Ribonuclease P protein subunit p25-like

Overview
NameRibonuclease P protein subunit p25-like
Smed IDSMED30000050
Length (bp)568
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Ribonuclease P protein subunit p25-like (SMED30000050) t-SNE clustered cells

Violin plots show distribution of expression levels for Ribonuclease P protein subunit p25-like (SMED30000050) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Ribonuclease P protein subunit p25-like (SMED30000050) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Ribonuclease P protein subunit p25-like (SMED30000050) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30000050

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30000050SMESG000064264.1 SmedASXL_001299SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Human
Match: RPP25L (ribonuclease P/MRP subunit p25 like [Source:HGNC Symbol;Acc:HGNC:19909])

HSP 1 Score: 73.1738 bits (178), Expect = 5.564e-16
Identity = 43/153 (28.10%), Postives = 79/153 (51.63%), Query Frame = 3 
Query:   39 MEKYKKV----LTTKSPVPKFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASD--LETLEATRNIPSILILLSK--IQFNHVGLQYQTSEMNISDIVYNS 473
            ME Y+K     L   SP+P+   +    + M V++GSKI NL+  A+ ++E  +   + + G  ++  KAV+CAE +K      L+Q+TK+ +      + P + D  L+ L   R++P++ +LLS+  +  N  G Q   +   +  +  +S
Sbjct:    1 MEHYRKAGSVELPAPSPMPQ---LPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKRRVPG-LHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPPGAPPGLGSMPSSS 149
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Human
Match: RPP25L (ribonuclease P/MRP subunit p25 like [Source:HGNC Symbol;Acc:HGNC:19909])

HSP 1 Score: 73.1738 bits (178), Expect = 5.564e-16
Identity = 43/153 (28.10%), Postives = 79/153 (51.63%), Query Frame = 3 
Query:   39 MEKYKKV----LTTKSPVPKFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASD--LETLEATRNIPSILILLSK--IQFNHVGLQYQTSEMNISDIVYNS 473
            ME Y+K     L   SP+P+   +    + M V++GSKI NL+  A+ ++E  +   + + G  ++  KAV+CAE +K      L+Q+TK+ +      + P + D  L+ L   R++P++ +LLS+  +  N  G Q   +   +  +  +S
Sbjct:    1 MEHYRKAGSVELPAPSPMPQ---LPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKRRVPG-LHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPPGAPPGLGSMPSSS 149
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Human
Match: RPP25 (ribonuclease P and MRP subunit p25 [Source:HGNC Symbol;Acc:HGNC:30361])

HSP 1 Score: 72.4034 bits (176), Expect = 2.255e-15
Identity = 43/130 (33.08%), Postives = 62/130 (47.69%), Query Frame = 3 
Query:   87 FNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVI--------------VKYEPIASDLETLEATRNIPSILILLSKIQFNHVGLQYQ 434
            F  ++ G +HM VK GSKI NL+ FA   +  P    + + G  ++ TK V CAE +K   +  L+Q+T++ Y SV                  EP AS    L   +N+P + ILLSK   +     YQ
Sbjct:   28 FADLAPGAVHMRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAG-LHQVTRLRYRSVREVWQSLPPGPTQGQTPGEPAAS----LSVLKNVPGLAILLSKDALDPRQPGYQ 152
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Fly
Match: CG9422 (gene:FBgn0033092 transcript:FBtr0086120)

HSP 1 Score: 68.5514 bits (166), Expect = 2.775e-14
Identity = 49/183 (26.78%), Postives = 83/183 (45.36%), Query Frame = 3 
Query:   39 MEKYKKVLTTKSPVPKFNFISEGCIH--------MNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASDLETLEATRNIPSILILLSKIQFNHV--GLQYQTSEMNISDIVYNSSQGHXXXXXXXXXXXHNLSRLQNSVLNK 557
            M  Y+K    +  + K +   E C+         M+VK G+K++N+I+FA + +       + W G    + K ++CAE +K   S  LYQ+T++ Y SV   ++P    LE +  TR IP++ IL+S  +      GLQ   +  +  D      Q H     +  ++ H     +    NK
Sbjct:    1 MMHYRKAENVEKELSKSDLPFEDCMPKSQKDFLWMHVKGGTKVSNVIEFAQEALNKGEHRCVVWSGSGGGVVKTISCAEVLKR--SHPLYQVTRMAYTSVEEHWKPQMEGLEEIIVTRQIPTLHILMSLDELPDTIDGLQKPNTSTDFWDGGGAQQQPHPRSQPRHQQQPHKPGAGRGGRPNK 181
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Fly
Match: CG9422 (gene:FBgn0033092 transcript:FBtr0086121)

HSP 1 Score: 68.5514 bits (166), Expect = 2.775e-14
Identity = 49/183 (26.78%), Postives = 83/183 (45.36%), Query Frame = 3 
Query:   39 MEKYKKVLTTKSPVPKFNFISEGCIH--------MNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASDLETLEATRNIPSILILLSKIQFNHV--GLQYQTSEMNISDIVYNSSQGHXXXXXXXXXXXHNLSRLQNSVLNK 557
            M  Y+K    +  + K +   E C+         M+VK G+K++N+I+FA + +       + W G    + K ++CAE +K   S  LYQ+T++ Y SV   ++P    LE +  TR IP++ IL+S  +      GLQ   +  +  D      Q H     +  ++ H     +    NK
Sbjct:    1 MMHYRKAENVEKELSKSDLPFEDCMPKSQKDFLWMHVKGGTKVSNVIEFAQEALNKGEHRCVVWSGSGGGVVKTISCAEVLKR--SHPLYQVTRMAYTSVEEHWKPQMEGLEEIIVTRQIPTLHILMSLDELPDTIDGLQKPNTSTDFWDGGGAQQQPHPRSQPRHQQQPHKPGAGRGGRPNK 181
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Fly
Match: CG9422 (gene:FBgn0033092 transcript:FBtr0306112)

HSP 1 Score: 68.5514 bits (166), Expect = 2.775e-14
Identity = 49/183 (26.78%), Postives = 83/183 (45.36%), Query Frame = 3 
Query:   39 MEKYKKVLTTKSPVPKFNFISEGCIH--------MNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASDLETLEATRNIPSILILLSKIQFNHV--GLQYQTSEMNISDIVYNSSQGHXXXXXXXXXXXHNLSRLQNSVLNK 557
            M  Y+K    +  + K +   E C+         M+VK G+K++N+I+FA + +       + W G    + K ++CAE +K   S  LYQ+T++ Y SV   ++P    LE +  TR IP++ IL+S  +      GLQ   +  +  D      Q H     +  ++ H     +    NK
Sbjct:    1 MMHYRKAENVEKELSKSDLPFEDCMPKSQKDFLWMHVKGGTKVSNVIEFAQEALNKGEHRCVVWSGSGGGVVKTISCAEVLKR--SHPLYQVTRMAYTSVEEHWKPQMEGLEEIIVTRQIPTLHILMSLDELPDTIDGLQKPNTSTDFWDGGGAQQQPHPRSQPRHQQQPHKPGAGRGGRPNK 181
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Zebrafish
Match: rpp25a (ribonuclease P and MRP subunit p25, a [Source:NCBI gene;Acc:100000532])

HSP 1 Score: 74.3294 bits (181), Expect = 2.877e-16
Identity = 43/130 (33.08%), Postives = 71/130 (54.62%), Query Frame = 3 
Query:   48 YKKVLTTKSPVP-KFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASDLETLEATRNIPSILILLSKIQFNHVGLQYQ 434
            ++K+ +T  P+P     ++   + M VK GSKI NL+ FA+ +IE     Q+ + G  +++TK + CAE +K   +  L+Q++K+ Y +V   +E   S    +   R +PSI ILLSK   +     YQ
Sbjct:   34 FRKIRSTGEPIPNPIPGLASDVLEMRVKEGSKIRNLLGFAMSRIEGDGQTQVLFSGTGRAVTKTITCAEIMKRKVAG-LHQVSKLQYRTVTEVWE---SQESQMTVHRTLPSICILLSKEPLDPHEPGYQ 159
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Zebrafish
Match: rpp25l (ribonuclease P/MRP 25 subunit-like [Source:ZFIN;Acc:ZDB-GENE-040718-275])

HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-15
Identity = 48/158 (30.38%), Postives = 80/158 (50.63%), Query Frame = 3 
Query:   39 MEKYKKVLTTKSPVP-KFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNV-------------------YQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPI--ASDLETLEATRNIPSILILLSK--IQFNHVGLQYQTS 440
            ME Y+K  T + P P  F  +      + VK+GSKI NL++FA+ ++E+                       Q+ + G  +S+ KA+ C E +K      L+Q+TK+ Y ++   +EP+   + L++L  +RN+PSI +LLS+  +  N  G Q   S
Sbjct:    1 MENYRKANTIEQPCPCPFPDLPSDTPEVRVKDGSKIRNLMRFALSRMEEKTAASADHEGSEVSVGTGDNLCRQIVFTGVGQSVAKAITCVEIMKRRIHG-LHQLTKLAYRTLQDVWEPLEPGAGLDSLTVSRNVPSIWVLLSRDSLDKNQPGYQAPGS 157
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Zebrafish
Match: rpp25b (ribonuclease P and MRP subunit p25, b [Source:ZFIN;Acc:ZDB-GENE-170530-4])

HSP 1 Score: 67.781 bits (164), Expect = 2.701e-13
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 3 
Query:   87 FNFISEGCIHMNVKNGSKINNLIQFAIKKIED-PNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASDLETLEAT--RNIPSILILLSKIQFNHVGLQYQTSE 443
            F  ++ G + M VK GSKI NL+ F++ +++D   + Q+ + G  +++TK + CAE +K      L+QI+K+ Y  +   +E  + D    + T  R +PSI ILLSK   + +   YQ  E
Sbjct:   31 FPNLTAGVLEMRVKEGSKIRNLMGFSMARMQDGAALRQVVFSGSGRAVTKTITCAEIMKRKMPG-LHQISKLQYRGLREVWE--SQDRGDAQVTVHRTLPSISILLSKDPLDPLEPGYQPPE 149
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Xenopus
Match: RPP25 (ribonuclease P and MRP subunit p25 [Source:HGNC Symbol;Acc:HGNC:30361])

HSP 1 Score: 57.3806 bits (137), Expect = 3.603e-10
Identity = 42/129 (32.56%), Postives = 63/129 (48.84%), Query Frame = 3 
Query:   39 MEKYKKVLTTKS----PVPKFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASDLE----TLEATRNIPSILILLSK 401
            ME +++V         P+P F  +    + M VK GSKI NL+ +A+  +      Q+ +    + +TKAV C E +K      L+Q+TKV Y  V   +E     ++     L   +N PSI ILLSK
Sbjct:    1 MENFRRVQVVDEDDGQPLP-FKNLHPDVVKMRVKEGSKIRNLVGYAVTHMLSEENGQIVFSAYGRGVTKAVTCVEILKRKIGG-LHQVTKVQYKIVQEVWEQKGPKVQHPAPRLNVQKNYPSINILLSK 127
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Mouse
Match: Rpp25 (ribonuclease P/MRP 25 subunit [Source:MGI Symbol;Acc:MGI:2143151])

HSP 1 Score: 78.1814 bits (191), Expect = 9.575e-18
Identity = 50/162 (30.86%), Postives = 77/162 (47.53%), Query Frame = 3 
Query:   39 MEKYKKVLTTKSPV--------P---KFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSV--------------IVKYEPIASDLETLEATRNIPSILILLSKIQFNHVGLQYQTSEMN 449
            ME ++KV + ++P         P    F  ++ G +HM VK GSKI NL+ FA   +  P    + + G  ++ TK V CAE +K   +  L+Q+T++ Y SV                  +P AS    L   +N+PS+ ILLSK   +   L YQ   ++
Sbjct:    1 MENFRKVRSEEAPAGDGDEGGSPNSGPFADLAPGAVHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAG-LHQVTRLRYRSVREVWQSLPPGPTPGQTPSDPAAS----LSVLKNVPSLAILLSKDALDPRQLGYQPPNLS 157
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Mouse
Match: Rpp25l (ribonuclease P/MRP 25 subunit-like [Source:MGI Symbol;Acc:MGI:1917211])

HSP 1 Score: 72.0182 bits (175), Expect = 8.146e-16
Identity = 40/138 (28.99%), Postives = 74/138 (53.62%), Query Frame = 3 
Query:   39 MEKYKKV----LTTKSPVPKFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASD--LETLEATRNIPSILILLSKIQFNHVGLQYQ 434
            ME+Y++     L   SP+P+   +    + M V++GSKI NL+  A+ ++E  +   + + G  ++  KAV+CAE +K      L+Q+TK+ +      + P + D  L+ L   R++P++ +LLS+   +     YQ
Sbjct:    1 MEQYRRAGSVELPASSPMPQ---LPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVKRRVPG-LHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQ 134
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. UniProt/SwissProt
Match: sp|Q5PPN2|RPP25_RAT (Ribonuclease P protein subunit p25 OS=Rattus norvegicus OX=10116 GN=Rpp25 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.153e-17
Identity = 50/162 (30.86%), Postives = 77/162 (47.53%), Query Frame = 3 
Query:   39 MEKYKKVLTTKSPV--------P---KFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSV--------------IVKYEPIASDLETLEATRNIPSILILLSKIQFNHVGLQYQTSEMN 449
            ME ++KV + ++P         P    F  ++ G +HM VK GSKI NL+ FA   +  P    + + G  ++ TK V CAE +K   +  L+Q+T++ Y SV                  +P AS    L   +N+PS+ ILLSK   +   L YQ   ++
Sbjct:    1 MENFRKVRSEEAPAGDGDEGGSPSSGPFADLAPGAVHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAG-LHQVTRLRYRSVREVWQSLPPGPTPGQTPSDPAAS----LSVLKNVPSLAILLSKDALDPRQLGYQPPNLS 157
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. UniProt/SwissProt
Match: sp|Q91WE3|RPP25_MOUSE (Ribonuclease P protein subunit p25 OS=Mus musculus OX=10090 GN=Rpp25 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.698e-17
Identity = 50/162 (30.86%), Postives = 77/162 (47.53%), Query Frame = 3 
Query:   39 MEKYKKVLTTKSPV--------P---KFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSV--------------IVKYEPIASDLETLEATRNIPSILILLSKIQFNHVGLQYQTSEMN 449
            ME ++KV + ++P         P    F  ++ G +HM VK GSKI NL+ FA   +  P    + + G  ++ TK V CAE +K   +  L+Q+T++ Y SV                  +P AS    L   +N+PS+ ILLSK   +   L YQ   ++
Sbjct:    1 MENFRKVRSEEAPAGDGDEGGSPNSGPFADLAPGAVHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAG-LHQVTRLRYRSVREVWQSLPPGPTPGQTPSDPAAS----LSVLKNVPSLAILLSKDALDPRQLGYQPPNLS 157
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. UniProt/SwissProt
Match: sp|Q8N5L8|RP25L_HUMAN (Ribonuclease P protein subunit p25-like protein OS=Homo sapiens OX=9606 GN=RPP25L PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.672e-15
Identity = 43/153 (28.10%), Postives = 79/153 (51.63%), Query Frame = 3 
Query:   39 MEKYKKV----LTTKSPVPKFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASD--LETLEATRNIPSILILLSK--IQFNHVGLQYQTSEMNISDIVYNS 473
            ME Y+K     L   SP+P+   +    + M V++GSKI NL+  A+ ++E  +   + + G  ++  KAV+CAE +K      L+Q+TK+ +      + P + D  L+ L   R++P++ +LLS+  +  N  G Q   +   +  +  +S
Sbjct:    1 MEHYRKAGSVELPAPSPMPQ---LPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKRRVPG-LHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPPGAPPGLGSMPSSS 149
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. UniProt/SwissProt
Match: sp|Q99JH1|RP25L_MOUSE (Ribonuclease P protein subunit p25-like protein OS=Mus musculus OX=10090 GN=Rpp25l PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.698e-15
Identity = 40/138 (28.99%), Postives = 74/138 (53.62%), Query Frame = 3 
Query:   39 MEKYKKV----LTTKSPVPKFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASD--LETLEATRNIPSILILLSKIQFNHVGLQYQ 434
            ME+Y++     L   SP+P+   +    + M V++GSKI NL+  A+ ++E  +   + + G  ++  KAV+CAE +K      L+Q+TK+ +      + P + D  L+ L   R++P++ +LLS+   +     YQ
Sbjct:    1 MEQYRRAGSVELPASSPMPQ---LPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVKRRVPG-LHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQ 134
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. UniProt/SwissProt
Match: sp|Q9BUL9|RPP25_HUMAN (Ribonuclease P protein subunit p25 OS=Homo sapiens OX=9606 GN=RPP25 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.083e-14
Identity = 43/130 (33.08%), Postives = 62/130 (47.69%), Query Frame = 3 
Query:   87 FNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVI--------------VKYEPIASDLETLEATRNIPSILILLSKIQFNHVGLQYQ 434
            F  ++ G +HM VK GSKI NL+ FA   +  P    + + G  ++ TK V CAE +K   +  L+Q+T++ Y SV                  EP AS    L   +N+P + ILLSK   +     YQ
Sbjct:   28 FADLAPGAVHMRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAG-LHQVTRLRYRSVREVWQSLPPGPTQGQTPGEPAAS----LSVLKNVPGLAILLSKDALDPRQPGYQ 152
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. TrEMBL
Match: V8NDC3 (Alba-like protein C9orf23 (Fragment) OS=Ophiophagus hannah OX=8665 GN=L345_14636 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.085e-20
Identity = 58/144 (40.28%), Postives = 81/144 (56.25%), Query Frame = 3 
Query:   18 FLNISSLMEKYKK--VLTTKSPVPKFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASD--LETLEATRNIPSILILLSKIQFNHVGLQYQT 437
            FL     ME Y+K  V+   SP+P F+ +    I M VK+GSKI NL+ +AI K+E   + QM + G  K+I K + C E +K      L+QITKVF+  +   +EPI  +  L+ L   RNIP+I +LLSK   +H    YQ 
Sbjct:    7 FLTALQTMENYQKSKVVEKPSPLP-FSNLPSDIIEMKVKDGSKIRNLMGYAIGKMEQETMRQMLFSGVGKAINKTITCVEIMKRRLKD-LHQITKVFFQQIEEIWEPIVPEAGLDPLTVKRNIPAICVLLSKDPLDHQEPGYQA 148
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. TrEMBL
Match: A0A091NY06 (Ribonuclease P protein subunit p25-like (Fragment) OS=Haliaeetus albicilla OX=8969 GN=N329_02025 PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.232e-20
Identity = 53/137 (38.69%), Postives = 76/137 (55.47%), Query Frame = 3 
Query:   39 MEKYKKVLTTKSPVP-KFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASD--LETLEATRNIPSILILLSKIQFNHVGLQYQTS 440
            ME YKK    + P P  F  +    I M VK+GSKI NL+ +AI+K+E  +V Q+ + G  K+++K + C E +K      L+QITKV +  +   +EPI  +  L+ L   RNIP+I +LLSK   N     YQ  
Sbjct:    1 MENYKKTRIVEKPCPLPFTDLPPDIIEMKVKDGSKIRNLMGYAIRKMEQESVRQILFTGSGKAVSKTITCVEIMKRRLKE-LHQITKVLFKQIEEIWEPIVPEAGLDALTVKRNIPAICVLLSKDALNPQEPGYQAP 136
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. TrEMBL
Match: A0A401T443 (Alba domain-containing protein OS=Chiloscyllium punctatum OX=137246 GN=chiPu_0015906 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.654e-20
Identity = 56/139 (40.29%), Postives = 82/139 (58.99%), Query Frame = 3 
Query:   39 MEKYKKVLTTKSPVP-KFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASD--LETLEATRNIPSILILLSK--IQFNHVGLQYQTS 440
            ME Y+K   T+ P P     + +  I M VK GSKI NL+ +AI K+E  N+ ++ + G  K+++KA+ C E +K    S L+QITK+FY  V   +EP+ S+  L++L   RN+P+I ILLSK  +  N  G Q   S
Sbjct:    1 MENYQKTKITELPCPLPIANLRKDIIEMKVKEGSKIRNLMGYAIGKMESANIREILFTGTGKAVSKAITCVEIMKRRLKS-LHQITKLFYKQVEELWEPVVSEAGLDSLTVKRNLPAICILLSKDILHKNEPGYQAPGS 138
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. TrEMBL
Match: A0A091PH61 (Ribonuclease P protein subunit p25-like (Fragment) OS=Leptosomus discolor OX=188344 GN=N330_06179 PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.758e-20
Identity = 54/137 (39.42%), Postives = 76/137 (55.47%), Query Frame = 3 
Query:   39 MEKYKKVLTTKSPVP-KFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASD--LETLEATRNIPSILILLSKIQFNHVGLQYQTS 440
            ME YKK    + P P  F  +    I M VK+GSKI NL+ +AI K+E  +V QM + G  K+++K + C E +K      L+QITKV +  +   +EPI  +  L+TL   RNIP+I +LLSK   +     YQ  
Sbjct:    1 MENYKKTKIVEKPCPLPFTNLPPDIIEMKVKDGSKIRNLMGYAIGKMELDSVRQMLFTGSGKAVSKTITCVEIMKRRLKE-LHQITKVLFKQIEEIWEPIVPEAGLDTLTVKRNIPAICVLLSKDALDPREPGYQAP 136
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. TrEMBL
Match: A0A402FKQ6 (Alba domain-containing protein OS=Paroedura picta OX=143630 GN=parPi_0019609 PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.429e-20
Identity = 55/136 (40.44%), Postives = 79/136 (58.09%), Query Frame = 3 
Query:   39 MEKYKKVLTTKSPVP-KFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASD--LETLEATRNIPSILILLSKIQFNHVGLQYQT 437
            ME Y+K  T + P P  F+ + E  I M VK+GSKI NL+ +AI K+E  +V Q+ + G  K+I+K + C E +K    S L+QITKVF+      +EP+  +  L+ L   RN+P+I ILLSK   +     YQ 
Sbjct:    1 MENYQKAKTVEKPSPLPFSNLPEDIIEMKVKDGSKIRNLVGYAIGKMELDSVRQVLFSGTGKAISKTITCVEIMKRRLRS-LHQITKVFFRQTEEIWEPLVPEAGLDPLTVKRNVPAICILLSKDPLDTQEPGYQA 135
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Cavefish
Match: rpp25b (ribonuclease P and MRP subunit p25, b [Source:ZFIN;Acc:ZDB-GENE-170530-4])

HSP 1 Score: 77.411 bits (189), Expect = 2.793e-17
Identity = 50/146 (34.25%), Postives = 74/146 (50.68%), Query Frame = 3 
Query:   33 SLMEKYKKVLTTK--SPVPKFNFISEGCIHMNVKNGSKINNLIQFAIKKIED-------PNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASDLETLEATRNIPSILILLSKIQFNHVGLQYQTSE 443
             L   +KKVL T+  SP P F  +  G + M VK GSKI NL+ FA+ +++          + Q+ + G  +++TK + CAE +K      LYQ+TK+ Y  V   +E        +   R +PSI ILLSK   + +   YQ  E
Sbjct:   40 GLAAGFKKVLRTEEDSPSP-FPGVLPGILEMRVKEGSKIRNLMGFAMARMQSESGDSGRAGLRQVVFAGSGRAVTKTITCAEIMKRKVGG-LYQLTKLQYKGVQEVWESQEGGESEMTVHRTVPSISILLSKDPLDPLEPGYQPPE 183
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Cavefish
Match: rpp25l (ribonuclease P protein subunit p25-like protein [Source:NCBI gene;Acc:103040714])

HSP 1 Score: 70.0922 bits (170), Expect = 1.280e-14
Identity = 43/160 (26.88%), Postives = 72/160 (45.00%), Query Frame = 3 
Query:   39 MEKYKKVLTTKSPVP-KFNFISEGCIHMNVKNGSKINNLIQFAIKKIE------------------------DPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASD--LETLEATRNIPSILILLSKIQFNHVGLQYQT 437
            ME Y+K    + P P  F  +      + V+ GSKI NL++FA+ ++E                        +    Q+ + G   S+ KA+ C E +K      L+Q+ ++ Y +V   +EP+  +  LE L  +RN+P I +LLS+   +     YQ 
Sbjct:    1 MENYRKAGVVEQPCPCPFTSLPADTPQVRVREGSKIRNLMRFALSRMEGKAAAESAGTTEEPEQNQNLSAGGEAGCRQIVFSGAGPSVAKAITCVEILKRRVRG-LHQVNRLLYRTVQETWEPLEPEAGLERLTVSRNVPGIWVLLSRDPLDSGQPGYQA 159
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Cavefish
Match: ENSAMXT00000036950.1 (pep primary_assembly:Astyanax_mexicanus-2.0:8:19633819:19637245:-1 gene:ENSAMXG00000034774.1 transcript:ENSAMXT00000036950.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 67.0106 bits (162), Expect = 9.483e-14
Identity = 46/153 (30.07%), Postives = 78/153 (50.98%), Query Frame = 3 
Query:   15 SFLNISSLMEKYKKVLTTKSPVPKFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPN----VYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASDLETLEATRNIPSILILLSKIQFNHVGLQYQT-SEMNISD 458
             F  +SS  E       +  PVP    +  G + M VK GSKI NL+ FA+ +++       V Q+ + G  ++ITK + CAE +K      L+Q++K+ Y +V   ++    +   +   + +P+I I LSK   + + L YQ+ +EM+ S 
Sbjct:   21 GFRRVSSTGEP------SSCPVPG---LGPGVLEMRVKEGSKIRNLLGFAMSRLQGGGHVSPVSQVMFTGTGRAITKTITCAEIMKRHIRG-LHQVSKLQYRTVREVWQSREDESIQMTVVKKVPAIYIFLSKEPLDPLELGYQSPAEMSSSS 163
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Medaka
Match: rpp25l (ribonuclease P/MRP 25 subunit-like [Source:ZFIN;Acc:ZDB-GENE-040718-275])

HSP 1 Score: 74.7146 bits (182), Expect = 1.213e-16
Identity = 43/151 (28.48%), Postives = 80/151 (52.98%), Query Frame = 3 
Query:   39 MEKYKKVLTTKSP-VPKFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPN---------------VYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPI--ASDLETLEATRNIPSILILLSKIQFNHVGLQYQT 437
            ME Y +  + + P V  F  ++     + VK+GSKI NL++FA+ ++E                    QM +    K+++KA+ CAE +K      L+Q+T++ +++V+  +EP+  A+ L++L  +R +P++ ILLS+   +     YQ 
Sbjct:    1 MENYSRARSVEQPSVCPFAGLAADTPELRVKDGSKIRNLLRFALSRMEAKRRGGEEDEGGQRVHAACPQMVFTASGKAVSKAITCAEIVKRRVKG-LHQLTRLLHSTVVEVWEPLEPAAGLDSLNVSRKLPAVWILLSREPLDSSQPGYQA 150
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Medaka
Match: rpp25b (ribonuclease P and MRP subunit p25, b [Source:ZFIN;Acc:ZDB-GENE-170530-4])

HSP 1 Score: 69.3218 bits (168), Expect = 1.966e-14
Identity = 45/147 (30.61%), Postives = 72/147 (48.98%), Query Frame = 3 
Query:   42 EKYKKVLTTK--SPVPKFNFISEGCIHMNVKNGSKINNLIQFAIKKIED-----------PNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASDLETLEATRNIPSILILLSKIQFNHVGLQYQTSE 443
            + ++KV  T+  SP P F  +  G + M VK GSKI NL+ FA+ +++              + Q+ + G  +++TK + CAE +K      L+Q+TK+ Y  +   +E        +   R +PSI ILLSK   +     YQ  E
Sbjct:   37 DGFRKVCRTEEDSPSP-FPGLPPGVLEMRVKEGSKIRNLMGFAMARMQGEKGGSEGGVSSAGLRQVVFTGSGRAVTKTITCAEIMKRKVGR-LHQLTKLRYKVIKEVWESAEGGTSEMTLHRTVPSISILLSKDPLDPQEPGYQPPE 181
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Medaka
Match: ENSORLT00000006165.2 (ribonuclease P protein subunit p25-like protein [Source:NCBI gene;Acc:101158762])

HSP 1 Score: 60.8474 bits (146), Expect = 1.579e-11
Identity = 38/120 (31.67%), Postives = 65/120 (54.17%), Query Frame = 3 
Query:   51 KKVLTTKS----PVPKFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASDLETLEATRNIPSILILLS 398
            +KVL T+S    P+P    ++   +HM VK GSKI+++++ A  +I D  + Q+ + G  + ITK + C E +K      L+Q+ KV+Y      +E    +       +++P+I ILLS
Sbjct:   20 RKVLLTESNNSHPIP---GLAPNTLHMRVKEGSKIHSIVRIATARIND-GIRQVVFTGSGRGITKTITCVEILKRNMVG-LHQLCKVYYKRTNQNWENPQWEASAPVVEKSVPAICILLS 134
[Close]
BLAST of Ribonuclease P protein subunit p25-like vs. Planmine SMEST
Match: SMESG000064264.1 (SMESG000064264.1)

HSP 1 Score: 330.872 bits (847), Expect = 1.352e-117
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 3 
Query:   39 MEKYKKVLTTKSPVPKFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASDLETLEATRNIPSILILLSKIQFNHVGLQYQTSEMNISDIVYNSSQGHXXXXXXXXXXXHNLSRLQNSVLNKD 560
            MEKYKKVLTTKSPVPKFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASDLE+LEATRNIPSILILLSKIQFNHVGLQYQTSEMNISDIVYNSSQGHVVKLLKKVKRKHNLSRLQNSVLNKD
Sbjct:    1 MEKYKKVLTTKSPVPKFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPNVYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIASDLESLEATRNIPSILILLSKIQFNHVGLQYQTSEMNISDIVYNSSQGHVVKLLKKVKRKHNLSRLQNSVLNKD 174
The following BLAST results are available for this feature:
BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
RPP25L5.564e-1628.10ribonuclease P/MRP subunit p25 like [Source:HGNC S... [more]
RPP25L5.564e-1628.10ribonuclease P/MRP subunit p25 like [Source:HGNC S... [more]
RPP252.255e-1533.08ribonuclease P and MRP subunit p25 [Source:HGNC Sy... [more]
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BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
CG94222.775e-1426.78gene:FBgn0033092 transcript:FBtr0086120[more]
CG94222.775e-1426.78gene:FBgn0033092 transcript:FBtr0086121[more]
CG94222.775e-1426.78gene:FBgn0033092 transcript:FBtr0306112[more]
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BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rpp25a2.877e-1633.08ribonuclease P and MRP subunit p25, a [Source:NCBI... [more]
rpp25l1.035e-1530.38ribonuclease P/MRP 25 subunit-like [Source:ZFIN;Ac... [more]
rpp25b2.701e-1333.61ribonuclease P and MRP subunit p25, b [Source:ZFIN... [more]
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BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
RPP253.603e-1032.56ribonuclease P and MRP subunit p25 [Source:HGNC Sy... [more]
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BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Rpp259.575e-1830.86ribonuclease P/MRP 25 subunit [Source:MGI Symbol;A... [more]
Rpp25l8.146e-1628.99ribonuclease P/MRP 25 subunit-like [Source:MGI Sym... [more]
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BLAST of Ribonuclease P protein subunit p25-like vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q5PPN2|RPP25_RAT5.153e-1730.86Ribonuclease P protein subunit p25 OS=Rattus norve... [more]
sp|Q91WE3|RPP25_MOUSE6.698e-1730.86Ribonuclease P protein subunit p25 OS=Mus musculus... [more]
sp|Q8N5L8|RP25L_HUMAN2.672e-1528.10Ribonuclease P protein subunit p25-like protein OS... [more]
sp|Q99JH1|RP25L_MOUSE5.698e-1528.99Ribonuclease P protein subunit p25-like protein OS... [more]
sp|Q9BUL9|RPP25_HUMAN1.083e-1433.08Ribonuclease P protein subunit p25 OS=Homo sapiens... [more]
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BLAST of Ribonuclease P protein subunit p25-like vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
V8NDC31.085e-2040.28Alba-like protein C9orf23 (Fragment) OS=Ophiophagu... [more]
A0A091NY061.232e-2038.69Ribonuclease P protein subunit p25-like (Fragment)... [more]
A0A401T4432.654e-2040.29Alba domain-containing protein OS=Chiloscyllium pu... [more]
A0A091PH612.758e-2039.42Ribonuclease P protein subunit p25-like (Fragment)... [more]
A0A402FKQ63.429e-2040.44Alba domain-containing protein OS=Paroedura picta ... [more]
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BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rpp25b2.793e-1734.25ribonuclease P and MRP subunit p25, b [Source:ZFIN... [more]
rpp25l1.280e-1426.88ribonuclease P protein subunit p25-like protein [S... [more]
ENSAMXT00000036950.19.483e-1430.07pep primary_assembly:Astyanax_mexicanus-2.0:8:1963... [more]
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BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ribonuclease P protein subunit p25-like vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rpp25l1.213e-1628.48ribonuclease P/MRP 25 subunit-like [Source:ZFIN;Ac... [more]
rpp25b1.966e-1430.61ribonuclease P and MRP subunit p25, b [Source:ZFIN... [more]
ENSORLT00000006165.21.579e-1131.67ribonuclease P protein subunit p25-like protein [S... [more]
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BLAST of Ribonuclease P protein subunit p25-like vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000064264.11.352e-11799.43SMESG000064264.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30000050 ID=SMED30000050|Name=Ribonuclease P protein subunit p25-like|organism=Schmidtea mediterranea sexual|type=transcript|length=568bp
GTTGAGTTTTATTGAGTTTTTTGAATATTTCAAGCTTAATGGAAAAATAC
AAAAAAGTGTTAACCACTAAAAGTCCTGTACCCAAATTTAATTTTATTTC
AGAAGGTTGTATTCACATGAATGTGAAAAATGGAAGTAAAATTAATAATC
TTATTCAATTTGCTATAAAGAAAATTGAAGATCCAAATGTTTACCAGATG
GCTTGGTGGGGAGATGATAAGTCTATTACCAAAGCAGTGGCGTGTGCAGA
ACGAATTAAACATACTTTTAGTTCAATTTTGTATCAAATTACGAAAGTTT
TTTATAATAGCGTTATTGTTAAGTATGAGCCGATAGCTTCTGACTTAGAA
ACATTAGAAGCTACTCGAAATATTCCTTCAATTTTAATTTTATTATCCAA
AATTCAATTCAATCATGTAGGATTGCAGTATCAGACTTCAGAAATGAATA
TAAGTGATATTGTTTACAATTCTTCCCAGGGTCATGTGGTAAAATTGTTA
AAAAAAGTTAAAAGAAAACATAATTTATCTCGATTGCAAAATTCTGTTTT
AAATAAAGATTAATTTGA
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protein sequence of SMED30000050-orf-1

>SMED30000050-orf-1 ID=SMED30000050-orf-1|Name=SMED30000050-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=175bp
MEKYKKVLTTKSPVPKFNFISEGCIHMNVKNGSKINNLIQFAIKKIEDPN
VYQMAWWGDDKSITKAVACAERIKHTFSSILYQITKVFYNSVIVKYEPIA
SDLETLEATRNIPSILILLSKIQFNHVGLQYQTSEMNISDIVYNSSQGHV
VKLLKKVKRKHNLSRLQNSVLNKD*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR036882Alba-like_dom_sf
IPR002775DNA/RNA-bd_Alba-like
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002775DNA/RNA-binding protein Alba-likePFAMPF01918Albacoord: 32..95
e-value: 8.3E-8
score: 31.9
IPR036882Alba-like domain superfamilyGENE3DG3DSA:3.30.110.20coord: 31..129
e-value: 3.7E-8
score: 35.1
IPR036882Alba-like domain superfamilySUPERFAMILYSSF82704AlbA-likecoord: 33..127
NoneNo IPR availablePANTHERPTHR13516RIBONUCLEASE P SUBUNIT P25coord: 7..143
NoneNo IPR availablePANTHERPTHR13516:SF8RIBONUCLEASE P PROTEIN SUBUNIT P25-LIKE PROTEINcoord: 7..143