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Overview
To create this map we selected 10 transcriptomes available through Planmine (Rozanski et al., 2019), Schmidtea mediterranea nucleotide sequences from the NCBI (NCBI Resource Coordinators, 2016) and dd_Smed_v4 (an older version of the dd_Smed_v6 transcriptome available on Planmine). Sequences from all transcriptomes were aligned with blat (-minScore=100 -minIdentity=95) (Kent, 2002) to the most recent gene model transcripts (dd_Smes_v2) and to smed_20140614 (Tu et al., 2015). Aligned sequences were assigned to the corresponding gene models. Microarray probe sequences were aligned to reference sequences with blat (-minScore=30 -minIdentity=95)
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