ +++ A EV+ RI Sbjct: 445 RILLARSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPS---ATSEFEISAYQSLGMTSNQAAECRVQQAKQLIGHLVMRQFERRASEE-------LEDGPAGSSNAGKSRSNSAGD-EAEESKTSKTVAWMWPDVAQMDSDEAREVLDRI 595
BLAST of RNA binding protein MEX3B vs. Ensembl Cavefish
Match: ENSAMXT00000025356.2 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000037.1:51923:60658:1 gene:ENSAMXG00000024633.2 transcript:ENSAMXT00000025356.2 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 56.6102 bits (135), Expect = 4.782e-8 Identity = 52/150 (34.67%), Postives = 74/150 (49.33%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQR--ENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIE--VPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VF LI R ++ + R+ + S+L N+ G +N S P+ I+ VP +VG ++G GS I IQ+ T T I +P +D +P Sbjct: 113 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF--------------LITGRKEDVALARREIISAAEHFSMLRASRNKLGVS--FNG-SPPTPLPGQTTIQVRVPYRVVGLVVGPKGSTIKRIQQQTCTYIVTPSRDRDP 245
BLAST of RNA binding protein MEX3B vs. Ensembl Cavefish
Match: MEX3D (mex-3 RNA binding family member D [Source:HGNC Symbol;Acc:HGNC:16734]) HSP 1 Score: 53.5286 bits (127), Expect = 4.163e-7 Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VFI+ Sbjct: 45 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 88
BLAST of RNA binding protein MEX3B vs. Ensembl Cavefish
Match: mex3b (mex-3 RNA binding family member B [Source:NCBI gene;Acc:103046405]) HSP 1 Score: 53.5286 bits (127), Expect = 4.429e-7 Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEA 534 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VF++ Sbjct: 62 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTG 107
BLAST of RNA binding protein MEX3B vs. Ensembl Nematostella
Match: EDO32414 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SV60]) HSP 1 Score: 58.5362 bits (140), Expect = 6.244e-10 Identity = 59/179 (32.96%), Postives = 83/179 (46.37%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEIT-INRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP-------SHNNCKAKFEILVYQRNNTIDVQEA 909 V VP+ EHV+EIVG+QG KIK +R KT I TP ED VF++ R I A + I QR+NN SL + + +T ++ VP +VG ++G G+ I IQ+ T T I +P +D P N A+ EIL + N T + +A Sbjct: 10 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEDPVFVVTGRKEDVTLAKREIISAAEHFSQIRAQRKNNSLNSLAPGPPSPSVPGQ------------STILVRVPYRVVGLVVGPKGATIKRIQQQTNTYIVTPSRDKEPVFEVTGSGENVESARNEILNHISNRTGGLLDA 176
BLAST of RNA binding protein MEX3B vs. Ensembl Medaka
Match: ENSORLT00000028704.1 (mex-3 RNA binding family member A [Source:NCBI gene;Acc:111948930]) HSP 1 Score: 60.4622 bits (145), Expect = 2.815e-9 Identity = 58/181 (32.04%), Postives = 88/181 (48.62%), Query Frame = 1 Query: 298 SLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQR--ENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834 +++Q S ++ ++S G E G N + V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VF LI R ++ + R+ + S+L N+ G + + L P T + VP +VG ++G GS I IQ+ T T I +P +D +P Sbjct: 145 AILQGKSKLCAL-YESGSGGETKGRGCNITEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF--------------LITGRKEDVALARREIISAAEHFSMLRASRNKLGVSFSGSPPTPL-PGQTTIQVRVPYRVVGLVVGPKGSTIKRIQQQTCTYIVTPSRDRDP 308
BLAST of RNA binding protein MEX3B vs. Ensembl Medaka
Match: ENSORLT00000006291.2 (RNA-binding protein MEX3B [Source:NCBI gene;Acc:101170521]) HSP 1 Score: 55.4546 bits (132), Expect = 1.112e-7 Identity = 46/147 (31.29%), Postives = 64/147 (43.54%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLR-PILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834 V VP+ EHV+EIVG+QG KIK +R KT I TP E VF++ R I A ++ R N K L++++ P +R P G++ PK I IQ+ T T I +P +D P Sbjct: 199 VAVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEQPVFVVTGRKEDVAMAKREILSAAEHFSLIRASRN--KTGPLLSVTALGTPTLPGQTTIQVRVPYRVVGLVVGPKGAT----------IKRIQQQTHTYIVTPSRDKEP 333
BLAST of RNA binding protein MEX3B vs. Ensembl Medaka
Match: MEX3D (mex-3 RNA binding family member D [Source:NCBI gene;Acc:101171527]) HSP 1 Score: 52.7582 bits (125), Expect = 7.205e-7 Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VFI+ Sbjct: 152 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 195
BLAST of RNA binding protein MEX3B vs. Ensembl Medaka
Match: MEX3D (mex-3 RNA binding family member D [Source:NCBI gene;Acc:101171527]) HSP 1 Score: 52.7582 bits (125), Expect = 7.850e-7 Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 Query: 397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528 V VP+ EHV+EIVG+QG KIK +R KT I TP E+ VFI+ Sbjct: 152 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 195
BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Match: SMESG000071674.1 (SMESG000071674.1) HSP 1 Score: 906.36 bits (2341), Expect = 0.000e+0 Identity = 467/469 (99.57%), Postives = 467/469 (99.57%), Query Frame = 1 Query: 70 MPTDIMKETDRIRFPSNINDGLNQKFLEIKSIWQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRIXXXXXXXXXXHSDYKIYDPSAMSSIDRYEELPAQSVSLSSYKQINPYKVNGFEISQFPSTIYNENTPILKTSTSPISLNSSRIVENSNNQFSLTNNYHGRC 1476 MPTDIMKETDRIRF SNINDGLNQKFLEIKSIWQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVGRIIGTHGSIITTIQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRILEESKKKSKLHSDYKIYDPSAMSSIDRYEELPAQSVSLSSYKQIN YKVNGFEISQFPSTIYNENTPILKTSTSPISLNSSRIVENSNNQFSLTNNYHGRC Sbjct: 1 MPTDIMKETDRIRFTSNINDGLNQKFLEIKSIWQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVGRIIGTHGSIITTIQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRILEESKKKSKLHSDYKIYDPSAMSSIDRYEELPAQSVSLSSYKQINSYKVNGFEISQFPSTIYNENTPILKTSTSPISLNSSRIVENSNNQFSLTNNYHGRC 469
BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Match: SMESG000071674.1 (SMESG000071674.1) HSP 1 Score: 894.419 bits (2310), Expect = 0.000e+0 Identity = 462/464 (99.57%), Postives = 462/464 (99.57%), Query Frame = 1 Query: 85 MKETDRIRFPSNINDGLNQKFLEIKSIWQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRIXXXXXXXXXXHSDYKIYDPSAMSSIDRYEELPAQSVSLSSYKQINPYKVNGFEISQFPSTIYNENTPILKTSTSPISLNSSRIVENSNNQFSLTNNYHGRC 1476 MKETDRIRF SNINDGLNQKFLEIKSIWQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVGRIIGTHGSIITTIQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRILEESKKKSKLHSDYKIYDPSAMSSIDRYEELPAQSVSLSSYKQIN YKVNGFEISQFPSTIYNENTPILKTSTSPISLNSSRIVENSNNQFSLTNNYHGRC Sbjct: 1 MKETDRIRFTSNINDGLNQKFLEIKSIWQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVGRIIGTHGSIITTIQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRILEESKKKSKLHSDYKIYDPSAMSSIDRYEELPAQSVSLSSYKQINSYKVNGFEISQFPSTIYNENTPILKTSTSPISLNSSRIVENSNNQFSLTNNYHGRC 464
BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Match: SMESG000062702.1 (SMESG000062702.1) HSP 1 Score: 306.99 bits (785), Expect = 4.765e-95 Identity = 209/410 (50.98%), Postives = 272/410 (66.34%), Query Frame = 1 Query: 130 GLNQKFLEIKSI--WQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSL-----RPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKD-NNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSI--------SSWEKNLPA-----SDGN------VFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRIXXXXXXXXXXHSDYKIYDPS--AMSSIDRYEELPA 1272 G+N+ F + S W VD + K DF EAQ GFIVG ELENVKAKS RS++Q + I F+ YG+ ++ ++ Y Q+GVRVP+KEHVSEIVGKQG KIK+IREKTGALI TPGE EDHVFIIEA P AL VA+++K+RA +IT++R +E+ ++ S + +NR P A S + + +LA+G I+VPK IVGRIIGT GSIITTIQ+DTGTEIRSPPK+ P N A FEILVYQ N D+ EA QR+ NAKQLIAHVAMHQ+E+IRAEE+P+SNY+++S SS E NL +D N + +++KLL QM+ W+W+D+++LED +A EVV RILEESKKK+K S+ IYD + + ++D E P Sbjct: 127 GINRGFSDPTSQTQWSHDLVD-ENKVRDFC----ALEAQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRRSSCPITNNNRPSNRSP--AASGITQAGSKVVLASGRIQVPKIIVGRIIGTQGSIITTIQRDTGTEIRSPPKEIGKPK--NSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEESKKKTKTRSEPSIYDDNTKGLFTLDETESFPT 527
BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Match: SMESG000062702.1 (SMESG000062702.1) HSP 1 Score: 306.99 bits (785), Expect = 6.024e-95 Identity = 209/410 (50.98%), Postives = 272/410 (66.34%), Query Frame = 1 Query: 130 GLNQKFLEIKSI--WQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSL-----RPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKD-NNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSI--------SSWEKNLPA-----SDGN------VFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRIXXXXXXXXXXHSDYKIYDPS--AMSSIDRYEELPA 1272 G+N+ F + S W VD + K DF EAQ GFIVG ELENVKAKS RS++Q + I F+ YG+ ++ ++ Y Q+GVRVP+KEHVSEIVGKQG KIK+IREKTGALI TPGE EDHVFIIEA P AL VA+++K+RA +IT++R +E+ ++ S + +NR P A S + + +LA+G I+VPK IVGRIIGT GSIITTIQ+DTGTEIRSPPK+ P N A FEILVYQ N D+ EA QR+ NAKQLIAHVAMHQ+E+IRAEE+P+SNY+++S SS E NL +D N + +++KLL QM+ W+W+D+++LED +A EVV RILEESKKK+K S+ IYD + + ++D E P Sbjct: 143 GINRGFSDPTSQTQWSHDLVD-ENKVRDFC----ALEAQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRRSSCPITNNNRPSNRSP--AASGITQAGSKVVLASGRIQVPKIIVGRIIGTQGSIITTIQRDTGTEIRSPPKEIGKP--KNSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEESKKKTKTRSEPSIYDDNTKGLFTLDETESFPT 543
BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Match: SMESG000025422.1 (SMESG000025422.1) HSP 1 Score: 169.088 bits (427), Expect = 1.475e-44 Identity = 127/320 (39.69%), Postives = 182/320 (56.88%), Query Frame = 1 Query: 220 DYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQ-NYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQE-AVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRI 1173 +Y A GF+VG +L+ V +S ++ S+ IS F+ +G + + Q Y +GVRVP+KEHVSEIVGK+G KIK IR+ TGALI TP E EDHVF+IEA+P A+ V ++I+ A++IT N+ L NI+ G + R LAT I VP+ +VG++IGT GSIITT+QK+TGTEI+SPPKD + + A FEI VY+ N T++ +E A +I AKQLIAH+ M ++ +P S+ +GN + S W+W ++ R++D A E++ RI Sbjct: 190 EYQSMASKMGFLVGQDLDEVLNRSA-TMKNSNSSRISNFFKHKHGSSGSHLTQKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITRNK----------LGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDT-ADFEISVYE-NGTVNSEETAWLQIHRAKQLIAHLVMRVWDQQPRNSTPSSD----------------EGNCTPN--------TCSPEWIWPEVSRMDDGDAKEIIDRI 472 The following BLAST results are available for this feature:
BLAST of RNA binding protein MEX3B vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of RNA binding protein MEX3B vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of RNA binding protein MEX3B vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 4
BLAST of RNA binding protein MEX3B vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of RNA binding protein MEX3B vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of RNA binding protein MEX3B vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of RNA binding protein MEX3B vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of RNA binding protein MEX3B vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of RNA binding protein MEX3B vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of RNA binding protein MEX3B vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of RNA binding protein MEX3B vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of RNA binding protein MEX3B vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 4
BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30000222 ID=SMED30000222|Name=RNA binding protein MEX3B|organism=Schmidtea mediterranea sexual|type=transcript|length=1670bpback to top protein sequence of SMED30000222-orf-1 >SMED30000222-orf-1 ID=SMED30000222-orf-1|Name=SMED30000222-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=490bp MPTDIMKETDRIRFPSNINDGLNQKFLEIKSIWQEVNVDYDKKSVDFTYSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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