RNA binding protein MEX3B

Overview


Name	RNA binding protein MEX3B
Smed ID	SMED30000222
Length (bp)	1670

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of RNA binding protein MEX3B (SMED30000222) t-SNE clustered cells

Violin plots show distribution of expression levels for RNA binding protein MEX3B (SMED30000222) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA binding protein MEX3B (SMED30000222) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RNA binding protein MEX3B (SMED30000222) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30000222

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 3

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
protonephridia	SMED30000222	h1SMcG0007720	dd_Smed_v4_6053_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
anterior side	SMED30000222	h1SMcG0007720	dd_Smed_v4_6053_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30000222	h1SMcG0007720	dd_Smed_v4_6053_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of RNA binding protein MEX3B vs. Ensembl Human
Match: MEX3A (mex-3 RNA binding family member A [Source:HGNC Symbol;Acc:HGNC:33482])

HSP 1 Score: 58.151 bits (139), Expect = 2.584e-8
Identity = 49/146 (33.56%), Postives = 69/146 (47.26%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834
            V VPT EHV+EIVG+QG KIK +R KT   I TP   E+ VF++        T  R I   A   ++ R   N    +        FG         ++R       + VP  +VG ++G  G+ I  IQ+ T T I +P +D +P
Sbjct:  136 VPVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFMVTGRREDVATARREIISAAEHFSMIRASRNKSGAA--------FGVAPALPGQVTIR-------VRVPYRVVGLVVGPKGATIKRIQQQTNTYIITPSRDRDP 266

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Human
Match: MEX3C (mex-3 RNA binding family member C [Source:HGNC Symbol;Acc:HGNC:28040])

HSP 1 Score: 53.9138 bits (128), Expect = 5.110e-7
Identity = 48/146 (32.88%), Postives = 69/146 (47.26%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ +F++           R I   A   ++ R   N    +L        G +    + S   P   T  + VP  +VG ++G  G+ I  IQ+ T T I +P +D  P
Sbjct:   66 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVAMAKREILSAAEHFSMIRASRNKNGPAL--------GGL----SCSPNLPGQTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEP 199

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Human
Match: MEX3D (mex-3 RNA binding family member D [Source:HGNC Symbol;Acc:HGNC:16734])

HSP 1 Score: 53.5286 bits (127), Expect = 6.417e-7
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VFI+
Sbjct:    7 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 50

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Human
Match: MEX3D (mex-3 RNA binding family member D [Source:HGNC Symbol;Acc:HGNC:16734])

HSP 1 Score: 53.9138 bits (128), Expect = 7.088e-7
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VFI+
Sbjct:  183 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 226

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Human
Match: MEX3B (mex-3 RNA binding family member B [Source:HGNC Symbol;Acc:HGNC:25297])

HSP 1 Score: 53.1434 bits (126), Expect = 1.144e-6
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1

Query:  343 SLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528
            SLY  E      N  +  V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VF++
Sbjct:   53 SLYDSEPRKKSVNMTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVV 113

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Celegans
Match: mex-3 (Muscle EXcess [Source:UniProtKB/TrEMBL;Acc:V6CKQ3])

HSP 1 Score: 60.4622 bits (145), Expect = 1.410e-9
Identity = 57/177 (32.20%), Postives = 76/177 (42.94%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEIT-INRQRENNQKVSLLMNISNRFGTVKPYNAISSLR-PILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP-------SHNNCKAKFEI--LVYQRNNTI 894
            V VPT EHV+EIVG+QG KIK +R KT   I TP   ED +F++           R I   A   T I   R + Q V          G   P    S +R P+   G++  PK             I  IQ+DT T I +P ++  P        HN   A+ EI   ++QR   +
Sbjct:   51 VEVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEDPIFVVTGRLEDVNEAKREIDCAAEHFTQIRASRRHTQVVP---------GAHAPGQITSYVRVPLRVVGLVVGPKGAT----------IKRIQQDTHTYIITPSREREPVFEVTGLPHNVEAARKEIETHIFQRTGNL 208

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Celegans
Match: mex-3 (Muscle EXcess [Source:UniProtKB/TrEMBL;Acc:V6CKQ3])

HSP 1 Score: 59.3066 bits (142), Expect = 3.354e-9
Identity = 56/177 (31.64%), Postives = 75/177 (42.37%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEIT-INRQRENNQKVSLLMNISNRFGTVKPYNAISSLR-PILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP-------SHNNCKAKFEI--LVYQRNNTI 894
            V VPT EHV+EIVG+QG KIK +R KT   I TP   ED +F++           R I   A   T I   R + Q            G   P    S +R P+   G++  PK             I  IQ+DT T I +P ++  P        HN   A+ EI   ++QR   +
Sbjct:   82 VEVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEDPIFVVTGRLEDVNEAKREIDCAAEHFTQIRASRRHTQ------------GAHAPGQITSYVRVPLRVVGLVVGPKGAT----------IKRIQQDTHTYIITPSREREPVFEVTGLPHNVEAARKEIETHIFQRTGNL 236

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Fly
Match: CG11360 (gene:FBgn0039920 transcript:FBtr0310539)

HSP 1 Score: 56.6102 bits (135), Expect = 4.531e-8
Identity = 56/191 (29.32%), Postives = 89/191 (46.60%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQR----ENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAM 957
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VF++           R I   A+  ++ R       ++Q   ++ + ++  G   P  +     P   T  + VP  +VG ++G  G+ I  IQ++T T I +P ++  P        FE+     N  +D           KQ+ AH+A+
Sbjct:  127 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVNKAKREILSAADHFSLIRASRKPVSDSQNNGMVGSTTSSGGGAVPRMSGPPCMPGQVTIQVRVPYRVVGLVVGPKGATIKHIQQETQTYIVTPSREKEP-------IFEVTGLPDN--VDTAR--------KQIEAHIAL 300

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Fly
Match: CG11360 (gene:FBgn0039920 transcript:FBtr0310540)

HSP 1 Score: 56.6102 bits (135), Expect = 4.531e-8
Identity = 56/191 (29.32%), Postives = 89/191 (46.60%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQR----ENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAM 957
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VF++           R I   A+  ++ R       ++Q   ++ + ++  G   P  +     P   T  + VP  +VG ++G  G+ I  IQ++T T I +P ++  P        FE+     N  +D           KQ+ AH+A+
Sbjct:  127 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVNKAKREILSAADHFSLIRASRKPVSDSQNNGMVGSTTSSGGGAVPRMSGPPCMPGQVTIQVRVPYRVVGLVVGPKGATIKHIQQETQTYIVTPSREKEP-------IFEVTGLPDN--VDTAR--------KQIEAHIAL 300

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Fly
Match: CG11360 (gene:FBgn0039920 transcript:FBtr0310541)

HSP 1 Score: 56.6102 bits (135), Expect = 4.531e-8
Identity = 56/191 (29.32%), Postives = 89/191 (46.60%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQR----ENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAM 957
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VF++           R I   A+  ++ R       ++Q   ++ + ++  G   P  +     P   T  + VP  +VG ++G  G+ I  IQ++T T I +P ++  P        FE+     N  +D           KQ+ AH+A+
Sbjct:  127 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVNKAKREILSAADHFSLIRASRKPVSDSQNNGMVGSTTSSGGGAVPRMSGPPCMPGQVTIQVRVPYRVVGLVVGPKGATIKHIQQETQTYIVTPSREKEP-------IFEVTGLPDN--VDTAR--------KQIEAHIAL 300

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Fly
Match: CG11360 (gene:FBgn0039920 transcript:FBtr0089091)

HSP 1 Score: 56.6102 bits (135), Expect = 4.531e-8
Identity = 56/191 (29.32%), Postives = 89/191 (46.60%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQR----ENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAM 957
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VF++           R I   A+  ++ R       ++Q   ++ + ++  G   P  +     P   T  + VP  +VG ++G  G+ I  IQ++T T I +P ++  P        FE+     N  +D           KQ+ AH+A+
Sbjct:  127 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVNKAKREILSAADHFSLIRASRKPVSDSQNNGMVGSTTSSGGGAVPRMSGPPCMPGQVTIQVRVPYRVVGLVVGPKGATIKHIQQETQTYIVTPSREKEP-------IFEVTGLPDN--VDTAR--------KQIEAHIAL 300

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Zebrafish
Match: FO082781.1 (mex-3 RNA binding family member A [Source:NCBI gene;Acc:100332760])

HSP 1 Score: 57.3806 bits (137), Expect = 2.699e-8
Identity = 51/148 (34.46%), Postives = 72/148 (48.65%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQR--ENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VF              LI  R  ++ + R+      +  S+L    N+F    P     +  P   T  + VP  +VG ++G  GS I  IQ+ T T I +P +D +P
Sbjct:  122 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF--------------LITGRKEDVALARREIISAAEHFSMLRASRNKFSGSPP-----APLPGQTTIQVRVPYRVVGLVVGPKGSTIKRIQQQTCTYIVTPSRDRDP 250

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Zebrafish
Match: mex3b (mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628])

HSP 1 Score: 53.9138 bits (128), Expect = 3.706e-7
Identity = 60/187 (32.09%), Postives = 86/187 (45.99%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAM 957
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VF++           R I   A   ++ R    N+  SL  N +       P N      P   T  + VP  +VG ++G  G+ I  IQ+ T T I +P +D  P        FE+          + E V R +  +++ AH+AM
Sbjct:   62 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRREDVAMARREIISAAEHFSMIRA-SRNKNSSLNGNAT----VPGPPNL-----PGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEP-------VFEV--------TGMPENVDRAR--EEIEAHIAM 221

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Xenopus
Match: MEX3B (mex-3 RNA binding family member B [Source:NCBI gene;Acc:100490923])

HSP 1 Score: 57.3806 bits (137), Expect = 4.811e-8
Identity = 50/146 (34.25%), Postives = 68/146 (46.58%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VF++           R I   A   ++ R   N    +L     N      P N      P   T  + VP  +VG ++G  G+ I  IQ+ T T I +P +D  P
Sbjct:   63 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMIRASRNKNAAAL-----NGGSVPAPPNL-----PGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEP 198

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Xenopus
Match: mex3d (mex-3 RNA binding family member D [Source:NCBI gene;Acc:100144717])

HSP 1 Score: 55.8398 bits (133), Expect = 1.592e-7
Identity = 47/147 (31.97%), Postives = 64/147 (43.54%), Query Frame = 1

Query:  394 GVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834
            GV VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ +FI+           R I   A   +I R   N  K S +   +    ++     I    P    G++  PK             I  IQ+ T T I +P +D  P
Sbjct:  239 GVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPIRGEEPIFIVTGRKEDVEMAKREILAAAEHFSIIRATRN--KASGIPGATQSPPSLPGQTTIQVRVPYRVVGLVVGPKGAT----------IKKIQQSTHTYIVTPSRDKEP 373

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Xenopus
Match: mex3d (mex-3 RNA binding family member D [Source:NCBI gene;Acc:100144717])

HSP 1 Score: 55.0694 bits (131), Expect = 2.315e-7
Identity = 47/147 (31.97%), Postives = 64/147 (43.54%), Query Frame = 1

Query:  394 GVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834
            GV VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ +FI+           R I   A   +I R   N  K S +   +    ++     I    P    G++  PK             I  IQ+ T T I +P +D  P
Sbjct:  239 GVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPIRGEEPIFIVTGRKEDVEMAKREILAAAEHFSIIRATRN--KASGIPGATQSPPSLPGQTTIQVRVPYRVVGLVVGPKGAT----------IKKIQQSTHTYIVTPSRDKEP 373

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Xenopus
Match: atp6ap2 (ATPase, H+ transporting, lysosomal accessory protein 2 [Source:Xenbase;Acc:XB-GENE-964301])

HSP 1 Score: 54.6842 bits (130), Expect = 3.290e-7
Identity = 48/146 (32.88%), Postives = 69/146 (47.26%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VF++           R I   A   ++ R   N    ++        G V+     +   P   T  + VP  +VG ++G  G+ I  IQ+ T T I +P +D  P
Sbjct:   80 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMAKREILSAAEHFSMIRASRNKNAPAV--------GNVQ----CAPNLPGQTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEP 213

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Mouse
Match: Mex3a (mex3 RNA binding family member A [Source:MGI Symbol;Acc:MGI:1919890])

HSP 1 Score: 57.7658 bits (138), Expect = 2.625e-8
Identity = 49/146 (33.56%), Postives = 69/146 (47.26%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834
            V VPT EHV+EIVG+QG KIK +R KT   I TP   E+ VF++        T  R I   A   ++ R   N    +        FG         ++R       + VP  +VG ++G  G+ I  IQ+ T T I +P +D +P
Sbjct:  136 VPVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFMVTGRREDVATARREIISAAEHFSMIRASRNKSGAA--------FGVAPALPGQVTIR-------VRVPYRVVGLVVGPKGATIKRIQQQTNTYIITPSRDRDP 266

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Mouse
Match: Mex3d (mex3 RNA binding family member D [Source:MGI Symbol;Acc:MGI:2681847])

HSP 1 Score: 53.9138 bits (128), Expect = 4.195e-7
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VFI+
Sbjct:  238 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 281

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Mouse
Match: Mex3b (mex3 RNA binding family member B [Source:MGI Symbol;Acc:MGI:1918252])

HSP 1 Score: 52.7582 bits (125), Expect = 9.562e-7
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VF++
Sbjct:   77 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVV 120

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Mouse
Match: Mex3c (mex3 RNA binding family member C [Source:MGI Symbol;Acc:MGI:2652843])

HSP 1 Score: 52.7582 bits (125), Expect = 1.023e-6
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ +F++
Sbjct:  229 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVV 272

[Close]

BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Match: sp|A1L3F4|MEX3B_XENLA (RNA-binding protein MEX3B OS=Xenopus laevis OX=8355 GN=mex3b PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.032e-7
Identity = 50/146 (34.25%), Postives = 69/146 (47.26%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834
            V+VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VF++           R I   A   ++ R   N    +L     N      P N      P   T  + VP  +VG ++G  G+ I  IQ+ T T I +P +D  P
Sbjct:   63 VQVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVALARREIISAAEHFSMIRASRNKNAAAL-----NGGSVPAPPNL-----PGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEP 198

[Close]

BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Match: sp|A1L020|MEX3A_HUMAN (RNA-binding protein MEX3A OS=Homo sapiens OX=9606 GN=MEX3A PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.241e-7
Identity = 49/146 (33.56%), Postives = 69/146 (47.26%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834
            V VPT EHV+EIVG+QG KIK +R KT   I TP   E+ VF++        T  R I   A   ++ R   N    +        FG         ++R       + VP  +VG ++G  G+ I  IQ+ T T I +P +D +P
Sbjct:  136 VPVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFMVTGRREDVATARREIISAAEHFSMIRASRNKSGAA--------FGVAPALPGQVTIR-------VRVPYRVVGLVVGPKGATIKRIQQQTNTYIITPSRDRDP 266

[Close]

BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Match: sp|Q86XN8|MEX3D_HUMAN (RNA-binding protein MEX3D OS=Homo sapiens OX=9606 GN=MEX3D PE=1 SV=3)

HSP 1 Score: 53.9138 bits (128), Expect = 3.404e-6
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VFI+
Sbjct:  183 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 226

[Close]

BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Match: sp|Q3UE17|MEX3D_MOUSE (RNA-binding protein MEX3D OS=Mus musculus OX=10090 GN=Mex3d PE=1 SV=2)

HSP 1 Score: 53.5286 bits (127), Expect = 3.920e-6
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VFI+
Sbjct:  164 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 207

[Close]

BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Match: sp|Q6ZN04|MEX3B_HUMAN (RNA-binding protein MEX3B OS=Homo sapiens OX=9606 GN=MEX3B PE=1 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 5.493e-6
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1

Query:  343 SLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528
            SLY  E      N  +  V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VF++
Sbjct:   53 SLYDSEPRKKSVNMTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVV 113

[Close]

BLAST of RNA binding protein MEX3B vs. TrEMBL
Match: A0A0R3SVM1 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS9634 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.670e-50
Identity = 162/446 (36.32%), Postives = 222/446 (49.78%), Query Frame = 1

Query:  223 YIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITIN------RQRENNQKVSLLMNISNRFGTVK------------------PYNAISSLRPILATGI---------------------------------------IEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKD--NNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRIXXXXXXXXXXHSDYKIYDPSAMSSIDRYEELPAQSVSLSSYKQINPYKV-----NGFEISQFPS 1350
            YI  A++ GFIVG ELE++K  SRRS        IS+ F++ YG+     + +Y Q+GVRVPTK+HVSEIVGK G KIK IRE+TGALI TPGE+EDHVFIIEA P IAL VA LI +RA EIT +      R+R +   +    ++ N  G                     P   I S  P+L + +                                       I VP+++VG+IIGT GSIITTIQKDTGTEI+SPPK+    PS     ++FEI  YQ    + VQ+A  R++ AKQLI H+ M Q ER  +EE   +N    S +    N    D +  +  +   N     ++W+W D+ +++ + A +V+ RIL E                 + S   R +EL A + S +     +P  +     N F I  FP+
Sbjct:  178 YINYARSKGFIVGQELEHIKENSRRSTSHTYG-RISVYFRNRYGETEAKTKASYLQLGVRVPTKDHVSEIVGKGGQKIKLIREETGALITTPGENEDHVFIIEAPPEIALKVAELIANRALEITQSKANASERRRGSTNSIPGCASLFNGNGITSATTINGGQRLISRSPDDLPNATIPSPSPLLKSPLTNGGNYSNENGFFSSNGNGLSNGGSNNSGTTRTLLARSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPS---ATSEFEISAYQSQG-MTVQDAEARVQQAKQLIGHLVMRQFERRYSEELDDNNTGNGSSAKSRNNSNGEDFDGNSGGKTTTNNTTSGVAWMWPDVQQMDAKEAQDVLDRILAE-----------------SKSKTRRVKELQAAAASTTGSLPASPCGLVSGGNNSFAIEFFPT 601

[Close]

BLAST of RNA binding protein MEX3B vs. TrEMBL
Match: A0A0R3UGA8 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS6241 PE=4 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.914e-48
Identity = 145/375 (38.67%), Postives = 191/375 (50.93%), Query Frame = 1

Query:  223 YIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITIN------RQRENNQKVSLLM----------------NISNRFGTVKPYNAISSLRPILATGI----------------------------------IEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKD--NNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRI 1173
            Y   AQ  G+IVG ELE +K  SRRS        IS +F++ YG+     + +Y Q+GVRVP+K+HVSEIVGK G KIK IRE+TGALI TPGE EDHVFIIEA P IAL VA LI  RA EIT +      R+R +   +   M                 + NR     P  ++ S  P+L T +                                  I VP+++VG+IIGT GSIITTIQKDTGTEI+SPPK+    PS     ++FEI  YQ       Q A  R++ AKQLI H+ M Q ER  +EE        +      K    S G+   +     +   +++ W+W D+ +++   A EV+ RI
Sbjct:  218 YNSMAQKRGYIVGAELERIKENSRRSTSHTY-GRISAHFRNRYGETEAKTKASYMQLGVRVPSKDHVSEIVGKGGQKIKLIREETGALITTPGEYEDHVFIIEAPPEIALHVAELISTRAQEITQSKMSASERRRGSTSSIPGCMALFSMNSINGSAPSNGRLMNRSPDDLPTGSLPSPAPLLKTNVNSGSDAATFAFSNGLSSGNNVGGSSGRILLARSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPS---ATSEFEISAYQSLGMTSNQAAECRVQQAKQLIGHLVMRQFERRASEE------LDEGGGCSGKPRANSTGDDCDENGSASSRNSKTVGWMWPDVAQMDSTEAREVLDRI 582

[Close]

BLAST of RNA binding protein MEX3B vs. TrEMBL
Match: A0A0R3T6J8 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS2685 PE=4 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.285e-33
Identity = 75/124 (60.48%), Postives = 91/124 (73.39%), Query Frame = 1

Query:  223 YIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEIT 594
            YI  A++ GFIVG ELE++K  SRRS        IS +F++ YG+     + +Y Q+GVRVPTK+HVSEIVGK G KIK IRE+TGALI TPGE+EDHVFIIEA P IAL VA LI +RA EI+
Sbjct:  180 YINYARSKGFIVGQELEHIKENSRRSTSHTYG-RISAHFRNRYGETEAKTKASYLQLGVRVPTKDHVSEIVGKGGQKIKLIREETGALITTPGENEDHVFIIEAPPEIALKVADLITNRAQEIS 302

HSP 2 Score: 78.9518 bits (193), Expect = 1.647e-11
Identity = 62/164 (37.80%), Postives = 95/164 (57.93%), Query Frame = 1

Query:  688 SLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKD--NNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRI 1173
            + R +L+   I VP+++VG+IIGT GSIITTIQKDTGTEI+SPPK+    PS     ++FEI  YQ    +  Q+A  R++ AKQLI H+ M Q ER  +EE   +N    S      N    + +  ++ +         ++W+W D+ +++ + A +V+ RI
Sbjct:  398 TTRTLLSRSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPS---ATSEFEISAYQSQG-MTAQDAEARVQQAKQLIGHLVMRQFERRYSEELEDNNTGNGSSGKSRNNSNGEESDRNSNGKTATTNVSNGVAWMWPDVQQMDAKEAQDVLDRI 557

[Close]

BLAST of RNA binding protein MEX3B vs. TrEMBL
Match: A0A068XYZ9 (RNA binding protein MEX3B OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000495700 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.803e-32
Identity = 83/186 (44.62%), Postives = 108/186 (58.06%), Query Frame = 1

Query:  166 WQEVNVDYDKKSVDFTYSD---YIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITIN------RQRENNQKVSLLMNISNRFGTVKPYNAISSLR 696
            W  +N   + ++      D   Y   AQ  G+IVG ELE +K  SRRS        IS +F++ YG+     + +Y Q+GVRVP+K+HVSEIVGK G KIK IRE+TGALI TPGE EDHVFIIEA P IAL VA LI  RA EIT +      R+R +   +   M++ +  G+V   +     R
Sbjct:  184 WSAINTAANSQACGLFMQDRLFYNSVAQKRGYIVGPELERIKENSRRSTSHTY-GRISAHFRNRYGETEAKTKASYMQLGVRVPSKDHVSEIVGKGGQKIKLIREETGALITTPGEYEDHVFIIEAPPEIALHVAELISTRAQEITQSKMSASERRRGSTSSIPGCMSLFSVNGSVGASSGTGGGR 368

HSP 2 Score: 82.0333 bits (201), Expect = 1.835e-12
Identity = 67/162 (41.36%), Postives = 93/162 (57.41%), Query Frame = 1

Query:  694 RPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKD--NNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRI 1173
            R +LA   I VP+++VG+IIGT GSIITTIQKDTGTEI+SPPK+    PS     ++FEI  YQ       Q A  R++ AKQLI H+ M Q ER  +EE       L+   +   N   S  N   D E   +   ++++W+W D+ +++   A EV+ RI
Sbjct:  445 RILLARSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPS---ATSEFEISAYQSLGMTSNQAAECRVQQAKQLIGHLVMRQFERRASEE-------LEDGPAGSSNAGKSRSNSAGD-EAEESKTSKTVAWMWPDVAQMDSDEAREVLDRI 595

[Close]

BLAST of RNA binding protein MEX3B vs. TrEMBL
Match: U6J6B3 (RNA-binding protein MEX3B OS=Echinococcus granulosus OX=6210 GN=EGR_08517 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.599e-32
Identity = 83/186 (44.62%), Postives = 108/186 (58.06%), Query Frame = 1

Query:  166 WQEVNVDYDKKSVDFTYSD---YIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITIN------RQRENNQKVSLLMNISNRFGTVKPYNAISSLR 696
            W  +N   + ++      D   Y   AQ  G+IVG ELE +K  SRRS        IS +F++ YG+     + +Y Q+GVRVP+K+HVSEIVGK G KIK IRE+TGALI TPGE EDHVFIIEA P IAL VA LI  RA EIT +      R+R +   +   M++ +  G+V   +     R
Sbjct:  184 WSAINTAANSQASGLFMQDRLFYNSVAQKRGYIVGPELERIKENSRRSTSHTY-GRISAHFRNRYGETEAKTKASYMQLGVRVPSKDHVSEIVGKGGQKIKLIREETGALITTPGEYEDHVFIIEAPPEIALHVAELISTRAQEITQSKMSASERRRGSTSSIPGCMSLFSVNGSVGASSGTGGGR 368

HSP 2 Score: 82.0333 bits (201), Expect = 1.792e-12
Identity = 67/162 (41.36%), Postives = 93/162 (57.41%), Query Frame = 1

Query:  694 RPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKD--NNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRI 1173
            R +LA   I VP+++VG+IIGT GSIITTIQKDTGTEI+SPPK+    PS     ++FEI  YQ       Q A  R++ AKQLI H+ M Q ER  +EE       L+   +   N   S  N   D E   +   ++++W+W D+ +++   A EV+ RI
Sbjct:  445 RILLARSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPS---ATSEFEISAYQSLGMTSNQAAECRVQQAKQLIGHLVMRQFERRASEE-------LEDGPAGSSNAGKSRSNSAGD-EAEESKTSKTVAWMWPDVAQMDSDEAREVLDRI 595

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Cavefish
Match: ENSAMXT00000025356.2 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000037.1:51923:60658:1 gene:ENSAMXG00000024633.2 transcript:ENSAMXT00000025356.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 56.6102 bits (135), Expect = 4.782e-8
Identity = 52/150 (34.67%), Postives = 74/150 (49.33%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQR--ENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIE--VPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VF              LI  R  ++ + R+      +  S+L    N+ G    +N  S   P+     I+  VP  +VG ++G  GS I  IQ+ T T I +P +D +P
Sbjct:  113 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF--------------LITGRKEDVALARREIISAAEHFSMLRASRNKLGVS--FNG-SPPTPLPGQTTIQVRVPYRVVGLVVGPKGSTIKRIQQQTCTYIVTPSRDRDP 245

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Cavefish
Match: MEX3D (mex-3 RNA binding family member D [Source:HGNC Symbol;Acc:HGNC:16734])

HSP 1 Score: 53.5286 bits (127), Expect = 4.163e-7
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VFI+
Sbjct:   45 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 88

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Cavefish
Match: mex3b (mex-3 RNA binding family member B [Source:NCBI gene;Acc:103046405])

HSP 1 Score: 53.5286 bits (127), Expect = 4.429e-7
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEA 534
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VF++  
Sbjct:   62 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTG 107

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Nematostella
Match: EDO32414 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SV60])

HSP 1 Score: 58.5362 bits (140), Expect = 6.244e-10
Identity = 59/179 (32.96%), Postives = 83/179 (46.37%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEIT-INRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP-------SHNNCKAKFEILVYQRNNTIDVQEA 909
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   ED VF++           R I   A   + I  QR+NN   SL     +     +            +T ++ VP  +VG ++G  G+ I  IQ+ T T I +P +D  P         N   A+ EIL +  N T  + +A
Sbjct:   10 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEDPVFVVTGRKEDVTLAKREIISAAEHFSQIRAQRKNNSLNSLAPGPPSPSVPGQ------------STILVRVPYRVVGLVVGPKGATIKRIQQQTNTYIVTPSRDKEPVFEVTGSGENVESARNEILNHISNRTGGLLDA 176

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Medaka
Match: ENSORLT00000028704.1 (mex-3 RNA binding family member A [Source:NCBI gene;Acc:111948930])

HSP 1 Score: 60.4622 bits (145), Expect = 2.815e-9
Identity = 58/181 (32.04%), Postives = 88/181 (48.62%), Query Frame = 1

Query:  298 SLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQR--ENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834
            +++Q  S   ++ ++S  G E  G   N  +  V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VF              LI  R  ++ + R+      +  S+L    N+ G     +  + L P   T  + VP  +VG ++G  GS I  IQ+ T T I +P +D +P
Sbjct:  145 AILQGKSKLCAL-YESGSGGETKGRGCNITEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVF--------------LITGRKEDVALARREIISAAEHFSMLRASRNKLGVSFSGSPPTPL-PGQTTIQVRVPYRVVGLVVGPKGSTIKRIQQQTCTYIVTPSRDRDP 308

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Medaka
Match: ENSORLT00000006291.2 (RNA-binding protein MEX3B [Source:NCBI gene;Acc:101170521])

HSP 1 Score: 55.4546 bits (132), Expect = 1.112e-7
Identity = 46/147 (31.29%), Postives = 64/147 (43.54%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLR-PILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNP 834
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E  VF++           R I   A   ++ R   N  K   L++++       P      +R P    G++  PK             I  IQ+ T T I +P +D  P
Sbjct:  199 VAVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEQPVFVVTGRKEDVAMAKREILSAAEHFSLIRASRN--KTGPLLSVTALGTPTLPGQTTIQVRVPYRVVGLVVGPKGAT----------IKRIQQQTHTYIVTPSRDKEP 333

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Medaka
Match: MEX3D (mex-3 RNA binding family member D [Source:NCBI gene;Acc:101171527])

HSP 1 Score: 52.7582 bits (125), Expect = 7.205e-7
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VFI+
Sbjct:  152 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 195

[Close]

BLAST of RNA binding protein MEX3B vs. Ensembl Medaka
Match: MEX3D (mex-3 RNA binding family member D [Source:NCBI gene;Acc:101171527])

HSP 1 Score: 52.7582 bits (125), Expect = 7.850e-7
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1

Query:  397 VRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFII 528
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VFI+
Sbjct:  152 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 195

[Close]

BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Match: SMESG000071674.1 (SMESG000071674.1)

HSP 1 Score: 906.36 bits (2341), Expect = 0.000e+0
Identity = 467/469 (99.57%), Postives = 467/469 (99.57%), Query Frame = 1

Query:   70 MPTDIMKETDRIRFPSNINDGLNQKFLEIKSIWQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRIXXXXXXXXXXHSDYKIYDPSAMSSIDRYEELPAQSVSLSSYKQINPYKVNGFEISQFPSTIYNENTPILKTSTSPISLNSSRIVENSNNQFSLTNNYHGRC 1476
            MPTDIMKETDRIRF SNINDGLNQKFLEIKSIWQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVGRIIGTHGSIITTIQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRILEESKKKSKLHSDYKIYDPSAMSSIDRYEELPAQSVSLSSYKQIN YKVNGFEISQFPSTIYNENTPILKTSTSPISLNSSRIVENSNNQFSLTNNYHGRC
Sbjct:    1 MPTDIMKETDRIRFTSNINDGLNQKFLEIKSIWQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVGRIIGTHGSIITTIQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRILEESKKKSKLHSDYKIYDPSAMSSIDRYEELPAQSVSLSSYKQINSYKVNGFEISQFPSTIYNENTPILKTSTSPISLNSSRIVENSNNQFSLTNNYHGRC 469

[Close]

BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Match: SMESG000071674.1 (SMESG000071674.1)

HSP 1 Score: 894.419 bits (2310), Expect = 0.000e+0
Identity = 462/464 (99.57%), Postives = 462/464 (99.57%), Query Frame = 1

Query:   85 MKETDRIRFPSNINDGLNQKFLEIKSIWQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRIXXXXXXXXXXHSDYKIYDPSAMSSIDRYEELPAQSVSLSSYKQINPYKVNGFEISQFPSTIYNENTPILKTSTSPISLNSSRIVENSNNQFSLTNNYHGRC 1476
            MKETDRIRF SNINDGLNQKFLEIKSIWQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVGRIIGTHGSIITTIQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRILEESKKKSKLHSDYKIYDPSAMSSIDRYEELPAQSVSLSSYKQIN YKVNGFEISQFPSTIYNENTPILKTSTSPISLNSSRIVENSNNQFSLTNNYHGRC
Sbjct:    1 MKETDRIRFTSNINDGLNQKFLEIKSIWQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVGRIIGTHGSIITTIQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRILEESKKKSKLHSDYKIYDPSAMSSIDRYEELPAQSVSLSSYKQINSYKVNGFEISQFPSTIYNENTPILKTSTSPISLNSSRIVENSNNQFSLTNNYHGRC 464

[Close]

BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Match: SMESG000062702.1 (SMESG000062702.1)

HSP 1 Score: 306.99 bits (785), Expect = 4.765e-95
Identity = 209/410 (50.98%), Postives = 272/410 (66.34%), Query Frame = 1

Query:  130 GLNQKFLEIKSI--WQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSL-----RPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKD-NNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSI--------SSWEKNLPA-----SDGN------VFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRIXXXXXXXXXXHSDYKIYDPS--AMSSIDRYEELPA 1272
            G+N+ F +  S   W    VD + K  DF       EAQ  GFIVG ELENVKAKS RS++Q   + I   F+  YG+ ++  ++ Y Q+GVRVP+KEHVSEIVGKQG KIK+IREKTGALI TPGE EDHVFIIEA P  AL VA+++K+RA +IT++R +E+ ++ S  +  +NR     P  A S +     + +LA+G I+VPK IVGRIIGT GSIITTIQ+DTGTEIRSPPK+   P   N  A FEILVYQ  N  D+ EA QR+ NAKQLIAHVAMHQ+E+IRAEE+P+SNY+++S         SS E NL       +D N      +  +++KLL  QM+   W+W+D+++LED +A EVV RILEESKKK+K  S+  IYD +   + ++D  E  P 
Sbjct:  127 GINRGFSDPTSQTQWSHDLVD-ENKVRDFC----ALEAQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRRSSCPITNNNRPSNRSP--AASGITQAGSKVVLASGRIQVPKIIVGRIIGTQGSIITTIQRDTGTEIRSPPKEIGKPK--NSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEESKKKTKTRSEPSIYDDNTKGLFTLDETESFPT 527

[Close]

BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Match: SMESG000062702.1 (SMESG000062702.1)

HSP 1 Score: 306.99 bits (785), Expect = 6.024e-95
Identity = 209/410 (50.98%), Postives = 272/410 (66.34%), Query Frame = 1

Query:  130 GLNQKFLEIKSI--WQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSL-----RPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKD-NNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSI--------SSWEKNLPA-----SDGN------VFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRIXXXXXXXXXXHSDYKIYDPS--AMSSIDRYEELPA 1272
            G+N+ F +  S   W    VD + K  DF       EAQ  GFIVG ELENVKAKS RS++Q   + I   F+  YG+ ++  ++ Y Q+GVRVP+KEHVSEIVGKQG KIK+IREKTGALI TPGE EDHVFIIEA P  AL VA+++K+RA +IT++R +E+ ++ S  +  +NR     P  A S +     + +LA+G I+VPK IVGRIIGT GSIITTIQ+DTGTEIRSPPK+   P   N  A FEILVYQ  N  D+ EA QR+ NAKQLIAHVAMHQ+E+IRAEE+P+SNY+++S         SS E NL       +D N      +  +++KLL  QM+   W+W+D+++LED +A EVV RILEESKKK+K  S+  IYD +   + ++D  E  P 
Sbjct:  143 GINRGFSDPTSQTQWSHDLVD-ENKVRDFC----ALEAQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRRSSCPITNNNRPSNRSP--AASGITQAGSKVVLASGRIQVPKIIVGRIIGTQGSIITTIQRDTGTEIRSPPKEIGKP--KNSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEESKKKTKTRSEPSIYDDNTKGLFTLDETESFPT 543

[Close]

BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Match: SMESG000025422.1 (SMESG000025422.1)

HSP 1 Score: 169.088 bits (427), Expect = 1.475e-44
Identity = 127/320 (39.69%), Postives = 182/320 (56.88%), Query Frame = 1

Query:  220 DYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQ-NYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSLRPILATGIIEVPKNIVXXXXXXXXXXXXXXQKDTGTEIRSPPKDNNPSHNNCKAKFEILVYQRNNTIDVQE-AVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRI 1173
            +Y   A   GF+VG +L+ V  +S  ++    S+ IS  F+  +G   + + Q  Y  +GVRVP+KEHVSEIVGK+G KIK IR+ TGALI TP E EDHVF+IEA+P  A+ V ++I+  A++IT N+          L NI+   G       +   R  LAT  I VP+ +VG++IGT GSIITT+QK+TGTEI+SPPKD   +  +  A FEI VY+ N T++ +E A  +I  AKQLIAH+ M   ++     +P S+                +GN   +          S  W+W ++ R++D  A E++ RI
Sbjct:  190 EYQSMASKMGFLVGQDLDEVLNRSA-TMKNSNSSRISNFFKHKHGSSGSHLTQKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQITRNK----------LGNIAGLMGERPRSPPMLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDT-ADFEISVYE-NGTVNSEETAWLQIHRAKQLIAHLVMRVWDQQPRNSTPSSD----------------EGNCTPN--------TCSPEWIWPEVSRMDDGDAKEIIDRI 472

The following BLAST results are available for this feature:

BLAST of RNA binding protein MEX3B vs. Ensembl Human
BLAST of RNA binding protein MEX3B vs. Ensembl Celegans
BLAST of RNA binding protein MEX3B vs. Ensembl Fly
BLAST of RNA binding protein MEX3B vs. Ensembl Zebrafish
BLAST of RNA binding protein MEX3B vs. Ensembl Xenopus
BLAST of RNA binding protein MEX3B vs. Ensembl Mouse
BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
BLAST of RNA binding protein MEX3B vs. TrEMBL
BLAST of RNA binding protein MEX3B vs. Ensembl Cavefish
BLAST of RNA binding protein MEX3B vs. Ensembl Sea Lamprey
BLAST of RNA binding protein MEX3B vs. Ensembl Yeast
BLAST of RNA binding protein MEX3B vs. Ensembl Nematostella
BLAST of RNA binding protein MEX3B vs. Ensembl Medaka
BLAST of RNA binding protein MEX3B vs. Planmine SMEST

BLAST of RNA binding protein MEX3B vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
MEX3A	2.584e-8	33.56	mex-3 RNA binding family member A [Source:HGNC Sym...	[more]
MEX3C	5.110e-7	32.88	mex-3 RNA binding family member C [Source:HGNC Sym...	[more]
MEX3D	6.417e-7	56.82	mex-3 RNA binding family member D [Source:HGNC Sym...	[more]
MEX3D	7.088e-7	56.82	mex-3 RNA binding family member D [Source:HGNC Sym...	[more]
MEX3B	1.144e-6	46.77	mex-3 RNA binding family member B [Source:HGNC Sym...	[more]

BLAST of RNA binding protein MEX3B vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2


Match Name	E-value	Identity	Description
mex-3	1.410e-9	32.20	Muscle EXcess [Source:UniProtKB/TrEMBL;Acc:V6CKQ3...	[more]
mex-3	3.354e-9	31.64	Muscle EXcess [Source:UniProtKB/TrEMBL;Acc:V6CKQ3...	[more]

BLAST of RNA binding protein MEX3B vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4


Match Name	E-value	Identity	Description
CG11360	4.531e-8	29.32	gene:FBgn0039920 transcript:FBtr0310539	[more]
CG11360	4.531e-8	29.32	gene:FBgn0039920 transcript:FBtr0310540	[more]
CG11360	4.531e-8	29.32	gene:FBgn0039920 transcript:FBtr0310541	[more]
CG11360	4.531e-8	29.32	gene:FBgn0039920 transcript:FBtr0089091	[more]

BLAST of RNA binding protein MEX3B vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2


Match Name	E-value	Identity	Description
FO082781.1	2.699e-8	34.46	mex-3 RNA binding family member A [Source:NCBI gen...	[more]
mex3b	3.706e-7	32.09	mex-3 RNA binding family member B [Source:ZFIN;Acc...	[more]

BLAST of RNA binding protein MEX3B vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4


Match Name	E-value	Identity	Description
MEX3B	4.811e-8	34.25	mex-3 RNA binding family member B [Source:NCBI gen...	[more]
mex3d	1.592e-7	31.97	mex-3 RNA binding family member D [Source:NCBI gen...	[more]
mex3d	2.315e-7	31.97	mex-3 RNA binding family member D [Source:NCBI gen...	[more]
atp6ap2	3.290e-7	32.88	ATPase, H+ transporting, lysosomal accessory prote...	[more]

BLAST of RNA binding protein MEX3B vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Mex3a	2.625e-8	33.56	mex3 RNA binding family member A [Source:MGI Symbo...	[more]
Mex3d	4.195e-7	56.82	mex3 RNA binding family member D [Source:MGI Symbo...	[more]
Mex3b	9.562e-7	54.55	mex3 RNA binding family member B [Source:MGI Symbo...	[more]
Mex3c	1.023e-6	52.27	mex3 RNA binding family member C [Source:MGI Symbo...	[more]

BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|A1L3F4\|MEX3B_XENLA	1.032e-7	34.25	RNA-binding protein MEX3B OS=Xenopus laevis OX=835...	[more]
sp\|A1L020\|MEX3A_HUMAN	1.241e-7	33.56	RNA-binding protein MEX3A OS=Homo sapiens OX=9606 ...	[more]
sp\|Q86XN8\|MEX3D_HUMAN	3.404e-6	56.82	RNA-binding protein MEX3D OS=Homo sapiens OX=9606 ...	[more]
sp\|Q3UE17\|MEX3D_MOUSE	3.920e-6	56.82	RNA-binding protein MEX3D OS=Mus musculus OX=10090...	[more]
sp\|Q6ZN04\|MEX3B_HUMAN	5.493e-6	46.77	RNA-binding protein MEX3B OS=Homo sapiens OX=9606 ...	[more]

BLAST of RNA binding protein MEX3B vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0R3SVM1	2.670e-50	36.32	Uncharacterized protein OS=Hymenolepis diminuta OX...	[more]
A0A0R3UGA8	5.914e-48	38.67	Uncharacterized protein OS=Mesocestoides corti OX=...	[more]
A0A0R3T6J8	7.285e-33	60.48	Uncharacterized protein OS=Rodentolepis nana OX=10...	[more]
A0A068XYZ9	1.803e-32	44.62	RNA binding protein MEX3B OS=Echinococcus multiloc...	[more]
U6J6B3	4.599e-32	44.62	RNA-binding protein MEX3B OS=Echinococcus granulos...	[more]

BLAST of RNA binding protein MEX3B vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
ENSAMXT00000025356.2	4.782e-8	34.67	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
MEX3D	4.163e-7	56.82	mex-3 RNA binding family member D [Source:HGNC Sym...	[more]
mex3b	4.429e-7	52.17	mex-3 RNA binding family member B [Source:NCBI gen...	[more]

BLAST of RNA binding protein MEX3B vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of RNA binding protein MEX3B vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of RNA binding protein MEX3B vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO32414	6.244e-10	32.96	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of RNA binding protein MEX3B vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4


Match Name	E-value	Identity	Description
ENSORLT00000028704.1	2.815e-9	32.04	mex-3 RNA binding family member A [Source:NCBI gen...	[more]
ENSORLT00000006291.2	1.112e-7	31.29	RNA-binding protein MEX3B [Source:NCBI gene;Acc:10...	[more]
MEX3D	7.205e-7	56.82	mex-3 RNA binding family member D [Source:NCBI gen...	[more]
MEX3D	7.850e-7	56.82	mex-3 RNA binding family member D [Source:NCBI gen...	[more]

BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000071674.1	0.000e+0	99.57	SMESG000071674.1	[more]
SMESG000071674.1	0.000e+0	99.57	SMESG000071674.1	[more]
SMESG000062702.1	4.765e-95	50.98	SMESG000062702.1	[more]
SMESG000062702.1	6.024e-95	50.98	SMESG000062702.1	[more]
SMESG000025422.1	1.475e-44	39.69	SMESG000025422.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30000222 ID=SMED30000222|Name=RNA binding protein MEX3B|organism=Schmidtea mediterranea sexual|type=transcript|length=1670bp
GCCAAATTACTATATATAAGTATTATCTAAACACATCTTTATTTTCTACT
ACAAATTGGTGAGGAAATTATGCCTACTGACATTATGAAAGAAACCGATC
GAATAAGATTTCCAAGCAATATAAATGATGGTTTAAATCAAAAATTCCTC
GAAATTAAAAGCATTTGGCAAGAAGTAAATGTAGACTACGATAAAAAATC
TGTGGATTTCACATATTCTGATTATATCCAAGAAGCCCAAACCGATGGAT
TTATTGTTGGATTGGAATTGGAAAACGTTAAAGCAAAATCTCGTCGGTCA
TTAATGCAACAAATGTCAAATCATATTTCCATTAATTTCCAATCTCTATA
TGGAAAAGAAAACAACGGAGTTCGTCAGAATTACTTTCAAATTGGAGTTC
GAGTTCCTACCAAAGAGCATGTGTCTGAAATCGTTGGAAAACAAGGGTTA
AAAATCAAAGAAATCCGAGAGAAAACTGGTGCGTTAATCATAACTCCTGG
AGAAAGTGAAGATCACGTATTCATTATAGAAGCACTTCCTGGAATCGCCC
TAACAGTTGCGAGGCTAATTAAGGATCGGGCAAATGAAATCACAATAAAC
CGACAAAGGGAAAATAATCAGAAAGTTTCTTTGCTAATGAATATATCCAA
CAGATTCGGCACAGTGAAACCTTACAATGCTATATCATCTCTGAGACCGA
TACTTGCTACTGGAATCATTGAAGTGCCAAAGAATATCGTCGGAAGAATA
ATTGGCACTCACGGCTCCATCATAACGACCATTCAAAAGGATACCGGCAC
TGAGATTCGCAGCCCACCAAAAGACAATAACCCGTCTCACAATAATTGCA
AGGCAAAATTTGAAATTCTCGTTTATCAGAGAAACAACACAATCGATGTT
CAGGAAGCTGTTCAGCGAATAAAAAACGCAAAACAGCTGATTGCCCATGT
TGCTATGCACCAAATGGAACGAATTAGGGCTGAGGAATCGCCGTTCTCGA
ATTATAGATTAAAATCAATTAGTTCTTGGGAGAAAAATCTCCCAGCGTCA
GATGGAAATGTTTTTGCTGATAAAGAGAAACTATTGAACTATCAAATGCA
ATCGATATCTTGGCTATGGACCGACATTGACAGGTTGGAGGATCAAATGG
CGGATGAGGTCGTACTGAGAATCCTAGAGGAATCTAAGAAAAAGTCCAAA
CTGCACTCAGATTACAAAATCTATGATCCAAGTGCCATGAGCAGCATCGA
TCGATATGAGGAATTGCCTGCCCAGTCTGTTTCGTTGAGTTCATACAAAC
AAATAAATCCATACAAAGTGAATGGATTCGAAATATCTCAGTTTCCATCC
ACGATTTATAATGAGAACACACCCATTTTGAAGACATCTACGTCGCCCAT
TTCCTTAAATAGCAGCAGAATAGTGGAAAATTCAAATAATCAATTCTCTC
TGACAAACAATTACCATGGAAGATGCAACAGCAACAGCAATAATAATAAT
AATAATAATCCTGTATTTACACATAAATCAAAATTGTGATGTAATCTGTC
ATTTCTAGAACAATTAACGCATCTGTAACGCGCAACACATGTTAAAATGC
ATTTGACTTTATCAATTTGTACATAGATATCAGAGAATGGACCGTTCTCA
ACTAGACATCCTGTAGTCTT

protein sequence of SMED30000222-orf-1

>SMED30000222-orf-1 ID=SMED30000222-orf-1|Name=SMED30000222-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=490bp
MPTDIMKETDRIRFPSNINDGLNQKFLEIKSIWQEVNVDYDKKSVDFTYS
DYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNG
VRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHV
FIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVK
PYNAISSLRPILATGIIEVPKNIVGRIIGTHGSIITTIQKDTGTEIRSPP
KDNNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQME
RIRAEESPFSNYRLKSISSWEKNLPASDGNVFADKEKLLNYQMQSISWLW
TDIDRLEDQMADEVVLRILEESKKKSKLHSDYKIYDPSAMSSIDRYEELP
AQSVSLSSYKQINPYKVNGFEISQFPSTIYNENTPILKTSTSPISLNSSR
IVENSNNQFSLTNNYHGRCNSNSNNNNNNNPVFTHKSKL*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000017	photoreceptor neuron
PLANA:0000020	protonephridia
PLANA:0000034	epidermis
PLANA:0000101	muscle cell
PLANA:0000140	anterior region of the whole animal
PLANA:0000418	head

Vocabulary: **INTERPRO**
Term	Definition
IPR036612	KH_dom_type_1_sf
IPR004087	KH_dom
IPR004088	KH_dom_type_1

Vocabulary: **molecular function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003723	RNA binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 211..296 e-value: 8.9E-6 score: 35.2 coord: 104..172 e-value: 2.7E-6 score: 36.9
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 110..152 e-value: 1.6E-6 score: 27.8 coord: 217..289 e-value: 6.5E-9 score: 35.5
IPR036612	K Homology domain, type 1 superfamily	GENE3D	G3DSA:3.30.1370.10		coord: 214..294 e-value: 1.3E-10 score: 43.0 coord: 107..178 e-value: 3.9E-7 score: 31.9
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 110..177
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 216..286
None	No IPR available	PANTHER	PTHR23285:SF17	MEX-3 RNA BINDING FAMILY MEMBER A	coord: 79..257
None	No IPR available	PANTHER	PTHR23285	RING FINGER AND KH DOMAIN CONTAINING PROTEIN 1	coord: 79..257
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 212..291 score: 11.678
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 115..167 score: 8.68
None	No IPR available	CDD	cd00105	KH-I	coord: 217..261 e-value: 9.05413E-7 score: 44.0879
None	No IPR available	CDD	cd00105	KH-I	coord: 110..153 e-value: 1.02034E-4 score: 38.3099

Main menu

RNA binding protein MEX3B

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 3

Owlery

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