SAM domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30000140 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 10
Homology
BLAST of SAM domain-containing protein vs. Ensembl Human
Match: SAMD15 (sterile alpha motif domain containing 15 [Source:HGNC Symbol;Acc:HGNC:18631]) HSP 1 Score: 55.4546 bits (132), Expect = 2.943e-7 Identity = 26/69 (37.68%), Postives = 41/69 (59.42%), Query Frame = 3 Query: 525 SLIQLCNFQNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLNIEDPDYGRRIYLPPRN 731 S + ++ N I G++LI + SNL +MGI +F+ +KAI+ +E L IE+P + R I LP R+ Sbjct: 555 SQLGFPQYKECFITNFISGRKLIHVNCSNLPQMGITNFEDMKAISRHTQELLEIEEPLFKRSISLPYRD 623
BLAST of SAM domain-containing protein vs. Ensembl Xenopus
Match: smg8 (SMG8 nonsense mediated mRNA decay factor [Source:Xenbase;Acc:XB-GENE-965595]) HSP 1 Score: 54.299 bits (129), Expect = 3.125e-8 Identity = 23/64 (35.94%), Postives = 39/64 (60.94%), Query Frame = 3 Query: 546 FQNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLNIEDPDYGRRIYLPPRNKM 737 ++ N I G++LI + S L ++G+ DF H+K I+ +R+ LNI +P + R + LP R+ M Sbjct: 41 YEACFTQNYISGRKLIHVNCSTLPQIGVTDFQHMKEISRLIRDLLNITEPLWTRSVSLPHRDNM 104
BLAST of SAM domain-containing protein vs. Ensembl Mouse
Match: Samd15 (sterile alpha motif domain containing 15 [Source:MGI Symbol;Acc:MGI:2685109]) HSP 1 Score: 56.225 bits (134), Expect = 1.187e-7 Identity = 27/69 (39.13%), Postives = 41/69 (59.42%), Query Frame = 3 Query: 525 SLIQLCNFQNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLNIEDPDYGRRIYLPPRN 731 S + ++ N I+G++LI + SNL +MGI DF+ +KAI+ R L IE+P + R I LP R+ Sbjct: 490 SDLGFPQYKECFTENFINGQKLIHVNCSNLPQMGITDFEDMKAISYHTRVLLGIEEPLFSRSISLPYRD 558
BLAST of SAM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q95JY5|SAM15_MACFA (Sterile alpha motif domain-containing protein 15 OS=Macaca fascicularis OX=9541 GN=SAMD15 PE=2 SV=2) HSP 1 Score: 57.3806 bits (137), Expect = 3.349e-7 Identity = 27/69 (39.13%), Postives = 41/69 (59.42%), Query Frame = 3 Query: 525 SLIQLCNFQNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLNIEDPDYGRRIYLPPRN 731 S + ++ N I G++LI + SNL +MGI +F+ +KAI+ RE L IE+P + R I LP R+ Sbjct: 548 SQLGFPQYKGCFITNFISGRKLIHVNCSNLPQMGITNFEDMKAISRHTRELLEIEEPLFKRSISLPHRD 616
BLAST of SAM domain-containing protein vs. TrEMBL
Match: K1RET5 (SAM domain-containing protein OS=Crassostrea gigas OX=29159 GN=CGI_10017842 PE=4 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.779e-13 Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 3 Query: 543 NFQNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLNIEDPDYGRRIYLPPRNKM 737 N+++ I +NRIDG++LI +EAS L +GI DF HIK I+ AVRE L IE+PD+ R I LPPR + Sbjct: 38 NYKSCITSNRIDGRKLITLEASQLPNIGITDFKHIKTISKAVRELLFIEEPDWKRSISLPPRENL 102
BLAST of SAM domain-containing protein vs. TrEMBL
Match: A0A267ECP4 (SAM domain-containing protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig029633g1 PE=4 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.836e-12 Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = 3 Query: 525 SLIQLCNFQNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLNIEDPDYGRRIYLPPRNKM 737 S + L +++ N I+G+RL+ ++ASNL K+G+ +F H++A++ AVR+ L IE P + RRIYLPPR+ + Sbjct: 37 SSLGLGQYRDCFLTNGINGRRLVLVDASNLPKIGVHEFQHVQALSGAVRDLLKIESPRWDRRIYLPPRDNL 107
BLAST of SAM domain-containing protein vs. TrEMBL
Match: A0A267DFE1 (SAM domain-containing protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig031519g6 PE=4 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.523e-12 Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = 3 Query: 525 SLIQLCNFQNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLNIEDPDYGRRIYLPPRNKM 737 S + L +++ N I+G+RL+ ++ASNL K+G+ +F H++A++ AVR+ L IE P + RRIYLPPR+ + Sbjct: 37 SSLGLGQYRDCFLTNGINGRRLVLVDASNLPKIGVHEFQHVQALSGAVRDLLKIESPRWDRRIYLPPRDNL 107
BLAST of SAM domain-containing protein vs. TrEMBL
Match: A0A267DH85 (SAM domain-containing protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig029199g1 PE=4 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.733e-12 Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = 3 Query: 525 SLIQLCNFQNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLNIEDPDYGRRIYLPPRNKM 737 S + L +++ N I+G+RL+ ++ASNL K+G+ +F H++A++ AVR+ L IE P + RRIYLPPR+ + Sbjct: 37 SSLGLGQYRDCFLTNGINGRRLVLVDASNLPKIGVHEFQHVQALSGAVRDLLKIESPRWDRRIYLPPRDNL 107
BLAST of SAM domain-containing protein vs. TrEMBL
Match: A0A1I8FG85 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.566e-11 Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = 3 Query: 525 SLIQLCNFQNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLNIEDPDYGRRIYLPPRNKM 737 S + L +++ N I+G+RL+ ++ASNL K+G+ +F H++A++ AVR+ L IE P + RRIYLPPR+ + Sbjct: 75 SSLGLGQYRDCFLTNGINGRRLVLVDASNLPKIGVHEFQHVQALSGAVRDLLKIESPRWDRRIYLPPRDNL 145
BLAST of SAM domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000040150.1 (pep primary_assembly:Astyanax_mexicanus-2.0:3:46330990:46335498:-1 gene:ENSAMXG00000031813.1 transcript:ENSAMXT00000040150.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 57.3806 bits (137), Expect = 7.897e-10 Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 3 Query: 546 FQNAIYANRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLNIEDPDYGRRIYLPPRNKM 737 Q N I G++LI++ L ++G+ DF H+KAI+A VRE L + +P + R I PPR+ M Sbjct: 19 LQACFTENLITGRKLIYVNCRYLPRLGMTDFQHMKAISAHVRELLGVSEPLWSRSIADPPRDNM 82
BLAST of SAM domain-containing protein vs. Ensembl Nematostella
Match: EDO37353 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SG04]) HSP 1 Score: 63.1586 bits (152), Expect = 4.918e-12 Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 3 Query: 567 NRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLNIEDPDYGRRIYLPPRNKMDSSANKEN-VGAPKDTAFILIYHRNAPK 818 N ++G+RLI ++AS L +MG+ DF+HIK I+ +RE L IEDP + R I LP R + K++ GA D Y R K Sbjct: 38 NLVNGRRLIQVDASTLPRMGVTDFEHIKFISKKIREALGIEDPYWNRSISLPHREVLGMYLEKKSKTGAEADILTFEEYIRQLEK 122
BLAST of SAM domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000045480.1 (sterile alpha motif domain containing 15 [Source:NCBI gene;Acc:101158569]) HSP 1 Score: 55.0694 bits (131), Expect = 9.093e-9 Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 3 Query: 567 NRIDGKRLIFMEASNLVKMGIKDFDHIKAITAAVRERLNIEDPDYGRRIYLPPRNKM 737 N+I+G++LIF+ SNL K+GI DF ++ I+A VRE L I + + I PPR+ M Sbjct: 44 NQINGRKLIFVNCSNLPKLGIVDFKDMQVISARVRELLGITETPWSHSIADPPRDAM 100
BLAST of SAM domain-containing protein vs. Planmine SMEST
Match: SMESG000028623.1 (SMESG000028623.1) HSP 1 Score: 238.039 bits (606), Expect = 2.059e-67 Identity = 141/220 (64.09%), Postives = 154/220 (70.00%), Query Frame = 3 Query: 972 QRVLIAEQSAALRRIFTDAELRARVPGCIWAQSLNIIPAQHLPTEPAQHTRSEPTPSQIVEPPQSTMAEPRPGATQXXXXXXX--------------XXXXXXXXXXXXDLPPPYHSSNSST*IP-ILSTHPL**ISPPRSIYIDLVGDASEAPSLNHALDRLGLDMGDISVLTGSVPMSPTPANEPGPYTSVELNEITSPPLHRQPKR*SLPTDIDAED 1586 QRVLIAEQSA LRRIFTD ELRARVPGCIWAQSLNIIPAQHLP AQ SEP P IV+P QST A+PRPG T+ +ES+R RE+D PPPY P I+ L +SP RSIYIDLVGD +EAPSLNHALDRLGLD+G+I VLT SVPMSP PANEPG T VELNE+TSPPLH+QPKR LPTDIDAED Sbjct: 631 QRVLIAEQSADLRRIFTDVELRARVPGCIWAQSLNIIPAQHLPVGSAQQPPSEPAPPLIVKPLQSTTAKPRPGVTRRRPNRNRRRRERRRAEANLLRATESTRMSNREDDPPPPYQEFEFPDFDPDIIYAPSLINLSPLRSIYIDLVGDTTEAPSLNHALDRLGLDVGEILVLTVSVPMSPPPANEPGLSTRVELNEMTSPPLHQQPKRRCLPTDIDAED 850
BLAST of SAM domain-containing protein vs. Planmine SMEST
Match: SMESG000041408.1 (SMESG000041408.1) HSP 1 Score: 168.703 bits (426), Expect = 1.339e-64 Identity = 109/243 (44.86%), Postives = 145/243 (59.67%), Query Frame = 3 Query: 903 EEVISKITRLSRARDELVVESRSQRVLIAEQSAALRRIFTDAELRARVPGCIWAQSLNIIPAQHLPTEPAQHTRSEPTPSQIVEPPQSTMAEPRPGAT--------------QXXXXXXXXXXXXXXXXXXXDLPPPYHSSNSST*IPILSTHPL**I-SPPRSIYIDLVGDASEAPSLNHALDRLGLDMGDISVLTGSVPMSPTPANEPGPYTSVELNEITSPPLHRQPKR*SLPTDIDAED 1586 +++ KI RL+RARDEL++ESRSQR+LIAEQS ALRRIFT+AELRAR+PGC AQSL+IIPAQHLP S PTPS EP Q+T +P PG + + E+ E+ PP Y P + P+ I PP S+YIDL+ D +E P+++ AL+RL L+M +IS+L+G VP S T + PG T +E N I + L+R KR LP DID+++ Sbjct: 52 KKLFQKIARLTRARDELIIESRSQRILIAEQSTALRRIFTEAELRARLPGCSLAQSLDIIPAQHLP--------SNPTPSLPNEPSQNTTVDPTPGVSRRRPNQNRRRRERRRAEASLLRAIETVGTTSGISGPPPAYQEFEFPEFDPDIIYAPMVVIPPPPPSVYIDLIEDITETPTVDQALERLCLNMEEISILSGHVPTSRTSTSAPGTSTQIESNPIDNSSLYRHSKRRCLPVDIDSDN 286 HSP 2 Score: 98.2117 bits (243), Expect = 1.339e-64 Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1 Query: 751 IKKMSELPRIPRLSSSIIATRQRLEQLEKDHSILQVKYQKLKGTWT*PESTRKLFQK 921 + M+ELPRIPRLS SI+ATRQRLEQLEKDH++LQ KYQKLKGTW+ PEST+KLFQK Sbjct: 1 MTNMTELPRIPRLSPSIVATRQRLEQLEKDHTVLQAKYQKLKGTWSSPESTKKLFQK 57
BLAST of SAM domain-containing protein vs. Planmine SMEST
Match: SMESG000028450.1 (SMESG000028450.1) HSP 1 Score: 180.259 bits (456), Expect = 1.152e-63 Identity = 114/242 (47.11%), Postives = 143/242 (59.09%), Query Frame = 3 Query: 903 EEVISKITRLSRARDELVVESRSQRVLIAEQSAALRRIFTDAELRARVPGCIWAQSLNIIPAQHLPTEPAQHTRSEPTPSQIVEPPQSTMAEPRPGATQXXXXXXXXXXXXXXXXXXX--------------DLPPPYHSSNSST*IPILSTHPL**ISPPRSIYIDLVGDASEAPSLNHALDRLGLDMGDISVLTGSVPMSPTPANEPGPYTSVELNEITSPPLHRQPKR*SLPTDIDAED 1586 +++ KI+RLSRARDEL+VESRSQRVLI EQ LR+IFTDAELRAR+PG IWA++LNIIPAQHLP + S P S E PQ+ + EPR GA + R RR + DLPPPYH ++ H SP RSI+I+LV D +E P N L RLGLD +I++LTG+VP +EPGP T V+ N +PP +R KR PTDIDA++ Sbjct: 204 KKLYQKISRLSRARDELIVESRSQRVLIKEQGTTLRQIFTDAELRARIPGSIWARNLNIIPAQHLPLDVPLPVHSVPA-SAGTEHPQTPVVEPRTGAARRRPNRNCRRHERRRRETHLLSSTEPISAPYSIHDLPPPYH----------VTFH-----SPARSIHINLVDDENEVPVANQTLGRLGLDPSEIAILTGNVPGCLPHPDEPGPSTCVDFNINVNPPPYRPAKRRCFPTDIDADE 429 HSP 2 Score: 83.9593 bits (206), Expect = 1.152e-63 Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1 Query: 763 SELPRIPRLSSSIIATRQRLEQLEKDHSILQVKYQKLKGTWT*PESTRKLFQK 921 + LPRIPRLS SIIATRQRLEQLEKDH+ LQ KYQK+KGTW P++ +KL+QK Sbjct: 157 NNLPRIPRLSPSIIATRQRLEQLEKDHAALQDKYQKVKGTWLSPDAAKKLYQK 209
BLAST of SAM domain-containing protein vs. Planmine SMEST
Match: SMESG000070051.1 (SMESG000070051.1) HSP 1 Score: 198.364 bits (503), Expect = 8.027e-58 Identity = 123/254 (48.43%), Postives = 154/254 (60.63%), Query Frame = 3 Query: 849 LASQISEIKRNVDLTRIDEEVISKITRLSRARDELVVESRSQRVLIAEQSAALRRIFTDAELRARVPGCIWAQSLNIIPAQHLPTEPAQHTRSEPTPSQIVEPPQSTMAEPRPGATQXXXXXXXXXX-------XXXXXXXXXDLPPPYHSSNSST*IPILSTHPL**I-SPPRSIYIDLVGDASEAPSLNHALDRLGLDMGDISVLTGSVPMSPTPANEPGPYTSVELNEITSPPLHRQPKR*SLPTDIDAED 1586 L S+ ++K +++ KI+RLSRARD+LVVESRSQR+LIAEQSAALRRIFT+AELRAR+PGC WAQ LNIIPAQHL S PTP EPPQ+ + EPRPG ++ ++ R D PP Y P + P I +PP SIYIDLV DA + P+L++AL +LGLD+G+I++LTG VP SPT PG T + N + PL+ QPK PTDIDAED Sbjct: 31 LQSKYEKLKGTWSSPEFTQKLFQKISRLSRARDDLVVESRSQRILIAEQSAALRRIFTEAELRARLPGCSWAQGLNIIPAQHL--------LSNPTPPN--EPPQNVVIEPRPGVSRRRRKRRREEANLLRAIETTGTTSRANDPPPAYQEFEFPDFDPNIIYAPAVTIHTPPPSIYIDLVEDAIKVPTLDNALGQLGLDIGEITILTGRVPTSPTLVFAPGTSTQMGENSAVNSPLYHQPKHRRFPTDIDAED 274 HSP 2 Score: 82.4185 bits (202), Expect = 6.695e-17 Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 1 Query: 760 MSELPRIPRLSSSIIATRQRLEQLEKDHSILQVKYQKLKGTWT*PESTRKLFQK 921 MS+L IPRLS SIIATRQRL+QLE+DH++LQ KY+KLKGTW+ PE T+KLFQK Sbjct: 1 MSDLHWIPRLSPSIIATRQRLKQLERDHAVLQSKYEKLKGTWSSPEFTQKLFQK 54
BLAST of SAM domain-containing protein vs. Planmine SMEST
Match: SMESG000059849.1 (SMESG000059849.1) HSP 1 Score: 166.392 bits (420), Expect = 1.336e-57 Identity = 107/248 (43.15%), Postives = 145/248 (58.47%), Query Frame = 3 Query: 903 EEVISKITRLSRARDELVVESRSQRVLIAEQSAALRRIFTDAELRARVPGCIWAQSLNIIPAQHLPTEPAQHTRSEPTPSQIVEPPQSTMAEPRPG--------------ATQXXXXXXXXXXXXXXXXXXXDLPPPYHSSN------SST*IPILSTHPL**ISPPRSIYIDLVGDASEAPSLNHALDRLGLDMGDISVLTGSVPMSPTPANEPGPYTSVELNEITSPPLHRQPKR*SLPTDIDAED 1586 +++ KI+RLSR RD+L++ESR QR+LI EQ LR+IFTDAELRAR+PG + A++LNIIPAQHL E T S PTP I E Q+ +AEPR G + + S +E S P +DLPPPY PI+ H SP RSI+IDLV + E P++N +L+RL LD +I+VLTG +P +EPGP + ++ N +PP +R KR PTD+DA++ Sbjct: 537 KKLYQKISRLSRVRDDLIIESRGQRILIKEQGTTLRQIFTDAELRARIPGSVLARNLNIIPAQHLSLETPPVTLSTPTPV-IAESSQTPVAEPRSGAARRRLNRNRRRREQRRRAASLFSATEPSNAPYSIQDLPPPYQEFEFPDMEADIIYAPIVVLH-----SPARSIHIDLVDEVDETPTVNRSLERLMLDPDEIAVLTGRLPERLPLPDEPGPSSRIDFNIHINPPPYRPAKRRCFPTDMDADE 778 HSP 2 Score: 77.411 bits (189), Expect = 1.336e-57 Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 1 Query: 763 SELPRIPRLSSSIIATRQRLEQLEKDHSILQVKYQKLKGTWT*PESTRKLFQK 921 + LPRIPRLS SIIATRQRLEQLE++H+ Q KYQK+KGTW P++ +KL+QK Sbjct: 490 TNLPRIPRLSPSIIATRQRLEQLEEEHAAHQKKYQKVKGTWLSPDAAKKLYQK 542 The following BLAST results are available for this feature:
BLAST of SAM domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of SAM domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SAM domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SAM domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SAM domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of SAM domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of SAM domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 1
BLAST of SAM domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SAM domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of SAM domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SAM domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SAM domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of SAM domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of SAM domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30000140 ID=SMED30000140|Name=SAM domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2101bpback to top protein sequence of SMED30000140-orf-1 >SMED30000140-orf-1 ID=SMED30000140-orf-1|Name=SMED30000140-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=234bp MEASNLVKMGIKDFDHIKAITAAVRERLNIEDPDYGRRIYLPPRNKMDSSback to top protein sequence of SMED30000140-orf-2 >SMED30000140-orf-2 ID=SMED30000140-orf-2|Name=SMED30000140-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=118bp LKLCFNNKMDDKLIVLGESVCEEVNENWNINRDDEDDLRVPVALFWSVEDback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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