Ctd sr related rna binding protein

Overview


Name	Ctd sr related rna binding protein
Smed ID	SMED30000117
Length (bp)	2590

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Ctd sr related rna binding protein (SMED30000117) t-SNE clustered cells

Violin plots show distribution of expression levels for Ctd sr related rna binding protein (SMED30000117) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Ctd sr related rna binding protein (SMED30000117) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Ctd sr related rna binding protein (SMED30000117) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30000117

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30000117	SMESG000038716.1	SmedASXL_017091	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30000117	SMESG000038716.1	SmedASXL_017091	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
Smed sexual biotype	SMED30000117	SMESG000038716.1	Contig38321	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30000117	SMESG000038716.1	Contig38321	uc_Smed_v2	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of Ctd sr related rna binding protein vs. Ensembl Human
Match: SCAF4 (SR-related CTD associated factor 4 [Source:HGNC Symbol;Acc:HGNC:19304])

HSP 1 Score: 178.333 bits (451), Expect = 2.764e-45
Identity = 83/149 (55.70%), Postives = 110/149 (73.83%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQAST 522
            M+ VN FN+EL S+++ K P+SR KM LITK+A+KA+K YKHVVQ VEKFI KC  +YKVPGLYVID+IVRQS+HQ+  DKDVF PRF +NI  TF YL  C S+D   + RVL LWQ+NGVF  ++++ LL++    +N+  + +  T
Sbjct:    1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVAENVT 149

HSP 2 Score: 103.219 bits (256), Expect = 9.682e-22
Identity = 52/152 (34.21%), Postives = 86/152 (56.58%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAE 1833
            +P ++ +   + S T+++G L K  ++  + SL EEFG IE  NMIPPRGCA++    R+ AY+A  K++    K   + +K+AWA NKG+K D  +K  W  + G TYI  ++     +    +GG  LD D+L  + +   ++ E + A+
Sbjct:  495 LPQVKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKAD--YKQYWDVELGVTYIPWDKVKPEELESFCEGG-MLDSDTLNPDWKGIPKKPENEVAQ 643

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Human
Match: SCAF4 (SR-related CTD associated factor 4 [Source:HGNC Symbol;Acc:HGNC:19304])

HSP 1 Score: 178.333 bits (451), Expect = 2.830e-45
Identity = 83/149 (55.70%), Postives = 110/149 (73.83%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQAST 522
            M+ VN FN+EL S+++ K P+SR KM LITK+A+KA+K YKHVVQ VEKFI KC  +YKVPGLYVID+IVRQS+HQ+  DKDVF PRF +NI  TF YL  C S+D   + RVL LWQ+NGVF  ++++ LL++    +N+  + +  T
Sbjct:    1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVAENVT 149

HSP 2 Score: 103.219 bits (256), Expect = 1.078e-21
Identity = 52/152 (34.21%), Postives = 86/152 (56.58%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAE 1833
            +P ++ +   + S T+++G L K  ++  + SL EEFG IE  NMIPPRGCA++    R+ AY+A  K++    K   + +K+AWA NKG+K D  +K  W  + G TYI  ++     +    +GG  LD D+L  + +   ++ E + A+
Sbjct:  495 LPQVKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKAD--YKQYWDVELGVTYIPWDKVKPEELESFCEGG-MLDSDTLNPDWKGIPKKPENEVAQ 643

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Human
Match: SCAF8 (SR-related CTD associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959])

HSP 1 Score: 168.318 bits (425), Expect = 5.628e-42
Identity = 77/134 (57.46%), Postives = 102/134 (76.12%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLEL 477
            ME V  FN EL S+ + K P+S+ KM+ ITK+A+KA+KFYKHVVQSVEKFI KC  +YKVPGLYVID+IVRQS+HQ+  +KDVF PRF  NI++TF  L +C   D   + RVL LWQ+N VF +++++ LL++
Sbjct:    1 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDM 134

HSP 2 Score: 104.375 bits (259), Expect = 5.043e-22
Identity = 61/189 (32.28%), Postives = 103/189 (54.50%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKM--NELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAEALARGMGPSSV--EAMISVAAEVANKKIPLLNTSEKP 1938
            +P +R++ + + S T+++G + K  ++  L +L EEFG IE  NMIPPRGCA+V    R+ A++A  K+     K   + +K+AWA NKGVK   E+K  W    G TYI  E+  ++ +    +GG  +D++++  E  + ++  E  K E +     P+ V  E +++  AEV    + +L     P
Sbjct:  464 LPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVK--TEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGG-MIDQETVNTEW-ETVKSSEPVK-ETVQTTQSPTPVEKETVVTTQAEVFPPPVAMLQIPVAP 647

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Human
Match: SCAF8 (SR-related CTD associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959])

HSP 1 Score: 168.318 bits (425), Expect = 6.134e-42
Identity = 77/135 (57.04%), Postives = 102/135 (75.56%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELV 480
            ME V  FN EL S+ + K P+S+ KM+ ITK+A+KA+KFYKHVVQSVEKFI KC  +YKVPGLYVID+IVRQS+HQ+  +KDVF PRF  NI++TF  L +C   D   + RVL LWQ+N VF +++++ LL++ 
Sbjct:   79 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMA 213

HSP 2 Score: 103.99 bits (258), Expect = 6.950e-22
Identity = 61/189 (32.28%), Postives = 103/189 (54.50%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKM--NELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAEALARGMGPSSV--EAMISVAAEVANKKIPLLNTSEKP 1938
            +P +R++ + + S T+++G + K  ++  L +L EEFG IE  NMIPPRGCA+V    R+ A++A  K+     K   + +K+AWA NKGVK   E+K  W    G TYI  E+  ++ +    +GG  +D++++  E  + ++  E  K E +     P+ V  E +++  AEV    + +L     P
Sbjct:  542 LPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVK--TEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGG-MIDQETVNTEW-ETVKSSEPVK-ETVQTTQSPTPVEKETVVTTQAEVFPPPVAMLQIPVAP 725

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Human
Match: SCAF8 (SR-related CTD associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959])

HSP 1 Score: 155.606 bits (392), Expect = 4.881e-38
Identity = 71/125 (56.80%), Postives = 96/125 (76.80%), Query Frame = 1

Query:  109 LKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELV 480
            L S+ + K P+S+ KM+ ITK+A+KA+KFYKHVVQSVEKFI KC  +YKVPGLYVID+IVRQS+HQ+  +KDVF PRF  NI++TF  L +C   D   + RVL LWQ+N VF +++++ LL++ 
Sbjct:   77 LYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMA 201

HSP 2 Score: 103.99 bits (258), Expect = 6.139e-22
Identity = 61/189 (32.28%), Postives = 103/189 (54.50%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKM--NELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAEALARGMGPSSV--EAMISVAAEVANKKIPLLNTSEKP 1938
            +P +R++ + + S T+++G + K  ++  L +L EEFG IE  NMIPPRGCA+V    R+ A++A  K+     K   + +K+AWA NKGVK   E+K  W    G TYI  E+  ++ +    +GG  +D++++  E  + ++  E  K E +     P+ V  E +++  AEV    + +L     P
Sbjct:  530 LPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVK--TEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGG-MIDQETVNTEW-ETVKSSEPVK-ETVQTTQSPTPVEKETVVTTQAEVFPPPVAMLQIPVAP 713

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BLAST of Ctd sr related rna binding protein vs. Ensembl Celegans
Match: nrd-1 (NRD (Yeast Nuclear pre-mRNA Down-regulation) homolog [Source:UniProtKB/TrEMBL;Acc:O01864])

HSP 1 Score: 109.383 bits (272), Expect = 3.748e-24
Identity = 60/132 (45.45%), Postives = 80/132 (60.61%), Query Frame = 1

Query:   82 EVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYCDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLEL 477
            EV+  FN EL S+ + K  +S++K+  ITK+A+KA   YKHVV SVEK I KC  D ++  LYVID+IVR SKHQ  +KD F PRFM+      + L +C  K+     R L LW  N VF    ++ L E+
Sbjct:    4 EVMKSFNNELSSLFDSKN-MSKNKIQDITKAAIKAKSQYKHVVFSVEKLINKCKPDQRLNVLYVIDSIVRASKHQLKEKDTFGPRFMKQFDKFLMPLLKCGQKEKMRTVRTLNLWMSNKVFKESEIQPLREM 134

HSP 2 Score: 70.8626 bits (172), Expect = 2.912e-12
Identity = 41/136 (30.15%), Postives = 68/136 (50.00%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDE 1791
            +P +R     I S+T+++  +  ++ E+ L+   E  G      +I  R CA++T E R+SA    +KM E+    + +KV WA + G+ D  +F D W    G   I  E+ P++ +      GA LD +SL  E
Sbjct:  512 LPPVRIGFTIIASRTLWLKKIPTNIVENDLKQAVESCGEASRVKVIGNRACAYITMENRRSANDVVSKMREVSVAKKMVKVYWARSPGM-DSDQFSDLWDSNRGVLEIPYEKLPLDLVALCE--GAMLDIESLPIE 644

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BLAST of Ctd sr related rna binding protein vs. Ensembl Celegans
Match: rnp-7 (RNP (RRM RNA binding domain) containing [Source:UniProtKB/TrEMBL;Acc:Q09584])

HSP 1 Score: 50.447 bits (119), Expect = 3.350e-6
Identity = 24/75 (32.00%), Postives = 42/75 (56.00%), Query Frame = 1

Query: 1423 KTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMI-----PPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKVAW 1632
            +T+F+G ++   SESKLR   E +G I++  M+      PRG AF+ +  +   + A  K + +K +G+ L V +
Sbjct:  104 RTLFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVDY 178

[Close]

Query: 1423 KTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMI-----PPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKVAW 1632
            +T+F+G ++   SESKLR   E +G I++  M+      PRG AF+ +  +   + A  K + +K +G+ L V +
Sbjct:  104 RTLFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVDY 178

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Fly
Match: CG4266 (gene:FBgn0034598 transcript:FBtr0310422)

HSP 1 Score: 164.081 bits (414), Expect = 1.636e-43
Identity = 75/135 (55.56%), Postives = 99/135 (73.33%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELV 480
            ME V  FN EL  + + + P+S+ KM+ ITKSAM+A+K YKHVVQSVEKFI KC  +YKVPGLYVID+IVRQS+HQY  DKD+F PRF RN+  TF  L +C  +D   + RVL LWQ+N VF +++++ + +L 
Sbjct:    1 METVVAFNNELSGLYDSRPPISKAKMAAITKSAMRAIKLYKHVVQSVEKFILKCKPEYKVPGLYVIDSIVRQSRHQYGMDKDLFAPRFQRNLTETFANLFRCAPEDKSRIIRVLNLWQKNNVFKSEVIQPIFDLA 135

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Fly
Match: CG4266 (gene:FBgn0034598 transcript:FBtr0342871)

HSP 1 Score: 167.162 bits (422), Expect = 4.943e-42
Identity = 75/135 (55.56%), Postives = 99/135 (73.33%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELV 480
            ME V  FN EL  + + + P+S+ KM+ ITKSAM+A+K YKHVVQSVEKFI KC  +YKVPGLYVID+IVRQS+HQY  DKD+F PRF RN+  TF  L +C  +D   + RVL LWQ+N VF +++++ + +L 
Sbjct:    1 METVVAFNNELSGLYDSRPPISKAKMAAITKSAMRAIKLYKHVVQSVEKFILKCKPEYKVPGLYVIDSIVRQSRHQYGMDKDLFAPRFQRNLTETFANLFRCAPEDKSRIIRVLNLWQKNNVFKSEVIQPIFDLA 135

HSP 2 Score: 103.219 bits (256), Expect = 5.173e-22
Identity = 53/165 (32.12%), Postives = 90/165 (54.55%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQ----FEQQKAEALARGMGPSSV 1866
            +P ++ + + + S T+++GHL K V + +L     E+G I   + I PRGCAF+   +R+ A+KA   +   K +GR + ++WA  KGVK  KE+KD W  + G TYI   +   +   +  + G   DED++  +++Q I Q     ++ K  ++A   G  SV
Sbjct:  385 LPDIKKEHLSVCSTTLWVGHLSKLVYQEELSDTFGEYGDIVSIDQIVPRGCAFIVMNRRQDAHKAMQALKNHKLQGRAITISWAAGKGVK-SKEWKDYWDLELGVTYIPWSKLSSDTDFDALEEGGMFDEDTMPIQMKQKINQAKNAAKEHKGASIAEAAGAPSV 548

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Fly
Match: CG4266 (gene:FBgn0034598 transcript:FBtr0071629)

HSP 1 Score: 167.162 bits (422), Expect = 5.180e-42
Identity = 75/135 (55.56%), Postives = 99/135 (73.33%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELV 480
            ME V  FN EL  + + + P+S+ KM+ ITKSAM+A+K YKHVVQSVEKFI KC  +YKVPGLYVID+IVRQS+HQY  DKD+F PRF RN+  TF  L +C  +D   + RVL LWQ+N VF +++++ + +L 
Sbjct:    1 METVVAFNNELSGLYDSRPPISKAKMAAITKSAMRAIKLYKHVVQSVEKFILKCKPEYKVPGLYVIDSIVRQSRHQYGMDKDLFAPRFQRNLTETFANLFRCAPEDKSRIIRVLNLWQKNNVFKSEVIQPIFDLA 135

HSP 2 Score: 103.219 bits (256), Expect = 4.964e-22
Identity = 53/165 (32.12%), Postives = 90/165 (54.55%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQ----FEQQKAEALARGMGPSSV 1866
            +P ++ + + + S T+++GHL K V + +L     E+G I   + I PRGCAF+   +R+ A+KA   +   K +GR + ++WA  KGVK  KE+KD W  + G TYI   +   +   +  + G   DED++  +++Q I Q     ++ K  ++A   G  SV
Sbjct:  388 LPDIKKEHLSVCSTTLWVGHLSKLVYQEELSDTFGEYGDIVSIDQIVPRGCAFIVMNRRQDAHKAMQALKNHKLQGRAITISWAAGKGVK-SKEWKDYWDLELGVTYIPWSKLSSDTDFDALEEGGMFDEDTMPIQMKQKINQAKNAAKEHKGASIAEAAGAPSV 551

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Fly
Match: CG4266 (gene:FBgn0034598 transcript:FBtr0113100)

HSP 1 Score: 166.777 bits (421), Expect = 7.683e-42
Identity = 75/135 (55.56%), Postives = 99/135 (73.33%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELV 480
            ME V  FN EL  + + + P+S+ KM+ ITKSAM+A+K YKHVVQSVEKFI KC  +YKVPGLYVID+IVRQS+HQY  DKD+F PRF RN+  TF  L +C  +D   + RVL LWQ+N VF +++++ + +L 
Sbjct:    1 METVVAFNNELSGLYDSRPPISKAKMAAITKSAMRAIKLYKHVVQSVEKFILKCKPEYKVPGLYVIDSIVRQSRHQYGMDKDLFAPRFQRNLTETFANLFRCAPEDKSRIIRVLNLWQKNNVFKSEVIQPIFDLA 135

HSP 2 Score: 103.219 bits (256), Expect = 4.614e-22
Identity = 53/165 (32.12%), Postives = 90/165 (54.55%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQ----FEQQKAEALARGMGPSSV 1866
            +P ++ + + + S T+++GHL K V + +L     E+G I   + I PRGCAF+   +R+ A+KA   +   K +GR + ++WA  KGVK  KE+KD W  + G TYI   +   +   +  + G   DED++  +++Q I Q     ++ K  ++A   G  SV
Sbjct:  479 LPDIKKEHLSVCSTTLWVGHLSKLVYQEELSDTFGEYGDIVSIDQIVPRGCAFIVMNRRQDAHKAMQALKNHKLQGRAITISWAAGKGVK-SKEWKDYWDLELGVTYIPWSKLSSDTDFDALEEGGMFDEDTMPIQMKQKINQAKNAAKEHKGASIAEAAGAPSV 642

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Fly
Match: CG14641 (gene:FBgn0037220 transcript:FBtr0078985)

HSP 1 Score: 54.6842 bits (130), Expect = 2.464e-7
Identity = 27/87 (31.03%), Postives = 50/87 (57.47%), Query Frame = 1

Query: 1426 TVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAK-MNELKFEGRELKVAWAPNK-----GVKDDKEF 1668
            T+++G+L + ++E +LR    +FG I    ++P + CAFV + KR +A  A  +  N+L  +GR++ + WA ++       K D+ F
Sbjct:  233 TLYVGNLPEEITEPELRDQFYQFGEIRSIALVPRQQCAFVQYTKRNAAELAAERTFNKLVIQGRKVSIKWAHSQAKQGTAAKTDRRF 319

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Zebrafish
Match: scaf4a (SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003])

HSP 1 Score: 170.629 bits (431), Expect = 4.402e-43
Identity = 78/134 (58.21%), Postives = 101/134 (75.37%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLEL 477
            M+ VN FN EL S+++ K P+SR KM  ITKSA+KA+K YKHVVQ VEKFI KC  +YKVPGLYV+D+IVRQS+HQ+  DKDVF PRF +NI  TF  L  C ++D   + RVL LWQ+NGVF  ++++ LL++
Sbjct:    1 MDAVNAFNHELFSLMDTKPPISRAKMISITKSAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVVDSIVRQSRHQFGADKDVFGPRFTKNITGTFENLCLCPTEDRSKIVRVLNLWQKNGVFKIEVIQPLLDM 134

HSP 2 Score: 103.99 bits (258), Expect = 3.738e-22
Identity = 55/153 (35.95%), Postives = 87/153 (56.86%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAEA 1836
            +P ++N  + + S T+++G L K   +  + S+ EEFG I+  NMIPPRGCA++    R+ AY+A  K++    K   + +K+AWA NKG+K   EFK  W  + G TY+   +  +  +    +GG  LD D+L  E R +  Q EQ+  E+
Sbjct:  445 LPPVKNNTLSVCSTTLWVGQLDKRTQQQDVASILEEFGQIDSINMIPPRGCAYIVMIHRQDAYRALQKLSRGPYKVNQKAIKIAWALNKGIK--AEFKQYWDVELGVTYVPWSKVKMEDLDVFREGG-MLDSDTLAPEWRNS--QIEQKTDES 592

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Zebrafish
Match: scaf4b (SR-related CTD-associated factor 4b [Source:ZFIN;Acc:ZDB-GENE-050506-42])

HSP 1 Score: 156.377 bits (394), Expect = 1.070e-38
Identity = 71/152 (46.71%), Postives = 103/152 (67.76%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQASTIVS 531
            ME VN FN E+ S+++   P+SR KM  +TK+ +KA++ YKHVVQ VEKFI +C  D KVPGLYV+D+I+RQS+HQ+  DKD+F PRF++N   TF  L +C   D   + RVL LWQ+N VF  ++++ L+++   P     +L+  T V+
Sbjct:    3 MEAVNAFNGEMSSMMDMTPPISRAKMMSVTKAGIKAIRLYKHVVQIVEKFIKRCKPDLKVPGLYVVDSIIRQSRHQFGADKDLFGPRFLKNFTVTFQNLFECPEDDKGKILRVLNLWQKNEVFGLEIIQPLVDMATAPVLP--VLENGTTVT 152

HSP 2 Score: 99.7525 bits (247), Expect = 6.456e-21
Identity = 51/142 (35.92%), Postives = 81/142 (57.04%), Query Frame = 1

Query: 1387 PYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAI 1806
            P ++ + + + + T++IG L K      + SL EEFG IE  NMIPPRGCA+V    R+ A  A  K+++  +K   + +K+AWA NKG+K   E+K  W  + G T+I   +   N I  + +GG + D ++L  E + A+
Sbjct:  494 PSVKKETLSVCTTTLWIGQLDKKTQRQDITSLMEEFGQIESINMIPPRGCAYVAMVHRQDAQTALNKLSKTSVKVNQKTIKIAWAMNKGIKS--EYKKFWDVERGITFIPWGKVKPNDIQSLQEGGLF-DPETLKPEWKAAL 632

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Zebrafish
Match: scaf4a (SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003])

HSP 1 Score: 155.221 bits (391), Expect = 3.847e-38
Identity = 70/120 (58.33%), Postives = 91/120 (75.83%), Query Frame = 1

Query:  121 LECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLEL 477
            ++ K P+SR KM  ITKSA+KA+K YKHVVQ VEKFI KC  +YKVPGLYV+D+IVRQS+HQ+  DKDVF PRF +NI  TF  L  C ++D   + RVL LWQ+NGVF  ++++ LL++
Sbjct:    1 MDTKPPISRAKMISITKSAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVVDSIVRQSRHQFGADKDVFGPRFTKNITGTFENLCLCPTEDRSKIVRVLNLWQKNGVFKIEVIQPLLDM 120

HSP 2 Score: 103.99 bits (258), Expect = 3.458e-22
Identity = 55/153 (35.95%), Postives = 87/153 (56.86%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAEA 1836
            +P ++N  + + S T+++G L K   +  + S+ EEFG I+  NMIPPRGCA++    R+ AY+A  K++    K   + +K+AWA NKG+K   EFK  W  + G TY+   +  +  +    +GG  LD D+L  E R +  Q EQ+  E+
Sbjct:  431 LPPVKNNTLSVCSTTLWVGQLDKRTQQQDVASILEEFGQIDSINMIPPRGCAYIVMIHRQDAYRALQKLSRGPYKVNQKAIKIAWALNKGIK--AEFKQYWDVELGVTYVPWSKVKMEDLDVFREGG-MLDSDTLAPEWRNS--QIEQKTDES 578

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Zebrafish
Match: scaf4a (SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003])

HSP 1 Score: 155.221 bits (391), Expect = 3.847e-38
Identity = 70/120 (58.33%), Postives = 91/120 (75.83%), Query Frame = 1

Query:  121 LECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLEL 477
            ++ K P+SR KM  ITKSA+KA+K YKHVVQ VEKFI KC  +YKVPGLYV+D+IVRQS+HQ+  DKDVF PRF +NI  TF  L  C ++D   + RVL LWQ+NGVF  ++++ LL++
Sbjct:    1 MDTKPPISRAKMISITKSAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVVDSIVRQSRHQFGADKDVFGPRFTKNITGTFENLCLCPTEDRSKIVRVLNLWQKNGVFKIEVIQPLLDM 120

HSP 2 Score: 103.99 bits (258), Expect = 3.458e-22
Identity = 55/153 (35.95%), Postives = 87/153 (56.86%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAEA 1836
            +P ++N  + + S T+++G L K   +  + S+ EEFG I+  NMIPPRGCA++    R+ AY+A  K++    K   + +K+AWA NKG+K   EFK  W  + G TY+   +  +  +    +GG  LD D+L  E R +  Q EQ+  E+
Sbjct:  431 LPPVKNNTLSVCSTTLWVGQLDKRTQQQDVASILEEFGQIDSINMIPPRGCAYIVMIHRQDAYRALQKLSRGPYKVNQKAIKIAWALNKGIK--AEFKQYWDVELGVTYVPWSKVKMEDLDVFREGG-MLDSDTLAPEWRNS--QIEQKTDES 578

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Zebrafish
Match: scaf4b (SR-related CTD-associated factor 4b [Source:ZFIN;Acc:ZDB-GENE-050506-42])

HSP 1 Score: 152.14 bits (383), Expect = 1.123e-37
Identity = 68/138 (49.28%), Postives = 97/138 (70.29%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEP 489
            ME VN FN E+ S+++   P+SR KM  +TK+ +KA++ YKHVVQ VEKFI +C  D KVPGLYV+D+I+RQS+HQ+  DKD+F PRF++N   TF  L +C   D   + RVL LWQ+N VF  ++++ L+++   P
Sbjct:    3 MEAVNAFNGEMSSMMDMTPPISRAKMMSVTKAGIKAIRLYKHVVQIVEKFIKRCKPDLKVPGLYVVDSIIRQSRHQFGADKDLFGPRFLKNFTVTFQNLFECPEDDKGKILRVLNLWQKNEVFGLEIIQPLVDMATAP 140

HSP 2 Score: 98.9821 bits (245), Expect = 8.742e-21
Identity = 51/142 (35.92%), Postives = 81/142 (57.04%), Query Frame = 1

Query: 1387 PYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAI 1806
            P ++ + + + + T++IG L K      + SL EEFG IE  NMIPPRGCA+V    R+ A  A  K+++  +K   + +K+AWA NKG+K   E+K  W  + G T+I   +   N I  + +GG + D ++L  E + A+
Sbjct:  494 PSVKKETLSVCTTTLWIGQLDKKTQRQDITSLMEEFGQIESINMIPPRGCAYVAMVHRQDAQTALNKLSKTSVKVNQKTIKIAWAMNKGIKS--EYKKFWDVERGITFIPWGKVKPNDIQSLQEGGLF-DPETLKPEWKAAL 632

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Xenopus
Match: SCAF4 (SR-related CTD associated factor 4 [Source:NCBI gene;Acc:595037])

HSP 1 Score: 175.252 bits (443), Expect = 3.143e-44
Identity = 81/150 (54.00%), Postives = 109/150 (72.67%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQASTI 525
            M+ VN FN+EL S+++ K P+SR KM LITK+A+KA+K YKHVVQ VEKFI KC  +YKVPGLYVID+IVRQS+HQ+  DKDVF PRF +N+  TF  L  C S+D   + RVL LWQ+NGVF  ++++ LL++      +D +  +S +
Sbjct:    1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGIDKDVFGPRFTKNLTATFQCLYTCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGAAAADVMTDSSMM 150

HSP 2 Score: 102.834 bits (255), Expect = 1.223e-21
Identity = 59/171 (34.50%), Postives = 93/171 (54.39%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQ----QKAEALARGMGPSSVEAMI 1878
            +P ++++ V I S T++IG L K  ++  + S  EEFG IE  NMIPPRGCA++    R+ AY+A  K++   +K   + +K+AWA NKG+K   E+K  W  + G TYI   +     +    +GG  LD D+L  E +   ++ E     Q   A  +G+G +S    +
Sbjct:  466 LPPIKSETVSICSTTLWIGQLDKKTTQQDVGSFLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALMKLSRGNVKVNQKAIKIAWALNKGIK--AEYKQYWDVEIGVTYIPWNKVKPEDLENFCEGG-MLDNDTLCPEWKPLAKKPEPKDVSQNGAAETKGVGEASPAPQV 633

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Xenopus
Match: SCAF4 (SR-related CTD associated factor 4 [Source:NCBI gene;Acc:595037])

HSP 1 Score: 175.252 bits (443), Expect = 3.217e-44
Identity = 81/150 (54.00%), Postives = 109/150 (72.67%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQASTI 525
            M+ VN FN+EL S+++ K P+SR KM LITK+A+KA+K YKHVVQ VEKFI KC  +YKVPGLYVID+IVRQS+HQ+  DKDVF PRF +N+  TF  L  C S+D   + RVL LWQ+NGVF  ++++ LL++      +D +  +S +
Sbjct:    1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGIDKDVFGPRFTKNLTATFQCLYTCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGAAAADVMTDSSMM 150

HSP 2 Score: 102.834 bits (255), Expect = 1.275e-21
Identity = 59/171 (34.50%), Postives = 92/171 (53.80%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKM--NELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQ----QKAEALARGMGPSSVEAMI 1878
            +P ++++ V I S T++IG L K  ++  + S  EEFG IE  NMIPPRGCA++    R+ AY+A  K+    +K   + +K+AWA NKG+K   E+K  W  + G TYI   +     +    +GG  LD D+L  E +   ++ E     Q   A  +G+G +S    +
Sbjct:  417 LPPIKSETVSICSTTLWIGQLDKKTTQQDVGSFLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALMKLSRGNVKVNQKAIKIAWALNKGIK--AEYKQYWDVEIGVTYIPWNKVKPEDLENFCEGG-MLDNDTLCPEWKPLAKKPEPKDVSQNGAAETKGVGEASPAPQV 584

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Xenopus
Match: SCAF8 (SR-related CTD associated factor 8 [Source:NCBI gene;Acc:100101752])

HSP 1 Score: 167.548 bits (423), Expect = 7.888e-42
Identity = 76/135 (56.30%), Postives = 102/135 (75.56%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELV 480
            ME V  FN EL S+ + + P+S+ KM+ ITK+A+KA+KFYKHVVQSVEKFI KC  +YKVPGLYVID+IVRQS+HQ+  DKD+F PRF  NI+ TF  L +C + D   + RVL LWQ+N VF +++++ LL++ 
Sbjct:   18 MEAVKTFNSELYSLNDYRPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQDKDLFAPRFSNNIINTFQNLYRCPADDKSKIVRVLNLWQKNNVFKSEIIQPLLDMA 152

HSP 2 Score: 102.449 bits (254), Expect = 1.824e-21
Identity = 59/185 (31.89%), Postives = 105/185 (56.76%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKM--NELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAEAL-ARGMGPSSVEAMISVAAEVANKKIPLLNTS 1929
            +P +R++ + + S T+++G + K  ++  L ++ EEFG IE  NMIPPRGCA+V    R+ +Y+A  K+  +  K   + +K+AWA NKGVK   E+K  W    G TYI  E+  ++ +    +GG  +D++S+ ++ +       Q+ +EA+ A+   P +  A +     V +  IP++ T+
Sbjct:  478 LPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNVFEEFGQIESINMIPPRGCAYVCMVHRQDSYRALQKLSSSSCKIGSKIIKIAWALNKGVK--TEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGG-MIDQESVNNDWK------AQKSSEAVGAKESTPDN--ATVVPTTIVTSAPIPVVTTA 651

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Xenopus
Match: SCAF4 (SR-related CTD associated factor 4 [Source:NCBI gene;Acc:595037])

HSP 1 Score: 157.147 bits (396), Expect = 7.102e-41
Identity = 73/124 (58.87%), Postives = 95/124 (76.61%), Query Frame = 1

Query:  109 LKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLEL 477
            L S+++ K P+SR KM LITK+A+KA+K YKHVVQ VEKFI KC  +YKVPGLYVID+IVRQS+HQ+  DKDVF PRF +N+  TF  L  C S+D   + RVL LWQ+NGVF  ++++ LL++
Sbjct:   13 LFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGIDKDVFGPRFTKNLTATFQCLYTCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDM 136

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Xenopus
Match: SCAF4 (SR-related CTD associated factor 4 [Source:NCBI gene;Acc:595037])

HSP 1 Score: 160.614 bits (405), Expect = 1.385e-39
Identity = 75/140 (53.57%), Postives = 101/140 (72.14%), Query Frame = 1

Query:  109 LKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQASTI 525
            L S+++ K P+SR KM LITK+A+KA+K YKHVVQ VEKFI KC  +YKVPGLYVID+IVRQS+HQ+  DKDVF PRF +N+  TF  L  C S+D   + RVL LWQ+NGVF  ++++ LL++      +D +  +S +
Sbjct:   13 LFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGIDKDVFGPRFTKNLTATFQCLYTCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGAAAADVMTDSSMM 152

HSP 2 Score: 105.145 bits (261), Expect = 2.453e-22
Identity = 63/191 (32.98%), Postives = 99/191 (51.83%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKM--NELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQ----QKAEALARGMGPSSVEAM------ISVAAEVANKKIPLL 1920
            +P ++++ V I S T++IG L K  ++  + S  EEFG IE  NMIPPRGCA++    R+ AY+A  K+    +K   + +K+AWA NKG+K   E+K  W  + G TYI   +     +    +GG  LD D+L  E +   ++ E     Q   A  +G+G +S          I + A +   ++P L
Sbjct:  468 LPPIKSETVSICSTTLWIGQLDKKTTQQDVGSFLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALMKLSRGNVKVNQKAIKIAWALNKGIK--AEYKQYWDVEIGVTYIPWNKVKPEDLENFCEGG-MLDNDTLCPEWKPLAKKPEPKDVSQNGAAETKGVGEASPAPQVLPLLSIPIRAPIPGMQVPPL 655

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Mouse
Match: Scaf4 (SR-related CTD-associated factor 4 [Source:MGI Symbol;Acc:MGI:2146350])

HSP 1 Score: 179.489 bits (454), Expect = 9.176e-46
Identity = 83/149 (55.70%), Postives = 110/149 (73.83%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQAST 522
            M+ VN FN+EL S+++ K P+SR KM LITK+A+KA+K YKHVVQ VEKFI KC  +YKVPGLYVID+IVRQS+HQ+  DKDVF PRF +NI  TF YL  C S+D   + RVL LWQ+NGVF  ++++ LL++    +N+  + +  T
Sbjct:    1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVAENVT 149

HSP 2 Score: 103.605 bits (257), Expect = 5.104e-22
Identity = 50/140 (35.71%), Postives = 81/140 (57.86%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELR 1797
            +P ++++   + S T+++G L K  ++  + SL EEFG IE  NMIPPRGCA++    R+ AY+A  K++    K   + +K+AWA NKG+K D  +K  W  + G TYI  ++     +    +GG  LD D+L  + +
Sbjct:  556 LPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKAD--YKQYWDVELGVTYIPWDKVKAEELESFCEGG-MLDSDTLNPDWK 692

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Mouse
Match: Scaf4 (SR-related CTD-associated factor 4 [Source:MGI Symbol;Acc:MGI:2146350])

HSP 1 Score: 179.489 bits (454), Expect = 9.434e-46
Identity = 83/149 (55.70%), Postives = 110/149 (73.83%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQAST 522
            M+ VN FN+EL S+++ K P+SR KM LITK+A+KA+K YKHVVQ VEKFI KC  +YKVPGLYVID+IVRQS+HQ+  DKDVF PRF +NI  TF YL  C S+D   + RVL LWQ+NGVF  ++++ LL++    +N+  + +  T
Sbjct:    1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVAENVT 149

HSP 2 Score: 103.605 bits (257), Expect = 5.106e-22
Identity = 50/140 (35.71%), Postives = 81/140 (57.86%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELR 1797
            +P ++++   + S T+++G L K  ++  + SL EEFG IE  NMIPPRGCA++    R+ AY+A  K++    K   + +K+AWA NKG+K D  +K  W  + G TYI  ++     +    +GG  LD D+L  + +
Sbjct:  557 LPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKAD--YKQYWDVELGVTYIPWDKVKAEELESFCEGG-MLDSDTLNPDWK 693

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Mouse
Match: Scaf4 (SR-related CTD-associated factor 4 [Source:MGI Symbol;Acc:MGI:2146350])

HSP 1 Score: 179.104 bits (453), Expect = 1.050e-45
Identity = 83/149 (55.70%), Postives = 110/149 (73.83%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQAST 522
            M+ VN FN+EL S+++ K P+SR KM LITK+A+KA+K YKHVVQ VEKFI KC  +YKVPGLYVID+IVRQS+HQ+  DKDVF PRF +NI  TF YL  C S+D   + RVL LWQ+NGVF  ++++ LL++    +N+  + +  T
Sbjct:    1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVAENVT 149

HSP 2 Score: 103.605 bits (257), Expect = 5.630e-22
Identity = 50/140 (35.71%), Postives = 81/140 (57.86%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELR 1797
            +P ++++   + S T+++G L K  ++  + SL EEFG IE  NMIPPRGCA++    R+ AY+A  K++    K   + +K+AWA NKG+K D  +K  W  + G TYI  ++     +    +GG  LD D+L  + +
Sbjct:  560 LPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKAD--YKQYWDVELGVTYIPWDKVKAEELESFCEGG-MLDSDTLNPDWK 696

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Mouse
Match: Scaf8 (SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212])

HSP 1 Score: 167.548 bits (423), Expect = 5.335e-42
Identity = 77/135 (57.04%), Postives = 102/135 (75.56%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELV 480
            ME V  FN EL S+ + K P+S+ KM+ ITK+A+KA+KFYKHVVQSVEKFI KC  +YKVPGLYVID+IVRQS+HQ+  +KDVF PRF  NI++TF  L +C   D   + RVL LWQ+N VF +++++ LL++ 
Sbjct:    1 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMA 135

HSP 2 Score: 103.219 bits (256), Expect = 7.794e-22
Identity = 57/187 (30.48%), Postives = 99/187 (52.94%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKM--NELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAEALARGMGPSSVEAMISVAAEVANKKIPLLNTSEKP 1938
            +P +R++ + + S T+++G + K  ++  L +L EEFG IE  NMIPPRGCA+V    R+ +++A  K+     K   + +K+AWA NKGVK   E+K  W    G TYI  E+  ++ +    +GG  +D++++  E          ++    A+   P   E++++  AEV    + +L     P
Sbjct:  464 LPPVRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSGSYKIGSKVIKIAWALNKGVK--TEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGG-MIDQETVNAEWETVKASEPVKEPVQTAQSPAPVEKESVVTTQAEVFPPPVAMLQIPVAP 647

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Mouse
Match: Scaf8 (SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212])

HSP 1 Score: 121.324 bits (303), Expect = 5.607e-32
Identity = 60/96 (62.50%), Postives = 76/96 (79.17%), Query Frame = 1

Query:  109 LKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKD 393
            L S+ + K P+S+ KM+ ITK+A+KA+KFYKHVVQSVEKFI KC  +YKVPGLYVID+IVRQS+HQ+  +KDVF PRF  NI++TF  L +C   D
Sbjct:    7 LYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDD 102

[Close]

BLAST of Ctd sr related rna binding protein vs. UniProt/SwissProt
Match: sp|Q7TSH6|SCAF4_MOUSE (SR-related and CTD-associated factor 4 OS=Mus musculus OX=10090 GN=Scaf4 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 6.418e-45
Identity = 83/149 (55.70%), Postives = 110/149 (73.83%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQAST 522
            M+ VN FN+EL S+++ K P+SR KM LITK+A+KA+K YKHVVQ VEKFI KC  +YKVPGLYVID+IVRQS+HQ+  DKDVF PRF +NI  TF YL  C S+D   + RVL LWQ+NGVF  ++++ LL++    +N+  + +  T
Sbjct:    1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVAENVT 149

HSP 2 Score: 103.605 bits (257), Expect = 3.570e-21
Identity = 50/140 (35.71%), Postives = 81/140 (57.86%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELR 1797
            +P ++++   + S T+++G L K  ++  + SL EEFG IE  NMIPPRGCA++    R+ AY+A  K++    K   + +K+AWA NKG+K D  +K  W  + G TYI  ++     +    +GG  LD D+L  + +
Sbjct:  556 LPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKAD--YKQYWDVELGVTYIPWDKVKAEELESFCEGG-MLDSDTLNPDWK 692

[Close]

BLAST of Ctd sr related rna binding protein vs. UniProt/SwissProt
Match: sp|O95104|SCAF4_HUMAN (SR-related and CTD-associated factor 4 OS=Homo sapiens OX=9606 GN=SCAF4 PE=1 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 1.327e-44
Identity = 83/149 (55.70%), Postives = 110/149 (73.83%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQAST 522
            M+ VN FN+EL S+++ K P+SR KM LITK+A+KA+K YKHVVQ VEKFI KC  +YKVPGLYVID+IVRQS+HQ+  DKDVF PRF +NI  TF YL  C S+D   + RVL LWQ+NGVF  ++++ LL++    +N+  + +  T
Sbjct:    1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVAENVT 149

HSP 2 Score: 103.219 bits (256), Expect = 4.649e-21
Identity = 52/152 (34.21%), Postives = 86/152 (56.58%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAE 1833
            +P ++ +   + S T+++G L K  ++  + SL EEFG IE  NMIPPRGCA++    R+ AY+A  K++    K   + +K+AWA NKG+K D  +K  W  + G TYI  ++     +    +GG  LD D+L  + +   ++ E + A+
Sbjct:  495 LPQVKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKAD--YKQYWDVELGVTYIPWDKVKPEELESFCEGG-MLDSDTLNPDWKGIPKKPENEVAQ 643

[Close]

BLAST of Ctd sr related rna binding protein vs. UniProt/SwissProt
Match: sp|Q63627|SCAF4_RAT (SR-related and CTD-associated factor 4 OS=Rattus norvegicus OX=10116 GN=Scaf4 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.628e-44
Identity = 82/141 (58.16%), Postives = 107/141 (75.89%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNS 498
            M+ VN FN+EL S+++ K P+SR KM LITK+A+KA+K YKHVVQ VEKFI KC  +YKVPGLYVID+IVRQS+HQ+  DKDVF PRF +NI  TF YL  C S+D   + RVL LWQ+NGVF  ++++ LL++    +N+
Sbjct:    1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNA 141

HSP 2 Score: 105.531 bits (262), Expect = 9.630e-22
Identity = 53/152 (34.87%), Postives = 87/152 (57.24%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAE 1833
            +P ++++   + S T+++G L K  ++  + SL EEFG IE  NMIPPRGCA++    R+ AY+A  K++    K   + +K+AWA NKG+K D  FK  W  + G TYI  ++     +    +GG  LD D+L  + +   ++ E + A+
Sbjct:  561 LPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKAD--FKQYWDVELGVTYIPWDKVKAEELESFCEGG-MLDSDTLNPDWKGIPKKPENEVAQ 709

[Close]

BLAST of Ctd sr related rna binding protein vs. UniProt/SwissProt
Match: sp|Q9UPN6|SCAF8_HUMAN (SR-related and CTD-associated factor 8 OS=Homo sapiens OX=9606 GN=SCAF8 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.703e-41
Identity = 77/134 (57.46%), Postives = 102/134 (76.12%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLEL 477
            ME V  FN EL S+ + K P+S+ KM+ ITK+A+KA+KFYKHVVQSVEKFI KC  +YKVPGLYVID+IVRQS+HQ+  +KDVF PRF  NI++TF  L +C   D   + RVL LWQ+N VF +++++ LL++
Sbjct:    1 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDM 134

HSP 2 Score: 104.375 bits (259), Expect = 2.422e-21
Identity = 61/189 (32.28%), Postives = 103/189 (54.50%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKM--NELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAEALARGMGPSSV--EAMISVAAEVANKKIPLLNTSEKP 1938
            +P +R++ + + S T+++G + K  ++  L +L EEFG IE  NMIPPRGCA+V    R+ A++A  K+     K   + +K+AWA NKGVK   E+K  W    G TYI  E+  ++ +    +GG  +D++++  E  + ++  E  K E +     P+ V  E +++  AEV    + +L     P
Sbjct:  464 LPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVK--TEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGG-MIDQETVNTEW-ETVKSSEPVK-ETVQTTQSPTPVEKETVVTTQAEVFPPPVAMLQIPVAP 647

[Close]

BLAST of Ctd sr related rna binding protein vs. UniProt/SwissProt
Match: sp|Q6DID3|SCAF8_MOUSE (SR-related and CTD-associated factor 8 OS=Mus musculus OX=10090 GN=Scaf8 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.732e-41
Identity = 77/135 (57.04%), Postives = 102/135 (75.56%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELV 480
            ME V  FN EL S+ + K P+S+ KM+ ITK+A+KA+KFYKHVVQSVEKFI KC  +YKVPGLYVID+IVRQS+HQ+  +KDVF PRF  NI++TF  L +C   D   + RVL LWQ+N VF +++++ LL++ 
Sbjct:    1 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMA 135

HSP 2 Score: 103.219 bits (256), Expect = 5.452e-21
Identity = 57/187 (30.48%), Postives = 99/187 (52.94%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKM--NELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAEALARGMGPSSVEAMISVAAEVANKKIPLLNTSEKP 1938
            +P +R++ + + S T+++G + K  ++  L +L EEFG IE  NMIPPRGCA+V    R+ +++A  K+     K   + +K+AWA NKGVK   E+K  W    G TYI  E+  ++ +    +GG  +D++++  E          ++    A+   P   E++++  AEV    + +L     P
Sbjct:  464 LPPVRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSGSYKIGSKVIKIAWALNKGVK--TEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGG-MIDQETVNAEWETVKASEPVKEPVQTAQSPAPVEKESVVTTQAEVFPPPVAMLQIPVAP 647

[Close]

BLAST of Ctd sr related rna binding protein vs. TrEMBL
Match: A0A4E0S1F6 (Protein SCAF8 OS=Fasciola hepatica OX=6192 GN=D915_004738 PE=4 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.492e-57
Identity = 134/308 (43.51%), Postives = 177/308 (57.47%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYCDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQASTIVSKLVNEW------NVQRRKPEEKLETFMPHHELCNHDIISKNEGGLIDSITKLLTRFHAETGQDVSAEIN--QIQILHKKIVEQSALLAQGQMIDADTLSQLHQSMEELTXXXXXXXXVQQSKLAMLATDDKEHFNEAITDMEFVEQLQQMVDTLGQT 978
            ME V  F  ELK++ E  LPVSR KM+ IT++A+KAL+FYKH+VQ VEKFI +C    K+PGLYVIDAIVRQSK+ Y DKDV+ PRFMRN+V  FL + QCD KD   + RVL LWQ+  VFP D+++ L  +V +P N++ + +A   V+  VN        N Q  KP E +ET     E+ ++ +IS                      +  SAE+   Q+Q L +KI EQSALL Q +MID + LSQL   M ELT+        +  + AM   D        + D   + +LQ MVDTL QT
Sbjct:    3 MEHVVTFTNELKTLTEVALPVSRKKMASITRAAIKALRFYKHIVQCVEKFILRCPPQLKLPGLYVIDAIVRQSKYYYQDKDVYGPRFMRNLVNVFLSVLQCDDKDKSMIPRVLYLWQRGNVFPEDVIQVLQNVVADPNNAEVVQKAIQTVANAVNRMSKLSNSNTQSTKP-ELIETANSLCEVPSNKVISN------------------PVQRPTSAEMQLYQLQALQRKITEQSALLNQDKMIDPEVLSQLRILMTELTR--------RTEEAAMQLADGATEQEMNVIDPHLLARLQAMVDTLIQT 283

HSP 2 Score: 142.895 bits (359), Expect = 3.414e-31
Identity = 73/170 (42.94%), Postives = 107/170 (62.94%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEF--GAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKVAWAPNKGVKDDKEF-KDCWIEQEGCTYIHIEQFPINRITEVT--------DGGAYLDEDSLTD-ELRQAIRQFEQQKAEALARGMGP 1857
            +P LR+  +GI+S TVFIGHLHK ++ES+L++LC E   G + + N IPPRGCAFVTF  R++AY+A  +M++    GR++KVAWAPN+G+K+ + + +  W  +EGCTY+     P+  +T++T        DG   +DEDS+ D  LR  I          L+  MGP
Sbjct:  496 LPTLRSDHMGILSHTVFIGHLHKQLAESRLQALCAEVAEGPVVDCNFIPPRGCAFVTFATRRAAYRAVTQMDQSTMNGRQIKVAWAPNRGIKEHESYCRAYWDVEEGCTYL-----PLAEVTKLTRPQLDALLDGYGEVDEDSVADARLRDLI----------LSPSMGP 650

[Close]

BLAST of Ctd sr related rna binding protein vs. TrEMBL
Match: A0A4S2LYD4 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_003995 PE=4 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.837e-55
Identity = 138/346 (39.88%), Postives = 193/346 (55.78%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYCDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQASTIVSKLVNEWNVQRRKP---------EEKLETFMPHHELCNHDIISKNEGGLIDSITKLLTRFHAETGQDVSAEINQIQILHKKIVEQSALLAQGQMIDADTLSQLHQSMEELTXXXXXXXXVQQSKLAMLATDDKEHFNEAITDMEFVEQLQQMVDTLGQTXXXXXXXXXXXXXKAKS---VSNHSGDGVENVTEDSD 1080
            ME V  FN EL S+ E  LPVSR KM+ IT++A+KA+KFYKHVVQSVEKFI +C  + K+PGLYVIDA+VRQS+  Y DKDV+ PRFMRN+V  FL L QC+ KD   + RVL LWQ++ VFP  ++++L  ++ +P N D +  A+ +++  + + + + R            E ++   P   +C          G+ ++ T+LL                Q+Q++ +KI EQSALL    MID +  SQL   M +L ++       ++   A LA    E    ++ D  F+ +LQ MVDTL QTRALQE L Q      +    VS HSG  V    E  D
Sbjct:    1 MEYVTAFNAELNSLKETPLPVSRKKMASITRAALKAIKFYKHVVQSVEKFIIRCPSELKIPGLYVIDAVVRQSQSFYQDKDVYGPRFMRNLVAVFLSLLQCEEKDKPMISRVLYLWQRSSVFPLPIIQALQNVLNDPDNQDVVQNANNLIASAITQEDNKARAHASSEITGHVAENMKDTGPDGRICT---------GVSNAQTQLL----------------QLQVMQRKIAEQSALLNHSGMIDPEVRSQLRTLMSQLNQR-------REEAEAQLAQGKGEE-ELSVIDPSFLARLQAMVDTLAQTRALQERLNQGRIDTQQHQSLVSGHSGSFVGQAEECGD 313

HSP 2 Score: 139.813 bits (351), Expect = 5.834e-30
Identity = 69/150 (46.00%), Postives = 101/150 (67.33%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEF--GAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKVAWAPNKGVKDDKEF-KDCWIEQEGCTYIHIEQFPINRIT-----EVTDGGAYLDEDSLTD-ELRQAI 1806
            MP +    V I+S T+FIGHLHK ++ES+L++LC E   G + E N IPPRGCAFVTF  R++A++A  +M++ K  GR++KVAWAPN+GVK ++ + K+ W   EGCTY+ +E+  I ++T     ++  G   +DEDS+ D  LR  I
Sbjct:  492 MPRVLANHVTILSHTIFIGHLHKQLAESRLKNLCVEVAGGQVVECNFIPPRGCAFVTFSTRRAAHRALTQMDQSKMNGRQIKVAWAPNRGVKSNEAYMKNYWDPVEGCTYLPVEE--ITKLTRPKLDQILAGHGEIDEDSVADPRLRDLI 639

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BLAST of Ctd sr related rna binding protein vs. TrEMBL
Match: A0A4Z2DQQ0 (Protein SCAF8 OS=Schistosoma japonicum OX=6182 GN=EWB00_010246 PE=4 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.268e-54
Identity = 128/305 (41.97%), Postives = 185/305 (60.66%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYCDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQASTIVSK-----LVNEWNVQRRKPEEKLETFMPHHELCNHDIISKNEGGLIDSITKLLTRFHAETGQDVSAEINQIQILHKKIVEQSALLAQGQMIDADTLSQLHQSMEELTXXXXXXXXVQQSKLAMLATDDKEHFNEAITDMEFVEQLQQMVDTLGQT 978
            ME+V+ FN EL+S+ + +LPVSR KM+ ITK+AM+ALKFYKHVVQSVEKFIAKCS +YKVPGLYVIDAIVRQSK+ Y +KDV+ PRF+RNIV  F+ L  C  KD   L R+L LWQ++ VFP +++ +L  +V  P +S  + +A  I+++     L+ +       P +  E  +P  E C    +SK +  +  S++++ +  + +       ++ Q+Q L KKI EQS LL Q Q ID + L+Q+   M ELT         + +   +    + E  N  + D   + ++Q MVDTL  T
Sbjct:    1 MELVSAFNTELRSLADVQLPVSRAKMASITKAAMRALKFYKHVVQSVEKFIAKCSPEYKVPGLYVIDAIVRQSKYFYREKDVYGPRFLRNIVPVFISLMNCVEKDRPMLMRMLYLWQKSSVFPDEVINALCNVVSNPESSQVVEKAKEIINESLSDSLIKQTITNNSIPSQAAE-ILPTAESC----VSKTDNTI--SVSEITSDCN-QKNTSAKVQLVQLQALQKKIAEQSTLLNQEQTIDPEVLTQIQILMSELT------RRAEAAAAQLADEQNNEDLN--VIDPNLLARIQSMVDTLAHT 289

HSP 2 Score: 137.502 bits (345), Expect = 3.598e-29
Identity = 72/190 (37.89%), Postives = 117/190 (61.58%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEF--GAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKVAWAPNKGVKDDKEF-KDCWIEQEGCTYIHIEQFPINRIT-----EVTDGGAYLDEDSLTDELRQAIRQFEQQKAEALARGMGPSSVEAMISVAAEVANKKIPLLNTS 1929
            +P L+   VGI+S TVFIGHLHK ++ESKL +LC E   G + E N IPPRGCAFVTF  R++A++A  +M++    GRE+KVAWAPN G+K  +++    W   EGCTY+ +E+  + ++T     ++  G   +DE+SL D   + +      +++ L+  +   +V+++  +   +A++K  + N S
Sbjct:  584 LPTLKPDHVGILSHTVFIGHLHKQLAESKLTALCSEVTEGQVMECNFIPPRGCAFVTFATRRAAHRAVIQMDQSSMSGREIKVAWAPNLGIKSREDYLTQYWDADEGCTYLPVEE--VVKLTRPQFDDLLAGCGEVDEESLVDPRLRGLIMSNSDRSKTLS--IDSPNVKSVKKLQTTLASQKSTISNIS 769

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BLAST of Ctd sr related rna binding protein vs. TrEMBL
Match: A0A3S5C111 (CID domain-containing protein (Fragment) OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS21758 PE=4 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.248e-54
Identity = 113/233 (48.50%), Postives = 152/233 (65.24%), Query Frame = 1

Query:  106 ELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYCDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQASTIVSKLVNEWNVQRRKPEEKLETFMPHHELCNHDIISKNEGGLIDSITKLLTRFHAETGQDV--SAEINQIQILHKKIVEQSALLAQGQMIDADT 798
            +L S+ + +LPVSR KM+ ITK+AM+ALKFYKHVVQSVEKFI+KC+ +YKVPGLYVIDAIVRQSKH Y +KD++ PRFMRN+V  F+ LS+C   D   + RVL+LW++  VFP  L++ LL LV +  N+  I +       LV E+N ++ K  E      P         +S N G L +S+ +LL+  H + G  V  S +I+Q+  L +KI E SA L QGQMI+ D 
Sbjct:    3 KLHSLHKVQLPVSRQKMASITKAAMRALKFYKHVVQSVEKFISKCAPEYKVPGLYVIDAIVRQSKHFYNEKDLYGPRFMRNVVPIFVSLSKCGPSDKPQIIRVLQLWKKTDVFPNILIQGLLSLVSDSENTTLIQE-----DILVAEYNAKKSKLAEACPDGNPQ--------LSGN-GDLANSVNRLLS--HMQQGASVAPSNQIDQLLELQRKISECSAPLMQGQMIEPDV 219

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BLAST of Ctd sr related rna binding protein vs. TrEMBL
Match: A0A183JN60 (CID domain-containing protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS4145 PE=4 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.894e-53
Identity = 111/255 (43.53%), Postives = 167/255 (65.49%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYCDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQASTIVSKLVNEWNVQRRKPEEKLETFMPHHELCNHDIISKNEGGLIDSITKLLTRFHAETGQ-DVSAEI--NQIQILHKKIVEQSALLAQGQMIDADTLSQLHQSMEELT 834
            M++V  FN ELKS+ + +LPVSR KM+ IT++A+KALK+YKHVVQ VEKFIAKCS +YKVPGLYVIDAIVRQS++ Y +KDV+ PRF+RN+V  F+ L  C+ KD   L R+L LWQ++ VFP +++++L  ++ +P N   + +A  ++ + +N  + ++   E  + +          + +S+++  +  S         ++  Q + SA++   Q+Q L KKI EQSALL Q Q ID + L+Q+H  M ELT
Sbjct:    1 MDLVAAFNTELKSLTDSQLPVSRAKMASITRAAIKALKYYKHVVQIVEKFIAKCSPEYKVPGLYVIDAIVRQSQYFYREKDVYGPRFLRNLVPVFISLMNCNEKDKPMLMRMLYLWQKSSVFPDEVIKALCGVISDPKNPQVVGKAKEVIIESLNNSSTKQIIIESSVPSQATEIPPTVDNCVSRDDNAVSAS------EIASDCAQRNTSAKVQLLQLQALQKKIAEQSALLNQEQTIDPEVLTQIHILMSELT 249

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BLAST of Ctd sr related rna binding protein vs. Ensembl Cavefish
Match: ENSAMXT00000043667.1 (pep primary_assembly:Astyanax_mexicanus-2.0:9:35572709:35600137:-1 gene:ENSAMXG00000043743.1 transcript:ENSAMXT00000043667.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 171.4 bits (433), Expect = 4.598e-49
Identity = 86/152 (56.58%), Postives = 110/152 (72.37%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYE-PTNSDKILQASTIV 528
            ME V  FN EL S+ E K P+S+ KM+ ITKSA+KA+KFYKHVVQSVEKFI KC  +YKVPGLYVID+IVRQS+HQ+  +KDVF PRF +NI+ TF  L +C S D   + RVL LWQ+N VF +D+++ LL++    P  S   + AS+ V
Sbjct:    1 MEAVKAFNGELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSKNIINTFQNLYRCPSDDKSKIVRVLNLWQKNSVFKSDIIQPLLDMAAGLPPPSVTPVTASSAV 152

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BLAST of Ctd sr related rna binding protein vs. Ensembl Cavefish
Match: scaf4a (SR-related CTD associated factor 4 [Source:NCBI gene;Acc:103037277])

HSP 1 Score: 166.392 bits (420), Expect = 8.702e-42
Identity = 77/134 (57.46%), Postives = 100/134 (74.63%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLEL 477
            M+ VN FN EL S+++ K P+SR KM  ITKSA+KA+K YKHVV  VEKFI KC  +YKVPGLYV+D+IVRQS+HQ+  DKDVF PRF +NI  TF  L  C ++D   + RVL LWQ+NGVF  ++++ LL++
Sbjct:    1 MDAVNAFNHELFSLMDSKPPISRAKMISITKSAIKAIKLYKHVVLIVEKFIKKCKPEYKVPGLYVVDSIVRQSRHQFGADKDVFGPRFTKNITGTFENLCLCPTEDRSKIVRVLNLWQKNGVFKIEVIQPLLDM 134

HSP 2 Score: 98.5969 bits (244), Expect = 1.431e-20
Identity = 51/147 (34.69%), Postives = 81/147 (55.10%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFE 1818
            +P ++   + + S T+++G L K   +  +  L EEFG IE  NMIPPRGCA++    R+ A++A  K++    K   + +K+AWA NKG+K   EFK  W  + G TYI   +  +  + +  +GG  LD D+L    + A  + E
Sbjct:  469 LPLIKPDTLSVCSTTLWVGQLDKRTQQQDVACLLEEFGQIESINMIPPRGCAYIVMVHRQDAFRALQKLSRGTYKVNQKAIKIAWALNKGIK--SEFKQYWDVELGVTYIPWSKLKVEDLEDFKEGGV-LDTDTLCPVWKGAHGEME 612

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BLAST of Ctd sr related rna binding protein vs. Ensembl Cavefish
Match: scaf4b (SR-related CTD-associated factor 4b [Source:ZFIN;Acc:ZDB-GENE-050506-42])

HSP 1 Score: 155.221 bits (391), Expect = 1.272e-38
Identity = 71/134 (52.99%), Postives = 97/134 (72.39%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLEL 477
            M+ V  FN E+ S+++ K P+SR KM  ITK+ +KA+K YKHVVQ +EKFI +C  + KVPGLYV+D+I+RQS+HQ+  DKDVF PRF++N+  TF  L QC   D   + RVL LWQ+N VF  D+++ LL+L
Sbjct:    1 MDAVKAFNVEMLSMMDMKPPISRAKMMSITKAGIKAIKLYKHVVQIIEKFIKRCGPELKVPGLYVVDSIIRQSRHQFGEDKDVFGPRFLKNMNETFQSLYQCPPDDKAKILRVLNLWQKNSVFGMDVIQPLLDL 134

HSP 2 Score: 100.523 bits (249), Expect = 2.814e-21
Identity = 53/137 (38.69%), Postives = 73/137 (53.28%), Query Frame = 1

Query: 1387 PYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDE 1791
            P  + + + + S T++IG L K   +  + SL EEFG +E  NMIPPRGCA+V    R+ AY A  K++    K   +  K+AWA NKGV  +  FK  W    G TYI   +     I  + +GG  LD+DS   E
Sbjct:  553 PSTKRETLTVCSTTLWIGQLDKKTQQQDVTSLIEEFGQVESVNMIPPRGCAYVVMVHRQDAYTALTKLSRGSAKINHKPFKIAWALNKGV--NSRFKKYWDVDLGVTYIPWSKLKTAEILGLREGGT-LDQDSFKPE 686

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BLAST of Ctd sr related rna binding protein vs. Ensembl Cavefish
Match: ENSAMXT00000042091.1 (pre-mRNA-splicing factor RBM22-like [Source:NCBI gene;Acc:103042719])

HSP 1 Score: 55.0694 bits (131), Expect = 2.213e-7
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 1

Query: 1426 TVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAK-MNELKFEGRELKVAWAPNKGVKDDKEFKDCWIE 1686
            T++IG L +++++S+LRS   +FG I    ++  + CAF+ F  R++A  A  K  N+L   GR L V W  ++  K  KE K+ + E
Sbjct:  233 TLYIGGLGENITDSELRSHFYQFGEIRTITLVQRQQCAFIQFATRQAAELAAEKSFNKLIVNGRRLTVKWGRSQAAK-SKEIKEGYSE 319

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BLAST of Ctd sr related rna binding protein vs. Ensembl Cavefish
Match: ENSAMXT00000019080.2 (pre-mRNA-splicing factor RBM22-like [Source:NCBI gene;Acc:103042719])

HSP 1 Score: 53.9138 bits (128), Expect = 4.251e-7
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 1

Query: 1426 TVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAK-MNELKFEGRELKVAWAPNKGVKDDKEFKDCWIE 1686
            T++IG L +++++S+LRS   +FG I    ++  + CAF+ F  R++A  A  K  N+L   GR L V W  ++  K  KE K+ + E
Sbjct:  233 TLYIGGLGENITDSELRSHFYQFGEIRTITLVQRQQCAFIQFATRQAAELAAEKSFNKLIVNGRRLTVKWGRSQAAK-SKEIKEGYSE 319

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BLAST of Ctd sr related rna binding protein vs. Ensembl Sea Lamprey
Match: SCAF8 (SR-related CTD associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959])

HSP 1 Score: 167.548 bits (423), Expect = 1.703e-43
Identity = 78/135 (57.78%), Postives = 102/135 (75.56%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELV 480
            ME V  FNKEL S+ E K P+SR KM+ +TKSA+KA+K YKHVVQSVEKFI KC  +YKVPGLYVID+IVRQS+HQ+  ++DVF PRF +N+  TF  L +C S D   + RVL LWQ+N VF +++++ LL++ 
Sbjct:    1 MEAVKCFNKELTSLYESKPPISRAKMTQLTKSAIKAIKLYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGTERDVFAPRFAKNLTNTFQNLYRCPSDDKSRIVRVLNLWQKNNVFGSEIIQPLLDMA 135

HSP 2 Score: 108.612 bits (270), Expect = 1.352e-24
Identity = 52/135 (38.52%), Postives = 77/135 (57.04%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTD 1788
             P +R   + + S T+++G + K  ++  + +L EE+G IE  NMIPPRGCA+V   +R  A +A  K+N+ K   + +K+AWAPNKGVK   E+K  W  + G TYI  E+     +   TDGG    E   +D
Sbjct:  464 FPPMRPNALSVCSTTLWLGQIDKRTNQQDILNLFEEYGQIESINMIPPRGCAYVCMVQRPDAVRALQKLNKGKMNSKSIKIAWAPNKGVKS--EYKQYWDVETGVTYIPWERVKREHLNLFTDGGVIDGETMCSD 596

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BLAST of Ctd sr related rna binding protein vs. Ensembl Sea Lamprey
Match: rbm22 (RNA binding motif protein 22 [Source:NCBI gene;Acc:406495])

HSP 1 Score: 56.9954 bits (136), Expect = 7.418e-9
Identity = 27/81 (33.33%), Postives = 45/81 (55.56%), Query Frame = 1

Query: 1426 TVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAK-MNELKFEGRELKVAWAPNKGVKDDKE 1665
            T+++G L   + E++LR+   +FG +    ++P + CAFV F  R SA +A  K  N+L   GR L + W  ++G    +E
Sbjct:  143 TLYVGGLDDSIGETQLRNHFYQFGELRSVTVVPRQQCAFVQFTTRHSAEQAADKSFNKLIINGRRLNIKWGRSQGAPRPRE 223

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BLAST of Ctd sr related rna binding protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002852.1 (pep scaffold:Pmarinus_7.0:GL477021:232626:260651:-1 gene:ENSPMAG00000002591.1 transcript:ENSPMAT00000002852.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 50.0618 bits (118), Expect = 8.588e-7
Identity = 26/66 (39.39%), Postives = 40/66 (60.61%), Query Frame = 1

Query: 1429 VFIGHLHKHVSESKLRSLCEEFGAIEEFNMI------PP--RGCAFVTFEKRKSAYKACAKMNELK 1602
            +F+G + +  SE +LR L E+FG + E N++      PP  RGC FVTF  RK+A +A   ++ +K
Sbjct:   54 MFVGQIPRSWSEKELRDLFEQFGPVYEINIVRDRTQKPPQSRGCCFVTFYTRKAALEAQNALHNIK 119

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BLAST of Ctd sr related rna binding protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007375.1 (pep scaffold:Pmarinus_7.0:GL478911:2009:38506:1 gene:ENSPMAG00000006638.1 transcript:ENSPMAT00000007375.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 49.2914 bits (116), Expect = 2.488e-6
Identity = 24/66 (36.36%), Postives = 40/66 (60.61%), Query Frame = 1

Query: 1429 VFIGHLHKHVSESKLRSLCEEFGAIEEFNMI--------PPRGCAFVTFEKRKSAYKACAKMNELK 1602
            +F+G + +   ES+LR L E+FGA+ E N++          RGC FVT+  RK+A +A + ++ +K
Sbjct:   19 MFVGQIPRSWGESELRELFEQFGAVHEVNVLRDRTQTPAVSRGCCFVTYCTRKAALEAQSSLHNIK 84

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BLAST of Ctd sr related rna binding protein vs. Ensembl Yeast
Match: PUB1 (Poly (A)+ RNA-binding protein; abundant mRNP-component protein that binds mRNA and is required for stability of many mRNAs; component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; implicated in regulation of translation; carries Q/N-rich domain at C- terminus, identified as candidate prion; human homolog Tia1 is critical for normal synaptic plasticity; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000004961])

HSP 1 Score: 53.9138 bits (128), Expect = 7.619e-8
Identity = 20/70 (28.57%), Postives = 35/70 (50.00%), Query Frame = 1

Query: 1426 TVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKVAWA 1635
            T +IG++    +E+ L  L + FG I +F   P +GC F+ ++  + A      +    F+GR L+  W 
Sbjct:  342 TAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 411

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BLAST of Ctd sr related rna binding protein vs. Ensembl Nematostella
Match: EDO31981 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SWC6])

HSP 1 Score: 54.299 bits (129), Expect = 1.344e-7
Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = 1

Query: 1426 TVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAK-MNELKFEGRELKVAWAPNKG 1647
            T+++G L   V+E  LR    +FG +   +M+P + CAFV F  R +A  A  +  N+L  +GR LK+ W  ++G
Sbjct:  234 TLYVGGLEGKVTEQDLRDHFYQFGELRSISMVPRQNCAFVCFTSRAAAEAAADRSFNKLILKGRRLKIMWGKSQG 308

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BLAST of Ctd sr related rna binding protein vs. Ensembl Nematostella
Match: EDO36859 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SHB5])

HSP 1 Score: 52.373 bits (124), Expect = 1.987e-7
Identity = 29/88 (32.95%), Postives = 43/88 (48.86%), Query Frame = 1

Query: 1381 WMPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMI------PPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKV 1626
            W P       G   KT+FIG ++   SESKLR   E +G I+  +M+       PRG AF+ +E  +  + A    +  K +GR + V
Sbjct:   89 WDPQTDPNAYGDAFKTLFIGRINYDTSESKLRREMEMYGPIKHISMVYNSKASKPRGYAFIEYEHERDMHAAYKHADGKKIDGRRIVV 176

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Nematostella
Match: EDO35562 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SL69])

HSP 1 Score: 46.2098 bits (108), Expect = 1.332e-6
Identity = 22/62 (35.48%), Postives = 32/62 (51.61%), Query Frame = 1

Query: 1423 KTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMI-----PPRGCAFVTFEKRKSAYKACAKMN 1593
            + +F+G + KH  E  LR +   FG IEE  ++       +GCAF+ F  R  A  A A M+
Sbjct:    2 RKLFVGMISKHAKEEDLRVMFSPFGTIEELTVLRNADSTSKGCAFIKFANRMQAQNAIATMH 63

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Nematostella
Match: EDO45951 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RRH3])

HSP 1 Score: 48.521 bits (114), Expect = 2.376e-6
Identity = 27/80 (33.75%), Postives = 42/80 (52.50%), Query Frame = 1

Query: 1423 KTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMI---------PPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKVAWA 1635
            + ++IG+L K +SE  +  + ++FG IE F  +          PRG  FV F+K++ A KA   +N+     R L V WA
Sbjct:   23 RKLWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKALRGLNKKIVLSRALVVDWA 102

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Nematostella
Match: EDO33926 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQW0])

HSP 1 Score: 48.9062 bits (115), Expect = 7.193e-6
Identity = 25/98 (25.51%), Postives = 52/98 (53.06%), Query Frame = 1

Query: 1429 VFIGHLHKHVSESKLRSLCEEFGAIEEFNMI------PPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKVAWAPNKG------VKDDKEFKDCWIE 1686
            +++G LH +++E+ ++++ E FG ++   +I        +G  FV F + ++A +A  +MN  +  GR LK+     +G        DD+E++   +E
Sbjct:  217 LYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKIGPVTERGDSSAYSFLDDEEYEKGGVE 314

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Medaka
Match: SCAF8 (SR-related CTD associated factor 8 [Source:NCBI gene;Acc:101159873])

HSP 1 Score: 175.637 bits (444), Expect = 1.290e-44
Identity = 82/150 (54.67%), Postives = 110/150 (73.33%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELV--YEPTNSDKILQAS 519
            ME V  FN EL S+ E + P+S+ KM+ ITKS +KA+KFYKHVVQSVEKFI KC  +YKVPGLYVID+IVRQS+HQ+  +KDVF PRF +NI+ TF +L +C S D   + RVL LWQ+N VF +D+++ LL++     P ++  +L +S
Sbjct:    1 MEAVKAFNNELYSLNEYRPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIILTFQHLYRCPSDDKSKIVRVLNLWQKNAVFKSDIIQPLLDMAAGIPPPSTTPVLPSS 150

HSP 2 Score: 105.916 bits (263), Expect = 9.275e-23
Identity = 51/142 (35.92%), Postives = 86/142 (60.56%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMN--ELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQA 1803
            +P +R++ + + S T+++G + K  ++  L +L EEFG IE  NMIPPRGCA++    R+ AY+A  K++    K   + +K+AWA NKGVK  +E+K  W    G TYI  E+  ++ +    +GG  +D++++ +E   A
Sbjct:  461 LPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKISSKIIKIAWALNKGVK--QEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGG-IIDQETVNEEWEAA 599

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Medaka
Match: scaf4a (SR-related CTD associated factor 4 [Source:NCBI gene;Acc:101172836])

HSP 1 Score: 164.851 bits (416), Expect = 2.716e-41
Identity = 77/134 (57.46%), Postives = 100/134 (74.63%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLEL 477
            M+ VN FN+EL S+++ K P+SR KM  ITKSA+KA+K YKHVVQ VEKFI KC  +YKV GLYV+D+IVRQS+HQ+  DKDVF PRF +NI  TF  L  C  +D   + RVL LWQ+NGVF  ++++ LL++
Sbjct:    1 MDAVNAFNQELFSLMDSKPPISRAKMISITKSAIKAMKLYKHVVQIVEKFIKKCKPEYKVAGLYVVDSIVRQSRHQFGPDKDVFGPRFTKNITGTFENLCLCPIEDRSKIVRVLNLWQKNGVFKIEVIQPLLDM 134

HSP 2 Score: 103.605 bits (257), Expect = 3.634e-22
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDE---LRQAIRQFEQ 1821
            +P  +N+ V I S T+++G L K   +  + SL EEFG IE  NMIPPRGCA++    R+ A++A  K++    K   + +K+AWA NKG+K   EFK  W  + G T I   +   +++ E+ +GG  LD ++L+ E   LR+ + Q E+
Sbjct:  451 LPPPKNEAVSICSTTLWVGQLDKRTQQQDVASLLEEFGQIESINMIPPRGCAYIVMMHRQDAFRALQKLSRGPYKVNQKTIKIAWALNKGIK--PEFKQYWDVELGVTCIPWSKVREDQLEELKEGG-MLDSETLSPEWVGLRKTLDQSEE 598

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Medaka
Match: scaf4b (splicing factor, arginine/serine-rich 15 [Source:NCBI gene;Acc:101174611])

HSP 1 Score: 160.999 bits (406), Expect = 1.450e-40
Identity = 77/145 (53.10%), Postives = 102/145 (70.34%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKIL 510
            ME VN FN EL S+++ K P+SR KM  +TK+A+KA+K YKHVVQ VEKFI KC  + KVPGLYV+D+IVRQS+HQ+  +KDVF PRF++N   TF YL  C   D   + RVL LWQ+NGVF  ++++ L+++    T S   L
Sbjct:    1 MEAVNAFNMELFSMIDMKPPISRAKMMSVTKAAIKAIKLYKHVVQIVEKFIKKCKPELKVPGLYVVDSIVRQSRHQFGVEKDVFGPRFLKNFADTFHYLFLCPEDDKNKILRVLNLWQKNGVFEMNILQPLMDMAASVTTSSPTL 145

HSP 2 Score: 96.6709 bits (239), Expect = 3.559e-20
Identity = 52/169 (30.77%), Postives = 86/169 (50.89%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAEALARGMGPSSVEAMISV 1884
            +P +++Q + + S T+++G L K   +S + SL EEFG IE  +MIPPRGCA++    R+ AY A  K++    K   + +K+AWA NKG+K     K  W  + G  YI   +  +  +    +GG  LD ++L  E +       Q     +  G+    V  ++ +
Sbjct:  396 LPSIKSQTLSVCSTTLWVGQLDKKTQQSDVTSLLEEFGQIESIHMIPPRGCAYIVMVHRQDAYTALKKLSRGSYKVNQKPVKIAWALNKGIK--SAHKKFWDVERGVCYIPWSKVKVEELESYREGG-MLDAETLNPEWKFGKELNHQAAVNGVLEGVPDDGVSTLVQM 561

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Medaka
Match: scaf4a (SR-related CTD associated factor 4 [Source:NCBI gene;Acc:101172836])

HSP 1 Score: 151.369 bits (381), Expect = 6.799e-37
Identity = 72/125 (57.60%), Postives = 93/125 (74.40%), Query Frame = 1

Query:  106 ELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYC-DKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLEL 477
            EL S+++ K P+SR KM  ITKSA+KA+K YKHVVQ VEKFI KC  +YKV GLYV+D+IVRQS+HQ+  DKDVF PRF +NI  TF  L  C  +D   + RVL LWQ+NGVF  ++++ LL++
Sbjct:  179 ELFSLMDSKPPISRAKMISITKSAIKAMKLYKHVVQIVEKFIKKCKPEYKVAGLYVVDSIVRQSRHQFGPDKDVFGPRFTKNITGTFENLCLCPIEDRSKIVRVLNLWQKNGVFKIEVIQPLLDM 303

HSP 2 Score: 102.834 bits (255), Expect = 7.373e-22
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDE---LRQAIRQFEQ 1821
            +P  +N+ V I S T+++G L K   +  + SL EEFG IE  NMIPPRGCA++    R+ A++A  K++    K   + +K+AWA NKG+K   EFK  W  + G T I   +   +++ E+ +GG  LD ++L+ E   LR+ + Q E+
Sbjct:  620 LPPPKNEAVSICSTTLWVGQLDKRTQQQDVASLLEEFGQIESINMIPPRGCAYIVMMHRQDAFRALQKLSRGPYKVNQKTIKIAWALNKGIK--PEFKQYWDVELGVTCIPWSKVREDQLEELKEGG-MLDSETLSPEWVGLRKTLDQSEE 767

[Close]

BLAST of Ctd sr related rna binding protein vs. Ensembl Medaka
Match: scaf4b (splicing factor, arginine/serine-rich 15 [Source:NCBI gene;Acc:101174611])

HSP 1 Score: 149.058 bits (375), Expect = 1.117e-36
Identity = 73/150 (48.67%), Postives = 103/150 (68.67%), Query Frame = 1

Query:   67 IFSIMEVVNIFN-KELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQY-CDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKIL 510
            +F+  ++   FN  +L S+++ K P+SR KM  +TK+A+KA+K YKHVVQ VEKFI KC  + KVPGLYV+D+IVRQS+HQ+  +KDVF PRF++N   TF YL  C   D   + RVL LWQ+NGVF  ++++ L+++    T S   L
Sbjct:   26 VFNWTKINVFFNIPQLFSMIDMKPPISRAKMMSVTKAAIKAIKLYKHVVQIVEKFIKKCKPELKVPGLYVVDSIVRQSRHQFGVEKDVFGPRFLKNFADTFHYLFLCPEDDKNKILRVLNLWQKNGVFEMNILQPLMDMAASVTTSSPTL 175

HSP 2 Score: 96.6709 bits (239), Expect = 4.284e-20
Identity = 52/169 (30.77%), Postives = 86/169 (50.89%), Query Frame = 1

Query: 1384 MPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNE--LKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAEALARGMGPSSVEAMISV 1884
            +P +++Q + + S T+++G L K   +S + SL EEFG IE  +MIPPRGCA++    R+ AY A  K++    K   + +K+AWA NKG+K     K  W  + G  YI   +  +  +    +GG  LD ++L  E +       Q     +  G+    V  ++ +
Sbjct:  426 LPSIKSQTLSVCSTTLWVGQLDKKTQQSDVTSLLEEFGQIESIHMIPPRGCAYIVMVHRQDAYTALKKLSRGSYKVNQKPVKIAWALNKGIK--SAHKKFWDVERGVCYIPWSKVKVEELESYREGG-MLDAETLNPEWKFGKELNHQAAVNGVLEGVPDDGVSTLVQM 591

[Close]

BLAST of Ctd sr related rna binding protein vs. Planmine SMEST
Match: SMESG000038716.1 (SMESG000038716.1)

HSP 1 Score: 1400.57 bits (3624), Expect = 0.000e+0
Identity = 778/780 (99.74%), Postives = 778/780 (99.74%), Query Frame = 1

Query:   79 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYCDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQASTIVSKLVNEWNVQRRKPEEKLETFMPHHELCNHDIISKNEGGLIDSITKLLTRFHAETGQDVSAEINQIQILHKKIVEQSALLAQGQMIDADTLSQLHQSMEELTXXXXXXXXVQQSKLAMLATDDKEHFNEAITDMEFVEQLQQMVDTLGQTXXXXXXXXXXXXXKAKSVSNHSGDGVENVTEDSDFRTEIKIEASDEIIIDHSQLGSDADVDFRFISNSLPHNYENMNSNPSMTAMSNEKMSRSPSNASHKRKRSNSETXXXXXXXXXXXXXXXXXXXXXXXXXXWMPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAEALARGMGPSSVEAMISVAAEVANKKIPLLNTSEKPPEINSSFFTHYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQIPLPEIXXXXXXXXXXXXXXXTEESAVTTQSNWEASNASMEDPNVSTSLSVQSPFSPQAVPSRLGEGHMVPPFLRPGFRNPLMRGRVYRPPMRFSRHPPPGFPAFRPNIISRPPAPRF 2418
            MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYCDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQASTIVSKLVNEWNVQRRKPEEKLETFMPHHELCNHDIISKNEGGLIDSITKLLTRFHAETGQDVSAEINQIQILHKKIVEQSALLAQGQMIDADTLSQLHQSMEELTKKAAKAAAVQQSKLAMLATDDKEHFNEAITDMEFVEQLQQMVDTLGQTRALQEELRQALQLKAKSVSNHSGDGVENVTEDSDFRTEIKIEASDEI IDHSQLGSDADVDFRFISNSLPHNYENMNSNPSMTAMSNEKMSRSPSNASHKRKRSNSETRYSKRKRSRSKDYRKKEKKLRETRKKWMPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRI EVTDGGAYLDEDSLTDELRQAIRQFEQQKAEALARGMGPSSVEAMISVAAEVANKKIPLLNTSEKPPEINSSFFTHYPAPPPPIMSTIIPYPPPPHMFIPSSLPPPHQIPLPEISVPVSVNSVPHSVASTEESAVTTQSNWEASNASMEDPNVSTSLSVQSPFSPQAVPSRLGEGHMVPPFLRPGFRNPLMRGRVYRPPMRFSRHPPPGFPAFRPNIISRPPAPRF
Sbjct:    1 MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKFIAKCSCDYKVPGLYVIDAIVRQSKHQYCDKDVFVPRFMRNIVTTFLYLSQCDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQASTIVSKLVNEWNVQRRKPEEKLETFMPHHELCNHDIISKNEGGLIDSITKLLTRFHAETGQDVSAEINQIQILHKKIVEQSALLAQGQMIDADTLSQLHQSMEELTKKAAKAAAVQQSKLAMLATDDKEHFNEAITDMEFVEQLQQMVDTLGQTRALQEELRQALQLKAKSVSNHSGDGVENVTEDSDFRTEIKIEASDEIFIDHSQLGSDADVDFRFISNSLPHNYENMNSNPSMTAMSNEKMSRSPSNASHKRKRSNSETRYSKRKRSRSKDYRKKEKKLRETRKKWMPYLRNQCVGIISKTVFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKACAKMNELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPINRIIEVTDGGAYLDEDSLTDELRQAIRQFEQQKAEALARGMGPSSVEAMISVAAEVANKKIPLLNTSEKPPEINSSFFTHYPAPPPPIMSTIIPYPPPPHMFIPSSLPPPHQIPLPEISVPVSVNSVPHSVASTEESAVTTQSNWEASNASMEDPNVSTSLSVQSPFSPQAVPSRLGEGHMVPPFLRPGFRNPLMRGRVYRPPMRFSRHPPPGFPAFRPNIISRPPAPRF 780

The following BLAST results are available for this feature:

BLAST of Ctd sr related rna binding protein vs. Ensembl Human
BLAST of Ctd sr related rna binding protein vs. Ensembl Celegans
BLAST of Ctd sr related rna binding protein vs. Ensembl Fly
BLAST of Ctd sr related rna binding protein vs. Ensembl Zebrafish
BLAST of Ctd sr related rna binding protein vs. Ensembl Xenopus
BLAST of Ctd sr related rna binding protein vs. Ensembl Mouse
BLAST of Ctd sr related rna binding protein vs. UniProt/SwissProt
BLAST of Ctd sr related rna binding protein vs. TrEMBL
BLAST of Ctd sr related rna binding protein vs. Ensembl Cavefish
BLAST of Ctd sr related rna binding protein vs. Ensembl Sea Lamprey
BLAST of Ctd sr related rna binding protein vs. Ensembl Yeast
BLAST of Ctd sr related rna binding protein vs. Ensembl Nematostella
BLAST of Ctd sr related rna binding protein vs. Ensembl Medaka
BLAST of Ctd sr related rna binding protein vs. Planmine SMEST

BLAST of Ctd sr related rna binding protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
SCAF4	2.764e-45	55.70	SR-related CTD associated factor 4 [Source:HGNC Sy...	[more]
SCAF4	2.830e-45	55.70	SR-related CTD associated factor 4 [Source:HGNC Sy...	[more]
SCAF8	5.628e-42	57.46	SR-related CTD associated factor 8 [Source:HGNC Sy...	[more]
SCAF8	6.134e-42	57.04	SR-related CTD associated factor 8 [Source:HGNC Sy...	[more]
SCAF8	4.881e-38	56.80	SR-related CTD associated factor 8 [Source:HGNC Sy...	[more]

BLAST of Ctd sr related rna binding protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3


Match Name	E-value	Identity	Description
nrd-1	3.748e-24	45.45	NRD (Yeast Nuclear pre-mRNA Down-regulation) homol...	[more]
rnp-7	3.350e-6	32.00	RNP (RRM RNA binding domain) containing [Source:U...	[more]
rnp-7	3.350e-6	32.00	RNP (RRM RNA binding domain) containing [Source:U...	[more]

BLAST of Ctd sr related rna binding protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
CG4266	1.636e-43	55.56	gene:FBgn0034598 transcript:FBtr0310422	[more]
CG4266	4.943e-42	55.56	gene:FBgn0034598 transcript:FBtr0342871	[more]
CG4266	5.180e-42	55.56	gene:FBgn0034598 transcript:FBtr0071629	[more]
CG4266	7.683e-42	55.56	gene:FBgn0034598 transcript:FBtr0113100	[more]
CG14641	2.464e-7	31.03	gene:FBgn0037220 transcript:FBtr0078985	[more]

BLAST of Ctd sr related rna binding protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
scaf4a	4.402e-43	58.21	SR-related CTD-associated factor 4a [Source:ZFIN;A...	[more]
scaf4b	1.070e-38	46.71	SR-related CTD-associated factor 4b [Source:ZFIN;A...	[more]
scaf4a	3.847e-38	58.33	SR-related CTD-associated factor 4a [Source:ZFIN;A...	[more]
scaf4a	3.847e-38	58.33	SR-related CTD-associated factor 4a [Source:ZFIN;A...	[more]
scaf4b	1.123e-37	49.28	SR-related CTD-associated factor 4b [Source:ZFIN;A...	[more]

BLAST of Ctd sr related rna binding protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
SCAF4	3.143e-44	54.00	SR-related CTD associated factor 4 [Source:NCBI ge...	[more]
SCAF4	3.217e-44	54.00	SR-related CTD associated factor 4 [Source:NCBI ge...	[more]
SCAF8	7.888e-42	56.30	SR-related CTD associated factor 8 [Source:NCBI ge...	[more]
SCAF4	7.102e-41	58.87	SR-related CTD associated factor 4 [Source:NCBI ge...	[more]
SCAF4	1.385e-39	53.57	SR-related CTD associated factor 4 [Source:NCBI ge...	[more]

BLAST of Ctd sr related rna binding protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Scaf4	9.176e-46	55.70	SR-related CTD-associated factor 4 [Source:MGI Sym...	[more]
Scaf4	9.434e-46	55.70	SR-related CTD-associated factor 4 [Source:MGI Sym...	[more]
Scaf4	1.050e-45	55.70	SR-related CTD-associated factor 4 [Source:MGI Sym...	[more]
Scaf8	5.335e-42	57.04	SR-related CTD-associated factor 8 [Source:MGI Sym...	[more]
Scaf8	5.607e-32	62.50	SR-related CTD-associated factor 8 [Source:MGI Sym...	[more]

BLAST of Ctd sr related rna binding protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q7TSH6\|SCAF4_MOUSE	6.418e-45	55.70	SR-related and CTD-associated factor 4 OS=Mus musc...	[more]
sp\|O95104\|SCAF4_HUMAN	1.327e-44	55.70	SR-related and CTD-associated factor 4 OS=Homo sap...	[more]
sp\|Q63627\|SCAF4_RAT	1.628e-44	58.16	SR-related and CTD-associated factor 4 OS=Rattus n...	[more]
sp\|Q9UPN6\|SCAF8_HUMAN	2.703e-41	57.46	SR-related and CTD-associated factor 8 OS=Homo sap...	[more]
sp\|Q6DID3\|SCAF8_MOUSE	3.732e-41	57.04	SR-related and CTD-associated factor 8 OS=Mus musc...	[more]

BLAST of Ctd sr related rna binding protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A4E0S1F6	4.492e-57	43.51	Protein SCAF8 OS=Fasciola hepatica OX=6192 GN=D915...	[more]
A0A4S2LYD4	9.837e-55	39.88	Uncharacterized protein OS=Opisthorchis felineus O...	[more]
A0A4Z2DQQ0	1.268e-54	41.97	Protein SCAF8 OS=Schistosoma japonicum OX=6182 GN=...	[more]
A0A3S5C111	4.248e-54	48.50	CID domain-containing protein (Fragment) OS=Protop...	[more]
A0A183JN60	1.894e-53	43.53	CID domain-containing protein OS=Schistosoma curas...	[more]

BLAST of Ctd sr related rna binding protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSAMXT00000043667.1	4.598e-49	56.58	pep primary_assembly:Astyanax_mexicanus-2.0:9:3557...	[more]
scaf4a	8.702e-42	57.46	SR-related CTD associated factor 4 [Source:NCBI ge...	[more]
scaf4b	1.272e-38	52.99	SR-related CTD-associated factor 4b [Source:ZFIN;A...	[more]
ENSAMXT00000042091.1	2.213e-7	35.23	pre-mRNA-splicing factor RBM22-like [Source:NCBI g...	[more]
ENSAMXT00000019080.2	4.251e-7	35.23	pre-mRNA-splicing factor RBM22-like [Source:NCBI g...	[more]

BLAST of Ctd sr related rna binding protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 4


Match Name	E-value	Identity	Description
SCAF8	1.703e-43	57.78	SR-related CTD associated factor 8 [Source:HGNC Sy...	[more]
rbm22	7.418e-9	33.33	RNA binding motif protein 22 [Source:NCBI gene;Acc...	[more]
ENSPMAT00000002852.1	8.588e-7	39.39	pep scaffold:Pmarinus_7.0:GL477021:232626:260651:-...	[more]
ENSPMAT00000007375.1	2.488e-6	36.36	pep scaffold:Pmarinus_7.0:GL478911:2009:38506:1 ge...	[more]

BLAST of Ctd sr related rna binding protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
PUB1	7.619e-8	28.57	Poly (A)+ RNA-binding protein; abundant mRNP-compo...	[more]

BLAST of Ctd sr related rna binding protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO31981	1.344e-7	36.00	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO36859	1.987e-7	32.95	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO35562	1.332e-6	35.48	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO45951	2.376e-6	33.75	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO33926	7.193e-6	25.51	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Ctd sr related rna binding protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
SCAF8	1.290e-44	54.67	SR-related CTD associated factor 8 [Source:NCBI ge...	[more]
scaf4a	2.716e-41	57.46	SR-related CTD associated factor 4 [Source:NCBI ge...	[more]
scaf4b	1.450e-40	53.10	splicing factor, arginine/serine-rich 15 [Source:N...	[more]
scaf4a	6.799e-37	57.60	SR-related CTD associated factor 4 [Source:NCBI ge...	[more]
scaf4b	1.117e-36	48.67	splicing factor, arginine/serine-rich 15 [Source:N...	[more]

BLAST of Ctd sr related rna binding protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1


Match Name	E-value	Identity	Description
SMESG000038716.1	0.000e+0	99.74	SMESG000038716.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30000117 ID=SMED30000117|Name=Ctd sr related rna binding protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2590bp
ATAATTTATTTAAAAATTTGTTATAATATATGAAACAATAAATTAATTTT
AAATAGCTAATGGTGGATATTTTCGATAATGGAAGTTGTTAATATATTTA
ATAAAGAGTTAAAGTCAATTCTGGAGTGCAAGCTCCCCGTATCACGACAT
AAAATGTCATTAATTACAAAATCAGCTATGAAAGCTTTAAAATTTTATAA
ACATGTCGTGCAAAGTGTTGAGAAATTTATTGCTAAATGCAGCTGTGATT
ATAAAGTTCCAGGTTTATATGTTATTGATGCCATAGTTCGTCAATCAAAA
CACCAATATTGTGATAAGGATGTTTTTGTCCCTCGATTTATGAGAAATAT
TGTTACCACATTTTTATATTTATCACAATGTGATTCTAAAGACCTTCAAT
CTTTAGAACGAGTTTTACGTTTATGGCAACAAAATGGTGTTTTTCCAACA
GATTTGGTCGAGTCTCTATTAGAGCTGGTCTATGAGCCAACAAATTCTGA
TAAAATACTACAAGCTAGTACCATTGTTTCTAAGCTGGTTAATGAATGGA
ACGTCCAACGAAGAAAGCCAGAGGAAAAGCTCGAAACGTTTATGCCACAT
CATGAATTATGTAACCACGACATTATATCTAAAAATGAAGGTGGTTTAAT
TGATTCAATCACGAAATTGTTAACCAGATTTCACGCTGAAACCGGTCAGG
ATGTTTCAGCGGAAATTAATCAAATTCAAATTTTGCATAAAAAAATCGTT
GAACAATCAGCATTATTAGCTCAAGGACAAATGATAGACGCAGACACATT
ATCTCAGTTACATCAATCAATGGAAGAATTAACGAAAAAGGCTGCCAAAG
CTGCAGCGGTTCAACAATCAAAATTGGCAATGTTAGCTACAGATGACAAA
GAACATTTCAATGAGGCAATAACCGATATGGAATTCGTTGAACAGTTGCA
ACAAATGGTAGACACTCTCGGTCAAACTCGGGCACTACAGGAAGAACTAC
GACAAGCACTGCAATTGAAAGCTAAATCTGTCAGTAATCACAGCGGTGAT
GGTGTAGAAAATGTAACCGAAGACAGCGATTTCCGGACAGAAATCAAGAT
TGAAGCCTCAGATGAAATAATTATCGATCATTCTCAACTGGGTAGCGATG
CAGACGTTGATTTTCGGTTCATCAGCAACTCATTGCCACACAACTATGAG
AACATGAACAGTAACCCAAGCATGACTGCAATGTCAAATGAAAAGATGTC
TAGATCTCCCAGCAATGCTTCACATAAACGAAAAAGGTCGAATTCCGAAA
CACGATATTCGAAACGAAAACGATCACGATCTAAGGATTATCGTAAAAAA
GAGAAAAAATTGCGAGAAACACGTAAAAAATGGATGCCATATTTACGGAA
TCAATGCGTTGGAATCATATCAAAAACAGTTTTCATAGGCCATTTACATA
AGCATGTATCGGAATCGAAATTACGCTCGTTATGCGAAGAATTTGGAGCG
ATTGAAGAATTTAATATGATTCCACCGAGAGGGTGTGCATTCGTTACATT
TGAAAAACGTAAAAGCGCCTACAAAGCCTGTGCAAAAATGAATGAGCTGA
AGTTTGAAGGCCGCGAATTAAAAGTAGCTTGGGCCCCGAACAAAGGAGTG
AAAGACGATAAAGAGTTTAAAGACTGCTGGATCGAACAAGAAGGCTGTAC
ATATATCCACATAGAGCAGTTTCCGATAAATAGGATAACTGAAGTGACAG
ATGGCGGGGCTTATCTCGATGAAGATTCTTTGACCGATGAATTGAGACAG
GCCATTCGACAATTTGAGCAACAGAAAGCAGAGGCCTTAGCTCGTGGAAT
GGGACCATCATCCGTTGAGGCAATGATTTCCGTTGCAGCTGAAGTGGCTA
ATAAGAAAATTCCATTGCTTAATACTTCTGAAAAGCCACCAGAAATCAAT
TCCTCGTTTTTCACTCATTATCCCGCTCCACCACCGCCGATCATGTCGAC
AATAATTCCATATCCTCCTCCTCCACACATGTTTATACCCAGCTCACTTC
CTCCTCCACATCAAATTCCTCTACCAGAAATATCAGTGCCAGTGTCCGTA
AACTCAGTTCCTCATTCTGTAGCTTCAACTGAAGAATCTGCTGTCACTAC
ACAAAGTAATTGGGAGGCGTCAAATGCATCGATGGAAGATCCAAATGTTT
CTACATCTTTATCAGTTCAATCTCCATTTTCTCCTCAAGCTGTGCCATCT
AGGCTAGGCGAGGGGCACATGGTGCCACCATTCTTGAGACCGGGCTTCAG
AAATCCTTTAATGAGGGGCCGGGTTTATCGGCCACCGATGCGTTTTTCAA
GACACCCCCCTCCCGGCTTCCCAGCGTTTCGTCCGAATATCATAAGCAGA
CCGCCTGCACCGAGATTTTAATGCACCTGTAAATGAATAATGTCCAATAA
AATTTCAAATTTGTTATTTTCTGTAAATTTTATGATAGTGCTTTAAATGA
AATTTATAATTGTCATTATTTATGAGGTTCTTTGAATTTATTAAATAAAC
ATTCTGATCCTGTTTCTTTTTTCTCATTGAATTATAAGCG

protein sequence of SMED30000117-orf-1

>SMED30000117-orf-1 ID=SMED30000117-orf-1|Name=SMED30000117-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=781bp
MEVVNIFNKELKSILECKLPVSRHKMSLITKSAMKALKFYKHVVQSVEKF
IAKCSCDYKVPGLYVIDAIVRQSKHQYCDKDVFVPRFMRNIVTTFLYLSQ
CDSKDLQSLERVLRLWQQNGVFPTDLVESLLELVYEPTNSDKILQASTIV
SKLVNEWNVQRRKPEEKLETFMPHHELCNHDIISKNEGGLIDSITKLLTR
FHAETGQDVSAEINQIQILHKKIVEQSALLAQGQMIDADTLSQLHQSMEE
LTKKAAKAAAVQQSKLAMLATDDKEHFNEAITDMEFVEQLQQMVDTLGQT
RALQEELRQALQLKAKSVSNHSGDGVENVTEDSDFRTEIKIEASDEIIID
HSQLGSDADVDFRFISNSLPHNYENMNSNPSMTAMSNEKMSRSPSNASHK
RKRSNSETRYSKRKRSRSKDYRKKEKKLRETRKKWMPYLRNQCVGIISKT
VFIGHLHKHVSESKLRSLCEEFGAIEEFNMIPPRGCAFVTFEKRKSAYKA
CAKMNELKFEGRELKVAWAPNKGVKDDKEFKDCWIEQEGCTYIHIEQFPI
NRITEVTDGGAYLDEDSLTDELRQAIRQFEQQKAEALARGMGPSSVEAMI
SVAAEVANKKIPLLNTSEKPPEINSSFFTHYPAPPPPIMSTIIPYPPPPH
MFIPSSLPPPHQIPLPEISVPVSVNSVPHSVASTEESAVTTQSNWEASNA
SMEDPNVSTSLSVQSPFSPQAVPSRLGEGHMVPPFLRPGFRNPLMRGRVY
RPPMRFSRHPPPGFPAFRPNIISRPPAPRF*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR000504	RRM_dom
IPR006569	CID_dom
IPR006903	RNA_pol_II-bd
IPR008942	ENTH_VHS
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **molecular function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding
GO:0003723	RNA binding
GO:0005515	protein binding
GO:0043175	RNA polymerase core enzyme binding

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus
GO:0005654	nucleoplasm
GO:0005681	spliceosomal complex
GO:0016363	nuclear matrix

Vocabulary: **biological process**
Term	Definition
GO:0006397	mRNA processing
GO:0008380	RNA splicing

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 241..261
None	No IPR available	COILS	Coil	Coil	coord: 565..589
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 384..428
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 405..428
None	No IPR available	PANTHER	PTHR15921	PRE-MRNA CLEAVAGE COMPLEX II	coord: 10..658
None	No IPR available	PANTHER	PTHR15921:SF7	PROTEIN SCAF8	coord: 10..658
None	No IPR available	CDD	cd16983	CID_SCAF8_like	coord: 7..133 e-value: 1.01705E-61 score: 201.687
None	No IPR available	CDD	cd12227	RRM_SCAF4_SCAF8	coord: 448..523 e-value: 9.63112E-33 score: 118.982
IPR006569	CID domain	SMART	SM00582	558neu5	coord: 6..135 e-value: 1.2E-25 score: 101.2
IPR006569	CID domain	PROSITE	PS51391	CID	coord: 1..138 score: 26.984
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 450..517 e-value: 1.5E-18 score: 77.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 451..515 e-value: 2.0E-14 score: 53.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 449..521 score: 15.545
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 373..530 e-value: 3.5E-24 score: 87.5
IPR006903	RNA polymerase II-binding domain	PFAM	PF04818	CTD_bind	coord: 59..122 e-value: 1.5E-14 score: 54.6
IPR008942	ENTH/VHS	GENE3D	G3DSA:1.25.40.90		coord: 1..137 e-value: 1.2E-49 score: 169.5
IPR008942	ENTH/VHS	SUPERFAMILY	SSF48464	ENTH/VHS domain	coord: 1..133
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 448..523